BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12523
(544 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3GBJ|A Chain A, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|B Chain B, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|C Chain C, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
Length = 354
Score = 281 bits (719), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 171/336 (50%), Positives = 206/336 (61%), Gaps = 68/336 (20%)
Query: 116 GSNINKQEALESMGISVQASGIKVEKNKYYLVNLNADPSLNELLVYYLKDCTLIGSSDKN 175
G NI Q A + + A G Y ++ P L L L + T ++N
Sbjct: 81 GENI-LQNAFDGYNACIFAYGQTGSGKSYTMMGTADQPGLIPRLCSGLFERT---QKEEN 136
Query: 176 DIQLSGNLKINFGLFFCFQVHDLLDPKANKQSLKVREHNVLGPYVDGLSQLAVTSFQEID 235
+ Q S +++++ + +V DLLDPK ++Q+LKVREH+VLGPYVDGLS+LAVTS+++I+
Sbjct: 137 EEQ-SFKVEVSYMEIYNEKVRDLLDPKGSRQTLKVREHSVLGPYVDGLSKLAVTSYKDIE 195
Query: 236 SLMAEGNKSRTVAATNMNSESSRSHAVFSVVLTQTLVDTKSGVEGEKVARLSLVDLASEE 295
SLM+EGNKSRTVAATNMN ESSRSHAVF + LT TL D KSG GEKV +LSLVDLA E
Sbjct: 196 SLMSEGNKSRTVAATNMNEESSRSHAVFKITLTHTLYDVKSGTSGEKVGKLSLVDLAGSE 255
Query: 296 IDSLMAEGNKSRTVAATNMNSESSRSHAVFSVVLTQTLVDTKSGVEGEKVARLSLVDLAG 355
R+ TK+G G++
Sbjct: 256 ------------------------RA--------------TKTGAAGDR----------- 266
Query: 356 SERAVKTGAVGERLKEGSNINKSLTTLGLVISKLADSTSSSKNKDKFVPYRDSVLTWLLK 415
LKEGSNINKSLTTLGLVIS LAD S+ KNK+KFVPYRDSVLTWLLK
Sbjct: 267 -------------LKEGSNINKSLTTLGLVISALADQ-SAGKNKNKFVPYRDSVLTWLLK 312
Query: 416 DNLGGNSKTVMVATVSPAADNYEETLSTLRYADRAK 451
D+LGGNSKT MVATVSPAADNY+ETLSTLRYADRAK
Sbjct: 313 DSLGGNSKTAMVATVSPAADNYDETLSTLRYADRAK 348
Score = 109 bits (272), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 80/210 (38%), Positives = 108/210 (51%), Gaps = 52/210 (24%)
Query: 1 MGSQDNKGIIPRLCDSLFDLIAKQESSELT----------YNPYIRT-----------PI 39
MG+ D G+IPRLC LF+ K+E+ E + YN +R +
Sbjct: 111 MGTADQPGLIPRLCSGLFERTQKEENEEQSFKVEVSYMEIYNEKVRDLLDPKGSRQTLKV 170
Query: 40 RKYEMI--YSCRVSMLK----------MIYGLKA-----------SNSTHAVFSVVLTQT 76
R++ ++ Y +S L M G K+ S+ +HAVF + LT T
Sbjct: 171 REHSVLGPYVDGLSKLAVTSYKDIESLMSEGNKSRTVAATNMNEESSRSHAVFKITLTHT 230
Query: 77 LVDTKSGVEGEKVARLSLVDLAGSERAVKTGAVGERLKEGSNINKQEALESMGISVQA-S 135
L D KSG GEKV +LSLVDLAGSERA KTGA G+RLKEGSNINK +L ++G+ + A +
Sbjct: 231 LYDVKSGTSGEKVGKLSLVDLAGSERATKTGAAGDRLKEGSNINK--SLTTLGLVISALA 288
Query: 136 GIKVEKNKYYLVNLNADPSLNELLVYYLKD 165
KNK V P + +L + LKD
Sbjct: 289 DQSAGKNKNKFV-----PYRDSVLTWLLKD 313
>pdb|1IA0|K Chain K, Kif1a Head-Microtubule Complex Structure In Atp-Form
pdb|2HXF|C Chain C, Kif1a Head-Microtubule Complex Structure In Amppnp-Form
pdb|2HXH|C Chain C, Kif1a Head-Microtubule Complex Structure In Adp-Form
Length = 394
Score = 210 bits (534), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 115/188 (61%), Positives = 137/188 (72%), Gaps = 6/188 (3%)
Query: 280 GEKVARLSLVDLAS-EEIDSLMAEGNKSRTVAATNMNSESSRSHAVFSVVLTQTLVDTKS 338
G V LS + + S +I LM GNK+RTVAATNMN SSRSHAVF+++ TQ D ++
Sbjct: 191 GPYVEDLSKLAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIFTQKRHDAET 250
Query: 339 GVEGEKVARLSLVDLAGSERAVKTGAVGERLKEGSNINKSLTTLGLVISKLADSTSSSKN 398
+ EKV+++SLVDLAGSERA TGA G RLKEG+NINKSLTTLG VIS LA+ S
Sbjct: 251 NITTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNK 310
Query: 399 KDK-----FVPYRDSVLTWLLKDNLGGNSKTVMVATVSPAADNYEETLSTLRYADRAKRI 453
K F+PYRDSVLTWLL++NLGGNS+T MVA +SPA NY+ETLSTLRYADRAK+I
Sbjct: 311 NKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQI 370
Query: 454 VNHAVDNL 461
N NL
Sbjct: 371 RNTVSVNL 378
Score = 137 bits (344), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 84/199 (42%), Positives = 119/199 (59%), Gaps = 16/199 (8%)
Query: 122 QEALESMGISVQASGIKVEKNKYYLVNLNAD------PSLNELLVYYLKDCTLIGSSDKN 175
Q A E + + A G Y ++ P L E L + D T N
Sbjct: 99 QHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIPQLCEDLFSRINDTT-------N 151
Query: 176 DIQLSGNLKINFGLFFCFQVHDLLDPKANKQSLKVREHNVLGPYVDGLSQLAVTSFQEID 235
D +S ++++++ +C +V DLL+PK NK +L+VREH +LGPYV+ LS+LAVTS+ +I
Sbjct: 152 D-NMSYSVEVSYMEIYCERVRDLLNPK-NKGNLRVREHPLLGPYVEDLSKLAVTSYNDIQ 209
Query: 236 SLMAEGNKSRTVAATNMNSESSRSHAVFSVVLTQTLVDTKSGVEGEKVARLSLVDLA-SE 294
LM GNK+RTVAATNMN SSRSHAVF+++ TQ D ++ + EKV+++SLVDLA SE
Sbjct: 210 DLMDSGNKARTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITTEKVSKISLVDLAGSE 269
Query: 295 EIDSLMAEGNKSRTVAATN 313
DS A+G + + A N
Sbjct: 270 RADSTGAKGTRLKEGANIN 288
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 63/179 (35%), Positives = 88/179 (49%), Gaps = 47/179 (26%)
Query: 1 MGSQ--DNKGIIPRLCDSLFDLIAKQESSELTY------------------NPYIRTPIR 40
MG Q D +GIIP+LC+ LF I + ++Y NP + +R
Sbjct: 124 MGKQEKDQQGIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKGNLR 183
Query: 41 KYEMI----YSCRVSMLK----------MIYGLKA-----------SNSTHAVFSVVLTQ 75
E Y +S L M G KA S+ +HAVF+++ TQ
Sbjct: 184 VREHPLLGPYVEDLSKLAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIFTQ 243
Query: 76 TLVDTKSGVEGEKVARLSLVDLAGSERAVKTGAVGERLKEGSNINKQEALESMGISVQA 134
D ++ + EKV+++SLVDLAGSERA TGA G RLKEG+NINK +L ++G + A
Sbjct: 244 KRHDAETNITTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINK--SLTTLGKVISA 300
>pdb|1I6I|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppcp
Length = 366
Score = 209 bits (533), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 113/182 (62%), Positives = 135/182 (74%), Gaps = 6/182 (3%)
Query: 280 GEKVARLSLVDLAS-EEIDSLMAEGNKSRTVAATNMNSESSRSHAVFSVVLTQTLVDTKS 338
G V LS + + S +I LM GNK+RTVAATNMN SSRSHAVF+++ TQ D ++
Sbjct: 175 GPYVEDLSKLAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIFTQKRHDAET 234
Query: 339 GVEGEKVARLSLVDLAGSERAVKTGAVGERLKEGSNINKSLTTLGLVISKLADSTSSSKN 398
+ EKV+++SLVDLAGSERA TGA G RLKEG+NINKSLTTLG VIS LA+ S
Sbjct: 235 NITTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNK 294
Query: 399 KDK-----FVPYRDSVLTWLLKDNLGGNSKTVMVATVSPAADNYEETLSTLRYADRAKRI 453
K F+PYRDSVLTWLL++NLGGNS+T MVA +SPA NY+ETLSTLRYADRAK+I
Sbjct: 295 NKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQI 354
Query: 454 VN 455
N
Sbjct: 355 RN 356
Score = 137 bits (344), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 86/204 (42%), Positives = 123/204 (60%), Gaps = 26/204 (12%)
Query: 122 QEALESMGISVQASGI-----------KVEKNKYYLVNLNADPSLNELLVYYLKDCTLIG 170
Q A E + + A G K EK++ ++ P L E L + D T
Sbjct: 83 QHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGII-----PQLCEDLFSRINDTT--- 134
Query: 171 SSDKNDIQLSGNLKINFGLFFCFQVHDLLDPKANKQSLKVREHNVLGPYVDGLSQLAVTS 230
ND +S ++++++ +C +V DLL+PK NK +L+VREH +LGPYV+ LS+LAVTS
Sbjct: 135 ----ND-NMSYSVEVSYMEIYCERVRDLLNPK-NKGNLRVREHPLLGPYVEDLSKLAVTS 188
Query: 231 FQEIDSLMAEGNKSRTVAATNMNSESSRSHAVFSVVLTQTLVDTKSGVEGEKVARLSLVD 290
+ +I LM GNK+RTVAATNMN SSRSHAVF+++ TQ D ++ + EKV+++SLVD
Sbjct: 189 YNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITTEKVSKISLVD 248
Query: 291 LA-SEEIDSLMAEGNKSRTVAATN 313
LA SE DS A+G + + A N
Sbjct: 249 LAGSERADSTGAKGTRLKEGANIN 272
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/179 (35%), Positives = 88/179 (49%), Gaps = 47/179 (26%)
Query: 1 MGSQ--DNKGIIPRLCDSLFDLIAKQESSELTY------------------NPYIRTPIR 40
MG Q D +GIIP+LC+ LF I + ++Y NP + +R
Sbjct: 108 MGKQEKDQQGIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKGNLR 167
Query: 41 KYEMI----YSCRVSMLK----------MIYGLKA-----------SNSTHAVFSVVLTQ 75
E Y +S L M G KA S+ +HAVF+++ TQ
Sbjct: 168 VREHPLLGPYVEDLSKLAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIFTQ 227
Query: 76 TLVDTKSGVEGEKVARLSLVDLAGSERAVKTGAVGERLKEGSNINKQEALESMGISVQA 134
D ++ + EKV+++SLVDLAGSERA TGA G RLKEG+NINK +L ++G + A
Sbjct: 228 KRHDAETNITTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINK--SLTTLGKVISA 284
>pdb|1I5S|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Adp
Length = 367
Score = 209 bits (532), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 113/182 (62%), Positives = 135/182 (74%), Gaps = 6/182 (3%)
Query: 280 GEKVARLSLVDLAS-EEIDSLMAEGNKSRTVAATNMNSESSRSHAVFSVVLTQTLVDTKS 338
G V LS + + S +I LM GNK+RTVAATNMN SSRSHAVF+++ TQ D ++
Sbjct: 175 GPYVEDLSKLAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIFTQKRHDAET 234
Query: 339 GVEGEKVARLSLVDLAGSERAVKTGAVGERLKEGSNINKSLTTLGLVISKLADSTSSSKN 398
+ EKV+++SLVDLAGSERA TGA G RLKEG+NINKSLTTLG VIS LA+ S
Sbjct: 235 NITTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNK 294
Query: 399 KDK-----FVPYRDSVLTWLLKDNLGGNSKTVMVATVSPAADNYEETLSTLRYADRAKRI 453
K F+PYRDSVLTWLL++NLGGNS+T MVA +SPA NY+ETLSTLRYADRAK+I
Sbjct: 295 NKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQI 354
Query: 454 VN 455
N
Sbjct: 355 RN 356
Score = 137 bits (344), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 86/204 (42%), Positives = 123/204 (60%), Gaps = 26/204 (12%)
Query: 122 QEALESMGISVQASGI-----------KVEKNKYYLVNLNADPSLNELLVYYLKDCTLIG 170
Q A E + + A G K EK++ ++ P L E L + D T
Sbjct: 83 QHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGII-----PQLCEDLFSRINDTT--- 134
Query: 171 SSDKNDIQLSGNLKINFGLFFCFQVHDLLDPKANKQSLKVREHNVLGPYVDGLSQLAVTS 230
ND +S ++++++ +C +V DLL+PK NK +L+VREH +LGPYV+ LS+LAVTS
Sbjct: 135 ----ND-NMSYSVEVSYMEIYCERVRDLLNPK-NKGNLRVREHPLLGPYVEDLSKLAVTS 188
Query: 231 FQEIDSLMAEGNKSRTVAATNMNSESSRSHAVFSVVLTQTLVDTKSGVEGEKVARLSLVD 290
+ +I LM GNK+RTVAATNMN SSRSHAVF+++ TQ D ++ + EKV+++SLVD
Sbjct: 189 YNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITTEKVSKISLVD 248
Query: 291 LA-SEEIDSLMAEGNKSRTVAATN 313
LA SE DS A+G + + A N
Sbjct: 249 LAGSERADSTGAKGTRLKEGANIN 272
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 63/179 (35%), Positives = 88/179 (49%), Gaps = 47/179 (26%)
Query: 1 MGSQ--DNKGIIPRLCDSLFDLIAKQESSELTY------------------NPYIRTPIR 40
MG Q D +GIIP+LC+ LF I + ++Y NP + +R
Sbjct: 108 MGKQEKDQQGIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKGNLR 167
Query: 41 KYEMI----YSCRVSMLK----------MIYGLKA-----------SNSTHAVFSVVLTQ 75
E Y +S L M G KA S+ +HAVF+++ TQ
Sbjct: 168 VREHPLLGPYVEDLSKLAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIFTQ 227
Query: 76 TLVDTKSGVEGEKVARLSLVDLAGSERAVKTGAVGERLKEGSNINKQEALESMGISVQA 134
D ++ + EKV+++SLVDLAGSERA TGA G RLKEG+NINK +L ++G + A
Sbjct: 228 KRHDAETNITTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINK--SLTTLGKVISA 284
>pdb|1VFV|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFW|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFX|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-mg-alfx
pdb|1VFZ|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-Mg-Vo4
pdb|2ZFI|A Chain A, Crystal Structure Of The Kif1a Motor Domain Before Mg
Release
pdb|2ZFJ|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-1
pdb|2ZFK|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-2
pdb|2ZFL|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-3
pdb|2ZFM|A Chain A, Crystal Structure Of The Kif1a Motor Domain After Mg
Release
Length = 366
Score = 209 bits (532), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 113/182 (62%), Positives = 134/182 (73%), Gaps = 6/182 (3%)
Query: 280 GEKVARLSLVDLAS-EEIDSLMAEGNKSRTVAATNMNSESSRSHAVFSVVLTQTLVDTKS 338
G V LS + + S +I LM GNK RTVAATNMN SSRSHAVF+++ TQ D ++
Sbjct: 175 GPYVEDLSKLAVTSYNDIQDLMDSGNKPRTVAATNMNETSSRSHAVFNIIFTQKRHDAET 234
Query: 339 GVEGEKVARLSLVDLAGSERAVKTGAVGERLKEGSNINKSLTTLGLVISKLADSTSSSKN 398
+ EKV+++SLVDLAGSERA TGA G RLKEG+NINKSLTTLG VIS LA+ S
Sbjct: 235 NITTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNK 294
Query: 399 KDK-----FVPYRDSVLTWLLKDNLGGNSKTVMVATVSPAADNYEETLSTLRYADRAKRI 453
K F+PYRDSVLTWLL++NLGGNS+T MVA +SPA NY+ETLSTLRYADRAK+I
Sbjct: 295 NKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQI 354
Query: 454 VN 455
N
Sbjct: 355 RN 356
Score = 136 bits (343), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 86/204 (42%), Positives = 122/204 (59%), Gaps = 26/204 (12%)
Query: 122 QEALESMGISVQASGI-----------KVEKNKYYLVNLNADPSLNELLVYYLKDCTLIG 170
Q A E + + A G K EK++ ++ P L E L + D T
Sbjct: 83 QHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGII-----PQLCEDLFSRINDTT--- 134
Query: 171 SSDKNDIQLSGNLKINFGLFFCFQVHDLLDPKANKQSLKVREHNVLGPYVDGLSQLAVTS 230
ND +S ++++++ +C +V DLL+PK NK +L+VREH +LGPYV+ LS+LAVTS
Sbjct: 135 ----ND-NMSYSVEVSYMEIYCERVRDLLNPK-NKGNLRVREHPLLGPYVEDLSKLAVTS 188
Query: 231 FQEIDSLMAEGNKSRTVAATNMNSESSRSHAVFSVVLTQTLVDTKSGVEGEKVARLSLVD 290
+ +I LM GNK RTVAATNMN SSRSHAVF+++ TQ D ++ + EKV+++SLVD
Sbjct: 189 YNDIQDLMDSGNKPRTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITTEKVSKISLVD 248
Query: 291 LA-SEEIDSLMAEGNKSRTVAATN 313
LA SE DS A+G + + A N
Sbjct: 249 LAGSERADSTGAKGTRLKEGANIN 272
Score = 78.6 bits (192), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 86/179 (48%), Gaps = 47/179 (26%)
Query: 1 MGSQ--DNKGIIPRLCDSLFDLIAKQESSELTY------------------NPYIRTPIR 40
MG Q D +GIIP+LC+ LF I + ++Y NP + +R
Sbjct: 108 MGKQEKDQQGIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKGNLR 167
Query: 41 KYEM---------IYSCRVSMLKMIYGL----------------KASNSTHAVFSVVLTQ 75
E + V+ I L + S+ +HAVF+++ TQ
Sbjct: 168 VREHPLLGPYVEDLSKLAVTSYNDIQDLMDSGNKPRTVAATNMNETSSRSHAVFNIIFTQ 227
Query: 76 TLVDTKSGVEGEKVARLSLVDLAGSERAVKTGAVGERLKEGSNINKQEALESMGISVQA 134
D ++ + EKV+++SLVDLAGSERA TGA G RLKEG+NINK +L ++G + A
Sbjct: 228 KRHDAETNITTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINK--SLTTLGKVISA 284
>pdb|2OWM|A Chain A, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|B Chain B, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|C Chain C, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|D Chain D, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
Length = 443
Score = 190 bits (482), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 110/202 (54%), Positives = 134/202 (66%), Gaps = 18/202 (8%)
Query: 275 KSGVEGEKVARLSLVDLAS-EEIDSLMAEGNKSRTVAATNMNSESSRSHAVFSVVLTQTL 333
+S EG V L+ V + EEI M G+ SRTVA+T MN SSRSHAVF+++L Q
Sbjct: 221 ESPTEGPYVKDLTEVPVRGLEEIIRWMRIGDGSRTVASTKMNDTSSRSHAVFTIMLKQIH 280
Query: 334 VDTKSGVEGEKVARLSLVDLAGSERAVKTGAVGERLKEGSNINKSLTTLGLVISKLADST 393
D ++ E+ +R+ LVDLAGSERA T A G+RL+EGSNINKSLTTLG VI+ LAD
Sbjct: 281 HDLETDDTTERSSRIRLVDLAGSERAKSTEATGQRLREGSNINKSLTTLGRVIAALADPK 340
Query: 394 SSSKNK---------------DKFVPYRDSVLTWLLKDNLGGNSKTVMVATVSPAADNYE 438
SS+ + VPYRDSVLTWLLKD+LGGNSKT M+A +SP +Y+
Sbjct: 341 SSASRPSSPVKSGRGRTPGPANSVVPYRDSVLTWLLKDSLGGNSKTAMIACISPT--DYD 398
Query: 439 ETLSTLRYADRAKRIVNHAVDN 460
ETLSTLRYAD+AKRI AV N
Sbjct: 399 ETLSTLRYADQAKRIRTRAVVN 420
Score = 79.7 bits (195), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 87/187 (46%), Gaps = 59/187 (31%)
Query: 1 MGSQDNKGIIPRLCDSLFDLIA--KQESSELTYN-------------------------- 32
MG+ D G+IPR C+ LF IA + E+ ++YN
Sbjct: 155 MGTPDQPGLIPRTCEDLFQRIASAQDETPNISYNVKVSYFEVYNEHVRDLLAPVVPNKPP 214
Query: 33 ------------PYIR----TPIRKYEMIYSCRVSMLKMIYGLKASNST---------HA 67
PY++ P+R E I + +++ G + ST HA
Sbjct: 215 YYLKVRESPTEGPYVKDLTEVPVRGLEEI----IRWMRIGDGSRTVASTKMNDTSSRSHA 270
Query: 68 VFSVVLTQTLVDTKSGVEGEKVARLSLVDLAGSERAVKTGAVGERLKEGSNINKQEALES 127
VF+++L Q D ++ E+ +R+ LVDLAGSERA T A G+RL+EGSNINK +L +
Sbjct: 271 VFTIMLKQIHHDLETDDTTERSSRIRLVDLAGSERAKSTEATGQRLREGSNINK--SLTT 328
Query: 128 MGISVQA 134
+G + A
Sbjct: 329 LGRVIAA 335
>pdb|3B6U|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
pdb|3B6U|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
Length = 372
