RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12523
(544 letters)
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics,
structural genomics consortium, SGC, ATP-binding,
microtubule, motor protein; HET: ADP; 2.10A {Homo
sapiens}
Length = 354
Score = 351 bits (903), Expect = e-118
Identities = 159/263 (60%), Positives = 176/263 (66%), Gaps = 63/263 (23%)
Query: 194 QVHDLLDPKANKQSLKVREHNVLGPYVDGLSQLAVTSFQEIDSLMAEGNKSRTVAATNMN 253
+V DLLDPK ++Q+LKVREH+VLGPYVDGLS
Sbjct: 154 KVRDLLDPKGSRQTLKVREHSVLGPYVDGLS----------------------------- 184
Query: 254 SESSRSHAVFSVVLTQTLVDTKSGVEGEKVARLSLVDLASEEIDSLMAEGNKSRTVAATN 313
AV S ++I+SLM+EGNKSRTVAATN
Sbjct: 185 -----KLAVTSY----------------------------KDIESLMSEGNKSRTVAATN 211
Query: 314 MNSESSRSHAVFSVVLTQTLVDTKSGVEGEKVARLSLVDLAGSERAVKTGAVGERLKEGS 373
MN ESSRSHAVF + LT TL D KSG GEKV +LSLVDLAGSERA KTGA G+RLKEGS
Sbjct: 212 MNEESSRSHAVFKITLTHTLYDVKSGTSGEKVGKLSLVDLAGSERATKTGAAGDRLKEGS 271
Query: 374 NINKSLTTLGLVISKLADSTSSSKNKDKFVPYRDSVLTWLLKDNLGGNSKTVMVATVSPA 433
NINKSLTTLGLVIS LAD S+ KNK+KFVPYRDSVLTWLLKD+LGGNSKT MVATVSPA
Sbjct: 272 NINKSLTTLGLVISALADQ-SAGKNKNKFVPYRDSVLTWLLKDSLGGNSKTAMVATVSPA 330
Query: 434 ADNYEETLSTLRYADRAKRIVNH 456
ADNY+ETLSTLRYADRAK +H
Sbjct: 331 ADNYDETLSTLRYADRAKHHHHH 353
Score = 123 bits (310), Expect = 4e-31
Identities = 69/171 (40%), Positives = 83/171 (48%), Gaps = 56/171 (32%)
Query: 1 MGSQDNKGIIPRLCDSLFDLIAKQESSELT----------YN------------------ 32
MG+ D G+IPRLC LF+ K+E+ E + YN
Sbjct: 111 MGTADQPGLIPRLCSGLFERTQKEENEEQSFKVEVSYMEIYNEKVRDLLDPKGSRQTLKV 170
Query: 33 -------PYI----RTPIRKYEMIYSCRVSMLKMIYGLK----AS---NST----HAVFS 70
PY+ + + Y+ I S M G K A+ N HAVF
Sbjct: 171 REHSVLGPYVDGLSKLAVTSYKDIESL------MSEGNKSRTVAATNMNEESSRSHAVFK 224
Query: 71 VVLTQTLVDTKSGVEGEKVARLSLVDLAGSERAVKTGAVGERLKEGSNINK 121
+ LT TL D KSG GEKV +LSLVDLAGSERA KTGA G+RLKEGSNINK
Sbjct: 225 ITLTHTLYDVKSGTSGEKVGKLSLVDLAGSERATKTGAAGDRLKEGSNINK 275
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha
and beta protein, enzyme, ATPase, P-loop, motor protein,
ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus}
SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A*
2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C*
1ia0_K* 2hxh_C*
Length = 366
Score = 319 bits (820), Expect = e-105
