RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12521
(313 letters)
>d1uf5a_ d.160.1.2 (A:) N-carbamoyl-D-aminoacid amidohydrolase
{Agrobacterium sp. [TaxId: 361]}
Length = 303
Score = 90.5 bits (223), Expect = 1e-21
Identities = 43/210 (20%), Positives = 87/210 (41%), Gaps = 17/210 (8%)
Query: 77 QLCIKYNMVIVSPILERDDVTDIIWNTAVVINNHGRVMGKHRKNHIPRVGDFNE------ 130
+L I +N+ ++E +NT+++++ G+++GK+RK H+P ++
Sbjct: 86 ELGIGFNLGYAELVVEGGV--KRRFNTSILVDKSGKIVGKYRKIHLPGHKEYEAYRPFQH 143
Query: 131 --STYYFEGNTGHPVFETEFGRIAINICYGRHHPLNWLMFGLNGAEIVFNPSATITGLSE 188
Y+ G+ G PV++ + ++ + I R P W + GL GAEI+ T T
Sbjct: 144 LEKRYFEPGDLGFPVYDVDAAKMGMFIANDRRWPEAWRVMGLRGAEIICGGYNTPTHNPP 203
Query: 189 PLWGIEARNAAIANGYFTCAINRVGSETFPNQFTSGDGKPAHTQFGHFYGSSYITAPNGT 248
+ + +++ GK + G S I AP G
Sbjct: 204 VPQHDHLTSFHHLLSMQAGSY-------QNGAWSAAAGKAGMEENCMLLGHSCIVAPTGE 256
Query: 249 RTPGLSRVRDGLLVAELDLNLNRQVKDVWG 278
+ + D ++ A +DL+ R++++
Sbjct: 257 IVALTTTLEDEVITAAVDLDRCRELREHIF 286
>d1j31a_ d.160.1.2 (A:) Hypothetical protein PH0642 {Archaeon
Pyrococcus horikoshii [TaxId: 53953]}
Length = 262
Score = 81.2 bits (199), Expect = 2e-18
Identities = 45/213 (21%), Positives = 80/213 (37%), Gaps = 26/213 (12%)
Query: 78 LCIKYNMVIVSPILERDDVTDIIWNTAVVINNHGRVMGKHRKNHIPRVGDFNESTYYFEG 137
L + + + + + + V+ +GK+RK H+ + E ++ G
Sbjct: 72 LMELARELGLYIVAGTAEKSGNYLYNSAVVVGPRGYIGKYRKIHLF----YREKVFFEPG 127
Query: 138 NTGHPVFETEFGRIAINICYGRHHPLNWLMFGLNGAEIVFNPSATITGLSEPLWGIEARN 197
+ G VF+ F ++ + IC+ P + L GAEI+ +P+ + +
Sbjct: 128 DLGFKVFDIGFAKVGVMICFDWFFPESARTLALKGAEIIAHPANLVMPYAPRAM----PI 183
Query: 198 AAIANGYFTCAINRVGSETFPNQFTSGDGKPAHTQFGHFYGSSYITAPNGTRTPGLSRVR 257
A+ N +T +RVG + F G S I +P S
Sbjct: 184 RALENRVYTITADRVG----------------EERGLKFIGKSLIASPKAEVLSIASETE 227
Query: 258 DGLLVAELDLNLNRQVK--DVWGFQASIRELVY 288
+ + V E+DLNL R + D+ RE Y
Sbjct: 228 EEIGVVEIDLNLARNKRLNDMNDIFKDRREEYY 260
>d1emsa2 d.160.1.1 (A:10-280) NIT-FHIT fusion protein, N-terminal
domain {Nematode (Caenorhabditis elegans) [TaxId: 6239]}
Length = 271
Score = 70.5 bits (171), Expect = 1e-14
Identities = 42/206 (20%), Positives = 71/206 (34%), Gaps = 21/206 (10%)
Query: 79 CIKYNMVIVSPILERDDVTDIIWNTAVVINNHGRVMGKHRKNHIPRVGDFNESTYYFE-- 136
+ + + WNT ++I++ G ++ K H+ + +
Sbjct: 78 KHNIWLSLGGLHHKDPSDAAHPWNTHLIIDSDGVTRAEYNKLHLFDLEIPGKVRLMESEF 137
Query: 137 ---GNTGHPVFETEFGRIAINICYGRHHPLNWLMFGLNGAEIVFNPSATITGLSEPLWGI 193
G P +T GR+ ++ICY P L GA+++ PSA W
Sbjct: 138 SKAGTEMIPPVDTPIGRLGLSICYDVRFPELSLWNRKRGAQLLSFPSAFTLNTGLAHWET 197
Query: 194 EARNAAIANGYFTCAINRVGSETFPNQFTSGDGKPAHTQFGHFYGSSYITAPNGTRTPGL 253