Score = 171 bits (433), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 96/172 (55%), Positives = 122/172 (70%), Gaps = 13/172 (7%)
Query: 287 SLVDLASEEIDSLMAEGNKSRTVAATNMNSESSRSHAVFSVVLTQTLVDTKSGVEGE--- 343
S V + +EI+ +M GN++R+V ATNMN SSRSHA+F + + + V G++GE
Sbjct: 194 SFVTKSVKEIEHVMNVGNQNRSVGATNMNEHSSRSHAIFVITIECSEV----GLDGENHI 249
Query: 344 KVARLSLVDLAGSERAVKTGAVGERLKEGSNINKSLTTLGLVISKLADSTSSSKNKDKFV 403
+V +L+LVDLAGSER KTGA GERLKE + IN SL+ LG VIS L D S+ +
Sbjct: 250 RVGKLNLVDLAGSERQAKTGAQGERLKEATKINLSLSALGNVISALVDGKSTH------I 303
Query: 404 PYRDSVLTWLLKDNLGGNSKTVMVATVSPAADNYEETLSTLRYADRAKRIVN 455
PYRDS LT LL+D+LGGN+KTVMVA V PA+ N EETL+TLRYA+RAK I N
Sbjct: 304 PYRDSKLTRLLQDSLGGNAKTVMVANVGPASYNVEETLTTLRYANRAKNIKN 355
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 43/62 (69%), Gaps = 7/62 (11%)
Query: 62 SNSTHAVFSVVLTQTLVDTKSGVEGE---KVARLSLVDLAGSERAVKTGAVGERLKEGSN 118
S+ +HA+F + + + V G++GE +V +L+LVDLAGSER KTGA GERLKE +
Sbjct: 225 SSRSHAIFVITIECSEV----GLDGENHIRVGKLNLVDLAGSERQAKTGAQGERLKEATK 280
Query: 119 IN 120
IN
Sbjct: 281 IN 282
>pdb|2VVG|A Chain A, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
pdb|2VVG|B Chain B, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
Length = 350
Score = 163 bits (412), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 89/162 (54%), Positives = 116/162 (71%), Gaps = 11/162 (6%)
Query: 295 EIDSLMAEGNKSRTVAATNMNSESSRSHAVFSV-VLTQTLVDTKSGVEGEKVARLSLVDL 353
E+ +LM +G +R VAAT MN SSRSH++F V + +++ K + +V +L+LVDL
Sbjct: 186 ELSALMDKGFANRHVAATQMNDTSSRSHSIFMVRIECSEVIENKEVI---RVGKLNLVDL 242
Query: 354 AGSERAVKTGAVGERLKEGSNINKSLTTLGLVISKLADSTSSSKNKDKFVPYRDSVLTWL 413
AGSER KTGA GE L EG+ IN SL+ LGLVISKL + + +PYRDS LT L
Sbjct: 243 AGSERQSKTGATGETLVEGAKINLSLSALGLVISKLVEGAT-------HIPYRDSKLTRL 295
Query: 414 LKDNLGGNSKTVMVATVSPAADNYEETLSTLRYADRAKRIVN 455
L+D+LGGNSKT+M A +SPA+ NY+ET+STLRYADRAK+I N
Sbjct: 296 LQDSLGGNSKTLMCANISPASTNYDETMSTLRYADRAKQIKN 337
>pdb|3LRE|A Chain A, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
pdb|3LRE|B Chain B, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
Length = 355
Score = 161 bits (408), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 87/162 (53%), Positives = 118/162 (72%), Gaps = 5/162 (3%)
Query: 292 ASEEIDSLMAEGNKSRTVAATNMNSESSRSHAVFSVVLTQTLVDTKSGVEGEKVARLSLV 351
+SEEI L+ GNK+RT T+MN+ SSRSHAVF + L Q T S + ++A++SL+
Sbjct: 199 SSEEILHLLDNGNKNRTQHPTDMNATSSRSHAVFQIYLRQQ-DKTASINQNVRIAKMSLI 257
Query: 352 DLAGSERAVKTGAVGERLKEGSNINKSLTTLGLVISKLADSTSSSKNKDKFVPYRDSVLT 411
DLAGSERA +GA G R EG+NIN+SL LG VI+ LADS K K++ +PYR+S LT
Sbjct: 258 DLAGSERASTSGAKGTRFVEGTNINRSLLALGNVINALADS----KRKNQHIPYRNSKLT 313
Query: 412 WLLKDNLGGNSKTVMVATVSPAADNYEETLSTLRYADRAKRI 453
LLKD+LGGN +T+M+A VSP++ Y++T +TL+YA+RAK I
Sbjct: 314 RLLKDSLGGNCQTIMIAAVSPSSVFYDDTYNTLKYANRAKDI 355
Score = 69.3 bits (168), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 52/123 (42%), Positives = 70/123 (56%), Gaps = 7/123 (5%)
Query: 194 QVHDLLDPKANKQSLKVREHNVLGPYVDGLSQLAVTSFQEIDSLMAEGNKSRTVAATNMN 253
Q+ DLL N L VRE G V GL+ S +EI L+ GNK+RT T+MN
Sbjct: 166 QIRDLL---VNSGPLAVREDTQKGVVVHGLTLHQPKSSEEILHLLDNGNKNRTQHPTDMN 222
Query: 254 SESSRSHAVFSVVLTQTLVDTKSGVEGEKVARLSLVDLA-SEEIDSLMAEGNKSRTVAAT 312
+ SSRSHAVF + L Q T S + ++A++SL+DLA SE + A+G +R V T
Sbjct: 223 ATSSRSHAVFQIYLRQQ-DKTASINQNVRIAKMSLIDLAGSERASTSGAKG--TRFVEGT 279
Query: 313 NMN 315
N+N
Sbjct: 280 NIN 282
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 58/104 (55%), Gaps = 10/104 (9%)
Query: 62 SNSTHAVFSVVLTQTLVDTKSGVEGEKVARLSLVDLAGSERAVKTGAVGERLKEGSNINK 121
S+ +HAVF + L Q T S + ++A++SL+DLAGSERA +GA G R EG+NIN+
Sbjct: 225 SSRSHAVFQIYLRQQ-DKTASINQNVRIAKMSLIDLAGSERASTSGAKGTRFVEGTNINR 283
Query: 122 QEALESMGISVQASGIKVEKNKYYLVNLNADPSLNELLVYYLKD 165
+L ++G + A KN++ P N L LKD
Sbjct: 284 --SLLALGNVINALADSKRKNQHI-------PYRNSKLTRLLKD 318
>pdb|1GOJ|A Chain A, Structure Of A Fast Kinesin: Implications For Atpase
Mechanism And Interactions With Microtubules
Length = 355
Score = 152 bits (385), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 84/164 (51%), Positives = 110/164 (67%), Gaps = 10/164 (6%)
Query: 294 EEIDSLMAEGNKSRTVAATNMNSESSRSHAVFSVVLTQTLVDTKSGVEGEKVARLSLVDL 353
+E+ +M G +R VAATNMN ESSRSH++F + +TQ V+T S G+ L LVDL
Sbjct: 181 QEVYEVMRRGGNARAVAATNMNQESSRSHSIFVITITQKNVETGSAKSGQ----LFLVDL 236
Query: 354 AGSERAVKTGAVGERLKEGSNINKSLTTLGLVISKLADSTSSSKNKDKFVPYRDSVLTWL 413
AGSE+ KTGA G+ L+E INKSL+ LG+VI+ L D SS VPYRDS LT +
Sbjct: 237 AGSEKVGKTGASGQTLEEAKKINKSLSALGMVINALTDGKSS------HVPYRDSKLTRI 290
Query: 414 LKDNLGGNSKTVMVATVSPAADNYEETLSTLRYADRAKRIVNHA 457
L+++LGGNS+T ++ SP++ N ETLSTLR+ RAK I N A
Sbjct: 291 LQESLGGNSRTTLIINCSPSSYNDAETLSTLRFGMRAKSIKNKA 334
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 69/113 (61%), Gaps = 6/113 (5%)
Query: 183 LKINFGLFFCFQVHDLLDPKANKQSLKVREHNVLGPYVDGLSQLAVTSFQEIDSLMAEGN 242
+++++ + ++ DLL P+ + +L V E G YV GL ++ V+S QE+ +M G
Sbjct: 134 VRVSYMEIYMERIRDLLAPQND--NLPVHEEKNRGVYVKGLLEIYVSSVQEVYEVMRRGG 191
Query: 243 KSRTVAATNMNSESSRSHAVFSVVLTQTLVDTKSGVEGEKVARLSLVDLASEE 295
+R VAATNMN ESSRSH++F + +TQ V+T S G+ L LVDLA E
Sbjct: 192 NARAVAATNMNQESSRSHSIFVITITQKNVETGSAKSGQ----LFLVDLAGSE 240
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 48/75 (64%), Gaps = 6/75 (8%)
Query: 60 KASNSTHAVFSVVLTQTLVDTKSGVEGEKVARLSLVDLAGSERAVKTGAVGERLKEGSNI 119
+ S+ +H++F + +TQ V+T S G+ L LVDLAGSE+ KTGA G+ L+E I
Sbjct: 203 QESSRSHSIFVITITQKNVETGSAKSGQ----LFLVDLAGSEKVGKTGASGQTLEEAKKI 258
Query: 120 NKQEALESMGISVQA 134
NK +L ++G+ + A
Sbjct: 259 NK--SLSALGMVINA 271
>pdb|3HQD|A Chain A, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3HQD|B Chain B, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3KEN|A Chain A, Human Eg5 In Complex With S-Trityl-L-Cysteine
Length = 369
Score = 144 bits (364), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 82/164 (50%), Positives = 113/164 (68%), Gaps = 12/164 (7%)
Query: 294 EEIDSLMAEGNKSRTVAATNMNSESSRSHAVFSVV--LTQTLVDTKSGVEGEKVARLSLV 351
+E+ ++ +G RT AAT MN+ SSRSH+VFSV + +T +D G E K+ +L+LV
Sbjct: 208 DEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTID---GEELVKIGKLNLV 264
Query: 352 DLAGSERAVKTGAVGERLKEGSNINKSLTTLGLVISKLADSTSSSKNKDKFVPYRDSVLT 411
DLAGSE ++GAV +R +E NIN+SL TLG VI+ L + T VPYR+S LT
Sbjct: 265 DLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTP-------HVPYRESKLT 317
Query: 412 WLLKDNLGGNSKTVMVATVSPAADNYEETLSTLRYADRAKRIVN 455
+L+D+LGG ++T ++AT+SPA+ N EETLSTL YA RAK I+N
Sbjct: 318 RILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILN 361
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 42/62 (67%), Gaps = 5/62 (8%)
Query: 62 SNSTHAVFSVV--LTQTLVDTKSGVEGEKVARLSLVDLAGSERAVKTGAVGERLKEGSNI 119
S+ +H+VFSV + +T +D G E K+ +L+LVDLAGSE ++GAV +R +E NI
Sbjct: 232 SSRSHSVFSVTIHMKETTID---GEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNI 288
Query: 120 NK 121
N+
Sbjct: 289 NQ 290
>pdb|4A28|A Chain A, Eg5-2
pdb|4A28|B Chain B, Eg5-2
Length = 368
Score = 144 bits (363), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 82/164 (50%), Positives = 113/164 (68%), Gaps = 12/164 (7%)
Query: 294 EEIDSLMAEGNKSRTVAATNMNSESSRSHAVFSVV--LTQTLVDTKSGVEGEKVARLSLV 351
+E+ ++ +G RT AAT MN+ SSRSH+VFSV + +T +D G E K+ +L+LV
Sbjct: 208 DEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTID---GEELVKIGKLNLV 264
Query: 352 DLAGSERAVKTGAVGERLKEGSNINKSLTTLGLVISKLADSTSSSKNKDKFVPYRDSVLT 411
DLAGSE ++GAV +R +E NIN+SL TLG VI+ L + T VPYR+S LT
Sbjct: 265 DLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTP-------HVPYRESKLT 317
Query: 412 WLLKDNLGGNSKTVMVATVSPAADNYEETLSTLRYADRAKRIVN 455
+L+D+LGG ++T ++AT+SPA+ N EETLSTL YA RAK I+N
Sbjct: 318 RILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILN 361
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 42/62 (67%), Gaps = 5/62 (8%)
Query: 62 SNSTHAVFSVV--LTQTLVDTKSGVEGEKVARLSLVDLAGSERAVKTGAVGERLKEGSNI 119
S+ +H+VFSV + +T +D G E K+ +L+LVDLAGSE ++GAV +R +E NI
Sbjct: 232 SSRSHSVFSVTIHMKETTID---GEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNI 288
Query: 120 NK 121
N+
Sbjct: 289 NQ 290
>pdb|1II6|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1II6|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1YRS|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|1YRS|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2FME|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2FME|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2GM1|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|D Chain D, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|E Chain E, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2G1Q|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2G1Q|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2PG2|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2PG2|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2UYI|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYI|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYM|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|2UYM|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|3K5E|A Chain A, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K5E|B Chain B, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K3B|A Chain A, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3K3B|B Chain B, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3L9H|A Chain A, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|3L9H|B Chain B, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|2X7C|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7C|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7D|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7D|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7E|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2X7E|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2WOG|A Chain A, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|B Chain B, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|C Chain C, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2X2R|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2XAE|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|4A50|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
2-amino-5-(3-methylphenyl)-5,5-diphenylpentanoic Acid
pdb|4A51|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|D Chain D, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|E Chain E, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|F Chain F, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|G Chain G, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A5Y|A Chain A, Eg5-Inhibitor Complex
pdb|4A5Y|B Chain B, Eg5-Inhibitor Complex
pdb|4A5Y|C Chain C, Eg5-Inhibitor Complex
Length = 368
Score = 144 bits (363), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 82/164 (50%), Positives = 113/164 (68%), Gaps = 12/164 (7%)
Query: 294 EEIDSLMAEGNKSRTVAATNMNSESSRSHAVFSVV--LTQTLVDTKSGVEGEKVARLSLV 351
+E+ ++ +G RT AAT MN+ SSRSH+VFSV + +T +D G E K+ +L+LV
Sbjct: 208 DEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTID---GEELVKIGKLNLV 264
Query: 352 DLAGSERAVKTGAVGERLKEGSNINKSLTTLGLVISKLADSTSSSKNKDKFVPYRDSVLT 411
DLAGSE ++GAV +R +E NIN+SL TLG VI+ L + T VPYR+S LT
Sbjct: 265 DLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTP-------HVPYRESKLT 317
Query: 412 WLLKDNLGGNSKTVMVATVSPAADNYEETLSTLRYADRAKRIVN 455
+L+D+LGG ++T ++AT+SPA+ N EETLSTL YA RAK I+N
Sbjct: 318 RILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILN 361
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 42/62 (67%), Gaps = 5/62 (8%)
Query: 62 SNSTHAVFSVV--LTQTLVDTKSGVEGEKVARLSLVDLAGSERAVKTGAVGERLKEGSNI 119
S+ +H+VFSV + +T +D G E K+ +L+LVDLAGSE ++GAV +R +E NI
Sbjct: 232 SSRSHSVFSVTIHMKETTID---GEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNI 288
Query: 120 NK 121
N+
Sbjct: 289 NQ 290
>pdb|1Q0B|A Chain A, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|1Q0B|B Chain B, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|2FKY|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FKY|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FL2|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL2|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL6|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2FL6|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2IEH|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2IEH|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2Q2Y|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Y|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Z|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|2Q2Z|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|3CJO|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 30
pdb|3CJO|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 30
Length = 367
Score = 144 bits (363), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 82/164 (50%), Positives = 113/164 (68%), Gaps = 12/164 (7%)
Query: 294 EEIDSLMAEGNKSRTVAATNMNSESSRSHAVFSVV--LTQTLVDTKSGVEGEKVARLSLV 351
+E+ ++ +G RT AAT MN+ SSRSH+VFSV + +T +D G E K+ +L+LV
Sbjct: 207 DEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTID---GEELVKIGKLNLV 263
Query: 352 DLAGSERAVKTGAVGERLKEGSNINKSLTTLGLVISKLADSTSSSKNKDKFVPYRDSVLT 411
DLAGSE ++GAV +R +E NIN+SL TLG VI+ L + T VPYR+S LT
Sbjct: 264 DLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTP-------HVPYRESKLT 316
Query: 412 WLLKDNLGGNSKTVMVATVSPAADNYEETLSTLRYADRAKRIVN 455
+L+D+LGG ++T ++AT+SPA+ N EETLSTL YA RAK I+N
Sbjct: 317 RILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILN 360
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 42/62 (67%), Gaps = 5/62 (8%)
Query: 62 SNSTHAVFSVV--LTQTLVDTKSGVEGEKVARLSLVDLAGSERAVKTGAVGERLKEGSNI 119
S+ +H+VFSV + +T +D G E K+ +L+LVDLAGSE ++GAV +R +E NI
Sbjct: 231 SSRSHSVFSVTIHMKETTID---GEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNI 287
Query: 120 NK 121
N+
Sbjct: 288 NQ 289
>pdb|4A1Z|A Chain A, Eg5-1
pdb|4A1Z|B Chain B, Eg5-1
Length = 368
Score = 144 bits (363), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 82/164 (50%), Positives = 113/164 (68%), Gaps = 12/164 (7%)
Query: 294 EEIDSLMAEGNKSRTVAATNMNSESSRSHAVFSVV--LTQTLVDTKSGVEGEKVARLSLV 351
+E+ ++ +G RT AAT MN+ SSRSH+VFSV + +T +D G E K+ +L+LV
Sbjct: 208 DEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTID---GEELVKIGKLNLV 264
Query: 352 DLAGSERAVKTGAVGERLKEGSNINKSLTTLGLVISKLADSTSSSKNKDKFVPYRDSVLT 411
DLAGSE ++GAV +R +E NIN+SL TLG VI+ L + T VPYR+S LT
Sbjct: 265 DLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTP-------HVPYRESKLT 317
Query: 412 WLLKDNLGGNSKTVMVATVSPAADNYEETLSTLRYADRAKRIVN 455
+L+D+LGG ++T ++AT+SPA+ N EETLSTL YA RAK I+N
Sbjct: 318 RILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILN 361
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 42/62 (67%), Gaps = 5/62 (8%)
Query: 62 SNSTHAVFSVV--LTQTLVDTKSGVEGEKVARLSLVDLAGSERAVKTGAVGERLKEGSNI 119
S+ +H+VFSV + +T +D G E K+ +L+LVDLAGSE ++GAV +R +E NI
Sbjct: 232 SSRSHSVFSVTIHMKETTID---GEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNI 288
Query: 120 NK 121
N+
Sbjct: 289 NQ 290
>pdb|4AQV|C Chain C, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian
Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom
Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain
In The Ampppnp State.