Identities = 110/172 (63%), Positives = 129/172 (75%), Gaps = 5/172 (2%)
Query: 294 EEIDSLMAEGNKSRTVAATNMNSESSRSHAVFSVVLTQTLVDTKSGVEGEKVARLSLVDL 353
+I LM GNK RTVAATNMN SSRSHAVF+++ TQ D ++ + EKV+++SLVDL
Sbjct: 190 NDIQDLMDSGNKPRTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITTEKVSKISLVDL 249
Query: 354 AGSERAVKTGAVGERLKEGSNINKSLTTLGLVISKLADSTS-----SSKNKDKFVPYRDS 408
AGSERA TGA G RLKEG+NINKSLTTLG VIS LA+ S K K F+PYRDS
Sbjct: 250 AGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYRDS 309
Query: 409 VLTWLLKDNLGGNSKTVMVATVSPAADNYEETLSTLRYADRAKRIVNHAVDN 460
VLTWLL++NLGGNS+T MVA +SPA NY+ETLSTLRYADRAK+I N N
Sbjct: 310 VLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQIRNTVSVN 361
Score = 114 bits (289), Expect = 3e-28
Identities = 57/172 (33%), Positives = 78/172 (45%), Gaps = 57/172 (33%)
Query: 1 MGSQD--NKGIIPRLCDSLFDLIAKQESSELT----------YN---------------- 32
MG Q+ +GIIP+LC+ LF I + ++ Y
Sbjct: 108 MGKQEKDQQGIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKGNLR 167
Query: 33 --------PYI----RTPIRKYEMIYSCRVSMLKMIYGLK----AS---NST----HAVF 69
PY+ + + Y I M G K A+ N T HAVF
Sbjct: 168 VREHPLLGPYVEDLSKLAVTSYNDIQDL------MDSGNKPRTVAATNMNETSSRSHAVF 221
Query: 70 SVVLTQTLVDTKSGVEGEKVARLSLVDLAGSERAVKTGAVGERLKEGSNINK 121
+++ TQ D ++ + EKV+++SLVDLAGSERA TGA G RLKEG+NINK
Sbjct: 222 NIIFTQKRHDAETNITTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINK 273
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain,
ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora
crassa}
Length = 443
Score = 312 bits (801), Expect = e-101
Identities = 109/257 (42%), Positives = 136/257 (52%), Gaps = 62/257 (24%)
Query: 283 VARLSLVDLAS-EEIDSLMAEGNKSRTVAATNMNSESSRSHAVFSVVLTQTLVDTKSGVE 341
V L+ V + EEI M G+ SRTVA+T MN SSRSHAVF+++L Q D ++
Sbjct: 229 VKDLTEVPVRGLEEIIRWMRIGDGSRTVASTKMNDTSSRSHAVFTIMLKQIHHDLETDDT 288
Query: 342 GEKVARLSLVDLAGSERAVKTGAVGERLKEGSNINKSLTTLGLVISKLADSTSSSKN--- 398
E+ +R+ LVDLAGSERA T A G+RL+EGSNINKSLTTLG VI+ LAD SS+
Sbjct: 289 TERSSRIRLVDLAGSERAKSTEATGQRLREGSNINKSLTTLGRVIAALADPKSSASRPSS 348
Query: 399 ------------KDKFVPYRDSVLTWLLKDNLGGNSKTVMVATVSPAADNYEETLSTLRY 446
+ VPYRDSVLTWLLKD+LGGNSKT M+A +SP
Sbjct: 349 PVKSGRGRTPGPANSVVPYRDSVLTWLLKDSLGGNSKTAMIACISPT------------- 395
Query: 447 ADRAKRIVNHAVDNLGGNSKTVMVATVSPAADNYEETLSTLRYADRAKRIVNHAVVNEDP 506
+Y+ETLSTLRYAD+AKRI AVVN+
