RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy12523
(544 letters)
>gnl|CDD|238661 cd01365, KISc_KIF1A_KIF1B, Kinesin motor domain, KIF1_like
proteins. KIF1A (Unc104) transports synaptic vesicles to
the nerve terminal, KIF1B has been implicated in
transport of mitochondria. Both proteins are expressed
in neurons. This catalytic (head) domain has ATPase
activity and belongs to the larger group of P-loop
NTPases. Kinesins are microtubule-dependent molecular
motors that play important roles in intracellular
transport and in cell division. In most kinesins, the
motor domain is found at the N-terminus (N-type). N-type
kinesins are (+) end-directed motors, i.e. they
transport cargo towards the (+) end of the microtubule.
In contrast to the majority of dimeric kinesins, most
KIF1A/Unc104 kinesins are monomeric motors. A
lysine-rich loop in KIF1A binds to the negatively
charged C-terminus of tubulin and compensates for the
lack of a second motor domain, allowing KIF1A to move
processively.
Length = 356
Score = 301 bits (774), Expect = 2e-98
Identities = 128/185 (69%), Positives = 150/185 (81%), Gaps = 2/185 (1%)
Query: 278 VEGEKVARLSLVDLAS-EEIDSLMAEGNKSRTVAATNMNSESSRSHAVFSVVLTQTLVDT 336
V G V LS V + S E+I +L+ EGNKSRT A+TNMN SSRSHAVF++VLTQ +D
Sbjct: 172 VLGPYVEDLSKVAVTSYEDIQNLLEEGNKSRTTASTNMNDTSSRSHAVFTIVLTQKKLDK 231
Query: 337 KSGVEGEKVARLSLVDLAGSERAVKTGAVGERLKEGSNINKSLTTLGLVISKLAD-STSS 395
++ + EKV+++SLVDLAGSERA TGA G+RLKEGSNINKSLTTLG VIS LAD S++
Sbjct: 232 ETDLTTEKVSKISLVDLAGSERASSTGAEGDRLKEGSNINKSLTTLGKVISALADNSSAK 291
Query: 396 SKNKDKFVPYRDSVLTWLLKDNLGGNSKTVMVATVSPAADNYEETLSTLRYADRAKRIVN 455
SK K F+PYRDSVLTWLLK+NLGGNSKT M+AT+SPA NYEETLSTLRYADRAK+IVN
Sbjct: 292 SKKKSSFIPYRDSVLTWLLKENLGGNSKTAMIATISPADINYEETLSTLRYADRAKKIVN 351
Query: 456 HAVDN 460
AV N
Sbjct: 352 VAVVN 356
Score = 106 bits (267), Expect = 3e-25
Identities = 60/170 (35%), Positives = 83/170 (48%), Gaps = 53/170 (31%)
Query: 1 MGSQDNKGIIPRLCDSLFDLIAKQESSELT----------YNPYIR-----TPIRKYEMI 45
MG ++ KGIIPRLC+ LF I ++ L+ YN +R K
Sbjct: 107 MGYKEEKGIIPRLCEELFQRIESKKEQNLSYEVEVSYMEIYNEKVRDLLNPKKKNKGN-- 164
Query: 46 YSCRV-------------SML----------KMIYGLKA-----------SNSTHAVFSV 71
+V S + + G K+ S+ +HAVF++
Sbjct: 165 --LKVREHPVLGPYVEDLSKVAVTSYEDIQNLLEEGNKSRTTASTNMNDTSSRSHAVFTI 222
Query: 72 VLTQTLVDTKSGVEGEKVARLSLVDLAGSERAVKTGAVGERLKEGSNINK 121
VLTQ +D ++ + EKV+++SLVDLAGSERA TGA G+RLKEGSNINK
Sbjct: 223 VLTQKKLDKETDLTTEKVSKISLVDLAGSERASSTGAEGDRLKEGSNINK 272
>gnl|CDD|214526 smart00129, KISc, Kinesin motor, catalytic domain. ATPase.
Microtubule-dependent molecular motors that play
important roles in intracellular transport of organelles
and in cell division.
Length = 335
Score = 249 bits (637), Expect = 4e-78
Identities = 105/189 (55%), Positives = 137/189 (72%), Gaps = 11/189 (5%)
Query: 273 DTKSGVEGEKVARLSLVDLAS-EEIDSLMAEGNKSRTVAATNMNSESSRSHAVFSVVLTQ 331
D K GV V L+ + ++S EE+ +L+ +GNK+RTVAAT MN ESSRSHAVF++ + Q
Sbjct: 157 DEKGGV---YVKGLTEISVSSFEEVYNLLEKGNKNRTVAATKMNEESSRSHAVFTITVEQ 213
Query: 332 TLVDTKSGVEGEKVARLSLVDLAGSERAVKTGAVGERLKEGSNINKSLTTLGLVISKLAD 391
+ ++ SG K ++L+LVDLAGSERA KTGA G+RLKE NINKSL+ LG VI+ LA
Sbjct: 214 KIKNSSSGSG--KASKLNLVDLAGSERAKKTGAEGDRLKEAGNINKSLSALGNVINALAQ 271
Query: 392 STSSSKNKDKFVPYRDSVLTWLLKDNLGGNSKTVMVATVSPAADNYEETLSTLRYADRAK 451
+K + +PYRDS LT LL+D+LGGNSKT+M+A VSP++ N EETLSTLR+A RAK
Sbjct: 272 H-----SKSRHIPYRDSKLTRLLQDSLGGNSKTLMIANVSPSSSNLEETLSTLRFASRAK 326
Query: 452 RIVNHAVDN 460
I N + N
Sbjct: 327 EIKNKPIVN 335
Score = 88.0 bits (219), Expect = 5e-19
Identities = 54/169 (31%), Positives = 77/169 (45%), Gaps = 57/169 (33%)
Query: 1 MGSQDNKGIIPRLCDSLFDLIAKQESS----------ELTYNPYIR-------------- 36
+G+ D+ GIIPR LF+ I K+E E+ YN IR
Sbjct: 98 IGTPDSPGIIPRALKDLFEKIDKREEGWQFSVKVSYLEI-YNEKIRDLLNPSSKKLEIRE 156
Query: 37 -------------TPIRKYEMIYSCRVSMLKMIYGLK----ASNS-------THAVFSVV 72
+ +E +Y+ + G K A+ +HAVF++
Sbjct: 157 DEKGGVYVKGLTEISVSSFEEVYNL------LEKGNKNRTVAATKMNEESSRSHAVFTIT 210
Query: 73 LTQTLVDTKSGVEGEKVARLSLVDLAGSERAVKTGAVGERLKEGSNINK 121
+ Q + ++ SG K ++L+LVDLAGSERA KTGA G+RLKE NINK
Sbjct: 211 VEQKIKNSSSGSG--KASKLNLVDLAGSERAKKTGAEGDRLKEAGNINK 257
>gnl|CDD|215803 pfam00225, Kinesin, Kinesin motor domain.
Length = 326
Score = 243 bits (622), Expect = 4e-76
Identities = 104/183 (56%), Positives = 130/183 (71%), Gaps = 14/183 (7%)
Query: 273 DTKSGVEGEKVARLSLVDLAS-EEIDSLMAEGNKSRTVAATNMNSESSRSHAVFSVVLTQ 331
D K GV V L+ V++ S EE+ L+ GNK+RTVA+TNMN ESSRSHA+F++ + Q
Sbjct: 156 DPKKGV---YVKGLTEVEVTSAEEVLELLELGNKNRTVASTNMNEESSRSHAIFTITVEQ 212
Query: 332 TLVDTKSGVEGEKVARLSLVDLAGSERAVKTGAV-GERLKEGSNINKSLTTLGLVISKLA 390
DT V K +L+LVDLAGSERA KTGA G RLKE +NINKSL+ LG VI+ LA
Sbjct: 213 RNRDTDGSV---KTGKLNLVDLAGSERASKTGAAGGRRLKEAANINKSLSALGNVINALA 269
Query: 391 DSTSSSKNKDKFVPYRDSVLTWLLKDNLGGNSKTVMVATVSPAADNYEETLSTLRYADRA 450
+ N+ +PYRDS LT LL+D+LGGNSKT+M+A +SP+ NYEETLSTLR+A RA
Sbjct: 270 E------NQSSHIPYRDSKLTRLLQDSLGGNSKTLMIANISPSDSNYEETLSTLRFASRA 323
Query: 451 KRI 453
K I
Sbjct: 324 KNI 326
Score = 122 bits (309), Expect = 4e-31
Identities = 50/102 (49%), Positives = 71/102 (69%), Gaps = 4/102 (3%)
Query: 194 QVHDLLDPKANKQSLKVREHNVLGPYVDGLSQLAVTSFQEIDSLMAEGNKSRTVAATNMN 253
+++DLL P + K+ L++RE G YV GL+++ VTS +E+ L+ GNK+RTVA+TNMN
Sbjct: 137 KIYDLLSPSSKKKKLRIREDPKKGVYVKGLTEVEVTSAEEVLELLELGNKNRTVASTNMN 196
Query: 254 SESSRSHAVFSVVLTQTLVDTKSGVEGEKVARLSLVDLA-SE 294
ESSRSHA+F++ + Q DT V K +L+LVDLA SE
Sbjct: 197 EESSRSHAIFTITVEQRNRDTDGSV---KTGKLNLVDLAGSE 235
Score = 76.1 bits (188), Expect = 5e-15
Identities = 47/168 (27%), Positives = 67/168 (39%), Gaps = 60/168 (35%)
Query: 5 DNKGIIPRLCDSLFDLIAKQESSELT----------YNPYIR------------------ 36
+ GIIPR + LF+ I +++ + + YN I
Sbjct: 98 EEPGIIPRALEDLFERIEERKERKWSFSVRVSYLEIYNEKIYDLLSPSSKKKKLRIREDP 157
Query: 37 -----------TPIRKYEMIYSCRVSMLKMIYGLK-----------ASNSTHAVFSVVLT 74
+ E + + G K S+ +HA+F++ +
Sbjct: 158 KKGVYVKGLTEVEVTSAEEVLEL------LELGNKNRTVASTNMNEESSRSHAIFTITVE 211
Query: 75 QTLVDTKSGVEGEKVARLSLVDLAGSERAVKTGAV-GERLKEGSNINK 121
Q DT V K +L+LVDLAGSERA KTGA G RLKE +NINK
Sbjct: 212 QRNRDTDGSV---KTGKLNLVDLAGSERASKTGAAGGRRLKEAANINK 256
>gnl|CDD|238054 cd00106, KISc, Kinesin motor domain. This catalytic (head) domain
has ATPase activity and belongs to the larger group of
P-loop NTPases. Kinesins are microtubule-dependent
molecular motors that play important roles in
intracellular transport and in cell division. In most
kinesins, the motor domain is found at the N-terminus
(N-type), in some its is found in the middle (M-type),
or C-terminal (C-type). N-type and M-type kinesins are
(+) end-directed motors, while C-type kinesins are (-)
end-directed motors, i.e. they transport cargo towards
the (-) end of the microtubule. Kinesin motor domains
hydrolyze ATP at a rate of about 80 per second, and move
along the microtubule at a speed of about 6400 Angstroms
per second. To achieve that, kinesin head groups work in
pairs. Upon replacing ADP with ATP, a kinesin motor
domain increases its affinity for microtubule binding
and locks in place. Also, the neck linker binds to the
motor domain, which repositions the other head domain
through the coiled-coil domain close to a second tubulin
dimer, about 80 Angstroms along the microtubule.