pdb|4AQW|C Chain C, Model Of Human Kinesin-5 Motor Domain (1ii6, 3hqd) And
Mammalian Tubulin Heterodimer (1jff) Docked Into The
9.5- Angstrom Cryo-em Map Of Microtubule-bound Kinesin-5
Motor Domain In The Rigor State
Length = 373
Score = 144 bits (363), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 82/164 (50%), Positives = 113/164 (68%), Gaps = 12/164 (7%)
Query: 294 EEIDSLMAEGNKSRTVAATNMNSESSRSHAVFSVV--LTQTLVDTKSGVEGEKVARLSLV 351
+E+ ++ +G RT AAT MN+ SSRSH+VFSV + +T +D G E K+ +L+LV
Sbjct: 208 DEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTID---GEELVKIGKLNLV 264
Query: 352 DLAGSERAVKTGAVGERLKEGSNINKSLTTLGLVISKLADSTSSSKNKDKFVPYRDSVLT 411
DLAGSE ++GAV +R +E NIN+SL TLG VI+ L + T VPYR+S LT
Sbjct: 265 DLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTP-------HVPYRESKLT 317
Query: 412 WLLKDNLGGNSKTVMVATVSPAADNYEETLSTLRYADRAKRIVN 455
+L+D+LGG ++T ++AT+SPA+ N EETLSTL YA RAK I+N
Sbjct: 318 RILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILN 361
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 42/62 (67%), Gaps = 5/62 (8%)
Query: 62 SNSTHAVFSVV--LTQTLVDTKSGVEGEKVARLSLVDLAGSERAVKTGAVGERLKEGSNI 119
S+ +H+VFSV + +T +D G E K+ +L+LVDLAGSE ++GAV +R +E NI
Sbjct: 232 SSRSHSVFSVTIHMKETTID---GEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNI 288
Query: 120 NK 121
N+
Sbjct: 289 NQ 290
>pdb|4AP0|A Chain A, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|B Chain B, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|C Chain C, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|D Chain D, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
Length = 370
Score = 144 bits (363), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 82/164 (50%), Positives = 113/164 (68%), Gaps = 12/164 (7%)
Query: 294 EEIDSLMAEGNKSRTVAATNMNSESSRSHAVFSVV--LTQTLVDTKSGVEGEKVARLSLV 351
+E+ ++ +G RT AAT MN+ SSRSH+VFSV + +T +D G E K+ +L+LV
Sbjct: 210 DEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTID---GEELVKIGKLNLV 266
Query: 352 DLAGSERAVKTGAVGERLKEGSNINKSLTTLGLVISKLADSTSSSKNKDKFVPYRDSVLT 411
DLAGSE ++GAV +R +E NIN+SL TLG VI+ L + T VPYR+S LT
Sbjct: 267 DLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTP-------HVPYRESKLT 319
Query: 412 WLLKDNLGGNSKTVMVATVSPAADNYEETLSTLRYADRAKRIVN 455
+L+D+LGG ++T ++AT+SPA+ N EETLSTL YA RAK I+N
Sbjct: 320 RILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILN 363
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 42/62 (67%), Gaps = 5/62 (8%)
Query: 62 SNSTHAVFSVV--LTQTLVDTKSGVEGEKVARLSLVDLAGSERAVKTGAVGERLKEGSNI 119
S+ +H+VFSV + +T +D G E K+ +L+LVDLAGSE ++GAV +R +E NI
Sbjct: 234 SSRSHSVFSVTIHMKETTID---GEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNI 290
Query: 120 NK 121
N+
Sbjct: 291 NQ 292
>pdb|1X88|A Chain A, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
pdb|1X88|B Chain B, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
Length = 359
Score = 144 bits (363), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 82/164 (50%), Positives = 113/164 (68%), Gaps = 12/164 (7%)
Query: 294 EEIDSLMAEGNKSRTVAATNMNSESSRSHAVFSVV--LTQTLVDTKSGVEGEKVARLSLV 351
+E+ ++ +G RT AAT MN+ SSRSH+VFSV + +T +D G E K+ +L+LV
Sbjct: 199 DEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTID---GEELVKIGKLNLV 255
Query: 352 DLAGSERAVKTGAVGERLKEGSNINKSLTTLGLVISKLADSTSSSKNKDKFVPYRDSVLT 411
DLAGSE ++GAV +R +E NIN+SL TLG VI+ L + T VPYR+S LT
Sbjct: 256 DLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTP-------HVPYRESKLT 308
Query: 412 WLLKDNLGGNSKTVMVATVSPAADNYEETLSTLRYADRAKRIVN 455
+L+D+LGG ++T ++AT+SPA+ N EETLSTL YA RAK I+N
Sbjct: 309 RILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILN 352
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 42/62 (67%), Gaps = 5/62 (8%)
Query: 62 SNSTHAVFSVV--LTQTLVDTKSGVEGEKVARLSLVDLAGSERAVKTGAVGERLKEGSNI 119
S+ +H+VFSV + +T +D G E K+ +L+LVDLAGSE ++GAV +R +E NI
Sbjct: 223 SSRSHSVFSVTIHMKETTID---GEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNI 279
Query: 120 NK 121
N+
Sbjct: 280 NQ 281
>pdb|3ZCW|A Chain A, Eg5 - New Allosteric Binding Site
Length = 348
Score = 144 bits (362), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 82/164 (50%), Positives = 113/164 (68%), Gaps = 12/164 (7%)
Query: 294 EEIDSLMAEGNKSRTVAATNMNSESSRSHAVFSVV--LTQTLVDTKSGVEGEKVARLSLV 351
+E+ ++ +G RT AAT MN+ SSRSH+VFSV + +T +D G E K+ +L+LV
Sbjct: 193 DEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTID---GEELVKIGKLNLV 249
Query: 352 DLAGSERAVKTGAVGERLKEGSNINKSLTTLGLVISKLADSTSSSKNKDKFVPYRDSVLT 411
DLAGSE ++GAV +R +E NIN+SL TLG VI+ L + T VPYR+S LT
Sbjct: 250 DLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTP-------HVPYRESKLT 302
Query: 412 WLLKDNLGGNSKTVMVATVSPAADNYEETLSTLRYADRAKRIVN 455
+L+D+LGG ++T ++AT+SPA+ N EETLSTL YA RAK I+N
Sbjct: 303 RILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILN 346
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 42/62 (67%), Gaps = 5/62 (8%)
Query: 62 SNSTHAVFSVV--LTQTLVDTKSGVEGEKVARLSLVDLAGSERAVKTGAVGERLKEGSNI 119
S+ +H+VFSV + +T +D G E K+ +L+LVDLAGSE ++GAV +R +E NI
Sbjct: 217 SSRSHSVFSVTIHMKETTID---GEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNI 273
Query: 120 NK 121
N+
Sbjct: 274 NQ 275
>pdb|4A14|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 142 bits (359), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 79/162 (48%), Positives = 106/162 (65%), Gaps = 8/162 (4%)
Query: 294 EEIDSLMAEGNKSRTVAATNMNSESSRSHAVFSVVLTQ---TLVDTKSGVEGEK-VARLS 349
+E+ SL+ GN +R AT++N SSRSH VF+V L Q G+ V++
Sbjct: 187 DEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLEQRGRAPSRLPRPAPGQLLVSKFH 246
Query: 350 LVDLAGSERAVKTGAVGERLKEGSNINKSLTTLGLVISKLADSTSSSKNKDKFVPYRDSV 409
VDLAGSER +KTG+ GERLKE IN SL LG VIS L D + + +PYRDS
Sbjct: 247 FVDLAGSERVLKTGSTGERLKESIQINSSLLALGNVISALGDP----QRRGSHIPYRDSK 302
Query: 410 LTWLLKDNLGGNSKTVMVATVSPAADNYEETLSTLRYADRAK 451
+T +LKD+LGGN+KTVM+A VSP++ +++ETL+TL YA RA+
Sbjct: 303 ITRILKDSLGGNAKTVMIACVSPSSSDFDETLNTLNYASRAQ 344
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 53/97 (54%), Gaps = 1/97 (1%)
Query: 173 DKNDIQLSGNLKINFGLFFCFQVHDLLDPKANKQSLKVREHNVLGPYVDGLSQLAVTSFQ 232
D+ND+ L + +++ + + DLL+ + +++RE + G+ ++ V
Sbjct: 129 DENDL-LDCLVHVSYLEVYKEEFRDLLEVGTASRDIQLREDERGNVVLCGVKEVDVEGLD 187
Query: 233 EIDSLMAEGNKSRTVAATNMNSESSRSHAVFSVVLTQ 269
E+ SL+ GN +R AT++N SSRSH VF+V L Q
Sbjct: 188 EVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLEQ 224
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 44/79 (55%), Gaps = 6/79 (7%)
Query: 62 SNSTHAVFSVVLTQ---TLVDTKSGVEGEK-VARLSLVDLAGSERAVKTGAVGERLKEGS 117
S+ +H VF+V L Q G+ V++ VDLAGSER +KTG+ GERLKE
Sbjct: 211 SSRSHTVFTVTLEQRGRAPSRLPRPAPGQLLVSKFHFVDLAGSERVLKTGSTGERLKESI 270
Query: 118 NINKQEALESMGISVQASG 136
IN +L ++G + A G
Sbjct: 271 QINS--SLLALGNVISALG 287
>pdb|3H4S|A Chain A, Structure Of The Complex Of A Mitotic Kinesin With Its
Calcium Binding Regulator
Length = 386
Score = 139 bits (349), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 84/183 (45%), Positives = 114/183 (62%), Gaps = 13/183 (7%)
Query: 273 DTKSGVEGEKVARLSLVDLASEEIDSLMAEGNKSRTVAATNMNSESSRSHAVFSVVLTQT 332
D+K V E V + + L EE+ ++ G++ R V+ TNMN ESSRSH + SVV+
Sbjct: 168 DSKGMVFVENVTTIPISTL--EELRMILERGSERRHVSGTNMNEESSRSHLILSVVIESI 225
Query: 333 LVDTKSGVEGEKVARLSLVDLAGSERAVKTGAVGERLKEGSNINKSLTTLGLVISKLADS 392
+ T+S G +LS VDLAGSER K+G+ G +LKE +INKSL+ LG VI L
Sbjct: 226 DLQTQSAARG----KLSFVDLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVIGAL--- 278
Query: 393 TSSSKNKDKFVPYRDSVLTWLLKDNLGGNSKTVMVATVSPAADNYEETLSTLRYADRAKR 452
SS N+ +PYR+ LT L+ D+LGGN+KT+M VSPA N +ET ++L YA R +
Sbjct: 279 --SSGNQ--HIPYRNHKLTMLMSDSLGGNAKTLMFVNVSPAESNLDETYNSLLYASRVRT 334
Query: 453 IVN 455
IVN
Sbjct: 335 IVN 337
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 70/119 (58%), Gaps = 6/119 (5%)
Query: 197 DLLDPK-ANKQSLKVREHNVLGPYVDGLSQLAVTSFQEIDSLMAEGNKSRTVAATNMNSE 255
DLL PK A + L++++ + +V+ ++ + +++ +E+ ++ G++ R V+ TNMN E
Sbjct: 151 DLLLPKSARRLKLEIKKDSKGMVFVENVTTIPISTLEELRMILERGSERRHVSGTNMNEE 210
Query: 256 SSRSHAVFSVVLTQTLVDTKSGVEGEKVARLSLVDLA-SEEIDSLMAEGNKSRTVAATN 313
SSRSH + SVV+ + T+S G +LS VDLA SE + + GN+ + + N
Sbjct: 211 SSRSHLILSVVIESIDLQTQSAARG----KLSFVDLAGSERVKKSGSAGNQLKEAQSIN 265
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 43/68 (63%), Gaps = 6/68 (8%)
Query: 62 SNSTHAVFSVVLTQTLVDTKSGVEGEKVARLSLVDLAGSERAVKTGAVGERLKEGSNINK 121
S+ +H + SVV+ + T+S G +LS VDLAGSER K+G+ G +LKE +INK
Sbjct: 211 SSRSHLILSVVIESIDLQTQSAARG----KLSFVDLAGSERVKKSGSAGNQLKEAQSINK 266
Query: 122 QEALESMG 129
+L ++G
Sbjct: 267 --SLSALG 272
>pdb|3B6V|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
pdb|3B6V|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
Length = 395
Score = 138 bits (348), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 87/196 (44%), Positives = 119/196 (60%), Gaps = 37/196 (18%)
Query: 287 SLVDLASEEIDSLMAEGNKSRTVAATNMNSESSRSHAVFSVVLTQTLVDTKSGVEGE--- 343
S V +EI+ +M GN++R V +T+MN SSRSHA+F + T+ ++ G +G+
Sbjct: 194 SFVTKNVKEIEHVMNLGNQTRAVGSTHMNEVSSRSHAIFII----TVECSERGSDGQDHI 249
Query: 344 KVARLSLVDLAGSERAVKTGA------------------------VGERLKEGSNINKSL 379
+V +L+LVDLAGSER K G GER KE S IN SL
Sbjct: 250 RVGKLNLVDLAGSERQNKAGPNTAGGAATPSSGGGGGGGGSGGGAGGERPKEASKINLSL 309
Query: 380 TTLGLVISKLADSTSSSKNKDKFVPYRDSVLTWLLKDNLGGNSKTVMVATVSPAADNYEE 439
+ LG VI+ LA N+ +PYRDS LT LL+D+LGGN+KT+MVAT+ PA+ +Y+E
Sbjct: 310 SALGNVIAALAG------NRSTHIPYRDSKLTRLLQDSLGGNAKTIMVATLGPASHSYDE 363
Query: 440 TLSTLRYADRAKRIVN 455
+LSTLR+A+RAK I N
Sbjct: 364 SLSTLRFANRAKNIKN 379
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 65/105 (61%), Gaps = 8/105 (7%)
Query: 194 QVHDLLDPKANKQSLKVREHNVLGPYVDGLSQLAVTSFQEIDSLMAEGNKSRTVAATNMN 253
++ DLL + K+ L+++E+ G Y+ LS + +EI+ +M GN++R V +T+MN
Sbjct: 164 EIRDLLSKEPGKR-LELKENPETGVYIKDLSSFVTKNVKEIEHVMNLGNQTRAVGSTHMN 222
Query: 254 SESSRSHAVFSVVLTQTLVDTKSGVEGE---KVARLSLVDLASEE 295
SSRSHA+F + T+ ++ G +G+ +V +L+LVDLA E
Sbjct: 223 EVSSRSHAIFII----TVECSERGSDGQDHIRVGKLNLVDLAGSE 263
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 32/49 (65%), Gaps = 7/49 (14%)
Query: 62 SNSTHAVFSVVLTQTLVDTKSGVEGE---KVARLSLVDLAGSERAVKTG 107
S+ +HA+F + T+ ++ G +G+ +V +L+LVDLAGSER K G
Sbjct: 225 SSRSHAIFII----TVECSERGSDGQDHIRVGKLNLVDLAGSERQNKAG 269
>pdb|2XT3|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 137 bits (345), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 78/162 (48%), Positives = 103/162 (63%), Gaps = 8/162 (4%)
Query: 294 EEIDSLMAEGNKSRTVAATNMNSESSRSHAVFSVVLTQ---TLVDTKSGVEGEK-VARLS 349
+E+ SL+ GN +R AT++N SSRSH VF+V L Q G+ V++
Sbjct: 187 DEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLKQRGRAPSRLPRPAPGQLLVSKFH 246
Query: 350 LVDLAGSERAVKTGAVGERLKEGSNINKSLTTLGLVISKLADSTSSSKNKDKFVPYRDSV 409
VDLAGSER +KTG+ GE KE IN SL LG VIS L D N +PYRDS
Sbjct: 247 FVDLAGSERVLKTGSTGELRKESIQINSSLLALGNVISALGDPQRRGSN----IPYRDSK 302
Query: 410 LTWLLKDNLGGNSKTVMVATVSPAADNYEETLSTLRYADRAK 451
+T +LKD+LGGN+KTVM+A VSP++ +++ETL+TL YA RA+
Sbjct: 303 ITRILKDSLGGNAKTVMIACVSPSSSDFDETLNTLNYASRAQ 344
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 53/97 (54%), Gaps = 1/97 (1%)
Query: 173 DKNDIQLSGNLKINFGLFFCFQVHDLLDPKANKQSLKVREHNVLGPYVDGLSQLAVTSFQ 232
D+ND+ L + +++ + + DLL+ + +++RE + G+ ++ V
Sbjct: 129 DENDL-LDCLVHVSYLEVYKEEFRDLLEVGTASRDIQLREDERGNVVLCGVKEVDVEGLD 187
Query: 233 EIDSLMAEGNKSRTVAATNMNSESSRSHAVFSVVLTQ 269
E+ SL+ GN +R AT++N SSRSH VF+V L Q
Sbjct: 188 EVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLKQ 224
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 42/79 (53%), Gaps = 6/79 (7%)
Query: 62 SNSTHAVFSVVLTQ---TLVDTKSGVEGEK-VARLSLVDLAGSERAVKTGAVGERLKEGS 117
S+ +H VF+V L Q G+ V++ VDLAGSER +KTG+ GE KE
Sbjct: 211 SSRSHTVFTVTLKQRGRAPSRLPRPAPGQLLVSKFHFVDLAGSERVLKTGSTGELRKESI 270
Query: 118 NINKQEALESMGISVQASG 136
IN +L ++G + A G
Sbjct: 271 QINS--SLLALGNVISALG 287
>pdb|1T5C|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
pdb|1T5C|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
Length = 349
Score = 135 bits (340), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 75/158 (47%), Positives = 102/158 (64%), Gaps = 8/158 (5%)
Query: 299 LMAEGNKSRTVAATNMNSESSRSHAVFSVVLTQTLVDTKSGVEGE-KVARLSLVDLAGSE 357
+ +G KSR T MN SSRSH +F ++L S EG KV+ L+LVDLAGSE
Sbjct: 180 WITKGEKSRHYGETKMNQRSSRSHTIFRMILESREKGEPSNCEGSVKVSHLNLVDLAGSE 239
Query: 358 RAVKTGAVGERLKEGSNINKSLTTLGLVISKLADSTSSSKNKDKFVPYRDSVLTWLLKDN 417
RA +TGA G RLKEG NIN+SL LG VI KL+D F+ YRDS LT +L+++
Sbjct: 240 RAAQTGAAGVRLKEGCNINRSLFILGQVIKKLSDGQVGG-----FINYRDSKLTRILQNS 294
Query: 418 LGGNSKTVMVATVSPAADNYEETLSTLRYADRAKRIVN 455
LGGN+KT ++ T++P + ++ETL+ L++A AK + N
Sbjct: 295 LGGNAKTRIICTITPVS--FDETLTALQFASTAKYMKN 330
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 75/164 (45%), Gaps = 43/164 (26%)