Sbjct: 396 --------------------------------DYDETLSTLRYADQAKRIRTRAVVNQVD 423
Query: 507 NARIIRELRQEVDKLKE 523
E ++ +
Sbjct: 424 GVSAA-ERDAQIPSIVH 439
Score = 115 bits (289), Expect = 7e-28
Identities = 55/170 (32%), Positives = 76/170 (44%), Gaps = 49/170 (28%)
Query: 1 MGSQDNKGIIPRLCDSLFDLIAKQESSELT------------YNPYIR---TPIRKYEMI 45
MG+ D G+IPR C+ LF IA + YN ++R P+ +
Sbjct: 155 MGTPDQPGLIPRTCEDLFQRIASAQDETPNISYNVKVSYFEVYNEHVRDLLAPVVPNKPP 214
Query: 46 YSCRV-------------SMLK----------MIYGLK----AS---NST----HAVFSV 71
Y +V + + M G AS N T HAVF++
Sbjct: 215 YYLKVRESPTEGPYVKDLTEVPVRGLEEIIRWMRIGDGSRTVASTKMNDTSSRSHAVFTI 274
Query: 72 VLTQTLVDTKSGVEGEKVARLSLVDLAGSERAVKTGAVGERLKEGSNINK 121
+L Q D ++ E+ +R+ LVDLAGSERA T A G+RL+EGSNINK
Sbjct: 275 MLKQIHHDLETDDTTERSSRIRLVDLAGSERAKSTEATGQRLREGSNINK 324
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor
domain, ADP, SGC, ATP-binding, coiled coil, microtubule,
motor protein; HET: ADP; 1.80A {Homo sapiens} PDB:
3b6v_A*
Length = 372
Score = 302 bits (775), Expect = 2e-98
Identities = 99/222 (44%), Positives = 124/222 (55%), Gaps = 50/222 (22%)
Query: 294 EEIDSLMAEGNKSRTVAATNMNSESSRSHAVFSVVLTQTLVDTKSGVEGEKVARLSLVDL 353
+EI+ +M GN++R+V ATNMN SSRSHA+F + + + V G +V +L+LVDL
Sbjct: 201 KEIEHVMNVGNQNRSVGATNMNEHSSRSHAIFVITIECSEVGL-DGENHIRVGKLNLVDL 259
Query: 354 AGSERAVKTGAVGERLKEGSNINKSLTTLGLVISKLADSTSSSKNKDKFVPYRDSVLTWL 413
AGSER KTGA GERLKE + IN SL+ LG VIS L D K +PYRDS LT L
Sbjct: 260 AGSERQAKTGAQGERLKEATKINLSLSALGNVISALVD------GKSTHIPYRDSKLTRL 313
Query: 414 LKDNLGGNSKTVMVATVSPAADNYEETLSTLRYADRAKRIVNHAVDNLGGNSKTVMVATV 473
L+ D+LGGN+KTVMVA V
Sbjct: 314 LQ-------------------------------------------DSLGGNAKTVMVANV 330
Query: 474 SPAADNYEETLSTLRYADRAKRIVNHAVVNEDPNARIIRELR 515
PA+ N EETL+TLRYA+RAK I N VNEDP ++RE +
Sbjct: 331 GPASYNVEETLTTLRYANRAKNIKNKPRVNEDPKDALLREFQ 372
Score = 152 bits (387), Expect = 1e-41
Identities = 45/123 (36%), Positives = 65/123 (52%), Gaps = 12/123 (9%)
Query: 194 QVHDLLDPKANKQSLKVREHNVLGPYVDGLSQLAVTSFQEIDSLMAEGNKSRTVAATNMN 253
++ DLL + L+++E G YV LS S +EI+ +M GN++R+V ATNMN
Sbjct: 164 EIRDLLSKD-QTKRLELKERPDTGVYVKDLSSFVTKSVKEIEHVMNVGNQNRSVGATNMN 222
Query: 254 SESSRSHAVFSVVLTQTLVDTKSGVEGEKVARLSLVDLA-SEEIDSLMAEG--------- 303
SSRSHA+F + + + V G +V +L+LVDLA SE A+G
Sbjct: 223 EHSSRSHAIFVITIECSEVGL-DGENHIRVGKLNLVDLAGSERQAKTGAQGERLKEATKI 281