Meanwhile, ATP hydrolysis takes place, and when the
second head domain binds to the microtubule, the first
domain again replaces ADP with ATP, triggering a
conformational change that pulls the first domain
forward.
Length = 328
Score = 230 bits (588), Expect = 5e-71
Identities = 94/177 (53%), Positives = 125/177 (70%), Gaps = 8/177 (4%)
Query: 276 SGVEGEKVARLSLVDLAS-EEIDSLMAEGNKSRTVAATNMNSESSRSHAVFSVVLTQTLV 334
G V L+ V++ S E+ SL+ +G K+RT A+T MN SSRSHA+F++ + Q
Sbjct: 159 DPKGGVYVKGLTEVEVGSAEDALSLLQKGLKNRTTASTAMNERSSRSHAIFTIHVEQ--R 216
Query: 335 DTKSGVEGEKVARLSLVDLAGSERAVKTGAVGERLKEGSNINKSLTTLGLVISKLADSTS 394
+T + K ++L+LVDLAGSERA KTGA G+RLKE NINKSL+ LG VIS L+
Sbjct: 217 NTTNDGRSIKSSKLNLVDLAGSERAKKTGAEGDRLKEAKNINKSLSALGNVISALSS--- 273
Query: 395 SSKNKDKFVPYRDSVLTWLLKDNLGGNSKTVMVATVSPAADNYEETLSTLRYADRAK 451
K K +PYRDS LT LL+D+LGGNSKT+M+A +SP+++NY+ETLSTLR+A RAK
Sbjct: 274 --GQKKKHIPYRDSKLTRLLQDSLGGNSKTLMIANISPSSENYDETLSTLRFASRAK 328
Score = 116 bits (294), Expect = 5e-29
Identities = 52/149 (34%), Positives = 82/149 (55%), Gaps = 11/149 (7%)
Query: 175 NDIQLSGNLKINFGLFFCF------QVHDLLDPKANKQSLKVREHNVLGPYVDGLSQLAV 228
N I +F + + +V+DLL P+ + L +RE G YV GL+++ V
Sbjct: 115 NLIDERKEKNKSFSVSVSYLEIYNEKVYDLLSPEPPSKPLSLREDPKGGVYVKGLTEVEV 174
Query: 229 TSFQEIDSLMAEGNKSRTVAATNMNSESSRSHAVFSVVLTQTLVDTKSGVEGEKVARLSL 288
S ++ SL+ +G K+RT A+T MN SSRSHA+F++ + Q +T + K ++L+L
Sbjct: 175 GSAEDALSLLQKGLKNRTTASTAMNERSSRSHAIFTIHVEQ--RNTTNDGRSIKSSKLNL 232
Query: 289 VDLA-SEEIDSLMAEGNKSRTVAATNMNS 316
VDLA SE AEG++ + A N+N
Sbjct: 233 VDLAGSERAKKTGAEGDRLK--EAKNINK 259
Score = 85.0 bits (211), Expect = 5e-18
Identities = 46/165 (27%), Positives = 68/165 (41%), Gaps = 46/165 (27%)
Query: 1 MGSQDNKGIIPRLCDSLFDLIAKQESSELT----------YNPYIR----TPIRKYEMIY 46
GS + GIIPR + LF+LI +++ + YN + +
Sbjct: 97 FGSPKDPGIIPRALEDLFNLIDERKEKNKSFSVSVSYLEIYNEKVYDLLSPEPPSKPLSL 156
Query: 47 SCRVSMLKMIYGLK------------------------------ASNSTHAVFSVVLTQT 76
+ GL S+ +HA+F++ + Q
Sbjct: 157 REDPKGGVYVKGLTEVEVGSAEDALSLLQKGLKNRTTASTAMNERSSRSHAIFTIHVEQ- 215
Query: 77 LVDTKSGVEGEKVARLSLVDLAGSERAVKTGAVGERLKEGSNINK 121
+T + K ++L+LVDLAGSERA KTGA G+RLKE NINK
Sbjct: 216 -RNTTNDGRSIKSSKLNLVDLAGSERAKKTGAEGDRLKEAKNINK 259
>gnl|CDD|238667 cd01371, KISc_KIF3, Kinesin motor domain, kinesins II or KIF3_like
proteins. Subgroup of kinesins, which form heterotrimers
composed of 2 kinesins and one non-motor accessory
subunit. Kinesins II play important roles in ciliary
transport, and have been implicated in neuronal
transport, melanosome transport, the secretory pathway,
and mitosis. This catalytic (head) domain has ATPase
activity and belongs to the larger group of P-loop
NTPases. Kinesins are microtubule-dependent molecular
motors that play important roles in intracellular
transport and in cell division. In this group the motor
domain is found at the N-terminus (N-type). N-type
kinesins are (+) end-directed motors, i.e. they
transport cargo towards the (+) end of the microtubule.
Kinesin motor domains hydrolyze ATP at a rate of about
80 per second, and move along the microtubule at a speed
of about 6400 Angstroms per second. To achieve that,
kinesin head groups work in pairs. Upon replacing ADP
with ATP, a kinesin motor domain increases its affinity
for microtubule binding and locks in place. Also, the
neck linker binds to the motor domain, which repositions
the other head domain through the coiled-coil domain
close to a second tubulin dimer, about 80 Angstroms
along the microtubule. Meanwhile, ATP hydrolysis takes
place, and when the second head domain binds to the
microtubule, the first domain again replaces ADP with
ATP, triggering a conformational change that pulls the
first domain forward.
Length = 333
Score = 216 bits (552), Expect = 1e-65
Identities = 91/162 (56%), Positives = 117/162 (72%), Gaps = 11/162 (6%)
Query: 294 EEIDSLMAEGNKSRTVAATNMNSESSRSHAVFSVVL--TQTLVDTKSGVEGEKVARLSLV 351
EE+D LM GNK+R+V ATNMN +SSRSH++F++ + ++ D ++ + +V +L+LV
Sbjct: 181 EEMDKLMTLGNKNRSVGATNMNEDSSRSHSIFTITIECSEKGEDGENHI---RVGKLNLV 237
Query: 352 DLAGSERAVKTGAVGERLKEGSNINKSLTTLGLVISKLADSTSSSKNKDKFVPYRDSVLT 411
DLAGSER KTGA G+RLKE + IN SL+ LG VIS L D K +PYRDS LT
Sbjct: 238 DLAGSERQSKTGATGDRLKEATKINLSLSALGNVISALVDG------KSTHIPYRDSKLT 291
Query: 412 WLLKDNLGGNSKTVMVATVSPAADNYEETLSTLRYADRAKRI 453
LL+D+LGGNSKTVM A + PA NY+ETLSTLRYA+RAK I
Sbjct: 292 RLLQDSLGGNSKTVMCANIGPADYNYDETLSTLRYANRAKNI 333
Score = 98.6 bits (246), Expect = 1e-22
Identities = 69/195 (35%), Positives = 102/195 (52%), Gaps = 20/195 (10%)
Query: 194 QVHDLLDPKANKQSLKVREHNVLGPYVDGLSQLAVTSFQEIDSLMAEGNKSRTVAATNMN 253
+V DLL K K+ L+++E G YV LS V + +E+D LM GNK+R+V ATNMN
Sbjct: 144 EVRDLLG-KDQKKKLELKERPDRGVYVKDLSMFVVKNAEEMDKLMTLGNKNRSVGATNMN 202
Query: 254 SESSRSHAVFSVVL--TQTLVDTKSGVEGEKVARLSLVDLA-SEEIDSLMAEGNKSRTVA 310
+SSRSH++F++ + ++ D ++ + +V +L+LVDLA SE A G R
Sbjct: 203 EDSSRSHSIFTITIECSEKGEDGENHI---RVGKLNLVDLAGSERQSKTGATG--DRLKE 257
Query: 311 ATNMNSESSRSHAVFSVVLTQTLVDTKSG---VEGEKVARLSLVDLAGSERAVKTGAVGE 367
AT +N S V S LVD KS K+ RL L G+ + V +G
Sbjct: 258 ATKINLSLSALGNVIS-----ALVDGKSTHIPYRDSKLTRLLQDSLGGNSKTVMCANIG- 311
Query: 368 RLKEGSNINKSLTTL 382
N +++L+TL
Sbjct: 312 --PADYNYDETLSTL 324
Score = 62.8 bits (153), Expect = 9e-11
Identities = 26/63 (41%), Positives = 44/63 (69%), Gaps = 5/63 (7%)
Query: 60 KASNSTHAVFSVVL--TQTLVDTKSGVEGEKVARLSLVDLAGSERAVKTGAVGERLKEGS 117
+ S+ +H++F++ + ++ D ++ + +V +L+LVDLAGSER KTGA G+RLKE +
Sbjct: 203 EDSSRSHSIFTITIECSEKGEDGENHI---RVGKLNLVDLAGSERQSKTGATGDRLKEAT 259
Query: 118 NIN 120
IN
Sbjct: 260 KIN 262
>gnl|CDD|238662 cd01366, KISc_C_terminal, Kinesin motor domain,
KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a
spindle motor protein necessary for chromosome
segregation in meiosis. KIFC2/KIFC3-like kinesins have
been implicated in motility of the Golgi apparatus as
well as dentritic and axonal transport in neurons. This
catalytic (head) domain has ATPase activity and belongs
to the larger group of P-loop NTPases. Kinesins are
microtubule-dependent molecular motors that play
important roles in intracellular transport and in cell
division. In this subgroup the motor domain is found at
the C-terminus (C-type). C-type kinesins are (-)
end-directed motors, i.e. they transport cargo towards
the (-) end of the microtubule. Kinesin motor domains
hydrolyze ATP at a rate of about 80 per second, and move
along the microtubule at a speed of about 6400 Angstroms
per second. To achieve that, kinesin head groups work in
pairs. Upon replacing ADP with ATP, a kinesin motor
domain increases its affinity for microtubule binding
and locks in place. Also, the neck linker binds to the
motor domain, which repositions the other head domain
through the coiled-coil domain close to a second tubulin
dimer, about 80 Angstroms along the microtubule.