Query: 1 MGSQDNKGIIPRLCDSLFDLIAKQESSEL--------TYNP---------------YIRT 37
MGS+D+ G+IPR +F I K E YN IR
Sbjct: 96 MGSEDHLGVIPRAIHDIFQKIKKFPDREFLLRVSYMEIYNETITDLLCGTQKMKPLIIRE 155
Query: 38 PIRK--------YEMIYSCRVSMLKMIYGLKA-----------SNSTHAVFSVVLTQTLV 78
+ + E++Y+ +++ + G K+ S+ +H +F ++L
Sbjct: 156 DVNRNVYVADLTEEVVYTSEMALKWITKGEKSRHYGETKMNQRSSRSHTIFRMILESREK 215
Query: 79 DTKSGVEGE-KVARLSLVDLAGSERAVKTGAVGERLKEGSNINK 121
S EG KV+ L+LVDLAGSERA +TGA G RLKEG NIN+
Sbjct: 216 GEPSNCEGSVKVSHLNLVDLAGSERAAQTGAAGVRLKEGCNINR 259
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 56/114 (49%), Gaps = 1/114 (0%)
Query: 183 LKINFGLFFCFQVHDLLDPKANKQSLKVREHNVLGPYVDGLSQLAVTSFQEIDSLMAEGN 242
L++++ + + DLL + L +RE YV L++ V + + + +G
Sbjct: 126 LRVSYMEIYNETITDLLCGTQKMKPLIIREDVNRNVYVADLTEEVVYTSEMALKWITKGE 185
Query: 243 KSRTVAATNMNSESSRSHAVFSVVLTQTLVDTKSGVEGE-KVARLSLVDLASEE 295
KSR T MN SSRSH +F ++L S EG KV+ L+LVDLA E
Sbjct: 186 KSRHYGETKMNQRSSRSHTIFRMILESREKGEPSNCEGSVKVSHLNLVDLAGSE 239
>pdb|4ATX|C Chain C, Rigor Kinesin Motor Domain With An Ordered Neck-Linker,
Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em
Map Of Doublecortin-Microtubules Decorated With Kinesin
Length = 340
Score = 134 bits (337), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 77/171 (45%), Positives = 105/171 (61%), Gaps = 11/171 (6%)
Query: 291 LASEEIDSLMAEGNKSRTVAATNMNSESSRSHAVFSVVLTQTLVDTKSGVEGEKVARLSL 350
+ +E+ + EG +R VA TNMN SSRSH++F + + Q T+ + G +L L
Sbjct: 174 CSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQKLSG----KLYL 229
Query: 351 VDLAGSERAVKTGAVGERLKEGSNINKSLTTLGLVISKLADSTSSSKNKDKFVPYRDSVL 410
VDLAGSE+ KTGA G L E NINKSL+ LG VIS LA+ ++ +VPYRDS +
Sbjct: 230 VDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGST-------YVPYRDSKM 282
Query: 411 TWLLKDNLGGNSKTVMVATVSPAADNYEETLSTLRYADRAKRIVNHAVDNL 461
T +L+D+LGGN +T +V SP++ N ET STL + RAK I N N+
Sbjct: 283 TRILQDSLGGNCRTTIVICCSPSSYNESETKSTLLFGQRAKTIKNTVCVNV 333
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 47/129 (36%), Positives = 71/129 (55%), Gaps = 7/129 (5%)
Query: 176 DIQLSGNLKINFGLFFCFQVHDLLDPKANKQSLKVREHNVLGPYVDGLSQLAVTSFQEID 235
D L ++K+++ + ++ DLLD +K +L V E PYV G ++ V S E+
Sbjct: 123 DENLEFHIKVSYFEIYLDKIRDLLD--VSKTNLSVHEDKNRVPYVKGCTERFVCSPDEVM 180
Query: 236 SLMAEGNKSRTVAATNMNSESSRSHAVFSVVLTQTLVDTKSGVEGEKVARLSLVDLA-SE 294
+ EG +R VA TNMN SSRSH++F + + Q T+ + G +L LVDLA SE
Sbjct: 181 DTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQKLSG----KLYLVDLAGSE 236
Query: 295 EIDSLMAEG 303
++ AEG
Sbjct: 237 KVSKTGAEG 245
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 45/77 (58%), Gaps = 8/77 (10%)
Query: 62 SNSTHAVFSVVLTQTLVDTKSGVEGEKVARLSLVDLAGSERAVKTGAVGERLKEGSNINK 121
S+ +H++F + + Q T+ + G +L LVDLAGSE+ KTGA G L E NINK
Sbjct: 201 SSRSHSIFLINVKQENTQTEQKLSG----KLYLVDLAGSEKVSKTGAEGAVLDEAKNINK 256
Query: 122 QEALESMG--ISVQASG 136
+L ++G IS A G
Sbjct: 257 --SLSALGNVISALAEG 271
>pdb|1MKJ|A Chain A, Human Kinesin Motor Domain With Docked Neck Linker
Length = 349
Score = 134 bits (337), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 77/171 (45%), Positives = 105/171 (61%), Gaps = 11/171 (6%)
Query: 291 LASEEIDSLMAEGNKSRTVAATNMNSESSRSHAVFSVVLTQTLVDTKSGVEGEKVARLSL 350
+ +E+ + EG +R VA TNMN SSRSH++F + + Q T+ + G +L L
Sbjct: 174 CSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQKLSG----KLYL 229
Query: 351 VDLAGSERAVKTGAVGERLKEGSNINKSLTTLGLVISKLADSTSSSKNKDKFVPYRDSVL 410
VDLAGSE+ KTGA G L E NINKSL+ LG VIS LA+ ++ +VPYRDS +
Sbjct: 230 VDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGST-------YVPYRDSKM 282
Query: 411 TWLLKDNLGGNSKTVMVATVSPAADNYEETLSTLRYADRAKRIVNHAVDNL 461
T +L+D+LGGN +T +V SP++ N ET STL + RAK I N N+
Sbjct: 283 TRILQDSLGGNCRTTIVICCSPSSYNESETKSTLLFGQRAKTIKNTVCVNV 333
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 47/129 (36%), Positives = 71/129 (55%), Gaps = 7/129 (5%)
Query: 176 DIQLSGNLKINFGLFFCFQVHDLLDPKANKQSLKVREHNVLGPYVDGLSQLAVTSFQEID 235
D L ++K+++ + ++ DLLD +K +L V E PYV G ++ V S E+
Sbjct: 123 DENLEFHIKVSYFEIYLDKIRDLLD--VSKTNLSVHEDKNRVPYVKGCTERFVCSPDEVM 180
Query: 236 SLMAEGNKSRTVAATNMNSESSRSHAVFSVVLTQTLVDTKSGVEGEKVARLSLVDLA-SE 294
+ EG +R VA TNMN SSRSH++F + + Q T+ + G +L LVDLA SE
Sbjct: 181 DTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQKLSG----KLYLVDLAGSE 236
Query: 295 EIDSLMAEG 303
++ AEG
Sbjct: 237 KVSKTGAEG 245
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 45/77 (58%), Gaps = 8/77 (10%)
Query: 62 SNSTHAVFSVVLTQTLVDTKSGVEGEKVARLSLVDLAGSERAVKTGAVGERLKEGSNINK 121
S+ +H++F + + Q T+ + G +L LVDLAGSE+ KTGA G L E NINK
Sbjct: 201 SSRSHSIFLINVKQENTQTEQKLSG----KLYLVDLAGSEKVSKTGAEGAVLDEAKNINK 256
Query: 122 QEALESMG--ISVQASG 136
+L ++G IS A G
Sbjct: 257 --SLSALGNVISALAEG 271
>pdb|2WBE|C Chain C, Kinesin-5-Tubulin Complex With Amppnp
Length = 373
Score = 134 bits (336), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 79/168 (47%), Positives = 110/168 (65%), Gaps = 15/168 (8%)
Query: 292 ASEEIDSLMAEGNKSRTVAATNMNSESSRSHAVFSVVLTQTLVDTKSGVEGE---KVARL 348
+ +++ L+ +G + R A T MN++SSRSH VFS+V+ ++G+EGE K+ +L
Sbjct: 207 SKDDVYKLLEKGKERRKTATTLMNAQSSRSHTVFSIVVHIR----ENGIEGEDMLKIGKL 262
Query: 349 SLVDLAGSERAVKTG-AVGERLKEGSNINKSLTTLGLVISKLADSTSSSKNKDKFVPYRD 407
+LVDLAGSE K G G R++E NIN+SL TLG VI+ L D + VPYR+
Sbjct: 263 NLVDLAGSENVSKAGNEKGIRVRETVNINQSLLTLGRVITALVD-------RAPHVPYRE 315
Query: 408 SVLTWLLKDNLGGNSKTVMVATVSPAADNYEETLSTLRYADRAKRIVN 455
S LT LL+++LGG +KT ++AT+SP + EETLSTL YA RAK I N
Sbjct: 316 SKLTRLLQESLGGRTKTSIIATISPGHKDIEETLSTLEYAHRAKNIQN 363
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 50/79 (63%), Gaps = 7/79 (8%)
Query: 220 VDGLSQLAVTSFQEIDSLMAEGNKSRTVAATNMNSESSRSHAVFSVVLTQTLVDTKSGVE 279
+ GL ++ V S ++ L+ +G + R A T MN++SSRSH VFS+V+ ++G+E
Sbjct: 197 IQGLEEIPVHSKDDVYKLLEKGKERRKTATTLMNAQSSRSHTVFSIVVHI----RENGIE 252
Query: 280 GE---KVARLSLVDLASEE 295
GE K+ +L+LVDLA E
Sbjct: 253 GEDMLKIGKLNLVDLAGSE 271
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 41/64 (64%), Gaps = 8/64 (12%)
Query: 62 SNSTHAVFSVVLTQTLVDTKSGVEGE---KVARLSLVDLAGSERAVKTG-AVGERLKEGS 117
S+ +H VFS+V+ ++G+EGE K+ +L+LVDLAGSE K G G R++E
Sbjct: 233 SSRSHTVFSIVVHIR----ENGIEGEDMLKIGKLNLVDLAGSENVSKAGNEKGIRVRETV 288
Query: 118 NINK 121
NIN+
Sbjct: 289 NINQ 292
>pdb|1SDM|A Chain A, Crystal Structure Of Kinesin-Like Calmodulin Binding
Protein
pdb|3CNZ|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3CNZ|B Chain B, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|C Chain C, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
Length = 369
Score = 133 bits (335), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 81/189 (42%), Positives = 116/189 (61%), Gaps = 13/189 (6%)
Query: 273 DTKSGVEGEKVARLSLVDLASEEIDSLMAEGNKSRTVAATNMNSESSRSHAVFSVVLTQT 332
D+K V E V +S+ EE+ +++ G++ R T MN +SSRSH + SV++ T
Sbjct: 160 DSKGMVSVENVTVVSIS--TYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIEST 217
Query: 333 LVDTKSGVEGEKVARLSLVDLAGSERAVKTGAVGERLKEGSNINKSLTTLGLVISKLADS 392
+ T++ G +LS VDLAGSER K+G+ G +LKE +INKSL+ LG VIS L
Sbjct: 218 NLQTQAIARG----KLSFVDLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVISAL--- 270
Query: 393 TSSSKNKDKFVPYRDSVLTWLLKDNLGGNSKTVMVATVSPAADNYEETLSTLRYADRAKR 452
SS N+ +PYR+ LT L+ D+LGGN+KT+M +SPA N +ET ++L YA R +
Sbjct: 271 --SSGNQ--HIPYRNHKLTMLMSDSLGGNAKTLMFVNISPAESNLDETHNSLTYASRVRS 326
Query: 453 IVNHAVDNL 461
IVN N+
Sbjct: 327 IVNDPSKNV 335
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 69/119 (57%), Gaps = 6/119 (5%)
Query: 197 DLLDPK-ANKQSLKVREHNVLGPYVDGLSQLAVTSFQEIDSLMAEGNKSRTVAATNMNSE 255
DLL PK A + L +++ + V+ ++ +++++++E+ +++ G++ R T MN +
Sbjct: 143 DLLLPKQAKRLKLDIKKDSKGMVSVENVTVVSISTYEELKTIIQRGSEQRHTTGTLMNEQ 202
Query: 256 SSRSHAVFSVVLTQTLVDTKSGVEGEKVARLSLVDLA-SEEIDSLMAEGNKSRTVAATN 313
SSRSH + SV++ T + T++ G +LS VDLA SE + + GN+ + + N
Sbjct: 203 SSRSHLIVSVIIESTNLQTQAIARG----KLSFVDLAGSERVKKSGSAGNQLKEAQSIN 257
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 49/77 (63%), Gaps = 8/77 (10%)
Query: 62 SNSTHAVFSVVLTQTLVDTKSGVEGEKVARLSLVDLAGSERAVKTGAVGERLKEGSNINK 121
S+ +H + SV++ T + T++ G +LS VDLAGSER K+G+ G +LKE +INK
Sbjct: 203 SSRSHLIVSVIIESTNLQTQAIARG----KLSFVDLAGSERVKKSGSAGNQLKEAQSINK 258
Query: 122 QEALESMG--ISVQASG 136
+L ++G IS +SG
Sbjct: 259 --SLSALGDVISALSSG 273
>pdb|2Y5W|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y5W|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y65|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|C Chain C, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|D Chain D, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
Length = 365
Score = 133 bits (334), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 75/164 (45%), Positives = 104/164 (63%), Gaps = 10/164 (6%)
Query: 292 ASEEIDSLMAEGNKSRTVAATNMNSESSRSHAVFSVVLTQTLVDTKSGVEGEKVARLSLV 351
+ E++ ++ EG +R +A TNMN SSRSH+VF + + Q ++ + + G +L LV
Sbjct: 182 SPEDVFEVIEEGKSNRHIAVTNMNEHSSRSHSVFLINVKQENLENQKKLSG----KLYLV 237
Query: 352 DLAGSERAVKTGAVGERLKEGSNINKSLTTLGLVISKLADSTSSSKNKDKFVPYRDSVLT 411
DLAGSE+ KTGA G L E NINKSL+ LG VIS LAD + +PYRDS LT
Sbjct: 238 DLAGSEKVSKTGAEGTVLDEAKNINKSLSALGNVISALADGNKTH------IPYRDSKLT 291
Query: 412 WLLKDNLGGNSKTVMVATVSPAADNYEETLSTLRYADRAKRIVN 455
+L+++LGGN++T +V SPA+ N ET STL + RAK + N
Sbjct: 292 RILQESLGGNARTTIVICCSPASFNESETKSTLDFGRRAKTVKN 335
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 76/129 (58%), Gaps = 7/129 (5%)
Query: 176 DIQLSGNLKINFGLFFCFQVHDLLDPKANKQSLKVREHNVLGPYVDGLSQLAVTSFQEID 235
++ L ++K+++ + ++ DLLD +K +L V E PYV G ++ V+S +++
Sbjct: 130 EVNLEFHIKVSYYEIYMDKIRDLLD--VSKVNLSVHEDKNRVPYVKGATERFVSSPEDVF 187
Query: 236 SLMAEGNKSRTVAATNMNSESSRSHAVFSVVLTQTLVDTKSGVEGEKVARLSLVDLA-SE 294
++ EG +R +A TNMN SSRSH+VF + + Q ++ + + G +L LVDLA SE
Sbjct: 188 EVIEEGKSNRHIAVTNMNEHSSRSHSVFLINVKQENLENQKKLSG----KLYLVDLAGSE 243
Query: 295 EIDSLMAEG 303
++ AEG
Sbjct: 244 KVSKTGAEG 252
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 47/79 (59%), Gaps = 8/79 (10%)
Query: 62 SNSTHAVFSVVLTQTLVDTKSGVEGEKVARLSLVDLAGSERAVKTGAVGERLKEGSNINK 121
S+ +H+VF + + Q ++ + + G +L LVDLAGSE+ KTGA G L E NINK
Sbjct: 208 SSRSHSVFLINVKQENLENQKKLSG----KLYLVDLAGSEKVSKTGAEGTVLDEAKNINK 263
Query: 122 QEALESMG--ISVQASGIK 138
+L ++G IS A G K
Sbjct: 264 --SLSALGNVISALADGNK 280
>pdb|1BG2|A Chain A, Human Ubiquitous Kinesin Motor Domain
pdb|2P4N|K Chain K, Human Monomeric Kinesin (1bg2) And Bovine Tubulin (1jff)
Docked Into The 9-Angstrom Cryo-Em Map Of
Nucleotide-Free Kinesin Complexed To The Microtubule
Length = 325
Score = 133 bits (334), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 75/163 (46%), Positives = 102/163 (62%), Gaps = 11/163 (6%)
Query: 291 LASEEIDSLMAEGNKSRTVAATNMNSESSRSHAVFSVVLTQTLVDTKSGVEGEKVARLSL 350
+ +E+ + EG +R VA TNMN SSRSH++F + + Q T+ + G +L L
Sbjct: 174 CSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQKLSG----KLYL 229
Query: 351 VDLAGSERAVKTGAVGERLKEGSNINKSLTTLGLVISKLADSTSSSKNKDKFVPYRDSVL 410
VDLAGSE+ KTGA G L E NINKSL+ LG VIS LA+ ++ +VPYRDS +
Sbjct: 230 VDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGST-------YVPYRDSKM 282
Query: 411 TWLLKDNLGGNSKTVMVATVSPAADNYEETLSTLRYADRAKRI 453
T +L+D+LGGN +T +V SP++ N ET STL + RAK I
Sbjct: 283 TRILQDSLGGNCRTTIVICCSPSSYNESETKSTLLFGQRAKTI 325
Score = 69.3 bits (168), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 47/129 (36%), Positives = 71/129 (55%), Gaps = 7/129 (5%)
Query: 176 DIQLSGNLKINFGLFFCFQVHDLLDPKANKQSLKVREHNVLGPYVDGLSQLAVTSFQEID 235
D L ++K+++ + ++ DLLD +K +L V E PYV G ++ V S E+
Sbjct: 123 DENLEFHIKVSYFEIYLDKIRDLLD--VSKTNLSVHEDKNRVPYVKGCTERFVCSPDEVM 180
Query: 236 SLMAEGNKSRTVAATNMNSESSRSHAVFSVVLTQTLVDTKSGVEGEKVARLSLVDLA-SE 294
+ EG +R VA TNMN SSRSH++F + + Q T+ + G +L LVDLA SE
Sbjct: 181 DTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQKLSG----KLYLVDLAGSE 236
Query: 295 EIDSLMAEG 303
++ AEG
Sbjct: 237 KVSKTGAEG 245
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 45/77 (58%), Gaps = 8/77 (10%)
Query: 62 SNSTHAVFSVVLTQTLVDTKSGVEGEKVARLSLVDLAGSERAVKTGAVGERLKEGSNINK 121
S+ +H++F + + Q T+ + G +L LVDLAGSE+ KTGA G L E NINK
Sbjct: 201 SSRSHSIFLINVKQENTQTEQKLSG----KLYLVDLAGSEKVSKTGAEGAVLDEAKNINK 256
Query: 122 QEALESMG--ISVQASG 136
+L ++G IS A G
Sbjct: 257 --SLSALGNVISALAEG 271
>pdb|2H58|A Chain A, Crystal Structure Of The Kifc3 Motor Domain In Complex
With Adp
Length = 330
Score = 126 bits (316), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 70/160 (43%), Positives = 106/160 (66%), Gaps = 11/160 (6%)
Query: 294 EEIDSLMAEGNKSRTVAATNMNSESSRSHAVFSVVLTQTLVDTKSGVEGEKVARLSLVDL 353
++I+ + G+ +RT TN+N SSRSHA+ +++T VD +G+ +L+LVDL
Sbjct: 180 DDINKVFEFGHTNRTTEFTNLNEHSSRSHAL--LIVTVRGVDCSTGLR--TTGKLNLVDL 235
Query: 354 AGSERAVKTGAVGERLKEGSNINKSLTTLGLVISKLADSTSSSKNKDKFVPYRDSVLTWL 413