Query: 304 NKS 306
N S
Sbjct: 282 NLS 284
Score = 106 bits (266), Expect = 3e-25
Identities = 42/169 (24%), Positives = 64/169 (37%), Gaps = 56/169 (33%)
Query: 1 MGSQDNKGIIPRLCDSLFDLIAKQESSELT--------YN-------------------- 32
G + +G+IP D +F I++ ++ + Y
Sbjct: 123 RGDPEKRGVIPNSFDHIFTHISRSQNQQYLVRASYLEIYQEEIRDLLSKDQTKRLELKER 182
Query: 33 ----PYIR----TPIRKYEMIYSCRVSMLKMIYGLKA------------SNSTHAVFSVV 72
Y++ + + I M G + S S HA+F +
Sbjct: 183 PDTGVYVKDLSSFVTKSVKEIEHV------MNVGNQNRSVGATNMNEHSSRS-HAIFVIT 235
Query: 73 LTQTLVDTKSGVEGEKVARLSLVDLAGSERAVKTGAVGERLKEGSNINK 121
+ + V G +V +L+LVDLAGSER KTGA GERLKE + IN
Sbjct: 236 IECSEVGL-DGENHIRVGKLNLVDLAGSERQAKTGAQGERLKEATKINL 283
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule,
ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Length = 350
Score = 296 bits (759), Expect = 2e-96
Identities = 95/189 (50%), Positives = 123/189 (65%), Gaps = 13/189 (6%)
Query: 273 DTKSGVEGEKVARLSLVDLAS-EEIDSLMAEGNKSRTVAATNMNSESSRSHAVFSVVLTQ 331
D G+ V LS+ + + E+ +LM +G +R VAAT MN SSRSH++F V +
Sbjct: 166 DKTRGI---YVDGLSMHRVTTAAELSALMDKGFANRHVAATQMNDTSSRSHSIFMVRIEC 222
Query: 332 TLVDTKSGVEGEKVARLSLVDLAGSERAVKTGAVGERLKEGSNINKSLTTLGLVISKLAD 391
+ + E +V +L+LVDLAGSER KTGA GE L EG+ IN SL+ LGLVISKL +
Sbjct: 223 S--EVIENKEVIRVGKLNLVDLAGSERQSKTGATGETLVEGAKINLSLSALGLVISKLVE 280
Query: 392 STSSSKNKDKFVPYRDSVLTWLLKDNLGGNSKTVMVATVSPAADNYEETLSTLRYADRAK 451
+PYRDS LT LL+D+LGGNSKT+M A +SPA+ NY+ET+STLRYADRAK
Sbjct: 281 -------GATHIPYRDSKLTRLLQDSLGGNSKTLMCANISPASTNYDETMSTLRYADRAK 333
Query: 452 RIVNHAVDN 460
+I N N
Sbjct: 334 QIKNKPRIN 342
Score = 151 bits (383), Expect = 3e-41
Identities = 45/123 (36%), Positives = 64/123 (52%), Gaps = 8/123 (6%)
Query: 194 QVHDLLDPKANKQSLKVREHNVLGPYVDGLSQLAVTSFQEIDSLMAEGNKSRTVAATNMN 253
++ DL+ L ++E G YVDGLS VT+ E+ +LM +G +R VAAT MN
Sbjct: 150 EIRDLIKNNTK---LPLKEDKTRGIYVDGLSMHRVTTAAELSALMDKGFANRHVAATQMN 206
Query: 254 SESSRSHAVFSVVLTQTLVDTKSGVEGEKVARLSLVDLA-SEEIDSLMAEGNKSRTVAAT 312
SSRSH++F V + + + E +V +L+LVDLA SE A G V
Sbjct: 207 DTSSRSHSIFMVRIECS--EVIENKEVIRVGKLNLVDLAGSERQSKTGATG--ETLVEGA 262
Query: 313 NMN 315
+N
Sbjct: 263 KIN 265
Score = 107 bits (270), Expect = 8e-26
Identities = 43/168 (25%), Positives = 62/168 (36%), Gaps = 56/168 (33%)