Meanwhile, ATP hydrolysis takes place, and when the
second head domain binds to the microtubule, the first
domain again replaces ADP with ATP, triggering a
conformational change that pulls the first domain
forward.
Length = 329
Score = 211 bits (539), Expect = 7e-64
Identities = 86/174 (49%), Positives = 114/174 (65%), Gaps = 12/174 (6%)
Query: 283 VARLSLVDLAS-EEIDSLMAEGNKSRTVAATNMNSESSRSHAVFSVVLTQTLVDTKSGVE 341
V L+ V ++S EE+ L+ G+K+R+VA+TNMN SSRSHAVF + + T + T
Sbjct: 166 VTNLTEVPVSSPEEVTRLLNLGSKNRSVASTNMNEHSSRSHAVFQLKIRGTNLQTGEQTR 225
Query: 342 GEKVARLSLVDLAGSERAVKTGAVGERLKEGSNINKSLTTLGLVISKLADSTSSSKNKDK 401
G +L+LVDLAGSER K+GA G+RLKE INKSL+ LG VIS L +KD
Sbjct: 226 G----KLNLVDLAGSERLKKSGATGDRLKEAQAINKSLSALGDVISALR-------SKDS 274
Query: 402 FVPYRDSVLTWLLKDNLGGNSKTVMVATVSPAADNYEETLSTLRYADRAKRIVN 455
VPYR+S LT+LL+D+LGGNSKT+M +SP N ETL +LR+A R + +
Sbjct: 275 HVPYRNSKLTYLLQDSLGGNSKTLMFVNISPLESNLSETLCSLRFASRVRSVEL 328
Score = 69.9 bits (172), Expect = 4e-13
Identities = 51/168 (30%), Positives = 65/168 (38%), Gaps = 53/168 (31%)
Query: 1 MGSQDNKGIIPRLCDSLFDLIAKQESSELT------------YNPYIR-------TPIRK 41
G +N GIIPR + LF+ +E E YN IR P +K
Sbjct: 96 EGPPENPGIIPRALEQLFNTA--EELKEKGWSYTITASMLEIYNETIRDLLATKPAPKKK 153
Query: 42 YE-------MIY-----SCRVSMLKMIYGL------------KASNST----HAVFSVVL 73
E Y VS + + L N HAVF + +
Sbjct: 154 LEIKHDSKGETYVTNLTEVPVSSPEEVTRLLNLGSKNRSVASTNMNEHSSRSHAVFQLKI 213
Query: 74 TQTLVDTKSGVEGEKVARLSLVDLAGSERAVKTGAVGERLKEGSNINK 121
T + T G +L+LVDLAGSER K+GA G+RLKE INK
Sbjct: 214 RGTNLQTGEQTRG----KLNLVDLAGSERLKKSGATGDRLKEAQAINK 257
>gnl|CDD|238666 cd01370, KISc_KIP3_like, Kinesin motor domain, KIP3-like subgroup.
The yeast kinesin KIP3 plays a role in positioning the
mitotic spindle. This catalytic (head) domain has ATPase
activity and belongs to the larger group of P-loop
NTPases. Kinesins are microtubule-dependent molecular
motors that play important roles in intracellular
transport and in cell division. In most kinesins, the
motor domain is found at the N-terminus (N-type). N-type
kinesins are (+) end-directed motors, i.e. they
transport cargo towards the (+) end of the microtubule.
Kinesin motor domains hydrolyze ATP at a rate of about
80 per second, and move along the microtubule at a speed
of about 6400 Angstroms per second. To achieve that,
kinesin head groups work in pairs. Upon replacing ADP
with ATP, a kinesin motor domain increases its affinity
for microtubule binding and locks in place. Also, the
neck linker binds to the motor domain, which repositions
the other head domain through the coiled-coil domain
close to a second tubulin dimer, about 80 Angstroms
along the microtubule. Meanwhile, ATP hydrolysis takes
place, and when the second head domain binds to the
microtubule, the first domain again replaces ADP with
ATP, triggering a conformational change that pulls the
first domain forward.
Length = 338
Score = 208 bits (532), Expect = 1e-62
Identities = 91/182 (50%), Positives = 120/182 (65%), Gaps = 9/182 (4%)
Query: 273 DTKSGVEGEKVARLSLVDLAS-EEIDSLMAEGNKSRTVAATNMNSESSRSHAVFSVVLTQ 331
D G+ VA L+ S EEI L+ +GN++RT T N+ SSRSHAV + + Q
Sbjct: 165 DPNQGI---VVAGLTEHQPKSAEEILELLMKGNRNRTQEPTEANATSSRSHAVLQITVRQ 221
Query: 332 TLVDTKSGVEGEKVARLSLVDLAGSERAVKTGAVGERLKEGSNINKSLTTLGLVISKLAD 391
T S + ++ +LSL+DLAGSERA T G+RLKEG+NIN+SL LG I+ L D
Sbjct: 222 K-DRTASINQQVRIGKLSLIDLAGSERASATNNRGQRLKEGANINRSLLALGNCINALVD 280
Query: 392 STSSSKNKDKFVPYRDSVLTWLLKDNLGGNSKTVMVATVSPAADNYEETLSTLRYADRAK 451
K K+K +PYRDS LT LLKD+LGGN KTVM+A +SP++ +YEET +TL+YA+RAK
Sbjct: 281 G----KKKNKHIPYRDSKLTRLLKDSLGGNCKTVMIANISPSSSHYEETHNTLKYANRAK 336
Query: 452 RI 453
I
Sbjct: 337 NI 338
Score = 71.5 bits (176), Expect = 2e-13
Identities = 28/62 (45%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 60 KASNSTHAVFSVVLTQTLVDTKSGVEGEKVARLSLVDLAGSERAVKTGAVGERLKEGSNI 119
S+ +HAV + + Q T S + ++ +LSL+DLAGSERA T G+RLKEG+NI
Sbjct: 206 ATSSRSHAVLQITVRQK-DRTASINQQVRIGKLSLIDLAGSERASATNNRGQRLKEGANI 264
Query: 120 NK 121
N+
Sbjct: 265 NR 266
>gnl|CDD|238668 cd01372, KISc_KIF4, Kinesin motor domain, KIF4-like subfamily.
Members of this group seem to perform a variety of
functions, and have been implicated in neuronal
organelle transport and chromosome segregation during
mitosis. This catalytic (head) domain has ATPase
activity and belongs to the larger group of P-loop
NTPases. Kinesins are microtubule-dependent molecular
motors that play important roles in intracellular
transport and in cell division. In most kinesins, the
motor domain is found at the N-terminus (N-type). N-type
kinesins are (+) end-directed motors, i.e. they
transport cargo towards the (+) end of the microtubule.
Kinesin motor domains hydrolyze ATP at a rate of about
80 per second, and move along the microtubule at a speed
of about 6400 Angstroms per second. To achieve that,
kinesin head groups work in pairs. Upon replacing ADP
with ATP, a kinesin motor domain increases its affinity
for microtubule binding and locks in place. Also, the
neck linker binds to the motor domain, which repositions
the other head domain through the coiled-coil domain
close to a second tubulin dimer, about 80 Angstroms
along the microtubule. Meanwhile, ATP hydrolysis takes
place, and when the second head domain binds to the
microtubule, the first domain again replaces ADP with
ATP, triggering a conformational change that pulls the
first domain forward.