AGSER K+GA G RL+E +INKSL+ LG VI+ L +++ VP+R+S LT+L
Sbjct: 236 AGSERVGKSGAEGSRLREAQHINKSLSALGDVIAAL-------RSRQGHVPFRNSKLTYL 288
Query: 414 LKDNLGGNSKTVMVATVSPAADNYEETLSTLRYADRAKRI 453
L+D+L G+SKT+MV VSP N ETL +L++A+R + +
Sbjct: 289 LQDSLSGDSKTLMVVQVSPVEKNTSETLYSLKFAERVRSV 328
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 55/96 (57%), Gaps = 5/96 (5%)
Query: 219 YVDGLSQLAVTSFQEIDSLMAEGNKSRTVAATNMNSESSRSHAVFSVVLTQTLVDTKSGV 278
YV GL++ V S +I+ + G+ +RT TN+N SSRSHA+ +++T VD +G+
Sbjct: 167 YVPGLTEFQVQSVDDINKVFEFGHTNRTTEFTNLNEHSSRSHAL--LIVTVRGVDCSTGL 224
Query: 279 EGEKVARLSLVDLA-SEEIDSLMAEGNKSRTVAATN 313
+L+LVDLA SE + AEG++ R N
Sbjct: 225 --RTTGKLNLVDLAGSERVGKSGAEGSRLREAQHIN 258
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 47/73 (64%), Gaps = 6/73 (8%)
Query: 62 SNSTHAVFSVVLTQTLVDTKSGVEGEKVARLSLVDLAGSERAVKTGAVGERLKEGSNINK 121
S+ +HA+ +++T VD +G+ +L+LVDLAGSER K+GA G RL+E +INK
Sbjct: 204 SSRSHAL--LIVTVRGVDCSTGLR--TTGKLNLVDLAGSERVGKSGAEGSRLREAQHINK 259
Query: 122 QEALESMGISVQA 134
+L ++G + A
Sbjct: 260 --SLSALGDVIAA 270
>pdb|3T0Q|A Chain A, Motor Domain Structure Of The Kar3-Like Kinesin From
Ashbya Gossypii
Length = 349
Score = 116 bits (291), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 68/175 (38%), Positives = 109/175 (62%), Gaps = 10/175 (5%)
Query: 275 KSGVEGEKVARLSLVDLASEEIDSLMAEGNKSRTVAATNMNSESSRSHAVFSVVLTQTLV 334
K G V R+ + ++ ++D+++ + +K R+ AAT N SSRSH+VF V + +
Sbjct: 176 KQGTYITNVTRMKMT--STSQVDTILKKASKMRSTAATRSNERSSRSHSVFMVHINGRNL 233
Query: 335 DTKSGVEGEKVARLSLVDLAGSERAVKTGAVGERLKEGSNINKSLTTLGLVISKLADSTS 394
T +G +L+LVDLAGSER + GERL+E NINKSL+ LG VI L ++
Sbjct: 234 HTGETSQG----KLNLVDLAGSERINSSAVTGERLRETQNINKSLSCLGDVIYAL-NTPD 288
Query: 395 SSKNKDKFVPYRDSVLTWLLKDNLGGNSKTVMVATVSPAADNYEETLSTLRYADR 449
+ K +++P+R+S LT+LL+ +L G+SKT+M + P ++ ETL++LR+A +
Sbjct: 289 AGK---RYIPFRNSKLTYLLQYSLVGDSKTLMFVNIPPDPNHISETLNSLRFASK 340
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 68/123 (55%), Gaps = 6/123 (4%)
Query: 193 FQVHDLLDPKANKQSLKVR-EHNVLGPYVDGLSQLAVTSFQEIDSLMAEGNKSRTVAATN 251
F+ HD +D + Q +R +H G Y+ ++++ +TS ++D+++ + +K R+ AAT
Sbjct: 153 FKSHDNIDEILDSQKHDIRHDHEKQGTYITNVTRMKMTSTSQVDTILKKASKMRSTAATR 212
Query: 252 MNSESSRSHAVFSVVLTQTLVDTKSGVEGEKVARLSLVDLA-SEEIDSLMAEGNKSRTVA 310
N SSRSH+VF V + + T +G +L+LVDLA SE I+S G + R
Sbjct: 213 SNERSSRSHSVFMVHINGRNLHTGETSQG----KLNLVDLAGSERINSSAVTGERLRETQ 268
Query: 311 ATN 313
N
Sbjct: 269 NIN 271
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 55/111 (49%), Gaps = 14/111 (12%)
Query: 62 SNSTHAVFSVVLTQTLVDTKSGVEGEKVARLSLVDLAGSERAVKTGAVGERLKEGSNINK 121
S+ +H+VF V + + T +G +L+LVDLAGSER + GERL+E NINK
Sbjct: 217 SSRSHSVFMVHINGRNLHTGETSQG----KLNLVDLAGSERINSSAVTGERLRETQNINK 272
Query: 122 QEALESMGISVQASGIKVEKNKYYLVNLNADPSLNELLVYYLKDCTLIGSS 172
+L +G + A +Y P N L Y L+ +L+G S
Sbjct: 273 --SLSCLGDVIYALNTPDAGKRYI-------PFRNSKLTYLLQ-YSLVGDS 313
>pdb|4ETP|A Chain A, C-Terminal Motor And Motor Homology Domain Of Kar3vik1
Fused To A Synthetic Heterodimeric Coiled Coil
Length = 403
Score = 116 bits (290), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 68/162 (41%), Positives = 106/162 (65%), Gaps = 9/162 (5%)
Query: 289 VDLASEE-IDSLMAEGNKSRTVAATNMNSESSRSHAVFSVVLTQTLVDTKSGVEGEKVAR 347
V L SEE ++ ++ + NK R+ A+T N SSRSH++F + L+ + + K+G
Sbjct: 240 VKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGS--NAKTGAHS--YGT 295
Query: 348 LSLVDLAGSERAVKTGAVGERLKEGSNINKSLTTLGLVISKLADSTSSSKNKDKFVPYRD 407
L+LVDLAGSER + VG+RL+E NINKSL+ LG VI L S+ ++ +P+R+
Sbjct: 296 LNLVDLAGSERINVSQVVGDRLRETQNINKSLSALGDVIHALGQPDSTKRH----IPFRN 351
Query: 408 SVLTWLLKDNLGGNSKTVMVATVSPAADNYEETLSTLRYADR 449
S LT+LL+ +L G+SKT+M +SP++ + ETL++LR+A +
Sbjct: 352 SKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASK 393
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 61/111 (54%), Gaps = 14/111 (12%)
Query: 62 SNSTHAVFSVVLTQTLVDTKSGVEGEKVARLSLVDLAGSERAVKTGAVGERLKEGSNINK 121
S+ +H++F + L+ + + K+G L+LVDLAGSER + VG+RL+E NINK
Sbjct: 270 SSRSHSIFIIHLSGS--NAKTGAHS--YGTLNLVDLAGSERINVSQVVGDRLRETQNINK 325
Query: 122 QEALESMGISVQASGIKVEKNKYYLVNLNADPSLNELLVYYLKDCTLIGSS 172
+L ++G + A G + + K ++ P N L Y L+ +L G S
Sbjct: 326 --SLSALGDVIHALG-QPDSTKRHI------PFRNSKLTYLLQ-YSLTGDS 366
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 45/81 (55%), Gaps = 5/81 (6%)
Query: 234 IDSLMAEGNKSRTVAATNMNSESSRSHAVFSVVLTQTLVDTKSGVEGEKVARLSLVDLA- 292
++ ++ + NK R+ A+T N SSRSH++F + L+ + + K+G L+LVDLA
Sbjct: 248 VEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGS--NAKTGAHS--YGTLNLVDLAG 303
Query: 293 SEEIDSLMAEGNKSRTVAATN 313
SE I+ G++ R N
Sbjct: 304 SERINVSQVVGDRLRETQNIN 324
>pdb|4H1G|A Chain A, Structure Of Candida Albicans Kar3 Motor Domain Fused To
Maltose- Binding Protein
Length = 715
Score = 115 bits (289), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 73/168 (43%), Positives = 101/168 (60%), Gaps = 11/168 (6%)
Query: 283 VARLSLVDLAS-EEIDSLMAEGNKSRTVAATNMNSESSRSHAVFSVVLTQTLVDTKSGVE 341
V +S +D+ S E+ +++ + NK R+ AAT N SSRSH++F + L TK
Sbjct: 550 VTNVSTIDIKSPEQAITILNQANKKRSTAATKSNDHSSRSHSIFIIDLQGYNSLTKESSY 609
Query: 342 GEKVARLSLVDLAGSERAVKTGAVGERLKEGSNINKSLTTLGLVISKLADSTSSSKNKDK 401
G L+L+DLAGSER + A G+RLKE INKSL+ LG VI L S
Sbjct: 610 G----TLNLIDLAGSERLNNSRAEGDRLKETQAINKSLSCLGDVIHSLNLKDGSH----- 660
Query: 402 FVPYRDSVLTWLLKDNLGGNSKTVMVATVSPAADNYEETLSTLRYADR 449
VPYR+S LT+LLK +LGGNSKT+M +SP + ET+++LR+A +
Sbjct: 661 -VPYRNSKLTYLLKHSLGGNSKTLMFVNISPLTKDLNETINSLRFATK 707
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 67/120 (55%), Gaps = 7/120 (5%)
Query: 197 DLLDPKANKQS-LKVREHNVLGPY-VDGLSQLAVTSFQEIDSLMAEGNKSRTVAATNMNS 254
DLL+PK + + +++ ++ G V +S + + S ++ +++ + NK R+ AAT N
Sbjct: 525 DLLNPKIDPNTKYEIKHDDIAGKTTVTNVSTIDIKSPEQAITILNQANKKRSTAATKSND 584
Query: 255 ESSRSHAVFSVVLTQTLVDTKSGVEGEKVARLSLVDLA-SEEIDSLMAEGNKSRTVAATN 313
SSRSH++F + L TK G L+L+DLA SE +++ AEG++ + A N
Sbjct: 585 HSSRSHSIFIIDLQGYNSLTKESSYG----TLNLIDLAGSERLNNSRAEGDRLKETQAIN 640
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 6/77 (7%)
Query: 62 SNSTHAVFSVVLTQTLVDTKSGVEGEKVARLSLVDLAGSERAVKTGAVGERLKEGSNINK 121
S+ +H++F + L TK G L+L+DLAGSER + A G+RLKE INK
Sbjct: 586 SSRSHSIFIIDLQGYNSLTKESSYG----TLNLIDLAGSERLNNSRAEGDRLKETQAINK 641
Query: 122 QEALESMGISVQASGIK 138
+L +G + + +K
Sbjct: 642 --SLSCLGDVIHSLNLK 656
>pdb|3KAR|A Chain A, The Motor Domain Of Kinesin-Like Protein Kar3, A
Saccharomyces Cerevisiae Kinesin-Related Protein
Length = 346
Score = 115 bits (287), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 67/160 (41%), Positives = 105/160 (65%), Gaps = 9/160 (5%)
Query: 291 LASEE-IDSLMAEGNKSRTVAATNMNSESSRSHAVFSVVLTQTLVDTKSGVEGEKVARLS 349
L SEE ++ ++ + NK R+ A+T N SSRSH++F + L+ + + K+G L+
Sbjct: 185 LESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGS--NAKTG--AHSYGTLN 240
Query: 350 LVDLAGSERAVKTGAVGERLKEGSNINKSLTTLGLVISKLADSTSSSKNKDKFVPYRDSV 409
LVDLAGSER + VG+RL+E NINKSL+ LG VI L S+ ++ +P+R+S
Sbjct: 241 LVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRH----IPFRNSK 296
Query: 410 LTWLLKDNLGGNSKTVMVATVSPAADNYEETLSTLRYADR 449
LT+LL+ +L G+SKT+M +SP++ + ETL++LR+A +
Sbjct: 297 LTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASK 336
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 13/103 (12%)
Query: 62 SNSTHAVFSVVLTQTLVDTKSGVEGEKVARLSLVDLAGSERAVKTGAVGERLKEGSNINK 121
S+ +H++F + L+ + + K+G L+LVDLAGSER + VG+RL+E NINK
Sbjct: 213 SSRSHSIFIIHLSGS--NAKTG--AHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINK 268
Query: 122 QEALESMGISVQASGIKVEKNKYYLVNLNADPSLNELLVYYLK 164
+L +G + A G + + K ++ P N L Y L+
Sbjct: 269 --SLSCLGDVIHALG-QPDSTKRHI------PFRNSKLTYLLQ 302
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 45/81 (55%), Gaps = 5/81 (6%)
Query: 234 IDSLMAEGNKSRTVAATNMNSESSRSHAVFSVVLTQTLVDTKSGVEGEKVARLSLVDLA- 292
++ ++ + NK R+ A+T N SSRSH++F + L+ + + K+G L+LVDLA
Sbjct: 191 VEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGS--NAKTG--AHSYGTLNLVDLAG 246
Query: 293 SEEIDSLMAEGNKSRTVAATN 313
SE I+ G++ R N
Sbjct: 247 SERINVSQVVGDRLRETQNIN 267
>pdb|1F9T|A Chain A, Crystal Structures Of Kinesin Mutants Reveal A Signalling
Pathway For Activation Of The Motor Atpase
Length = 358
Score = 115 bits (287), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 67/160 (41%), Positives = 105/160 (65%), Gaps = 9/160 (5%)
Query: 291 LASEE-IDSLMAEGNKSRTVAATNMNSESSRSHAVFSVVLTQTLVDTKSGVEGEKVARLS 349
L SEE ++ ++ + NK R+ A+T N SSRSH++F + L+ + + K+G L+
Sbjct: 197 LESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGS--NAKTG--AHSYGTLN 252
Query: 350 LVDLAGSERAVKTGAVGERLKEGSNINKSLTTLGLVISKLADSTSSSKNKDKFVPYRDSV 409
LVDLAGSER + VG+RL+E NINKSL+ LG VI L S+ ++ +P+R+S
Sbjct: 253 LVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRH----IPFRNSK 308
Query: 410 LTWLLKDNLGGNSKTVMVATVSPAADNYEETLSTLRYADR 449
LT+LL+ +L G+SKT+M +SP++ + ETL++LR+A +
Sbjct: 309 LTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASK 348
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 13/103 (12%)
Query: 62 SNSTHAVFSVVLTQTLVDTKSGVEGEKVARLSLVDLAGSERAVKTGAVGERLKEGSNINK 121
S+ +H++F + L+ + + K+G L+LVDLAGSER + VG+RL+E NINK
Sbjct: 225 SSRSHSIFIIHLSGS--NAKTG--AHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINK 280
Query: 122 QEALESMGISVQASGIKVEKNKYYLVNLNADPSLNELLVYYLK 164
+L +G + A G + + K ++ P N L Y L+
Sbjct: 281 --SLSCLGDVIHALG-QPDSTKRHI------PFRNSKLTYLLQ 314
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 45/81 (55%), Gaps = 5/81 (6%)
Query: 234 IDSLMAEGNKSRTVAATNMNSESSRSHAVFSVVLTQTLVDTKSGVEGEKVARLSLVDLA- 292
++ ++ + NK R+ A+T N SSRSH++F + L+ + + K+G L+LVDLA
Sbjct: 203 VEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGS--NAKTG--AHSYGTLNLVDLAG 258
Query: 293 SEEIDSLMAEGNKSRTVAATN 313
SE I+ G++ R N
Sbjct: 259 SERINVSQVVGDRLRETQNIN 279
>pdb|3NWN|A Chain A, Crystal Structure Of The Human Kif9 Motor Domain In
Complex With Adp
Length = 359
Score = 114 bits (285), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 79/193 (40%), Positives = 110/193 (56%), Gaps = 20/193 (10%)
Query: 266 VLTQTLVDTKSGVEGEKVARLSLVDLASEEID--SLMAEGNKSRTVAATNMNSESSRSHA 323
V T+V+ GV + LS V L S+E D SL+ EG +R +A+ MN SSRSH
Sbjct: 182 VTPMTIVENPQGV---FIKGLS-VHLTSQEEDAFSLLFEGETNRIIASHTMNKNSSRSHC 237
Query: 324 VFSVVL---TQTLVDTKSGVEGEKVARLSLVDLAGSERAVKTGAVGERLKEGSNINKSLT 380
+F++ L ++TL + K ++++LVDLAGSER K+G+ G+ LKE + INKSL+
Sbjct: 238 IFTIYLEAHSRTLSEEKY-----ITSKINLVDLAGSERLGKSGSEGQVLKEATYINKSLS 292
Query: 381 TLGLVISKLADSTSSSKNKDKFVPYRDSVLTWLLKDNLGGNSKTVMVATVSPAADNYEET 440
L I L D K +P+R LT LKD+LGGN V+V + A EET
Sbjct: 293 FLEQAIIALGD------QKRDHIPFRQCKLTHALKDSLGGNCNMVLVTNIYGEAAQLEET 346
Query: 441 LSTLRYADRAKRI 453
LS+LR+A R K +
Sbjct: 347 LSSLRFASRMKLV 359
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 48/85 (56%), Gaps = 8/85 (9%)
Query: 214 NVLGPYVDGLSQLAVTSFQEIDSLMAEGNKSRTVAATNMNSESSRSHAVFSVVL---TQT 270
N G ++ GLS + ++ SL+ EG +R +A+ MN SSRSH +F++ L ++T
Sbjct: 190 NPQGVFIKGLSVHLTSQEEDAFSLLFEGETNRIIASHTMNKNSSRSHCIFTIYLEAHSRT 249
Query: 271 LVDTKSGVEGEKVARLSLVDLASEE 295
L + K ++++LVDLA E
Sbjct: 250 LSEEKY-----ITSKINLVDLAGSE 269
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 42/65 (64%), Gaps = 8/65 (12%)
Query: 60 KASNSTHAVFSVVL---TQTLVDTKSGVEGEKVARLSLVDLAGSERAVKTGAVGERLKEG 116
K S+ +H +F++ L ++TL + K ++++LVDLAGSER K+G+ G+ LKE
Sbjct: 230 KNSSRSHCIFTIYLEAHSRTLSEEKY-----ITSKINLVDLAGSERLGKSGSEGQVLKEA 284
Query: 117 SNINK 121
+ INK
Sbjct: 285 TYINK 289
>pdb|2REP|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member C1
Length = 376
Score = 112 bits (281), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 70/161 (43%), Positives = 100/161 (62%), Gaps = 17/161 (10%)
Query: 294 EEIDSLMAEGNKSRTVAATNMNSESSRSHAVFSVVLTQTLVDTKSGVEGEKV-ARLSLVD 352
+E+D+L+ ++R VA T N SSRSH+VF Q + + G + A LSLVD
Sbjct: 224 KEVDALLHLARQNRAVARTAQNERSSRSHSVF-----QLQISGEHSSRGLQCGAPLSLVD 278
Query: 353 LAGSERAVKTGAVG----ERLKEGSNINKSLTTLGLVISKLADSTSSSKNKDKFVPYRDS 408
LAGSER A+G ERL+E IN SL+TLGLVI L+ NK+ VPYR+S
Sbjct: 279 LAGSERLDPGLALGPGERERLRETQAINSSLSTLGLVIMALS-------NKESHVPYRNS 331
Query: 409 VLTWLLKDNLGGNSKTVMVATVSPAADNYEETLSTLRYADR 449
LT+LL+++LGG++K +M +SP +N E+L++LR+A +
Sbjct: 332 KLTYLLQNSLGGSAKMLMFVNISPLEENVSESLNSLRFASK 372
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 42/78 (53%), Gaps = 12/78 (15%)
Query: 62 SNSTHAVFSVVLTQTLVDTKSGVEGEKV-ARLSLVDLAGSERAVKTGAVG----ERLKEG 116
S+ +H+VF Q + + G + A LSLVDLAGSER A+G ERL+E
Sbjct: 248 SSRSHSVF-----QLQISGEHSSRGLQCGAPLSLVDLAGSERLDPGLALGPGERERLRET 302
Query: 117 SNINKQEALESMGISVQA 134
IN +L ++G+ + A
Sbjct: 303 QAINS--SLSTLGLVIMA 318
>pdb|1F9U|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 112 bits (280), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 66/160 (41%), Positives = 104/160 (65%), Gaps = 9/160 (5%)