Query: 1 MGSQDNKGIIPRLCDSLFDLIAKQESS----------ELTYN------------------ 32
G+++ G IP LFD I S+ EL YN
Sbjct: 108 GGNKEEPGAIPNSFKHLFDAINSSSSNQNFLVIGSYLEL-YNEEIRDLIKNNTKLPLKED 166
Query: 33 ----PYIR----TPIRKYEMIYSCRVSMLKMIYGLKA-----------SNSTHAVFSVVL 73
Y+ + + + M G S+ +H++F V +
Sbjct: 167 KTRGIYVDGLSMHRVTTAAELSAL------MDKGFANRHVAATQMNDTSSRSHSIFMVRI 220
Query: 74 TQTLVDTKSGVEGEKVARLSLVDLAGSERAVKTGAVGERLKEGSNINK 121
+ + E +V +L+LVDLAGSER KTGA GE L EG+ IN
Sbjct: 221 ECS--EVIENKEVIRVGKLNLVDLAGSERQSKTGATGETLVEGAKINL 266
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP
complex, stranded beta-sheet core with solvent exposed
alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Length = 349
Score = 295 bits (758), Expect = 3e-96
Identities = 84/247 (34%), Positives = 115/247 (46%), Gaps = 55/247 (22%)
Query: 273 DTKSGVEGEKVARLSLVDLAS-EEIDSLMAEGNKSRTVAATNMNSESSRSHAVFSVVLTQ 331
D V VA L+ + + E + +G KSR T MN SSRSH +F ++L
Sbjct: 156 DVNRNV---YVADLTEEVVYTSEMALKWITKGEKSRHYGETKMNQRSSRSHTIFRMILES 212
Query: 332 TLVDTKSGVEGE-KVARLSLVDLAGSERAVKTGAVGERLKEGSNINKSLTTLGLVISKLA 390
S EG KV+ L+LVDLAGSERA +TGA G RLKEG NIN+SL LG VI KL+
Sbjct: 213 REKGEPSNCEGSVKVSHLNLVDLAGSERAAQTGAAGVRLKEGCNINRSLFILGQVIKKLS 272
Query: 391 DSTSSSKNKDKFVPYRDSVLTWLLKDNLGGNSKTVMVATVSPAADNYEETLSTLRYADRA 450
D F+ YRDS LT +L+++LGGN+KT ++ T++P
Sbjct: 273 DGQVG-----GFINYRDSKLTRILQNSLGGNAKTRIICTITPV----------------- 310
Query: 451 KRIVNHAVDNLGGNSKTVMVATVSPAADNYEETLSTLRYADRAKRIVNHAVVNEDPNARI 510
+++ETL+ L++A AK + N VNE +
Sbjct: 311 ----------------------------SFDETLTALQFASTAKYMKNTPYVNEVSTDEL 342
Query: 511 IRELRQE 517
Sbjct: 343 EHHHHHH 349
Score = 151 bits (385), Expect = 1e-41
Identities = 41/124 (33%), Positives = 56/124 (45%), Gaps = 11/124 (8%)
Query: 194 QVHDLLDPKANKQSLKVREHNVLGPYVDGLSQLAVTSFQEIDSLMAEGNKSRTVAATNMN 253
+ DLL + L +RE YV L++ V + + + +G KSR T MN
Sbjct: 137 TITDLLCGTQKMKPLIIREDVNRNVYVADLTEEVVYTSEMALKWITKGEKSRHYGETKMN 196
Query: 254 SESSRSHAVFSVVLTQTLVDTKSGVEGE-KVARLSLVDLA-SEEIDSLMAEG-------- 303
SSRSH +F ++L S EG KV+ L+LVDLA SE A G
Sbjct: 197 QRSSRSHTIFRMILESREKGEPSNCEGSVKVSHLNLVDLAGSERAAQTGAAGVRLKEGCN 256
Query: 304 -NKS 306
N+S
Sbjct: 257 INRS 260
Score = 108 bits (271), Expect = 6e-26
Identities = 52/171 (30%), Positives = 67/171 (39%), Gaps = 57/171 (33%)
Query: 1 MGSQDNKGIIPRLCDSLFDLIAKQESSELT--------YN-------------------- 32