Length = 341
Score = 201 bits (514), Expect = 4e-60
Identities = 101/261 (38%), Positives = 140/261 (53%), Gaps = 61/261 (23%)
Query: 194 QVHDLLDPKANKQS-LKVREHNVLGPYVDGLSQLAVTSFQEIDSLMAEGNKSRTVAATNM 252
+V DLL P +++S +++RE + + GL+++ V S QE+ S + +G+ SRT A+T M
Sbjct: 140 EVRDLLSPSTSEKSPIQIREDSKGNIIIVGLTEVTVNSAQEVMSCLEQGSLSRTTASTAM 199
Query: 253 NSESSRSHAVFSVVLTQTLVDTKSGVEGEKVARLSLVDLASEEIDSLMAEGNKSRTVAAT 312
NS+SSRSHA+F++ TL T+ M+ +K+ T+
Sbjct: 200 NSQSSRSHAIFTI----TLEQTRKNGPIA-----------------PMSGDDKNSTL--- 235
Query: 313 NMNSESSRSHAVFSVVLTQTLVDTKSGVEGEKVARLSLVDLAGSERAVKTGAVGERLKEG 372
++ VDLAGSER KTGA G+RLKEG
Sbjct: 236 --------------------------------TSKFHFVDLAGSERLKKTGATGDRLKEG 263
Query: 373 SNINKSLTTLGLVISKLADSTSSSKNKDKFVPYRDSVLTWLLKDNLGGNSKTVMVATVSP 432
+IN L LG VIS L D K VPYRDS LT LL+D+LGGNS T+M+A VSP
Sbjct: 264 ISINSGLLALGNVISALGDE----SKKGSHVPYRDSKLTRLLQDSLGGNSHTLMIACVSP 319
Query: 433 AADNYEETLSTLRYADRAKRI 453
A N+EETL+TL+YA+RA+ I
Sbjct: 320 ADSNFEETLNTLKYANRARNI 340
Score = 71.6 bits (176), Expect = 1e-13
Identities = 43/167 (25%), Positives = 63/167 (37%), Gaps = 50/167 (29%)
Query: 5 DNKGIIPRLCDSLFDLIAKQESSELT---------YNPYIR----------TPIRKYEMI 45
+ GIIPR +F I +++ YN +R +PI+ E
Sbjct: 102 EEVGIIPRAIQHIFKKIDEKKDEPDFQLKVSFLELYNEEVRDLLSPSTSEKSPIQIREDS 161
Query: 46 ----------------YSCRVSMLKMIYGLKASNST---------HAVFSVVLTQTLVDT 80
+S L+ + + ST HA+F++ L QT +
Sbjct: 162 KGNIIIVGLTEVTVNSAQEVMSCLEQGSLSRTTASTAMNSQSSRSHAIFTITLEQTRKNG 221
Query: 81 KSGVEGEK------VARLSLVDLAGSERAVKTGAVGERLKEGSNINK 121
++ VDLAGSER KTGA G+RLKEG +IN
Sbjct: 222 PIAPMSGDDKNSTLTSKFHFVDLAGSERLKKTGATGDRLKEGISINS 268
>gnl|CDD|238665 cd01369, KISc_KHC_KIF5, Kinesin motor domain, kinesin heavy chain
(KHC) or KIF5-like subgroup. Members of this group have
been associated with organelle transport. This catalytic
(head) domain has ATPase activity and belongs to the
larger group of P-loop NTPases. Kinesins are
microtubule-dependent molecular motors that play
important roles in intracellular transport and in cell
division. In most kinesins, the motor domain is found at
the N-terminus (N-type). N-type kinesins are (+)
end-directed motors, i.e. they transport cargo towards
the (+) end of the microtubule. Kinesin motor domains
hydrolyze ATP at a rate of about 80 per second, and move
along the microtubule at a speed of about 6400 Angstroms
per second. To achieve that, kinesin head groups work in
pairs. Upon replacing ADP with ATP, a kinesin motor
domain increases its affinity for microtubule binding
and locks in place. Also, the neck linker binds to the
motor domain, which repositions the other head domain
through the coiled-coil domain close to a second tubulin
dimer, about 80 Angstroms along the microtubule.
Meanwhile, ATP hydrolysis takes place, and when the
second head domain binds to the microtubule, the first
domain again replaces ADP with ATP, triggering a
conformational change that pulls the first domain
forward.
Length = 325
Score = 187 bits (477), Expect = 8e-55
Identities = 81/161 (50%), Positives = 108/161 (67%), Gaps = 10/161 (6%)
Query: 293 SEEIDSLMAEGNKSRTVAATNMNSESSRSHAVFSVVLTQTLVDTKSGVEGEKVARLSLVD 352
EE+ ++ EG +R VA+TNMN ESSRSH++F + L Q V+T S +K +L LVD
Sbjct: 175 PEEVLEVINEGKSNRAVASTNMNEESSRSHSIFLITLKQENVETGS----KKRGKLFLVD 230
Query: 353 LAGSERAVKTGAVGERLKEGSNINKSLTTLGLVISKLADSTSSSKNKDKFVPYRDSVLTW 412
LAGSE+ KTGA G+ L+E INKSL+ LG VI+ L D S+ +PYRDS LT
Sbjct: 231 LAGSEKVSKTGAEGQTLEEAKKINKSLSALGNVINALTDGKST------HIPYRDSKLTR 284
Query: 413 LLKDNLGGNSKTVMVATVSPAADNYEETLSTLRYADRAKRI 453
+L+D+LGGNS+T ++ SP++ N ETLSTLR+ RAK I
Sbjct: 285 ILQDSLGGNSRTTLIICCSPSSYNESETLSTLRFGARAKTI 325
Score = 105 bits (263), Expect = 8e-25
Identities = 49/111 (44%), Positives = 70/111 (63%), Gaps = 7/111 (6%)
Query: 194 QVHDLLDPKANKQSLKVREHNVLGPYVDGLSQLAVTSFQEIDSLMAEGNKSRTVAATNMN 253
++ DLLD K +L+V E G YV GL++ V+S +E+ ++ EG +R VA+TNMN
Sbjct: 140 KIRDLLDVS--KDNLQVHEDKNRGVYVKGLTERFVSSPEEVLEVINEGKSNRAVASTNMN 197
Query: 254 SESSRSHAVFSVVLTQTLVDTKSGVEGEKVARLSLVDLA-SEEIDSLMAEG 303
ESSRSH++F + L Q V+T S +K +L LVDLA SE++ AEG
Sbjct: 198 EESSRSHSIFLITLKQENVETGS----KKRGKLFLVDLAGSEKVSKTGAEG 244
Score = 63.5 bits (155), Expect = 7e-11
Identities = 51/184 (27%), Positives = 75/184 (40%), Gaps = 55/184 (29%)
Query: 1 MGSQDNKGIIPRLCDSLFDLIAK-QESSELT--------YNPYIRT---------PIR-- 40
G + KGIIPR+ +F+ I+ E+ E Y IR +
Sbjct: 98 PGDPELKGIIPRIVHDIFEHISSMDENLEFHVKVSYLEIYMEKIRDLLDVSKDNLQVHED 157
Query: 41 KYEMIYSCRVSMLKMIY-------------GLK-----------ASNSTHAVFSVVLTQT 76
K +Y V L + G S+ +H++F + L Q
Sbjct: 158 KNRGVY---VKGLTERFVSSPEEVLEVINEGKSNRAVASTNMNEESSRSHSIFLITLKQE 214
Query: 77 LVDTKSGVEGEKVARLSLVDLAGSERAVKTGAVGERLKEGSNINKQEALESMG--ISVQA 134
V+T S +K +L LVDLAGSE+ KTGA G+ L+E INK +L ++G I+
Sbjct: 215 NVETGS----KKRGKLFLVDLAGSEKVSKTGAEGQTLEEAKKINK--SLSALGNVINALT 268
Query: 135 SGIK 138
G
Sbjct: 269 DGKS 272
>gnl|CDD|238670 cd01374, KISc_CENP_E, Kinesin motor domain, CENP-E/KIP2-like
subgroup, involved in chromosome movement and/or spindle
elongation during mitosis. This catalytic (head) domain
has ATPase activity and belongs to the larger group of
P-loop NTPases. Kinesins are microtubule-dependent
molecular motors that play important roles in
intracellular transport and in cell division. In most
kinesins, the motor domain is found at the N-terminus
(N-type). N-type kinesins are (+) end-directed motors,
i.e. they transport cargo towards the (+) end of the
microtubule. Kinesin motor domains hydrolyze ATP at a
rate of about 80 per second, and move along the
microtubule at a speed of about 6400 Angstroms per
second. To achieve that, kinesin head groups work in
pairs. Upon replacing ADP with ATP, a kinesin motor
domain increases its affinity for microtubule binding
and locks in place. Also, the neck linker binds to the
motor domain, which repositions the other head domain
through the coiled-coil domain close to a second tubulin
dimer, about 80 Angstroms along the microtubule.
Meanwhile, ATP hydrolysis takes place, and when the
second head domain binds to the microtubule, the first
domain again replaces ADP with ATP, triggering a
conformational change that pulls the first domain
forward.
Length = 321
Score = 186 bits (475), Expect = 1e-54
Identities = 77/161 (47%), Positives = 105/161 (65%), Gaps = 7/161 (4%)
Query: 293 SEEIDSLMAEGNKSRTVAATNMNSESSRSHAVFSVVLTQTLVDTKSGVEGEKVARLSLVD 352
E + L+A G K+R V T+ N SSRSH +F + + S +V+ L+L+D
Sbjct: 168 PEHLLQLIARGEKNRHVGETDFNERSSRSHTIFQLTIESRERGD-SESGTVRVSTLNLID 226
Query: 353 LAGSERAVKTGAVGERLKEGSNINKSLTTLGLVISKLADSTSSSKNKDKFVPYRDSVLTW 412
LAGSERA +TGA GER KEGS INKSL TLG VISKL S +PYRDS LT
Sbjct: 227 LAGSERASQTGA-GERRKEGSFINKSLLTLGTVISKL-----SEGKNSGHIPYRDSKLTR 280
Query: 413 LLKDNLGGNSKTVMVATVSPAADNYEETLSTLRYADRAKRI 453
+L+ +L GN++T ++ T+SPA+ + EETL+TL++A RAK++
Sbjct: 281 ILQPSLSGNARTAIICTISPASSHVEETLNTLKFASRAKKV 321
Score = 83.9 bits (208), Expect = 1e-17
Identities = 44/121 (36%), Positives = 62/121 (51%), Gaps = 12/121 (9%)
Query: 195 VHDLLDPKANKQSLKVREHNVLGPYVDGLSQLAVTSFQEIDSLMAEGNKSRTVAATNMNS 254
+ DLL P + Q L++RE G V GL++ VTS + + L+A G K+R V T+ N
Sbjct: 134 IKDLLSP--SPQELRIREDPNKGVVVAGLTEEIVTSPEHLLQLIARGEKNRHVGETDFNE 191
Query: 255 ESSRSHAVFSVVLTQTLVDTKSGVEGEKVARLSLVDLA-SEEIDSLMA-----EG---NK 305
SSRSH +F + + S +V+ L+L+DLA SE A EG NK
Sbjct: 192 RSSRSHTIFQLTIESRERGD-SESGTVRVSTLNLIDLAGSERASQTGAGERRKEGSFINK 250
Query: 306 S 306
S
Sbjct: 251 S 251
Score = 65.0 bits (159), Expect = 2e-11
Identities = 28/60 (46%), Positives = 38/60 (63%), Gaps = 2/60 (3%)
Query: 62 SNSTHAVFSVVLTQTLVDTKSGVEGEKVARLSLVDLAGSERAVKTGAVGERLKEGSNINK 121
S+ +H +F + + S +V+ L+L+DLAGSERA +TGA GER KEGS INK
Sbjct: 193 SSRSHTIFQLTIESRERGD-SESGTVRVSTLNLIDLAGSERASQTGA-GERRKEGSFINK 250
>gnl|CDD|238660 cd01364, KISc_BimC_Eg5, Kinesin motor domain, BimC/Eg5 spindle pole
proteins, participate in spindle assembly and chromosome
segregation during cell division. This catalytic (head)
domain has ATPase activity and belongs to the larger
group of P-loop NTPases. Kinesins are
microtubule-dependent molecular motors that play
important roles in intracellular transport and in cell
division. In most kinesins, the motor domain is found at
the N-terminus (N-type), N-type kinesins are (+)
end-directed motors, i.e. they transport cargo towards
the (+) end of the microtubule. Kinesin motor domains
hydrolyze ATP at a rate of about 80 per second, and move
along the microtubule at a speed of about 6400 Angstroms
per second. To achieve that, kinesin head groups work in
pairs. Upon replacing ADP with ATP, a kinesin motor
domain increases its affinity for microtubule binding
and locks in place. Also, the neck linker binds to the
motor domain, which repositions the other head domain
through the coiled-coil domain close to a second tubulin
dimer, about 80 Angstroms along the microtubule.