Query: 291 LASEE-IDSLMAEGNKSRTVAATNMNSESSRSHAVFSVVLTQTLVDTKSGVEGEKVARLS 349
L SEE ++ ++ + NK R+ A+T N SSRSH++F + L+ + + K+G L+
Sbjct: 186 LESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGS--NAKTG--AHSYGTLN 241
Query: 350 LVDLAGSERAVKTGAVGERLKEGSNINKSLTTLGLVISKLADSTSSSKNKDKFVPYRDSV 409
LVDLAGSER + VG+RL+E NI KSL+ LG VI L S+ ++ +P+R+S
Sbjct: 242 LVDLAGSERINVSQVVGDRLRETQNIKKSLSCLGDVIHALGQPDSTKRH----IPFRNSK 297
Query: 410 LTWLLKDNLGGNSKTVMVATVSPAADNYEETLSTLRYADR 449
LT+LL+ +L G+SKT+M +SP++ + ETL++LR+A +
Sbjct: 298 LTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASK 337
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 55/103 (53%), Gaps = 13/103 (12%)
Query: 62 SNSTHAVFSVVLTQTLVDTKSGVEGEKVARLSLVDLAGSERAVKTGAVGERLKEGSNINK 121
S+ +H++F + L+ + + K+G L+LVDLAGSER + VG+RL+E NI K
Sbjct: 214 SSRSHSIFIIHLSGS--NAKTG--AHSYGTLNLVDLAGSERINVSQVVGDRLRETQNIKK 269
Query: 122 QEALESMGISVQASGIKVEKNKYYLVNLNADPSLNELLVYYLK 164
+L +G + A G + + K ++ P N L Y L+
Sbjct: 270 --SLSCLGDVIHALG-QPDSTKRHI------PFRNSKLTYLLQ 303
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 44/75 (58%), Gaps = 5/75 (6%)
Query: 234 IDSLMAEGNKSRTVAATNMNSESSRSHAVFSVVLTQTLVDTKSGVEGEKVARLSLVDLA- 292
++ ++ + NK R+ A+T N SSRSH++F + L+ + + K+G L+LVDLA
Sbjct: 192 VEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGS--NAKTG--AHSYGTLNLVDLAG 247
Query: 293 SEEIDSLMAEGNKSR 307
SE I+ G++ R
Sbjct: 248 SERINVSQVVGDRLR 262
>pdb|1F9W|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
pdb|1F9W|B Chain B, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 112 bits (280), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 66/160 (41%), Positives = 104/160 (65%), Gaps = 9/160 (5%)
Query: 291 LASEE-IDSLMAEGNKSRTVAATNMNSESSRSHAVFSVVLTQTLVDTKSGVEGEKVARLS 349
L SEE ++ ++ + NK R+ A+T N SSRSH++F + L+ + + K+G L+
Sbjct: 186 LESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGS--NAKTG--AHSYGTLN 241
Query: 350 LVDLAGSERAVKTGAVGERLKEGSNINKSLTTLGLVISKLADSTSSSKNKDKFVPYRDSV 409
LVDLAGS R + VG+RL+E NINKSL+ LG VI L S+ ++ +P+R+S
Sbjct: 242 LVDLAGSARINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRH----IPFRNSK 297
Query: 410 LTWLLKDNLGGNSKTVMVATVSPAADNYEETLSTLRYADR 449
LT+LL+ +L G+SKT+M +SP++ + ETL++LR+A +
Sbjct: 298 LTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASK 337
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 55/103 (53%), Gaps = 13/103 (12%)
Query: 62 SNSTHAVFSVVLTQTLVDTKSGVEGEKVARLSLVDLAGSERAVKTGAVGERLKEGSNINK 121
S+ +H++F + L+ + + K+G L+LVDLAGS R + VG+RL+E NINK
Sbjct: 214 SSRSHSIFIIHLSGS--NAKTG--AHSYGTLNLVDLAGSARINVSQVVGDRLRETQNINK 269
Query: 122 QEALESMGISVQASGIKVEKNKYYLVNLNADPSLNELLVYYLK 164
+L +G + A G + + K ++ P N L Y L+
Sbjct: 270 --SLSCLGDVIHALG-QPDSTKRHI------PFRNSKLTYLLQ 303
Score = 35.8 bits (81), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 4/59 (6%)
Query: 234 IDSLMAEGNKSRTVAATNMNSESSRSHAVFSVVLTQTLVDTKSGVEGEKVARLSLVDLA 292
++ ++ + NK R+ A+T N SSRSH++F + L+ + + K+G L+LVDLA
Sbjct: 192 VEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGS--NAKTG--AHSYGTLNLVDLA 246
>pdb|1F9V|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 112 bits (279), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 66/160 (41%), Positives = 104/160 (65%), Gaps = 9/160 (5%)
Query: 291 LASEE-IDSLMAEGNKSRTVAATNMNSESSRSHAVFSVVLTQTLVDTKSGVEGEKVARLS 349
L SEE ++ ++ + NK R+ A+T N SS SH++F + L+ + + K+G L+
Sbjct: 186 LESEEMVEIILKKANKLRSTASTASNEHSSASHSIFIIHLSGS--NAKTG--AHSYGTLN 241
Query: 350 LVDLAGSERAVKTGAVGERLKEGSNINKSLTTLGLVISKLADSTSSSKNKDKFVPYRDSV 409
LVDLAGSER + VG+RL+E NINKSL+ LG VI L S+ ++ +P+R+S
Sbjct: 242 LVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRH----IPFRNSK 297
Query: 410 LTWLLKDNLGGNSKTVMVATVSPAADNYEETLSTLRYADR 449
LT+LL+ +L G+SKT+M +SP++ + ETL++LR+A +
Sbjct: 298 LTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASK 337
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 57/103 (55%), Gaps = 13/103 (12%)
Query: 62 SNSTHAVFSVVLTQTLVDTKSGVEGEKVARLSLVDLAGSERAVKTGAVGERLKEGSNINK 121
S+++H++F + L+ + + K+G L+LVDLAGSER + VG+RL+E NINK
Sbjct: 214 SSASHSIFIIHLSGS--NAKTG--AHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINK 269
Query: 122 QEALESMGISVQASGIKVEKNKYYLVNLNADPSLNELLVYYLK 164
+L +G + A G + + K ++ P N L Y L+
Sbjct: 270 --SLSCLGDVIHALG-QPDSTKRHI------PFRNSKLTYLLQ 303
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 5/81 (6%)
Query: 234 IDSLMAEGNKSRTVAATNMNSESSRSHAVFSVVLTQTLVDTKSGVEGEKVARLSLVDLA- 292
++ ++ + NK R+ A+T N SS SH++F + L+ + + K+G L+LVDLA
Sbjct: 192 VEIILKKANKLRSTASTASNEHSSASHSIFIIHLSGS--NAKTG--AHSYGTLNLVDLAG 247
Query: 293 SEEIDSLMAEGNKSRTVAATN 313
SE I+ G++ R N
Sbjct: 248 SERINVSQVVGDRLRETQNIN 268
>pdb|4GKR|A Chain A, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
pdb|4GKR|B Chain B, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
Length = 371
Score = 112 bits (279), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 67/155 (43%), Positives = 100/155 (64%), Gaps = 10/155 (6%)
Query: 296 IDSLMAEGNKSRTVAATNMNSESSRSHAVFSVVLTQTLVDTKSGVEGEKV-ARLSLVDLA 354
+D ++ NK R+ A+T N SSRSH++F + L + K+ GEK L+LVDLA
Sbjct: 216 VDKVLKRANKLRSTASTAANEHSSRSHSIFIIHL-----EGKNEGTGEKSQGILNLVDLA 270
Query: 355 GSERAVKTGAVGERLKEGSNINKSLTTLGLVISKLADSTSSSKNKDKFVPYRDSVLTWLL 414
GSER + VGERL+E +INKSL+ LG VI L +S + + +P+R+S LT+LL
Sbjct: 271 GSERLNSSMVVGERLRETQSINKSLSCLGDVIHAL----NSPDGQKRHIPFRNSKLTYLL 326
Query: 415 KDNLGGNSKTVMVATVSPAADNYEETLSTLRYADR 449
+ +L G+SKT+M +SPAA + ET+++LR+A +
Sbjct: 327 QYSLIGSSKTLMFVNISPAALHLNETINSLRFASK 361
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 52/97 (53%), Gaps = 7/97 (7%)
Query: 219 YVDGLSQLAVTSFQEIDSLMAEGNKSRTVAATNMNSESSRSHAVFSVVLTQTLVDTKSGV 278
Y+ ++ + S +D ++ NK R+ A+T N SSRSH++F + L + K+
Sbjct: 201 YITNITTCVLDSRDTVDKVLKRANKLRSTASTAANEHSSRSHSIFIIHL-----EGKNEG 255
Query: 279 EGEKV-ARLSLVDLA-SEEIDSLMAEGNKSRTVAATN 313
GEK L+LVDLA SE ++S M G + R + N
Sbjct: 256 TGEKSQGILNLVDLAGSERLNSSMVVGERLRETQSIN 292
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 59/112 (52%), Gaps = 16/112 (14%)
Query: 62 SNSTHAVFSVVLTQTLVDTKSGVEGEKV-ARLSLVDLAGSERAVKTGAVGERLKEGSNIN 120
S+ +H++F + L + K+ GEK L+LVDLAGSER + VGERL+E +IN
Sbjct: 238 SSRSHSIFIIHL-----EGKNEGTGEKSQGILNLVDLAGSERLNSSMVVGERLRETQSIN 292
Query: 121 KQEALESMGISVQASGIKVEKNKYYLVNLNADPSLNELLVYYLKDCTLIGSS 172
K +L +G + A + ++ P N L Y L+ +LIGSS
Sbjct: 293 K--SLSCLGDVIHALNSPDGQKRHI-------PFRNSKLTYLLQ-YSLIGSS 334
>pdb|3BFN|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 22
Length = 388
Score = 107 bits (266), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 63/157 (40%), Positives = 91/157 (57%), Gaps = 10/157 (6%)
Query: 304 NKSRTVAATNMNSESSRSHAVFSVVLTQTLVDTKSGVEGEKVARLSLVDLAGSERAVKTG 363
+++RTV AT +N SSRSHAV V + Q + ++ +L L+DLAGSE +TG
Sbjct: 208 SRNRTVGATRLNQRSSRSHAVLLVKVDQR---ERLAPFRQREGKLYLIDLAGSEDNRRTG 264
Query: 364 AVGERLKEGSNINKSLTTLGLVISKLADSTSSSKNKDKFVPYRDSVLTWLLKDNLGGNSK 423
G RLKE IN SL LG V+ L VPYRDS LT LL+D+LGG++
Sbjct: 265 NKGLRLKESGAINTSLFVLGKVVDALNQGLPR-------VPYRDSKLTRLLQDSLGGSAH 317
Query: 424 TVMVATVSPAADNYEETLSTLRYADRAKRIVNHAVDN 460
++++A ++P Y +T+S L +A R+K ++N N
Sbjct: 318 SILIANIAPERRFYLDTVSALNFAARSKEVINRPFTN 354
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 57/105 (54%), Gaps = 11/105 (10%)
Query: 194 QVHDLLDPKANKQSLKVREH---NVLGPYVDGLSQLAVTSFQEIDSLMAEGNKSRTVAAT 250
+V DLLDP + L +RE N+L P GLSQ ++SF + + +++RTV AT
Sbjct: 162 KVLDLLDPASG--DLVIREDCRGNILIP---GLSQKPISSFADFERHFLPASRNRTVGAT 216
Query: 251 NMNSESSRSHAVFSVVLTQTLVDTKSGVEGEKVARLSLVDLASEE 295
+N SSRSHAV V + Q + ++ +L L+DLA E
Sbjct: 217 RLNQRSSRSHAVLLVKVDQR---ERLAPFRQREGKLYLIDLAGSE 258
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 62 SNSTHAVFSVVLTQTLVDTKSGVEGEKVARLSLVDLAGSERAVKTGAVGERLKEGSNIN 120
S+ +HAV V + Q + ++ +L L+DLAGSE +TG G RLKE IN
Sbjct: 222 SSRSHAVLLVKVDQR---ERLAPFRQREGKLYLIDLAGSEDNRRTGNKGLRLKESGAIN 277
>pdb|2HEH|A Chain A, Crystal Structure Of The Kif2c Motor Domain (Casp Target)
Length = 387
Score = 106 bits (264), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 63/168 (37%), Positives = 96/168 (57%), Gaps = 18/168 (10%)
Query: 292 ASEEIDSLMAEGNKSRTVAATNMNSESSRSHAVFSVVLTQTLVDTKSGVEGEKVARLSLV 351
+++++ ++ G+ RT T NS SSRSHA F ++L +G + SLV
Sbjct: 235 SADDVIKMIDMGSACRTSGQTFANSNSSRSHACFQIILR---------AKGRMHGKFSLV 285
Query: 352 DLAGSERAVKTGAVGERLK-EGSNINKSLTTLGLVISKLADSTSSSKNKDKFVPYRDSVL 410
DLAG+ER T + + + EG+ INKSL L I L + + + P+R+S L
Sbjct: 286 DLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHT-------PFRESKL 338
Query: 411 TWLLKDN-LGGNSKTVMVATVSPAADNYEETLSTLRYADRAKRIVNHA 457
T +L+D+ +G NS+T M+AT+SP + E TL+TLRYADR K + H+
Sbjct: 339 TQVLRDSFIGENSRTCMIATISPGISSCEYTLNTLRYADRVKELSPHS 386
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 83/193 (43%), Gaps = 28/193 (14%)
Query: 194 QVHDLLDPKANKQSLKVREHNVLGPYVDGLSQLAVTSFQEIDSLMAEGNKSRTVAATNMN 253
++ DLL+ KA L+V E V GL + V S ++ ++ G+ RT T N
Sbjct: 202 KLFDLLNKKAK---LRVLEDGKQQVQVVGLQEHLVNSADDVIKMIDMGSACRTSGQTFAN 258
Query: 254 SESSRSHAVFSVVLTQTLVDTKSGVEGEKVARLSLVDLASEEIDSLMAEGNKSRTVAATN 313
S SSRSHA F ++L +G + SLVDLA E + + ++ +
Sbjct: 259 SNSSRSHACFQIILR---------AKGRMHGKFSLVDLAGNERGADTSSADRQTRMEGAE 309
Query: 314 MNSE------------SSRSHAVF-SVVLTQTLVDTKSGVEGEKVARLSLVD--LAGSER 358
+N +++H F LTQ L D+ G E + ++ + ++ E
Sbjct: 310 INKSLLALKECIRALGQNKAHTPFRESKLTQVLRDSFIG-ENSRTCMIATISPGISSCEY 368
Query: 359 AVKTGAVGERLKE 371
+ T +R+KE
Sbjct: 369 TLNTLRYADRVKE 381
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 17/97 (17%)
Query: 39 IRKYEMIYSCRVSMLKMIYGLKASNSTHAVFSVVLTQTLVDTKSGVEGEKVARLSLVDLA 98
I+ +M +CR S + S+ +HA F ++L +G + SLVDLA
Sbjct: 240 IKMIDMGSACRTS--GQTFANSNSSRSHACFQIILR---------AKGRMHGKFSLVDLA 288
Query: 99 GSERAVKTGAVGERLK-EGSNINK-----QEALESMG 129
G+ER T + + + EG+ INK +E + ++G
Sbjct: 289 GNERGADTSSADRQTRMEGAEINKSLLALKECIRALG 325
>pdb|2GRY|A Chain A, Crystal Structure Of The Human Kif2 Motor Domain In
Complex With Adp
Length = 420
Score = 105 bits (261), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 65/162 (40%), Positives = 95/162 (58%), Gaps = 18/162 (11%)
Query: 294 EEIDSLMAEGNKSRTVAATNMNSESSRSHAVFSVVLTQTLVDTKSGVEGEKVARLSLVDL 353
E++ L+ GN RT T+ N+ SSRSHAVF ++L + +G+ + SL+DL
Sbjct: 275 EDVLKLIDIGNSCRTSGQTSANAHSSRSHAVFQIILRR---------KGKLHGKFSLIDL 325
Query: 354 AGSERAVKTGAVGERLK-EGSNINKSLTTLGLVISKLADSTSSSKNKDKFVPYRDSVLTW 412
AG+ER T + + + EG+ INKSL L I L +NK P+R S LT
Sbjct: 326 AGNERGADTSSADRQTRLEGAEINKSLLALKECIRALG------RNK-PHTPFRASKLTQ 378
Query: 413 LLKDN-LGGNSKTVMVATVSPAADNYEETLSTLRYADRAKRI 453
+L+D+ +G NS+T M+AT+SP + E TL+TLRYA+R K +
Sbjct: 379 VLRDSFIGENSRTCMIATISPGMASCENTLNTLRYANRVKEL 420
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 84/193 (43%), Gaps = 28/193 (14%)
Query: 194 QVHDLLDPKANKQSLKVREHNVLGPYVDGLSQLAVTSFQEIDSLMAEGNKSRTVAATNMN 253
+V DLL+ K L+V E V GL + V +++ L+ GN RT T+ N
Sbjct: 240 KVFDLLN---RKTKLRVLEDGKQQVQVVGLQEREVKCVEDVLKLIDIGNSCRTSGQTSAN 296
Query: 254 SESSRSHAVFSVVLTQTLVDTKSGVEGEKVARLSLVDLASEEIDSLMAEGNKSRTVAATN 313
+ SSRSHAVF ++L + +G+ + SL+DLA E + + ++ +
Sbjct: 297 AHSSRSHAVFQIILRR---------KGKLHGKFSLIDLAGNERGADTSSADRQTRLEGAE 347
Query: 314 MNSE------------SSRSHAVFSVV-LTQTLVDTKSGVEGEKVARLSLVD--LAGSER 358
+N ++ H F LTQ L D+ G E + ++ + +A E
Sbjct: 348 INKSLLALKECIRALGRNKPHTPFRASKLTQVLRDSFIG-ENSRTCMIATISPGMASCEN 406
Query: 359 AVKTGAVGERLKE 371
+ T R+KE
Sbjct: 407 TLNTLRYANRVKE 419
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 41/74 (55%), Gaps = 15/74 (20%)
Query: 62 SNSTHAVFSVVLTQTLVDTKSGVEGEKVARLSLVDLAGSERAVKTGAVGERLK-EGSNIN 120
S+ +HAVF ++L + +G+ + SL+DLAG+ER T + + + EG+ IN
Sbjct: 299 SSRSHAVFQIILRR---------KGKLHGKFSLIDLAGNERGADTSSADRQTRLEGAEIN 349
Query: 121 K-----QEALESMG 129
K +E + ++G
Sbjct: 350 KSLLALKECIRALG 363
>pdb|3EDL|D Chain D, Kinesin13-Microtubule Ring Complex
Length = 331
Score = 102 bits (254), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 64/164 (39%), Positives = 94/164 (57%), Gaps = 18/164 (10%)
Query: 292 ASEEIDSLMAEGNKSRTVAATNMNSESSRSHAVFSVVLTQTLVDTKSGVEGEKVARLSLV 351
++++ ++ G+ RT T NS SSRSHA F Q L+ TK + G + SLV
Sbjct: 183 CADDVIKMINMGSACRTSGQTFANSNSSRSHACF-----QILLRTKGRLHG----KFSLV 233
Query: 352 DLAGSERAVKTGAVGERLK-EGSNINKSLTTLGLVISKLADSTSSSKNKDKFVPYRDSVL 410
DLAG+ER T + + + EG+ INKSL L I L + + + P+R+S L
Sbjct: 234 DLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHT-------PFRESKL 286
Query: 411 TWLLKDN-LGGNSKTVMVATVSPAADNYEETLSTLRYADRAKRI 453
T +L+D+ +G NS+T M+A +SP + E TL+TLRYADR K +
Sbjct: 287 TQVLRDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRVKEL 330
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 87/193 (45%), Gaps = 28/193 (14%)
Query: 194 QVHDLLDPKANKQSLKVREHNVLGPYVDGLSQLAVTSFQEIDSLMAEGNKSRTVAATNMN 253