MGS+D+ G+IPR +F I K E YN
Sbjct: 96 MGSEDHLGVIPRAIHDIFQKIKKFPDREFLLRVSYMEIYNETITDLLCGTQKMKPLIIRE 155
Query: 33 -----PYIR----TPIRKYEMIYSCRVSMLKMIYGLKA------------SNSTHAVFSV 71
Y+ + EM + G K+ S S H +F +
Sbjct: 156 DVNRNVYVADLTEEVVYTSEMALKW------ITKGEKSRHYGETKMNQRSSRS-HTIFRM 208
Query: 72 VLTQTLVDTKSGVEGE-KVARLSLVDLAGSERAVKTGAVGERLKEGSNINK 121
+L S EG KV+ L+LVDLAGSERA +TGA G RLKEG NIN+
Sbjct: 209 ILESREKGEPSNCEGSVKVSHLNLVDLAGSERAAQTGAAGVRLKEGCNINR 259
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A
{Neurospora crassa} SCOP: c.37.1.9
Length = 355
Score = 293 bits (753), Expect = 2e-95
Identities = 89/230 (38%), Positives = 119/230 (51%), Gaps = 56/230 (24%)
Query: 294 EEIDSLMAEGNKSRTVAATNMNSESSRSHAVFSVVLTQTLVDTKSGVEGEKVARLSLVDL 353
+E+ +M G +R VAATNMN ESSRSH++F + +TQ V+T K +L LVDL
Sbjct: 181 QEVYEVMRRGGNARAVAATNMNQESSRSHSIFVITITQKNVET----GSAKSGQLFLVDL 236
Query: 354 AGSERAVKTGAVGERLKEGSNINKSLTTLGLVISKLADSTSSSKNKDKFVPYRDSVLTWL 413
AGSE+ KTGA G+ L+E INKSL+ LG+VI+ L D K VPYRDS LT +
Sbjct: 237 AGSEKVGKTGASGQTLEEAKKINKSLSALGMVINALTD------GKSSHVPYRDSKLTRI 290
Query: 414 LKDNLGGNSKTVMVATVSPAADNYEETLSTLRYADRAKRIVNHAVDNLGGNSKTVMVATV 473
L+ ++LGGNS+T ++
Sbjct: 291 LQ-------------------------------------------ESLGGNSRTTLIINC 307
Query: 474 SPAADNYEETLSTLRYADRAKRIVNHAVVNEDPNARIIRELRQEVDKLKE 523
SP++ N ETLSTLR+ RAK I N A VN + + EL+Q + K K
Sbjct: 308 SPSSYNDAETLSTLRFGMRAKSIKNKAKVNAELSP---AELKQMLAKAKT 354
Score = 146 bits (370), Expect = 2e-39
Identities = 51/123 (41%), Positives = 69/123 (56%), Gaps = 16/123 (13%)
Query: 194 QVHDLLDPKANKQSLKVREHNVLGPYVDGLSQLAVTSFQEIDSLMAEGNKSRTVAATNMN 253
++ DLL P+ +L V E G YV GL ++ V+S QE+ +M G +R VAATNMN
Sbjct: 145 RIRDLLAPQ--NDNLPVHEEKNRGVYVKGLLEIYVSSVQEVYEVMRRGGNARAVAATNMN 202
Query: 254 SESSRSHAVFSVVLTQTLVDTKSGVEGEKVARLSLVDLA-SEEIDSLMAEG--------- 303
ESSRSH++F + +TQ V+T K +L LVDLA SE++ A G
Sbjct: 203 QESSRSHSIFVITITQKNVET----GSAKSGQLFLVDLAGSEKVGKTGASGQTLEEAKKI 258
Query: 304 NKS 306
NKS
Sbjct: 259 NKS 261
Score = 98.8 bits (247), Expect = 8e-23
Identities = 42/170 (24%), Positives = 65/170 (38%), Gaps = 61/170 (35%)
Query: 1 MGSQDNKGIIPRLCDSLFDLIAKQESS----------ELTYN------------------ 32
+ D +G+IPR+ + +F I ++ E+ Y
Sbjct: 103 IDDPDGRGVIPRIVEQIFTSILSSAANIEYTVRVSYMEI-YMERIRDLLAPQNDNLPVHE 161