Meanwhile, ATP hydrolysis takes place, and when the
second head domain binds to the microtubule, the first
domain again replaces ADP with ATP, triggering a
conformational change that pulls the first domain
forward.
Length = 352
Score = 176 bits (448), Expect = 2e-50
Identities = 79/164 (48%), Positives = 109/164 (66%), Gaps = 14/164 (8%)
Query: 295 EIDSLMAEGNKSRTVAATNMNSESSRSHAVFSVVLTQTLVDTKSGVEGE---KVARLSLV 351
E L+ +G+ R AAT MN +SSRSH++FS+ T+ ++ + GE K+ +L+LV
Sbjct: 193 EGLKLLEKGSAKRKTAATLMNDQSSRSHSIFSI----TIHIKETTISGEELVKIGKLNLV 248
Query: 352 DLAGSERAVKTGAVGERLKEGSNINKSLTTLGLVISKLADSTSSSKNKDKFVPYRDSVLT 411
DLAGSE ++GA +R +E NIN+SL TLG VI+ L + K +PYR+S LT
Sbjct: 249 DLAGSENIGRSGAENKRAREAGNINQSLLTLGRVINALVE-------KSPHIPYRESKLT 301
Query: 412 WLLKDNLGGNSKTVMVATVSPAADNYEETLSTLRYADRAKRIVN 455
LL+D+LGG +KT ++AT+SPA+ N EETLSTL YA RAK I N
Sbjct: 302 RLLQDSLGGRTKTSIIATISPASINLEETLSTLEYAHRAKNIKN 345
Score = 75.8 bits (187), Expect = 7e-15
Identities = 42/133 (31%), Positives = 78/133 (58%), Gaps = 11/133 (8%)
Query: 182 NLKINFGLFFCFQVHDLLDPKAN-KQSLKVRE--HNVLGPYVDGLSQLAVTSFQEIDSLM 238
++K+++ + ++ DLL +++ + L++ + +N G + GL ++ V + E L+
Sbjct: 139 SVKVSYLELYNEELFDLLSSESDLNKPLRIFDDTNNKGGVVIQGLEEITVNNANEGLKLL 198
Query: 239 AEGNKSRTVAATNMNSESSRSHAVFSVVLTQTLVDTKSGVEGE---KVARLSLVDLA-SE 294
+G+ R AAT MN +SSRSH++FS+ T+ ++ + GE K+ +L+LVDLA SE
Sbjct: 199 EKGSAKRKTAATLMNDQSSRSHSIFSI----TIHIKETTISGEELVKIGKLNLVDLAGSE 254
Query: 295 EIDSLMAEGNKSR 307
I AE ++R
Sbjct: 255 NIGRSGAENKRAR 267
Score = 56.1 bits (136), Expect = 2e-08
Identities = 24/65 (36%), Positives = 41/65 (63%), Gaps = 7/65 (10%)
Query: 60 KASNSTHAVFSVVLTQTLVDTKSGVEGE---KVARLSLVDLAGSERAVKTGAVGERLKEG 116
S+ +H++FS+ T+ ++ + GE K+ +L+LVDLAGSE ++GA +R +E
Sbjct: 214 DQSSRSHSIFSI----TIHIKETTISGEELVKIGKLNLVDLAGSENIGRSGAENKRAREA 269
Query: 117 SNINK 121
NIN+
Sbjct: 270 GNINQ 274
>gnl|CDD|238669 cd01373, KISc_KLP2_like, Kinesin motor domain, KLP2-like subgroup.
Members of this subgroup seem to play a role in mitosis
and meiosis. This catalytic (head) domain has ATPase
activity and belongs to the larger group of P-loop
NTPases. Kinesins are microtubule-dependent molecular
motors that play important roles in intracellular
transport and in cell division. In most kinesins, the
motor domain is found at the N-terminus (N-type). N-type
kinesins are (+) end-directed motors, i.e. they
transport cargo towards the (+) end of the microtubule.
Kinesin motor domains hydrolyze ATP at a rate of about
80 per second, and move along the microtubule at a speed
of about 6400 Angstroms per second. To achieve that,
kinesin head groups work in pairs. Upon replacing ADP
with ATP, a kinesin motor domain increases its affinity
for microtubule binding and locks in place. Also, the
neck linker binds to the motor domain, which repositions
the other head domain through the coiled-coil domain
close to a second tubulin dimer, about 80 Angstroms
along the microtubule. Meanwhile, ATP hydrolysis takes
place, and when the second head domain binds to the
microtubule, the first domain again replaces ADP with
ATP, triggering a conformational change that pulls the
first domain forward.
Length = 337
Score = 172 bits (437), Expect = 6e-49
Identities = 100/260 (38%), Positives = 137/260 (52%), Gaps = 69/260 (26%)
Query: 194 QVHDLLDPKANKQSLKVREHNVLGPYVDGLSQLAVTSFQEIDSLMAEGNKSRTVAATNMN 253
Q+ DLLDP ++LK+RE G YV+ L++ V+S++++ ++ +G +R VAAT+MN
Sbjct: 147 QITDLLDP--TSRNLKIREDIKKGVYVENLTEEYVSSYEDVYQVLLKGLSNRKVAATSMN 204
Query: 254 SESSRSHAVFSVVLTQTLVDTKSGVEGEKVARLSLVDLASEEIDSLMAEGNKSRTVAATN 313
SESSRSHAVF+ I+S + S + +
Sbjct: 205 SESSRSHAVFTCT-----------------------------IES-WEKKASSTNIRTSR 234
Query: 314 MNSESSRSHAVFSVVLTQTLVDTKSGVEGEKVARLSLVDLAGSERAVKTGAVGERLKEGS 373
+N LVDLAGSER GA G RLKE
Sbjct: 235 LN----------------------------------LVDLAGSERQKDDGAEGVRLKEAK 260
Query: 374 NINKSLTTLGLVISKLADSTSSSKNKDKFVPYRDSVLTWLLKDNLGGNSKTVMVATVSPA 433
NINKSL+TLG VI L D + K + VPYRDS LT+LL+D+LGGN+KT ++A VSP+
Sbjct: 261 NINKSLSTLGHVIMALVD-VAHGKQRH--VPYRDSKLTFLLRDSLGGNAKTTIIANVSPS 317
Query: 434 ADNYEETLSTLRYADRAKRI 453
+ + ETLSTL++A RAK I
Sbjct: 318 SKCFGETLSTLKFAQRAKLI 337
Score = 58.3 bits (141), Expect = 3e-09
Identities = 28/60 (46%), Positives = 37/60 (61%), Gaps = 2/60 (3%)
Query: 62 SNSTHAVFSVVLTQTLVDTKSGVEGEKVARLSLVDLAGSERAVKTGAVGERLKEGSNINK 121
S+ +HAVF+ + + K+ + +RL+LVDLAGSER GA G RLKE NINK
Sbjct: 207 SSRSHAVFTCTIES--WEKKASSTNIRTSRLNLVDLAGSERQKDDGAEGVRLKEAKNINK 264
>gnl|CDD|227392 COG5059, KIP1, Kinesin-like protein [Cytoskeleton].
Length = 568
Score = 169 bits (429), Expect = 7e-46
Identities = 90/188 (47%), Positives = 125/188 (66%), Gaps = 10/188 (5%)
Query: 279 EGEKVARLSLVDLAS-EEIDSLMAEGNKSRTVAATNMNSESSRSHAVFSVVLTQTLVDTK 337
G KVA L+ ++S EEI L+ +G K+RT A+T +N ESSRSH++F + L +
Sbjct: 170 LGVKVAGLTEKHVSSKEEILDLLRKGEKNRTTASTEINDESSRSHSIFQIELASK--NKV 227
Query: 338 SGVEGEKVARLSLVDLAGSERAVKTGAVGERLKEGSNINKSLTTLGLVISKLADSTSSSK 397
SG ++LSLVDLAGSERA +TG G RLKEG++INKSL TLG VI+ L K
Sbjct: 228 SGTSET--SKLSLVDLAGSERAARTGNRGTRLKEGASINKSLLTLGNVINAL-----GDK 280
Query: 398 NKDKFVPYRDSVLTWLLKDNLGGNSKTVMVATVSPAADNYEETLSTLRYADRAKRIVNHA 457
K +PYR+S LT LL+D+LGGN T ++ T+SP+++++EET++TL++A RAK I N
Sbjct: 281 KKSGHIPYRESKLTRLLQDSLGGNCNTRVICTISPSSNSFEETINTLKFASRAKSIKNKI 340
Query: 458 VDNLGGNS 465
N +S
Sbjct: 341 QVNSSSDS 348
Score = 72.8 bits (179), Expect = 2e-13
Identities = 46/114 (40%), Positives = 70/114 (61%), Gaps = 7/114 (6%)
Query: 195 VHDLLDPKANKQSLKVREHNVLGPYVDGLSQLAVTSFQEIDSLMAEGNKSRTVAATNMNS 254
++DLL P N++SL +RE ++LG V GL++ V+S +EI L+ +G K+RT A+T +N
Sbjct: 151 IYDLLSP--NEESLNIREDSLLGVKVAGLTEKHVSSKEEILDLLRKGEKNRTTASTEIND 208
Query: 255 ESSRSHAVFSVVLTQTLVDTKSGVEGEKVARLSLVDLA-SEEIDSLMAEGNKSR 307
ESSRSH++F + L + SG ++LSLVDLA SE G + +
Sbjct: 209 ESSRSHSIFQIELASK--NKVSGTSET--SKLSLVDLAGSERAARTGNRGTRLK 258
Score = 51.7 bits (124), Expect = 8e-07
Identities = 28/56 (50%), Positives = 37/56 (66%), Gaps = 4/56 (7%)
Query: 66 HAVFSVVLTQTLVDTKSGVEGEKVARLSLVDLAGSERAVKTGAVGERLKEGSNINK 121
H++F + L + SG ++LSLVDLAGSERA +TG G RLKEG++INK
Sbjct: 214 HSIFQIELASK--NKVSGTSET--SKLSLVDLAGSERAARTGNRGTRLKEGASINK 265
Score = 39.7 bits (93), Expect = 0.003
Identities = 56/216 (25%), Positives = 83/216 (38%), Gaps = 20/216 (9%)
Query: 177 IQLSGNLKINFGLFFCFQVHDLLDPKANKQSLKVREHNVLGPYVDGLSQLAVTSFQEIDS 236
S + F L A QSLK + + + +F+
Sbjct: 361 EDRSEIEILVFREQSQLSQSSLSGIFAYMQSLKKETETLKSRIDLIMKSIISGTFERKKL 420
Query: 237 LMAEGNKSRTVAATNMNSESSRSHAVFSVVLTQTLVDTKSGVEGEKVA-RLSLVDLASEE 295
L EG K ++ + E R + + K + R L L S
Sbjct: 421 LKEEGWKYKSTL-QFLRIEIDRLLLLRE-----EELSKKKTKIHKLNKLRHDLSSLLSSI 474
Query: 296 IDSLMA-----EGNKSRTVAATNMNSESSRSHAVFSVVLTQTLVDTKSGVEGEKVARLSL 350
+ + +K R+ A+T +N SSRSH+ F L + K L+
Sbjct: 475 PEETSDRVESEKASKLRSSASTKLNLRSSRSHSKFRDHLNGS-------NSSTKELSLNQ 527
Query: 351 VDLAGSERAVKTGAVGERLKEGSNINKSLTTLGLVI 386
VDLAGSER V +VGE L+E ++NKSL++LG VI
Sbjct: 528 VDLAGSERKVSQ-SVGELLRETQSLNKSLSSLGDVI 562
>gnl|CDD|215621 PLN03188, PLN03188, kinesin-12 family protein; Provisional.