+V DLL+ KA L+V E + V GL + VT ++ ++ G+ RT T N
Sbjct: 150 KVFDLLNKKAK---LRVLEDSRQQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFAN 206
Query: 254 SESSRSHAVFSVVLTQTLVDTKSGVEGEKVARLSLVDLASEEIDSLMAEGNKSRTVAATN 313
S SSRSHA F Q L+ TK + G + SLVDLA E + + ++ +
Sbjct: 207 SNSSRSHACF-----QILLRTKGRLHG----KFSLVDLAGNERGADTSSADRQTRMEGAE 257
Query: 314 MNSE------------SSRSHAVF-SVVLTQTLVDTKSGVEGEKVARLSLVD--LAGSER 358
+N +++H F LTQ L D+ G E + ++++ ++ E
Sbjct: 258 INKSLLALKECIRALGQNKAHTPFRESKLTQVLRDSFIG-ENSRTCMIAMISPGISSCEY 316
Query: 359 AVKTGAVGERLKE 371
+ T +R+KE
Sbjct: 317 TLNTLRYADRVKE 329
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 48/97 (49%), Gaps = 17/97 (17%)
Query: 39 IRKYEMIYSCRVSMLKMIYGLKASNSTHAVFSVVLTQTLVDTKSGVEGEKVARLSLVDLA 98
I+ M +CR S + S+ +HA F Q L+ TK + G + SLVDLA
Sbjct: 188 IKMINMGSACRTS--GQTFANSNSSRSHACF-----QILLRTKGRLHG----KFSLVDLA 236
Query: 99 GSERAVKTGAVGERLK-EGSNINK-----QEALESMG 129
G+ER T + + + EG+ INK +E + ++G
Sbjct: 237 GNERGADTSSADRQTRMEGAEINKSLLALKECIRALG 273
>pdb|1V8J|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With Mg-adp
pdb|1V8K|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With
Mg-Amppnp
Length = 410
Score = 102 bits (254), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 64/164 (39%), Positives = 94/164 (57%), Gaps = 18/164 (10%)
Query: 292 ASEEIDSLMAEGNKSRTVAATNMNSESSRSHAVFSVVLTQTLVDTKSGVEGEKVARLSLV 351
++++ ++ G+ RT T NS SSRSHA F Q L+ TK + G + SLV
Sbjct: 255 CADDVIKMINMGSACRTSGQTFANSNSSRSHACF-----QILLRTKGRLHG----KFSLV 305
Query: 352 DLAGSERAVKTGAVGERLK-EGSNINKSLTTLGLVISKLADSTSSSKNKDKFVPYRDSVL 410
DLAG+ER T + + + EG+ INKSL L I L + + + P+R+S L
Sbjct: 306 DLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHT-------PFRESKL 358
Query: 411 TWLLKDN-LGGNSKTVMVATVSPAADNYEETLSTLRYADRAKRI 453
T +L+D+ +G NS+T M+A +SP + E TL+TLRYADR K +
Sbjct: 359 TQVLRDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRVKEL 402
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 57/207 (27%), Positives = 93/207 (44%), Gaps = 30/207 (14%)
Query: 182 NLKINFGLFFCF--QVHDLLDPKANKQSLKVREHNVLGPYVDGLSQLAVTSFQEIDSLMA 239
NL++ F + +V DLL+ KA L+V E + V GL + VT ++ ++
Sbjct: 208 NLEVYVTFFEIYNGKVFDLLNKKAK---LRVLEDSRQQVQVVGLQEYLVTCADDVIKMIN 264
Query: 240 EGNKSRTVAATNMNSESSRSHAVFSVVLTQTLVDTKSGVEGEKVARLSLVDLASEEIDSL 299
G+ RT T NS SSRSHA F Q L+ TK + G + SLVDLA E +
Sbjct: 265 MGSACRTSGQTFANSNSSRSHACF-----QILLRTKGRLHG----KFSLVDLAGNERGAD 315
Query: 300 MAEGNKSRTVAATNMNSE------------SSRSHAVF-SVVLTQTLVDTKSGVEGEKVA 346
+ ++ + +N +++H F LTQ L D+ G E +
Sbjct: 316 TSSADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRESKLTQVLRDSFIG-ENSRTC 374
Query: 347 RLSLVD--LAGSERAVKTGAVGERLKE 371
++++ ++ E + T +R+KE
Sbjct: 375 MIAMISPGISSCEYTLNTLRYADRVKE 401
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 48/97 (49%), Gaps = 17/97 (17%)
Query: 39 IRKYEMIYSCRVSMLKMIYGLKASNSTHAVFSVVLTQTLVDTKSGVEGEKVARLSLVDLA 98
I+ M +CR S + S+ +HA F Q L+ TK + G + SLVDLA
Sbjct: 260 IKMINMGSACRTS--GQTFANSNSSRSHACF-----QILLRTKGRLHG----KFSLVDLA 308
Query: 99 GSERAVKTGAVGERLK-EGSNINK-----QEALESMG 129
G+ER T + + + EG+ INK +E + ++G
Sbjct: 309 GNERGADTSSADRQTRMEGAEINKSLLALKECIRALG 345
>pdb|3PXN|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Kin10NOD IN Complex With Divalent Manganese And Adp
Length = 344
Score = 95.5 bits (236), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 61/173 (35%), Positives = 97/173 (56%), Gaps = 18/173 (10%)
Query: 282 KVARLSLVDLASE-EIDSLMAEGNKSRTVAATNMNSESSRSHAVFSVVLTQTLVDTKSGV 340
+ R + + L S+ ++ ++ G ++R V TNMNS SSRSHA+ ++ V +K+
Sbjct: 180 RCQRCTCLPLHSQADLHHILELGTRNRRVRPTNMNSNSSRSHAIVTI-----HVKSKT-- 232
Query: 341 EGEKVARLSLVDLAGSERAVKTGAVGERLKEGSNINKSLTTLGLVISKLADSTSSSKNKD 400
+R+++VDLAGSE +TG G +EG NIN L ++ V+ +A +
Sbjct: 233 ---HHSRMNIVDLAGSEGVRRTGHEGVARQEGVNINLGLLSINKVVMSMAAGHT------ 283
Query: 401 KFVPYRDSVLTWLLKDNLGGNSKTVMVATVSPAADNYEETLSTLRYADRAKRI 453
+PYRDSVLT +L+ +L S +A +SP + ETLSTLR+ AK++
Sbjct: 284 -VIPYRDSVLTTVLQASLTAQSYLTFLACISPHQCDLSETLSTLRFGTSAKKL 335
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 40/70 (57%), Gaps = 10/70 (14%)
Query: 226 LAVTSFQEIDSLMAEGNKSRTVAATNMNSESSRSHAVFSVVLTQTLVDTKSGVEGEKVAR 285
L + S ++ ++ G ++R V TNMNS SSRSHA+ ++ V +K+ +R
Sbjct: 187 LPLHSQADLHHILELGTRNRRVRPTNMNSNSSRSHAIVTI-----HVKSKT-----HHSR 236
Query: 286 LSLVDLASEE 295
+++VDLA E
Sbjct: 237 MNIVDLAGSE 246
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 90 ARLSLVDLAGSERAVKTGAVGERLKEGSNIN 120
+R+++VDLAGSE +TG G +EG NIN
Sbjct: 235 SRMNIVDLAGSEGVRRTGHEGVARQEGVNIN 265
>pdb|1RY6|A Chain A, Crystal Structure Of Internal Kinesin Motor Domain
Length = 360
Score = 95.1 bits (235), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 59/162 (36%), Positives = 91/162 (56%), Gaps = 15/162 (9%)
Query: 291 LASEEIDSLMAEGNKSRTVAATNMNSESSRSHAVFSVVLTQTLVDTKSGVEGEKVARLSL 350
L EE+ M +G R + + N ESSRSHA+ ++ D K + + +++
Sbjct: 182 LTKEELILKMIDGVLLRKIGVNSQNDESSRSHAILNI-------DLKDINKNTSLGKIAF 234
Query: 351 VDLAGSERAVKTGAVGERLK-EGSNINKSLTTLGLVISKLADSTSSSKNKDKFVPYRDSV 409
+DLAGSER T + ++ + +G+NIN+SL L I + S KN +P+RDS
Sbjct: 235 IDLAGSERGADTVSQNKQTQTDGANINRSLLALKECIRAM----DSDKNH---IPFRDSE 287
Query: 410 LTWLLKDNLGGNSKTVMVATVSPAADNYEETLSTLRYADRAK 451
LT +L+D G SK++M+A +SP E+TL+TLRY+ R K
Sbjct: 288 LTKVLRDIFVGKSKSIMIANISPTISCCEQTLNTLRYSSRVK 329
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 61/131 (46%), Gaps = 10/131 (7%)
Query: 185 INFGLFFCFQVHDLLDPKANKQSLKVREHNVLGPYVDGLSQLAVTSFQEIDSLMAEGNKS 244
I+F +C +++DLL + +L+ + V+ V L L V + +E+ M +G
Sbjct: 141 ISFYEIYCGKLYDLLQKRKMVAALENGKKEVV---VKDLKILRVLTKEELILKMIDGVLL 197
Query: 245 RTVAATNMNSESSRSHAVFSVVLTQTLVDTKSGVEGEKVARLSLVDLASEEIDSLMAEGN 304
R + + N ESSRSHA+ + +D K + + +++ +DLA E + N
Sbjct: 198 RKIGVNSQNDESSRSHAILN-------IDLKDINKNTSLGKIAFIDLAGSERGADTVSQN 250
Query: 305 KSRTVAATNMN 315
K N+N
Sbjct: 251 KQTQTDGANIN 261
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 47/94 (50%), Gaps = 24/94 (25%)
Query: 52 MLKMIYGL-----------KASNSTHAVFSVVLTQTLVDTKSGVEGEKVARLSLVDLAGS 100
+LKMI G+ S+ +HA+ ++ D K + + +++ +DLAGS
Sbjct: 188 ILKMIDGVLLRKIGVNSQNDESSRSHAILNI-------DLKDINKNTSLGKIAFIDLAGS 240
Query: 101 ERAVKTGAVGERLK-EGSNINK-----QEALESM 128
ER T + ++ + +G+NIN+ +E + +M
Sbjct: 241 ERGADTVSQNKQTQTDGANINRSLLALKECIRAM 274
>pdb|3DC4|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Adp
pdb|3DCB|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Amppnp
pdb|3DCO|N Chain N, Drosophila Nod (3dc4) And Bovine Tubulin (1jff) Docked
Into The 11-Angstrom Cryo-Em Map Of Nucleotide-Free Nod
Complexed To The Microtubule
Length = 344
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 61/171 (35%), Positives = 95/171 (55%), Gaps = 18/171 (10%)
Query: 282 KVARLSLVDLASE-EIDSLMAEGNKSRTVAATNMNSESSRSHAVFSVVLTQTLVDTKSGV 340
+ R + + L S+ ++ ++ G ++R V TNMNS SSRSHA+ ++ V +K+
Sbjct: 180 RCQRCTCLPLHSQADLHHILELGTRNRRVRPTNMNSNSSRSHAIVTI-----HVKSKT-- 232
Query: 341 EGEKVARLSLVDLAGSERAVKTGAVGERLKEGSNINKSLTTLGLVISKLADSTSSSKNKD 400
+R+++VDLAGSE +TG G +EG NIN L ++ V+ +A +
Sbjct: 233 ---HHSRMNIVDLAGSEGVRRTGHEGVARQEGVNINLGLLSINKVVMSMAAGHT------ 283
Query: 401 KFVPYRDSVLTWLLKDNLGGNSKTVMVATVSPAADNYEETLSTLRYADRAK 451
+PYRDSVLT +L+ +L S +A +SP + ETLSTLR+ AK
Sbjct: 284 -VIPYRDSVLTTVLQASLTAQSYLTFLACISPHQCDLSETLSTLRFGTSAK 333
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 40/70 (57%), Gaps = 10/70 (14%)
Query: 226 LAVTSFQEIDSLMAEGNKSRTVAATNMNSESSRSHAVFSVVLTQTLVDTKSGVEGEKVAR 285
L + S ++ ++ G ++R V TNMNS SSRSHA+ ++ V +K+ +R
Sbjct: 187 LPLHSQADLHHILELGTRNRRVRPTNMNSNSSRSHAIVTI-----HVKSKT-----HHSR 236
Query: 286 LSLVDLASEE 295
+++VDLA E
Sbjct: 237 MNIVDLAGSE 246
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 90 ARLSLVDLAGSERAVKTGAVGERLKEGSNIN 120
+R+++VDLAGSE +TG G +EG NIN
Sbjct: 235 SRMNIVDLAGSEGVRRTGHEGVARQEGVNIN 265
>pdb|1CZ7|A Chain A, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|B Chain B, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|C Chain C, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|D Chain D, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
Length = 406
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 73/189 (38%), Positives = 96/189 (50%), Gaps = 33/189 (17%)
Query: 291 LASEEIDSLMAEGNKSRTVAATNMNSESSRSHAVFSVVLTQTLVDTKSGVEGEK----VA 346
L + LM +R A+T N SSRSHAV + L G EK V
Sbjct: 229 LDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELI--------GRHAEKQEISVG 280
Query: 347 RLSLVDLAGSERAVKTGAVGERLKEGSNINKSLTTLGLVISKLADSTSSSKNKDKFVPYR 406
++LVDLAGSE + KT R+ E NIN+SL+ L VI L K +PYR
Sbjct: 281 SINLVDLAGSE-SPKTST---RMTETKNINRSLSELTNVILALLQ-------KQDHIPYR 329
Query: 407 DSVLTWLLKDNLGGNSKTVMVATVSPAADNYEETLSTLRYA--------DRAKRIVNHAV 458
+S LT LL +LGGNSKT+M VSP D ++E++ +LR+A +AKR N +
Sbjct: 330 NSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSCKMTKAKR--NRYL 387
Query: 459 DNLGGNSKT 467
+N NS T
Sbjct: 388 NNSVANSST 396
Score = 37.0 bits (84), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 48/105 (45%), Gaps = 12/105 (11%)
Query: 195 VHDLLDPKANKQSLKVREHNVLGPYVDGLSQLAVTSFQEIDSLMAEGNKSRTVAATNMNS 254
++DLL + +++ ++N YV +++ V + LM +R A+T N
Sbjct: 195 LYDLLSNEQKDMEIRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNE 254
Query: 255 ESSRSHAVFSVVLTQTLVDTKSGVEGEK----VARLSLVDLASEE 295
SSRSHAV + L G EK V ++LVDLA E
Sbjct: 255 RSSRSHAVTKLELI--------GRHAEKQEISVGSINLVDLAGSE 291
>pdb|3U06|A Chain A, Crystal Structure Of The Kinesin-14 Ncdg347d
pdb|3U06|B Chain B, Crystal Structure Of The Kinesin-14 Ncdg347d
Length = 412
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 73/189 (38%), Positives = 96/189 (50%), Gaps = 33/189 (17%)
Query: 291 LASEEIDSLMAEGNKSRTVAATNMNSESSRSHAVFSVVLTQTLVDTKSGVEGEK----VA 346
L + LM +R A+T N SSRSHAV + L G EK V
Sbjct: 235 LDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELI--------GRHAEKQEISVG 286
Query: 347 RLSLVDLAGSERAVKTGAVGERLKEGSNINKSLTTLGLVISKLADSTSSSKNKDKFVPYR 406
++LVDLAGSE + KT R+ E NIN+SL+ L VI L K +PYR
Sbjct: 287 SINLVDLAGSE-SPKTST---RMTETKNINRSLSELTNVILALLQ-------KQDHIPYR 335
Query: 407 DSVLTWLLKDNLGGNSKTVMVATVSPAADNYEETLSTLRYA--------DRAKRIVNHAV 458
+S LT LL +LGGNSKT+M VSP D ++E++ +LR+A +AKR N +
Sbjct: 336 NSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSCKMTKAKR--NRYL 393
Query: 459 DNLGGNSKT 467
+N NS T
Sbjct: 394 NNSVANSST 402
Score = 36.6 bits (83), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 48/105 (45%), Gaps = 12/105 (11%)
Query: 195 VHDLLDPKANKQSLKVREHNVLGPYVDGLSQLAVTSFQEIDSLMAEGNKSRTVAATNMNS 254
++DLL + +++ ++N YV +++ V + LM +R A+T N
Sbjct: 201 LYDLLSNEQKDMEIRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNE 260
Query: 255 ESSRSHAVFSVVLTQTLVDTKSGVEGEK----VARLSLVDLASEE 295
SSRSHAV + L G EK V ++LVDLA E
Sbjct: 261 RSSRSHAVTKLELI--------GRHAEKQEISVGSINLVDLAGSE 297
>pdb|2NCD|A Chain A, Ncd (Non-Claret Disjunctional) Dimer From D. Melanogaster
Length = 420
Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 72/181 (39%), Positives = 94/181 (51%), Gaps = 33/181 (18%)
Query: 299 LMAEGNKSRTVAATNMNSESSRSHAVFSVVLTQTLVDTKSGVEGEK----VARLSLVDLA 354
LM +R A+T N SSRSHAV + L G EK V ++LVDLA
Sbjct: 251 LMHTAKMNRATASTAGNERSSRSHAVTKLELI--------GRHAEKQEISVGSINLVDLA 302
Query: 355 GSERAVKTGAVGERLKEGSNINKSLTTLGLVISKLADSTSSSKNKDKFVPYRDSVLTWLL 414
GSE + KT R+ E NIN+SL+ L VI L K +PYR+S LT LL
Sbjct: 303 GSE-SPKTST---RMTETKNINRSLSELTNVILALLQ-------KQDHIPYRNSKLTHLL 351
Query: 415 KDNLGGNSKTVMVATVSPAADNYEETLSTLRYA--------DRAKRIVNHAVDNLGGNSK 466
+LGGNSKT+M VSP D ++E++ +LR+A +AKR N ++N NS
Sbjct: 352 MPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSCKMTKAKR--NRYLNNSVANSS 409
Query: 467 T 467
T
Sbjct: 410 T 410
Score = 36.6 bits (83), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 48/105 (45%), Gaps = 12/105 (11%)
Query: 195 VHDLLDPKANKQSLKVREHNVLGPYVDGLSQLAVTSFQEIDSLMAEGNKSRTVAATNMNS 254
++DLL + +++ ++N YV +++ V + LM +R A+T N
Sbjct: 209 LYDLLSNEQKDMEIRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNE 268
Query: 255 ESSRSHAVFSVVLTQTLVDTKSGVEGEK----VARLSLVDLASEE 295
SSRSHAV + L G EK V ++LVDLA E
Sbjct: 269 RSSRSHAVTKLELI--------GRHAEKQEISVGSINLVDLAGSE 305
>pdb|3L1C|A Chain A, Kinesin-14 Protein Ncd, T436s Mutant
pdb|3L1C|B Chain B, Kinesin-14 Protein Ncd, T436s Mutant
Length = 383
Score = 89.4 bits (220), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 65/161 (40%), Positives = 85/161 (52%), Gaps = 23/161 (14%)
Query: 291 LASEEIDSLMAEGNKSRTVAATNMNSESSRSHAVFSVVLTQTLVDTKSGVEGEK----VA 346
L + LM +R A+T N SSRSHAV + L G EK V
Sbjct: 232 LDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELI--------GRHAEKQEISVG 283
Query: 347 RLSLVDLAGSERAVKTGAVGERLKEGSNINKSLTTLGLVISKLADSTSSSKNKDKFVPYR 406
++LVDLAGSE + KT R+ E NIN+SL+ L VI L K +PYR
Sbjct: 284 SINLVDLAGSE-SPKTST---RMTETKNINRSLSELTNVILALLQ-------KQDHIPYR 332