Query: 33 -----PYIR----TPIRKYEMIYSCRVSMLKMIYGLKA------------SNSTHAVFSV 71
Y++ + + +Y M G A S S H++F +
Sbjct: 162 EKNRGVYVKGLLEIYVSSVQEVYEV------MRRGGNARAVAATNMNQESSRS-HSIFVI 214
Query: 72 VLTQTLVDTKSGVEGEKVARLSLVDLAGSERAVKTGAVGERLKEGSNINK 121
+TQ V+T K +L LVDLAGSE+ KTGA G+ L+E INK
Sbjct: 215 TITQKNVET----GSAKSGQLFLVDLAGSEKVGKTGASGQTLEEAKKINK 260
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural
genomics consortium domain, ADP, SGC, ATP-binding,
DNA-binding, microtubule, MO protein; HET: ADP; 2.30A
{Homo sapiens}
Length = 388
Score = 294 bits (754), Expect = 3e-95
Identities = 69/254 (27%), Positives = 108/254 (42%), Gaps = 57/254 (22%)
Query: 273 DTKSGVEGEKVARLSLVDLAS-EEIDSLMAEGNKSRTVAATNMNSESSRSHAVFSVVLTQ 331
D + + + LS ++S + + +++RTV AT +N SSRSHAV V + Q
Sbjct: 179 DCRGNI---LIPGLSQKPISSFADFERHFLPASRNRTVGATRLNQRSSRSHAVLLVKVDQ 235
Query: 332 TLVDTKSGVEGEKVARLSLVDLAGSERAVKTGAVGERLKEGSNINKSLTTLGLVISKLAD 391
+ ++ +L L+DLAGSE +TG G RLKE IN SL LG V+ L
Sbjct: 236 R---ERLAPFRQREGKLYLIDLAGSEDNRRTGNKGLRLKESGAINTSLFVLGKVVDALNQ 292
Query: 392 STSSSKNKDKFVPYRDSVLTWLLKDNLGGNSKTVMVATVSPAADNYEETLSTLRYADRAK 451
VPYRDS LT LL+
Sbjct: 293 -------GLPRVPYRDSKLTRLLQ------------------------------------ 309
Query: 452 RIVNHAVDNLGGNSKTVMVATVSPAADNYEETLSTLRYADRAKRIVNHAVVNEDPNARII 511
D+LGG++ ++++A ++P Y +T+S L +A R+K ++N NE +
Sbjct: 310 -------DSLGGSAHSILIANIAPERRFYLDTVSALNFAARSKEVINRPFTNESLQPHAL 362
Query: 512 RELRQEVDKLKEML 525
++ +L
Sbjct: 363 GPVKLSQKELLGPP 376
Score = 139 bits (353), Expect = 8e-37
Identities = 40/123 (32%), Positives = 61/123 (49%), Gaps = 8/123 (6%)
Query: 194 QVHDLLDPKANKQSLKVREHNVLGPYVDGLSQLAVTSFQEIDSLMAEGNKSRTVAATNMN 253
+V DLLDP L +RE + GLSQ ++SF + + +++RTV AT +N
Sbjct: 162 KVLDLLDPA--SGDLVIREDCRGNILIPGLSQKPISSFADFERHFLPASRNRTVGATRLN 219
Query: 254 SESSRSHAVFSVVLTQTLVDTKSGVEGEKVARLSLVDLA-SEEIDSLMAEGNKSRTVAAT 312
SSRSHAV V + Q + ++ +L L+DLA SE+ +G R +
Sbjct: 220 QRSSRSHAVLLVKVDQR---ERLAPFRQREGKLYLIDLAGSEDNRRTGNKG--LRLKESG 274
Query: 313 NMN 315
+N
Sbjct: 275 AIN 277
Score = 99.2 bits (248), Expect = 1e-22
Identities = 35/172 (20%), Positives = 52/172 (30%), Gaps = 61/172 (35%)
Query: 1 MGSQDNKGIIPRLCDSLFDLIAKQESSELT------------YNPYIR------------ 36
+GS + G+IPR L L ++ + Y +
Sbjct: 117 LGSPEQPGVIPRALMDLLQLTREEGAEGRPWALSVTMSYLEIYQEKVLDLLDPASGDLVI 176