R AI N + A + G AH YG S + P G
Sbjct: 198 LLRARAIENQCYVVAAAQTG---------------AHNPKRQSYGHSMVVDPWGAVVAQC 242
Query: 254 SRVRDGLLVAELDLNLNRQVKDVWGF 279
S R + AE+DL+ ++++
Sbjct: 243 SE-RVDMCFAEIDLSYVDTLREMQPV 267
>d1f89a_ d.160.1.1 (A:) hypothetical protein yl85 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 281
Score = 49.0 bits (115), Expect = 2e-07
Identities = 44/214 (20%), Positives = 79/214 (36%), Gaps = 20/214 (9%)
Query: 70 TFDYFFPQLCIKYNMVIVSPILERDDVTDIIWNTAVVINNHGRVMGKHRKNHIPRVGDFN 129
+ + +++ I E D TD I+NT+++ N G+++ KHRK H+ V N
Sbjct: 78 SVQFLSNLANKFKIILVGGTIPELDPKTDKIYNTSIIFNEDGKLIDKHRKVHLFDVDIPN 137
Query: 130 ESTY----YFEGNTGHPVFETEFGRIAINICYGRHHPLNWLMFGLNGAEIVFNPSATITG 185
++ +T++G+ + ICY P ++ GA + PSA T
Sbjct: 138 GISFHESETLSPGEKSTTIDTKYGKFGVGICYDMRFPELAMLSARKGAFAMIYPSAFNTV 197
Query: 186 LSEPLWGIEARNAAIANGYFTCAINRVGSETFPNQFTSGDGKPAHTQFGHFYGSSYITAP 245
W + AR+ A+ N + + + H YG S + P
Sbjct: 198 TGPLHWHLLARSRAVDNQVYVMLCSPARN---------------LQSSYHAYGHSIVVDP 242
Query: 246 NGTRTPGLSRVRDGLLVAELDLNLNRQVKDVWGF 279
G + ++ AELD + +
Sbjct: 243 RGKIVAEAGE-GEEIIYAELDPEVIESFRQAVPL 275
>d1f15a_ b.121.4.5 (A:) Cucumovirus coat protein {CMV (Cucumber
mosaic virus), strain fny [TaxId: 12305]}
Length = 157
Score = 25.2 bits (55), Expect = 7.2
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 31 FTSGDGKPAHTEFGHFYG 48
FTS KP + G +YG
Sbjct: 9 FTSITLKPPKIDRGSYYG 26
>d2axtb1 f.55.1.1 (B:2-489) Photosystem II core light harvesting
protein PsbB {Thermosynechococcus elongatus [TaxId:
146786]}
Length = 488
Score = 25.9 bits (57), Expect = 8.2
Identities = 23/116 (19%), Positives = 34/116 (29%), Gaps = 26/116 (22%)
Query: 124 RVGDFNESTYYFEGNTGHPVFETEFGRIAINICYGRHHPLNWLMF--------GLNGAEI 175
R G N+ + GH VF + G + R P + F G+ A+I
Sbjct: 325 RTGPMNKGDGIAQAWKGHAVFRNKEGEEL----FVRRMPAFFESFPVILTDKNGVVKADI 380
Query: 176 VF----------NPSATITGLSEPLWGIEARNAAIANGYFTCA----INRVGSETF 217
F T++ L G + Y A I +ET
Sbjct: 381 PFRRAESKYSFEQQGVTVSFYGGELNGQTFTDPPTVKSYARKAIFGEIFEFDTETL 436
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.137 0.429
Gapped
Lambda K H
0.267 0.0598 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,219,837
Number of extensions: 57799
Number of successful extensions: 127
Number of sequences better than 10.0: 1
Number of HSP's gapped: 121
Number of HSP's successfully gapped: 10
Length of query: 313
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 228
Effective length of database: 1,240,546
Effective search space: 282844488
Effective search space used: 282844488
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.5 bits)