Length = 1320
Score = 162 bits (412), Expect = 2e-42
Identities = 86/188 (45%), Positives = 121/188 (64%), Gaps = 4/188 (2%)
Query: 273 DTKSGVEGEKVARLSLVDLASEEIDSLMAEGNKSRTVAATNMNSESSRSHAVFSVVLTQT 332
D KSGV E + + + +++ L+ +G +R AT++N+ESSRSH+VF+ V+
Sbjct: 258 DVKSGVYVENLTEEYVKTM--KDVTQLLIKGLSNRRTGATSINAESSRSHSVFTCVVESR 315
Query: 333 LVDTKSGVEGEKVARLSLVDLAGSERAVKTGAVGERLKEGSNINKSLTTLGLVISKLADS 392
G+ K +R++LVDLAGSER TGA G+RLKE NIN+SL+ LG +I+ LA+
Sbjct: 316 CKSVADGLSSFKTSRINLVDLAGSERQKLTGAAGDRLKEAGNINRSLSQLGNLINILAE- 374
Query: 393 TSSSKNKDKFVPYRDSVLTWLLKDNLGGNSKTVMVATVSPAADNYEETLSTLRYADRAKR 452
S K + +PYRDS LT+LL+++LGGN+K MV +SP+ ET STLR+A RAK
Sbjct: 375 -ISQTGKQRHIPYRDSRLTFLLQESLGGNAKLAMVCAISPSQSCKSETFSTLRFAQRAKA 433
Query: 453 IVNHAVDN 460
I N AV N
Sbjct: 434 IKNKAVVN 441
Score = 71.5 bits (175), Expect = 6e-13
Identities = 38/102 (37%), Positives = 65/102 (63%), Gaps = 2/102 (1%)
Query: 194 QVHDLLDPKANKQSLKVREHNVLGPYVDGLSQLAVTSFQEIDSLMAEGNKSRTVAATNMN 253
Q+ DLLDP ++++L++RE G YV+ L++ V + +++ L+ +G +R AT++N
Sbjct: 241 QITDLLDP--SQKNLQIREDVKSGVYVENLTEEYVKTMKDVTQLLIKGLSNRRTGATSIN 298
Query: 254 SESSRSHAVFSVVLTQTLVDTKSGVEGEKVARLSLVDLASEE 295
+ESSRSH+VF+ V+ G+ K +R++LVDLA E
Sbjct: 299 AESSRSHSVFTCVVESRCKSVADGLSSFKTSRINLVDLAGSE 340
Score = 61.1 bits (148), Expect = 1e-09
Identities = 28/60 (46%), Positives = 39/60 (65%)
Query: 62 SNSTHAVFSVVLTQTLVDTKSGVEGEKVARLSLVDLAGSERAVKTGAVGERLKEGSNINK 121
S+ +H+VF+ V+ G+ K +R++LVDLAGSER TGA G+RLKE NIN+
Sbjct: 301 SSRSHSVFTCVVESRCKSVADGLSSFKTSRINLVDLAGSERQKLTGAAGDRLKEAGNINR 360
>gnl|CDD|238659 cd01363, Motor_domain, Myosin and Kinesin motor domain. These
ATPases belong to the P-loop NTPase family and provide
the driving force in myosin and kinesin mediated
processes.
Length = 186
Score = 149 bits (378), Expect = 3e-42
Identities = 73/139 (52%), Positives = 93/139 (66%), Gaps = 8/139 (5%)
Query: 294 EEIDSLMAEGNKSRTVAATNMNSESSRSHAVFSVVLTQTLVDTKSGVEGEKVARLSLVDL 353
++ LM +GN +RT AAT MN SSRSH+VF + S E KV +++LVDL
Sbjct: 56 TDVIDLMDKGNANRTTAATAMNEHSSRSHSVFRIHFGGKNALA-SATEQPKVGKINLVDL 114
Query: 354 AGSERAVKTGAVGERLKEGSNINKSLTTLGLVISKLADSTSSSKNKDKFVPYRDSVLTWL 413
AGSER +GA G RL E +NINKSL+TLG VIS LA+ +D VPYR+S LT L
Sbjct: 115 AGSERIDFSGAEGSRLTETANINKSLSTLGNVISALAE-------RDSHVPYRESKLTRL 167
Query: 414 LKDNLGGNSKTVMVATVSP 432
L+D+LGGNS+T+MVA +SP
Sbjct: 168 LQDSLGGNSRTLMVACISP 186
Score = 69.9 bits (171), Expect = 7e-14
Identities = 36/85 (42%), Positives = 48/85 (56%), Gaps = 2/85 (2%)
Query: 232 QEIDSLMAEGNKSRTVAATNMNSESSRSHAVFSVVLTQTLVDTKSGVEGEKVARLSLVDL 291
++ LM +GN +RT AAT MN SSRSH+VF + S E KV +++LVDL
Sbjct: 56 TDVIDLMDKGNANRTTAATAMNEHSSRSHSVFRIHFGGKNALA-SATEQPKVGKINLVDL 114
Query: 292 A-SEEIDSLMAEGNKSRTVAATNMN 315
A SE ID AEG++ A N +
Sbjct: 115 AGSERIDFSGAEGSRLTETANINKS 139
Score = 64.5 bits (157), Expect = 5e-12
Identities = 38/121 (31%), Positives = 56/121 (46%), Gaps = 24/121 (19%)
Query: 1 MGSQDNKGIIPRLCDSLFDLIAKQESSELTYNPYIRTPIRKYEMIYSCRVSMLKMIYGLK 60
G ++ GIIPR + DL+ K ++ T T + ++
Sbjct: 42 EGKREGAGIIPRTVTDVIDLMDKGNANRTTAA----TAMNEH------------------ 79
Query: 61 ASNSTHAVFSVVLTQTLVDTKSGVEGEKVARLSLVDLAGSERAVKTGAVGERLKEGSNIN 120
S+ +H+VF + S E KV +++LVDLAGSER +GA G RL E +NIN
Sbjct: 80 -SSRSHSVFRIHFGGKNALA-SATEQPKVGKINLVDLAGSERIDFSGAEGSRLTETANIN 137
Query: 121 K 121
K
Sbjct: 138 K 138
>gnl|CDD|238664 cd01368, KISc_KIF23_like, Kinesin motor domain, KIF23-like
subgroup. Members of this group may play a role in
mitosis. This catalytic (head) domain has ATPase
activity and belongs to the larger group of P-loop
NTPases. Kinesins are microtubule-dependent molecular
motors that play important roles in intracellular
transport and in cell division. In most kinesins, the
motor domain is found at the N-terminus (N-type). N-type
kinesins are (+) end-directed motors, i.e. they
transport cargo towards the (+) end of the microtubule.
Kinesin motor domains hydrolyze ATP at a rate of about
80 per second, and move along the microtubule at a speed
of about 6400 Angstroms per second. To achieve that,
kinesin head groups work in pairs. Upon replacing ADP
with ATP, a kinesin motor domain increases its affinity
for microtubule binding and locks in place. Also, the
neck linker binds to the motor domain, which repositions
the other head domain through the coiled-coil domain
close to a second tubulin dimer, about 80 Angstroms
along the microtubule. Meanwhile, ATP hydrolysis takes
place, and when the second head domain binds to the
microtubule, the first domain again replaces ADP with
ATP, triggering a conformational change that pulls the
first domain forward.