Query: 407 DSVLTWLLKDNLGGNSKTVMVATVSPAADNYEETLSTLRYA 447
+S LT LL +LGGNSKT+M VSP D ++E++ +LR+A
Sbjct: 333 NSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFA 373
Score = 36.6 bits (83), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 48/105 (45%), Gaps = 12/105 (11%)
Query: 195 VHDLLDPKANKQSLKVREHNVLGPYVDGLSQLAVTSFQEIDSLMAEGNKSRTVAATNMNS 254
++DLL + +++ ++N YV +++ V + LM +R A+T N
Sbjct: 198 LYDLLSNEQKDMEIRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNE 257
Query: 255 ESSRSHAVFSVVLTQTLVDTKSGVEGEK----VARLSLVDLASEE 295
SSRSHAV + L G EK V ++LVDLA E
Sbjct: 258 RSSRSHAVTKLELI--------GRHAEKQEISVGSINLVDLAGSE 294
>pdb|1N6M|A Chain A, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
pdb|1N6M|B Chain B, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
Length = 409
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 72/189 (38%), Positives = 95/189 (50%), Gaps = 33/189 (17%)
Query: 291 LASEEIDSLMAEGNKSRTVAATNMNSESSRSHAVFSVVLTQTLVDTKSGVEGEK----VA 346
L + LM +R A+T N SSRSHAV + L G EK V
Sbjct: 232 LDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELI--------GRHAEKQEISVG 283
Query: 347 RLSLVDLAGSERAVKTGAVGERLKEGSNINKSLTTLGLVISKLADSTSSSKNKDKFVPYR 406
++LVDLAGSE + KT R+ E NI +SL+ L VI L K +PYR
Sbjct: 284 SINLVDLAGSE-SPKTST---RMTETKNIKRSLSELTNVILALLQ-------KQDHIPYR 332
Query: 407 DSVLTWLLKDNLGGNSKTVMVATVSPAADNYEETLSTLRYA--------DRAKRIVNHAV 458
+S LT LL +LGGNSKT+M VSP D ++E++ +LR+A +AKR N +
Sbjct: 333 NSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSCKMTKAKR--NRYL 390
Query: 459 DNLGGNSKT 467
+N NS T
Sbjct: 391 NNSVANSST 399
Score = 36.6 bits (83), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 48/105 (45%), Gaps = 12/105 (11%)
Query: 195 VHDLLDPKANKQSLKVREHNVLGPYVDGLSQLAVTSFQEIDSLMAEGNKSRTVAATNMNS 254
++DLL + +++ ++N YV +++ V + LM +R A+T N
Sbjct: 198 LYDLLSNEQKDMEIRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNE 257
Query: 255 ESSRSHAVFSVVLTQTLVDTKSGVEGEK----VARLSLVDLASEE 295
SSRSHAV + L G EK V ++LVDLA E
Sbjct: 258 RSSRSHAVTKLELI--------GRHAEKQEISVGSINLVDLAGSE 294
>pdb|2KIN|B Chain B, Kinesin (Monomeric) From Rattus Norvegicus
Length = 100
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/88 (48%), Positives = 54/88 (61%), Gaps = 6/88 (6%)
Query: 374 NINKSLTTLGLVISKLADSTSSSKNKDKFVPYRDSVLTWLLKDNLGGNSKTVMVATVSPA 433
NINKSL+ LG VIS LA+ T + VPYRDS +T +L+D+L GN +T +V SP+
Sbjct: 3 NINKSLSALGNVISALAEGTKT------HVPYRDSKMTRILQDSLDGNCRTTIVICCSPS 56
Query: 434 ADNYEETLSTLRYADRAKRIVNHAVDNL 461
N ET STL + RAK I N NL
Sbjct: 57 VFNEAETKSTLMFGQRAKTIKNTVSVNL 84
>pdb|3KIN|B Chain B, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|D Chain D, Kinesin (Dimeric) From Rattus Norvegicus
Length = 117
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 42/86 (48%), Positives = 53/86 (61%), Gaps = 6/86 (6%)
Query: 376 NKSLTTLGLVISKLADSTSSSKNKDKFVPYRDSVLTWLLKDNLGGNSKTVMVATVSPAAD 435
NKSL+ LG VIS LA+ T + VPYRDS +T +L+D+LGGN +T +V SP+
Sbjct: 1 NKSLSALGNVISALAEGTKT------HVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVF 54
Query: 436 NYEETLSTLRYADRAKRIVNHAVDNL 461
N ET STL + RAK I N NL
Sbjct: 55 NEAETKSTLMFGQRAKTIKNTVSVNL 80
>pdb|2KIN|A Chain A, Kinesin (Monomeric) From Rattus Norvegicus
pdb|3KIN|A Chain A, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|C Chain C, Kinesin (Dimeric) From Rattus Norvegicus
Length = 238
Score = 72.0 bits (175), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 47/127 (37%), Positives = 74/127 (58%), Gaps = 9/127 (7%)
Query: 169 IGSSDKNDIQLSGNLKINFGLFFCFQVHDLLDPKANKQSLKVREHNVLGPYVDGLSQLAV 228
I S D+N L ++K+++ + ++ DLLD +K +L V E PYV G ++ V
Sbjct: 119 IYSMDEN---LEFHIKVSYFEIYLDKIRDLLD--VSKTNLAVHEDKNRVPYVKGCTERFV 173
Query: 229 TSFQEIDSLMAEGNKSRTVAATNMNSESSRSHAVFSVVLTQTLVDTKSGVEGEKVARLSL 288
+S +E+ ++ EG +R VA TNMN SSRSH++F + + Q V+T+ + G +L L
Sbjct: 174 SSPEEVMDVIDEGKANRHVAVTNMNEHSSRSHSIFLINIKQENVETEKKLSG----KLYL 229
Query: 289 VDLASEE 295
VDLA E
Sbjct: 230 VDLAGSE 236
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 44/67 (65%), Gaps = 4/67 (5%)
Query: 292 ASEEIDSLMAEGNKSRTVAATNMNSESSRSHAVFSVVLTQTLVDTKSGVEGEKVARLSLV 351
+ EE+ ++ EG +R VA TNMN SSRSH++F + + Q V+T+ + G +L LV
Sbjct: 175 SPEEVMDVIDEGKANRHVAVTNMNEHSSRSHSIFLINIKQENVETEKKLSG----KLYLV 230
Query: 352 DLAGSER 358
DLAGSE+
Sbjct: 231 DLAGSEK 237
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 27/41 (65%), Gaps = 4/41 (9%)
Query: 62 SNSTHAVFSVVLTQTLVDTKSGVEGEKVARLSLVDLAGSER 102
S+ +H++F + + Q V+T+ + G +L LVDLAGSE+
Sbjct: 201 SSRSHSIFLINIKQENVETEKKLSG----KLYLVDLAGSEK 237
>pdb|3FM8|A Chain A, Crystal Structure Of Full Length Centaurin Alpha-1 Bound
With The Fha Domain Of Kif13b (Capri Target)
pdb|3FM8|B Chain B, Crystal Structure Of Full Length Centaurin Alpha-1 Bound
With The Fha Domain Of Kif13b (Capri Target)
pdb|3MDB|A Chain A, Crystal Structure Of The Ternary Complex Of Full Length
Centaurin Alpha-1, Kif13b Fha Domain, And Ip4
pdb|3MDB|B Chain B, Crystal Structure Of The Ternary Complex Of Full Length
Centaurin Alpha-1, Kif13b Fha Domain, And Ip4
Length = 124
Score = 70.1 bits (170), Expect = 3e-12, Method: Composition-based stats.
Identities = 33/46 (71%), Positives = 39/46 (84%)
Query: 136 GIKVEKNKYYLVNLNADPSLNELLVYYLKDCTLIGSSDKNDIQLSG 181
GIKV +K +LVNLNADP+LNELLVYYLK+ TLIGS++ DIQL G
Sbjct: 19 GIKVGDDKCFLVNLNADPALNELLVYYLKEHTLIGSANSQDIQLCG 64
>pdb|4EGX|A Chain A, Crystal Structure Of Kif1a Cc1-Fha Tandem
pdb|4EGX|B Chain B, Crystal Structure Of Kif1a Cc1-Fha Tandem
pdb|4EGX|C Chain C, Crystal Structure Of Kif1a Cc1-Fha Tandem
pdb|4EGX|D Chain D, Crystal Structure Of Kif1a Cc1-Fha Tandem
Length = 184
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 8/80 (10%)
Query: 112 RLKEGSNINKQEALESMGISVQASG----IKVEKNKYYLVNLNADPSLNELLVYYLKD-C 166
R E + ++ L MG++++ G + K +LVNLN DP ++E L+YY+KD
Sbjct: 33 RRTEAIRMEREALLAEMGVAMREDGGTLGVFSPKKTPHLVNLNEDPLMSECLLYYIKDGI 92
Query: 167 TLIGSSD---KNDIQLSGNL 183
T +G D + DI LSG+
Sbjct: 93 TRVGREDGERRQDIVLSGHF 112
>pdb|4EJQ|A Chain A, Crystal Structure Of Kif1a C-Cc1-Fha
pdb|4EJQ|B Chain B, Crystal Structure Of Kif1a C-Cc1-Fha
pdb|4EJQ|C Chain C, Crystal Structure Of Kif1a C-Cc1-Fha
pdb|4EJQ|D Chain D, Crystal Structure Of Kif1a C-Cc1-Fha
pdb|4EJQ|E Chain E, Crystal Structure Of Kif1a C-Cc1-Fha
pdb|4EJQ|F Chain F, Crystal Structure Of Kif1a C-Cc1-Fha
pdb|4EJQ|G Chain G, Crystal Structure Of Kif1a C-Cc1-Fha
pdb|4EJQ|H Chain H, Crystal Structure Of Kif1a C-Cc1-Fha
Length = 154
Score = 45.4 bits (106), Expect = 8e-05, Method: Composition-based stats.
Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 8/82 (9%)
Query: 110 GERLKEGSNINKQEALESMGISVQASG----IKVEKNKYYLVNLNADPSLNELLVYYLKD 165
G E + ++ L MG++++ G + K +LVNLN DP ++E L+YY+KD
Sbjct: 1 GSEFTEAIRMEREALLAEMGVAMREDGGTLGVFSPKKTPHLVNLNEDPLMSECLLYYIKD 60
Query: 166 -CTLIGSSD---KNDIQLSGNL 183
T +G D + DI LSG+
Sbjct: 61 GITRVGREDGERRQDIVLSGHF 82
>pdb|2EH0|A Chain A, Solution Structure Of The Fha Domain From Human Kinesin-
Like Protein Kif1b
Length = 130
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 29/41 (70%), Gaps = 4/41 (9%)
Query: 145 YLVNLNADPSLNELLVYYLKD-CTLIGSSD---KNDIQLSG 181
+LVNLN DP ++E L+YY+KD T +G +D + DI LSG
Sbjct: 10 HLVNLNEDPLMSECLLYYIKDGITRVGQADAERRQDIVLSG 50
>pdb|2G1L|A Chain A, Crystal Structure Of The Fha Domain Of Human Kinesin
Family Member C
Length = 104
Score = 37.4 bits (85), Expect = 0.022, Method: Composition-based stats.
Identities = 19/40 (47%), Positives = 28/40 (70%), Gaps = 2/40 (5%)
Query: 145 YLVNLNADPSLNELLVYYLKD-CTLIGSSDKNDIQLSGNL 183
+LVNLN DP ++E L+Y++KD T +G D DI+L+G
Sbjct: 5 HLVNLNEDPLMSECLLYHIKDGVTRVGQVDM-DIKLTGQF 43
>pdb|4AIB|A Chain A, Crystal Structure Of Ornithine Decarboxylase From
Entamoeba Histolytica.
pdb|4AIB|B Chain B, Crystal Structure Of Ornithine Decarboxylase From
Entamoeba Histolytica.
pdb|4AIB|C Chain C, Crystal Structure Of Ornithine Decarboxylase From
Entamoeba Histolytica.
pdb|4AIB|D Chain D, Crystal Structure Of Ornithine Decarboxylase From
Entamoeba Histolytica
Length = 395
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
Query: 206 QSLKVREHNVLGPYVDGLSQLAVTSFQEI----DSLMAEGNKSRTVA-ATNMNSESSRSH 260
++ K+ E + GP +G ++A E+ D L+ + T++ ATN N R+H
Sbjct: 320 ENTKMYESIIYGPSCNGSDKVATQELPEMEPGKDWLLFPNMGAYTISMATNFNGFEERNH 379
Query: 261 AVFSVVLTQTLV 272
++++ L T +
Sbjct: 380 VIYTLPLKSTKI 391
>pdb|3T2U|A Chain A, Structure Of Wuchereria Bancrofti Pi-Class Glutathione
S-Transferase
pdb|3T2U|B Chain B, Structure Of Wuchereria Bancrofti Pi-Class Glutathione
S-Transferase
Length = 208
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 48/113 (42%), Gaps = 8/113 (7%)
Query: 99 GSERAVKTGAVGERLKEGSNINKQEALESMGISVQASGI-----KVEKNKYYLVNLNADP 153
G + V++GA+ L N+N LE+ I + G+ K K Y + D
Sbjct: 56 GDHQIVQSGAILRHLARKHNLNGGNELETTHIDMFCEGVRDLHTKYTKMIYQAYDTEKDS 115
Query: 154 SLNELLVYYL-KDCTLIGSSD--KNDIQLSGNLKINFGLFFCFQVHDLLDPKA 203
+ ++L L K L+ + D KN I ++F LF +H +LDP
Sbjct: 116 YIKDILPVELAKFEKLLATRDDGKNFILGEKISYVDFVLFEELDIHQILDPHC 168
>pdb|1TU7|A Chain A, Structure Of Onchocerca Volvulus Pi-Class Glutathione
S-Transferase
pdb|1TU7|B Chain B, Structure Of Onchocerca Volvulus Pi-Class Glutathione
S-Transferase
pdb|1TU8|A Chain A, Structure Of Onchoverca Volvulus Pi-Class Glutathione S-
Transferase With Its Kompetitive Inhibitor S-Hexyl-Gsh
pdb|1TU8|B Chain B, Structure Of Onchoverca Volvulus Pi-Class Glutathione S-
Transferase With Its Kompetitive Inhibitor S-Hexyl-Gsh
pdb|1TU8|C Chain C, Structure Of Onchoverca Volvulus Pi-Class Glutathione S-
Transferase With Its Kompetitive Inhibitor S-Hexyl-Gsh
pdb|1TU8|D Chain D, Structure Of Onchoverca Volvulus Pi-Class Glutathione S-
Transferase With Its Kompetitive Inhibitor S-Hexyl-Gsh
Length = 208
Score = 28.9 bits (63), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 47/113 (41%), Gaps = 8/113 (7%)
Query: 99 GSERAVKTGAVGERLKEGSNINKQEALESMGISVQASG-----IKVEKNKYYLVNLNADP 153
G ++ V++GA+ L N+N + +E+ I + G +K + Y DP
Sbjct: 56 GDQQIVQSGAILRHLARKYNLNGENEMETTYIDMFCEGVRDLHVKYTRMIYMAYETEKDP 115
Query: 154 SLNELLVYYLKDCTLIGSSDKNDIQLSGNLKI---NFGLFFCFQVHDLLDPKA 203
+ +L L + ++ N L KI ++ LF VH +LDP
Sbjct: 116 YIKSILPGELAKFEKLLATRGNGRNLILGDKISYADYALFEELDVHQILDPHC 168
>pdb|2BPT|A Chain A, Structure Of The Nup1p:kap95p Complex
pdb|2BKU|B Chain B, Kap95p:rangtp Complex
pdb|2BKU|D Chain D, Kap95p:rangtp Complex
pdb|3EA5|B Chain B, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|D Chain D, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 861
Score = 28.5 bits (62), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 5/74 (6%)
Query: 60 KASNSTHAVFSVVLTQTLVDTKSGVEGEKVARLSLVDLAGSERAVKTGAVGERL-----K 114
K SN F+ + +Q L+D + +EG +A L+L + S+ +VKT +R
Sbjct: 31 KLSNDNFLQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQQFAQRWITQVSP 90
Query: 115 EGSNINKQEALESM 128
E N K AL ++
Sbjct: 91 EAKNQIKTNALTAL 104
Score = 28.5 bits (62), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 38/72 (52%)
Query: 297 DSLMAEGNKSRTVAATNMNSESSRSHAVFSVVLTQTLVDTKSGVEGEKVARLSLVDLAGS 356
+S+++ R + T + S+ + F+ + +Q L+D + +EG +A L+L + S
Sbjct: 12 NSILSPDQNIRLTSETQLKKLSNDNFLQFAGLSSQVLIDENTKLEGRILAALTLKNELVS 71
Query: 357 ERAVKTGAVGER 368
+ +VKT +R
Sbjct: 72 KDSVKTQQFAQR 83
>pdb|3ND2|A Chain A, Structure Of Yeast Importin-Beta (Kap95p)
Length = 861
Score = 28.5 bits (62), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 5/74 (6%)
Query: 60 KASNSTHAVFSVVLTQTLVDTKSGVEGEKVARLSLVDLAGSERAVKTGAVGERL-----K 114
K SN F+ + +Q L+D + +EG +A L+L + S+ +VKT +R
Sbjct: 31 KLSNDNFLQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQQFAQRWITQVSP 90
Query: 115 EGSNINKQEALESM 128
E N K AL ++
Sbjct: 91 EAKNQIKTNALTAL 104
Score = 28.5 bits (62), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 38/72 (52%)
Query: 297 DSLMAEGNKSRTVAATNMNSESSRSHAVFSVVLTQTLVDTKSGVEGEKVARLSLVDLAGS 356
+S+++ R + T + S+ + F+ + +Q L+D + +EG +A L+L + S
Sbjct: 12 NSILSPDQNIRLTSETQLKKLSNDNFLQFAGLSSQVLIDENTKLEGRILAALTLKNELVS 71
Query: 357 ERAVKTGAVGER 368
+ +VKT +R
Sbjct: 72 KDSVKTQQFAQR 83
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.128 0.340
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,868,178
Number of Sequences: 62578
Number of extensions: 532468
Number of successful extensions: 1470
Number of sequences better than 100.0: 77
Number of HSP's better than 100.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1086
Number of HSP's gapped (non-prelim): 269
length of query: 544
length of database: 14,973,337
effective HSP length: 104
effective length of query: 440
effective length of database: 8,465,225
effective search space: 3724699000
effective search space used: 3724699000
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 54 (25.4 bits)