Length = 345
Score = 150 bits (381), Expect = 7e-41
Identities = 73/163 (44%), Positives = 99/163 (60%), Gaps = 5/163 (3%)
Query: 293 SEEIDSLMAEGNKSRTVAATNMNSESSRSHAVFSVVLTQTLVDTKSGVEGEK----VARL 348
+EE + G K+R VA T +N ESSRSH+VF++ L Q D+ V+ +K V++L
Sbjct: 184 TEEAREVFKRGQKNRRVAGTKLNRESSRSHSVFTIKLVQAPGDSDGDVDQDKDQITVSQL 243
Query: 349 SLVDLAGSERAVKTGAVGERLKEGSNINKSLTTLGLVISKLADSTSSSKNKDKFVPYRDS 408
SLVDLAGSER +T GERLKE NIN SL TLG I L ++ S K VPYRDS
Sbjct: 244 SLVDLAGSERTSRTQNTGERLKEAGNINTSLMTLGKCIEVLRENQLSGSTN-KMVPYRDS 302
Query: 409 VLTWLLKDNLGGNSKTVMVATVSPAADNYEETLSTLRYADRAK 451
LT L ++ G K M+ V+P A +Y+ETL ++++ A+
Sbjct: 303 KLTHLFQNYFDGEGKARMIVNVNPCASDYDETLHVMKFSAIAQ 345
Score = 83.6 bits (207), Expect = 2e-17
Identities = 49/131 (37%), Positives = 75/131 (57%), Gaps = 11/131 (8%)
Query: 194 QVHDLLDP----KANKQSLKVREHNVLGPYVDGLSQLAVTSFQEIDSLMAEGNKSRTVAA 249
++DLL+ +QSL++RE + YV GL+++ V+S +E + G K+R VA
Sbjct: 143 YIYDLLEDSPSSTKKRQSLRLREDHNGNMYVAGLTEVEVSSTEEAREVFKRGQKNRRVAG 202
Query: 250 TNMNSESSRSHAVFSVVLTQTLVDTKSGVEGEK----VARLSLVDLA-SEEIDSLMAEGN 304
T +N ESSRSH+VF++ L Q D+ V+ +K V++LSLVDLA SE G
Sbjct: 203 TKLNRESSRSHSVFTIKLVQAPGDSDGDVDQDKDQITVSQLSLVDLAGSERTSRTQNTGE 262
Query: 305 KSRTVAATNMN 315
+ + A N+N
Sbjct: 263 RLK--EAGNIN 271
Score = 67.0 bits (164), Expect = 6e-12
Identities = 31/66 (46%), Positives = 43/66 (65%), Gaps = 4/66 (6%)
Query: 60 KASNSTHAVFSVVLTQTLVDTKSGVEGEK----VARLSLVDLAGSERAVKTGAVGERLKE 115
+ S+ +H+VF++ L Q D+ V+ +K V++LSLVDLAGSER +T GERLKE
Sbjct: 207 RESSRSHSVFTIKLVQAPGDSDGDVDQDKDQITVSQLSLVDLAGSERTSRTQNTGERLKE 266
Query: 116 GSNINK 121
NIN
Sbjct: 267 AGNINT 272
>gnl|CDD|238663 cd01367, KISc_KIF2_like, Kinesin motor domain, KIF2-like group.
KIF2 is a protein expressed in neurons, which has been
associated with axonal transport and neuron development;
alternative splice forms have been implicated in
lysosomal translocation. This catalytic (head) domain
has ATPase activity and belongs to the larger group of
P-loop NTPases. Kinesins are microtubule-dependent
molecular motors that play important roles in
intracellular transport and in cell division. In this
subgroup the motor domain is found in the middle
(M-type) of the protein chain. M-type kinesins are (+)
end-directed motors, i.e. they transport cargo towards
the (+) end of the microtubule. Kinesin motor domains
hydrolyze ATP at a rate of about 80 per second, and move
along the microtubule at a speed of about 6400 Angstroms
per second (KIF2 may be slower). To achieve that,
kinesin head groups work in pairs. Upon replacing ADP
with ATP, a kinesin motor domain increases its affinity
for microtubule binding and locks in place. Also, the
neck linker binds to the motor domain, which repositions
the other head domain through the coiled-coil domain
close to a second tubulin dimer, about 80 Angstroms
along the microtubule. Meanwhile, ATP hydrolysis takes
place, and when the second head domain binds to the
microtubule, the first domain again replaces ADP with
ATP, triggering a conformational change that pulls the
first domain forward.
Length = 322
Score = 148 bits (377), Expect = 2e-40
Identities = 69/159 (43%), Positives = 95/159 (59%), Gaps = 15/159 (9%)
Query: 294 EEIDSLMAEGNKSRTVAATNMNSESSRSHAVFSVVLTQTLVDTKSGVEGEKVARLSLVDL 353
+E+ L+ GN RT +T N +SSRSHA+ ++L K+ + + +LS +DL
Sbjct: 178 DELLELIESGNSLRTTGSTGANDQSSRSHAILQIIL-------KNKKLNKLLGKLSFIDL 230
Query: 354 AGSERAVKTGAVG-ERLKEGSNINKSLTTLGLVISKLADSTSSSKNKDKFVPYRDSVLTW 412
AGSER T + KEG+ INKSL L I LA + + VP+R S LT
Sbjct: 231 AGSERGADTSEHDRQTRKEGAEINKSLLALKECIRALASNKA-------HVPFRGSKLTQ 283
Query: 413 LLKDNLGGNSKTVMVATVSPAADNYEETLSTLRYADRAK 451
+L+D+ GNSKTVM+AT+SP+A + E TL+TLRYADR K
Sbjct: 284 VLRDSFIGNSKTVMIATISPSASSCEHTLNTLRYADRVK 322
Score = 70.8 bits (174), Expect = 3e-13
Identities = 38/123 (30%), Positives = 63/123 (51%), Gaps = 18/123 (14%)
Query: 178 QLSGNLKINFGLF--FCFQVHDLLDPKANKQSLKVRE---HNVLGPYVDGLSQLAVTSFQ 232
Q + +L + F + ++ DLL+ +++ L V E NV + GL++ VTS
Sbjct: 125 QPNDDLGVTVSFFEIYGGKLFDLLN---DRKRLSVLEDGKGNV---QIVGLTEKPVTSVD 178
Query: 233 EIDSLMAEGNKSRTVAATNMNSESSRSHAVFSVVLTQTLVDTKSGVEGEKVARLSLVDLA 292
E+ L+ GN RT +T N +SSRSHA+ ++L K+ + + +LS +DLA
Sbjct: 179 ELLELIESGNSLRTTGSTGANDQSSRSHAILQIIL-------KNKKLNKLLGKLSFIDLA 231
Query: 293 SEE 295
E
Sbjct: 232 GSE 234
Score = 47.3 bits (113), Expect = 1e-05
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 8/61 (13%)
Query: 62 SNSTHAVFSVVLTQTLVDTKSGVEGEKVARLSLVDLAGSERAVKTGAVG-ERLKEGSNIN 120
S+ +HA+ ++L K+ + + +LS +DLAGSER T + KEG+ IN
Sbjct: 202 SSRSHAILQIIL-------KNKKLNKLLGKLSFIDLAGSERGADTSEHDRQTRKEGAEIN 254
Query: 121 K 121
K
Sbjct: 255 K 255
>gnl|CDD|238671 cd01375, KISc_KIF9_like, Kinesin motor domain, KIF9-like subgroup;
might play a role in cell shape remodeling. This
catalytic (head) domain has ATPase activity and belongs
to the larger group of P-loop NTPases. Kinesins are
microtubule-dependent molecular motors that play
important roles in intracellular transport and in cell
division. In most kinesins, the motor domain is found at
the N-terminus (N-type). N-type kinesins are (+)
end-directed motors, i.e. they transport cargo towards
the (+) end of the microtubule. Kinesin motor domains
hydrolyze ATP at a rate of about 80 per second, and move
along the microtubule at a speed of about 6400 Angstroms
per second. To achieve that, kinesin head groups work in
pairs. Upon replacing ADP with ATP, a kinesin motor
domain increases its affinity for microtubule binding
and locks in place. Also, the neck linker binds to the
motor domain, which repositions the other head domain
through the coiled-coil domain close to a second tubulin
dimer, about 80 Angstroms along the microtubule.
Meanwhile, ATP hydrolysis takes place, and when the
second head domain binds to the microtubule, the first
domain again replaces ADP with ATP, triggering a
conformational change that pulls the first domain
forward.
Length = 334
Score = 145 bits (368), Expect = 3e-39
Identities = 75/158 (47%), Positives = 101/158 (63%), Gaps = 8/158 (5%)
Query: 294 EEIDSLMAEGNKSRTVAATNMNSESSRSHAVFSVVLTQTLVDTKSGVEGEKVARLSLVDL 353
EE +L+ G +RT+A T+MN SSRSH +F++ L + S V ++++L+LVDL
Sbjct: 185 EEALNLLFLGETNRTIAETSMNQASSRSHCIFTIHLESRSREAGSEVV--RLSKLNLVDL 242
Query: 354 AGSERAVKTGAVGERLKEGSNINKSLTTLGLVISKLADSTSSSKNKDKFVPYRDSVLTWL 413
AGSER KTG G+ LKE INKSL+ L VI+ L S+ VPYR+S LT +
Sbjct: 243 AGSERVSKTGVSGQVLKEAKYINKSLSFLEQVINAL------SEKARTHVPYRNSKLTHV 296
Query: 414 LKDNLGGNSKTVMVATVSPAADNYEETLSTLRYADRAK 451
L+D+LGGN KTVM+AT+ N +ETLSTLR+A R
Sbjct: 297 LRDSLGGNCKTVMLATIWVEPSNLDETLSTLRFAQRVA 334
Score = 58.3 bits (141), Expect = 3e-09
Identities = 38/106 (35%), Positives = 61/106 (57%), Gaps = 6/106 (5%)
Query: 194 QVHDLL-DPKANKQSLK---VREHNVLGPYVDGLSQLAVTSFQEIDSLMAEGNKSRTVAA 249
Q++DLL D +SL + E + +V GLS + T+ +E +L+ G +RT+A
Sbjct: 143 QLYDLLGDTPEALESLPAVTILEDSEQNIHVKGLSLHSATTEEEALNLLFLGETNRTIAE 202
Query: 250 TNMNSESSRSHAVFSVVLTQTLVDTKSGVEGEKVARLSLVDLASEE 295
T+MN SSRSH +F++ L + S V ++++L+LVDLA E
Sbjct: 203 TSMNQASSRSHCIFTIHLESRSREAGSEV--VRLSKLNLVDLAGSE 246
Score = 52.1 bits (125), Expect = 3e-07
Identities = 27/62 (43%), Positives = 40/62 (64%), Gaps = 2/62 (3%)
Query: 60 KASNSTHAVFSVVLTQTLVDTKSGVEGEKVARLSLVDLAGSERAVKTGAVGERLKEGSNI 119
+AS+ +H +F++ L + S V ++++L+LVDLAGSER KTG G+ LKE I
Sbjct: 207 QASSRSHCIFTIHLESRSREAGSEVV--RLSKLNLVDLAGSERVSKTGVSGQVLKEAKYI 264
Query: 120 NK 121
NK
Sbjct: 265 NK 266
>gnl|CDD|238672 cd01376, KISc_KID_like, Kinesin motor domain, KIF22/Kid-like
subgroup. Members of this group might play a role in
regulating chromosomal movement along microtubules in
mitosis. This catalytic (head) domain has ATPase
activity and belongs to the larger group of P-loop
NTPases. Kinesins are microtubule-dependent molecular
motors that play important roles in intracellular
transport and in cell division. In most kinesins, the
motor domain is found at the N-terminus (N-type). N-type
kinesins are (+) end-directed motors, i.e. they
transport cargo towards the (+) end of the microtubule.
Kinesin motor domains hydrolyze ATP at a rate of about
80 per second, and move along the microtubule at a speed
of about 6400 Angstroms per second. To achieve that,
kinesin head groups work in pairs. Upon replacing ADP
with ATP, a kinesin motor domain increases its affinity
for microtubule binding and locks in place. Also, the
neck linker binds to the motor domain, which repositions
the other head domain through the coiled-coil domain
close to a second tubulin dimer, about 80 Angstroms
along the microtubule. Meanwhile, ATP hydrolysis takes
place, and when the second head domain binds to the
microtubule, the first domain again replaces ADP with
ATP, triggering a conformational change that pulls the
first domain forward.
Length = 319
Score = 127 bits (321), Expect = 8e-33
Identities = 68/158 (43%), Positives = 95/158 (60%), Gaps = 13/158 (8%)
Query: 294 EEIDSLMAEGNKSRTVAATNMNSESSRSHAVFSVVLTQTLVDTKSGVEGEKVARLSLVDL 353
E + +K+RTVAAT +N SSRSHAV + +TQ + + +EG +L+L+DL
Sbjct: 175 AEFEEAYIPASKNRTVAATKLNDNSSRSHAVLRIKVTQPASNIQ--LEG----KLNLIDL 228
Query: 354 AGSERAVKTGAVGERLKEGSNINKSLTTLGLVISKLADSTSSSKNKDKFVPYRDSVLTWL 413
AGSE +TG G RLKE + IN SL L V+ L +PYR+S LT L
Sbjct: 229 AGSEDNRRTGNEGIRLKESAAINSSLFVLSKVVDAL-------NKGLPRIPYRESKLTRL 281
Query: 414 LKDNLGGNSKTVMVATVSPAADNYEETLSTLRYADRAK 451
L+D+LGG S+ +MVA ++P Y++TLSTL +A R+K
Sbjct: 282 LQDSLGGGSRCIMVANIAPERSFYQDTLSTLNFASRSK 319
Score = 66.3 bits (162), Expect = 7e-12
Identities = 40/108 (37%), Positives = 62/108 (57%), Gaps = 14/108 (12%)
Query: 191 FCFQVHDLLDPKANKQSLKVRE---HNVLGPYVDGLSQLAVTSFQEIDSLMAEGNKSRTV 247
+ +V+DLL+P K+ L +RE N+L + GL+ + S E + +K+RTV
Sbjct: 136 YNEKVYDLLEPA--KKELPIREDKDGNIL---IVGLTSKPIKSMAEFEEAYIPASKNRTV 190
Query: 248 AATNMNSESSRSHAVFSVVLTQTLVDTKSGVEGEKVARLSLVDLASEE 295
AAT +N SSRSHAV + +TQ + + +EG +L+L+DLA E
Sbjct: 191 AATKLNDNSSRSHAVLRIKVTQPASNIQ--LEG----KLNLIDLAGSE 232
Score = 38.2 bits (89), Expect = 0.007
Identities = 25/60 (41%), Positives = 37/60 (61%), Gaps = 6/60 (10%)
Query: 62 SNSTHAVFSVVLTQTLVDTKSGVEGEKVARLSLVDLAGSERAVKTGAVGERLKEGSNINK 121
S+ +HAV + +TQ + + +EG +L+L+DLAGSE +TG G RLKE + IN
Sbjct: 199 SSRSHAVLRIKVTQPASNIQ--LEG----KLNLIDLAGSEDNRRTGNEGIRLKESAAINS 252
>gnl|CDD|223683 COG0610, COG0610, Type I site-specific restriction-modification
system, R (restriction) subunit and related helicases
[Defense mechanisms].
Length = 962
Score = 30.5 bits (69), Expect = 3.0
Identities = 17/85 (20%), Positives = 32/85 (37%)
Query: 441 LSTLRYADRAKRIVNHAVDNLGGNSKTVMVATVSPAADNYEETLSTLRYADRAKRIVNHA 500
+ +R AK I +H + K ++VA+ A E R +K + A
Sbjct: 496 MLAVRLIRAAKDIYDHFKKEEVFDLKAMVVASSRKVAVELYEAEIAARLDWHSKESLEGA 555
Query: 501 VVNEDPNARIIRELRQEVDKLKEML 525
+ + + + +Q KLK+
Sbjct: 556 IKDYNTEFETDFDKKQSHAKLKDEK 580
>gnl|CDD|235248 PRK04192, PRK04192, V-type ATP synthase subunit A; Provisional.
Length = 586
Score = 29.7 bits (68), Expect = 3.9
Identities = 41/151 (27%), Positives = 58/151 (38%), Gaps = 46/151 (30%)
Query: 417 NLGGNSKTV-MVATVSPAADNYEE--TLSTLRY--------ADRAKRIVNH--AVDNLGG 463
LGG +V ++ VSP ++ E T +TLR A+ A R H A++ L
Sbjct: 376 TLGGEEGSVTIIGAVSPPGGDFSEPVTQNTLRIVKVFWALDAELADR--RHFPAINWLTS 433
Query: 464 NSKTV------MVATVSPAADNY-EETLSTLRYADRAKRIVNHAVVNED--PN------- 507
S + V P +E + L+ + IV +V D P
Sbjct: 434 YSLYLDQVAPWWEENVDPDWRELRDEAMDLLQREAELQEIVR--LVGPDALPEEDRLILE 491
Query: 508 -ARIIRE--LRQ----EVD------KLKEML 525
AR+IRE L+Q VD K EML
Sbjct: 492 VARLIREDFLQQNAFDPVDTYCPPEKQYEML 522
>gnl|CDD|114894 pfam06202, GDE_C, Amylo-alpha-1,6-glucosidase. This family
includes human glycogen branching enzyme. This enzyme
contains a number of distinct catalytic activities. It
has been shown for the yeast homologue that mutations in
this region disrupt the enzymes
Amylo-alpha-1,6-glucosidase (EC:3.2.1.33).
Length = 367
Score = 29.6 bits (67), Expect = 4.2
Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 9/66 (13%)
Query: 162 YLKDCTLIGSSDKNDIQLSGNLKINFGLFFCFQVHDLLDPKANKQSLKVREHNVLGPYVD 221
L D + D+ D L + NF L LL P+ K++L + E +L PY
Sbjct: 213 ILYDV--LDPDDEKDYSL----RPNF-LIALSLPPTLLSPEKAKKALDLAEKKLLTPY-- 263
Query: 222 GLSQLA 227
GL L
Sbjct: 264 GLRTLD 269
>gnl|CDD|232945 TIGR00376, TIGR00376, DNA helicase, putative. The gene product may
represent a DNA helicase. Eukaryotic members of this
family have been characterized as binding certain
single-stranded G-rich DNA sequences (GGGGT and GGGCT).
A number of related proteins are characterized as
helicases [DNA metabolism, DNA replication,
recombination, and repair].
Length = 637
Score = 29.4 bits (66), Expect = 6.6
Identities = 14/71 (19%), Positives = 30/71 (42%), Gaps = 11/71 (15%)
Query: 464 NSKTVMVATVSPAADNYEETLSTL-----------RYADRAKRIVNHAVVNEDPNARIIR 512
+ ++ A + A DN E L+ R K+ ++ P +I+
Sbjct: 201 GLRVLVTAPSNIAVDNLLERLALCDQKIVRLGHPARLLKSNKQHSLDYLIENHPKYQIVA 260
Query: 513 ELRQEVDKLKE 523
++R+++D+L E
Sbjct: 261 DIREKIDELIE 271
>gnl|CDD|183375 PRK11908, PRK11908, NAD-dependent epimerase/dehydratase family
protein; Provisional.
Length = 347
Score = 28.9 bits (65), Expect = 7.1
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 10/45 (22%)
Query: 15 DSLFDLIAKQESSELTYNPYIRTPIRKYEMIYSCRVSML-KMIYG 58
D FD E+S L Y P I K IY+C ++ ++I+
Sbjct: 127 DEEFD----PEASPLVYGP-----INKPRWIYACSKQLMDRVIWA 162
>gnl|CDD|221790 pfam12819, Malectin_like, Carbohydrate-binding protein of the ER.
Malectin is a membrane-anchored protein of the
endoplasmic reticulum that recognises and binds
Glc2-N-glycan. The domain is found on a number of plant
receptor kinases.
Length = 335
Score = 28.5 bits (64), Expect = 8.9
Identities = 18/72 (25%), Positives = 28/72 (38%), Gaps = 8/72 (11%)
Query: 210 VREHNVLGPYVDGLSQLAVTSFQEIDSLMAEGNKSRTVAATNMNSESSRSHAVFSVVLTQ 269
+R + G Y S + SF L N TV +N + +S + V +
Sbjct: 76 IRATFLYGNYDGLNSVSSPPSFD----LYLGVNLWTTVNLSNDSGDSVVKEYIIHVTKSD 131
Query: 270 T----LVDTKSG 277
T LV+T +G
Sbjct: 132 TLSVCLVNTGTG 143
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.312 0.128 0.340
Gapped
Lambda K H
0.267 0.0794 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 25,874,723
Number of extensions: 2472366
Number of successful extensions: 1860
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1793
Number of HSP's successfully gapped: 102
Length of query: 544
Length of database: 10,937,602
Length adjustment: 102
Effective length of query: 442
Effective length of database: 6,413,494
Effective search space: 2834764348
Effective search space used: 2834764348
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 61 (27.2 bits)