Query: 37 ---------------TPIRKYEMIYSCRVSMLKMIYGLKA------------SNSTHAVF 69
PI + + + S S HAV
Sbjct: 177 REDCRGNILIPGLSQKPISSFADFERH------FLPASRNRTVGATRLNQRSSRS-HAVL 229
Query: 70 SVVLTQTLVDTKSGVEGEKVARLSLVDLAGSERAVKTGAVGERLKEGSNINK 121
V + Q + ++ +L L+DLAGSE +TG G RLKE IN
Sbjct: 230 LVKVDQR---ERLAPFRQREGKLYLIDLAGSEDNRRTGNKGLRLKESGAINT 278
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding,
microtubule binding, ATP- cell projection, cytoskeleton,
glycoprotein, microtubule; HET: ADP; 2.20A {Homo
sapiens}
Length = 355
Score = 292 bits (750), Expect = 5e-95
Identities = 93/182 (51%), Positives = 125/182 (68%), Gaps = 9/182 (4%)
Query: 273 DTKSGVEGEKVARLSLVDLAS-EEIDSLMAEGNKSRTVAATNMNSESSRSHAVFSVVLTQ 331
DT+ GV V L+L S EEI L+ GNK+RT T+MN+ SSRSHAVF + L Q
Sbjct: 182 DTQKGV---VVHGLTLHQPKSSEEILHLLDNGNKNRTQHPTDMNATSSRSHAVFQIYLRQ 238
Query: 332 TLVDTKSGVEGEKVARLSLVDLAGSERAVKTGAVGERLKEGSNINKSLTTLGLVISKLAD 391
S + ++A++SL+DLAGSERA +GA G R EG+NIN+SL LG VI+ LAD
Sbjct: 239 QDKTA-SINQNVRIAKMSLIDLAGSERASTSGAKGTRFVEGTNINRSLLALGNVINALAD 297
Query: 392 STSSSKNKDKFVPYRDSVLTWLLKDNLGGNSKTVMVATVSPAADNYEETLSTLRYADRAK 451
S K K++ +PYR+S LT LLKD+LGGN +T+M+A VSP++ Y++T +TL+YA+RAK
Sbjct: 298 S----KRKNQHIPYRNSKLTRLLKDSLGGNCQTIMIAAVSPSSVFYDDTYNTLKYANRAK 353
Query: 452 RI 453
I
Sbjct: 354 DI 355
Score = 145 bits (367), Expect = 6e-39
Identities = 50/123 (40%), Positives = 67/123 (54%), Gaps = 7/123 (5%)
Query: 194 QVHDLLDPKANKQSLKVREHNVLGPYVDGLSQLAVTSFQEIDSLMAEGNKSRTVAATNMN 253
Q+ DLL L VRE G V GL+ S +EI L+ GNK+RT T+MN
Sbjct: 166 QIRDLLVNSGP---LAVREDTQKGVVVHGLTLHQPKSSEEILHLLDNGNKNRTQHPTDMN 222
Query: 254 SESSRSHAVFSVVLTQTLVDTKSGVEGEKVARLSLVDLA-SEEIDSLMAEGNKSRTVAAT 312
+ SSRSHAVF + L Q S + ++A++SL+DLA SE + A+G R V T
Sbjct: 223 ATSSRSHAVFQIYLRQQDKTA-SINQNVRIAKMSLIDLAGSERASTSGAKGT--RFVEGT 279
Query: 313 NMN 315
N+N
Sbjct: 280 NIN 282
Score = 107 bits (269), Expect = 1e-25
Identities = 41/162 (25%), Positives = 65/162 (40%), Gaps = 43/162 (26%)
Query: 1 MGSQDNKGIIPRLCDSLFDLIAKQESS----------ELTYNPYIR---TPIRKYEM--- 44
+GS D G++ L+ + + + E+ YN IR +
Sbjct: 124 LGSADEPGVMYLTMLHLYKCMDEIKEEKICSTAVSYLEV-YNEQIRDLLVNSGPLAVRED 182
Query: 45 ----IY-----SCRVS-----MLKMIYGLKA-------SNST----HAVFSVVLTQTLVD 79
+ + + + G K N+T HAVF + L Q
Sbjct: 183 TQKGVVVHGLTLHQPKSSEEILHLLDNGNKNRTQHPTDMNATSSRSHAVFQIYLRQQDKT 242
Query: 80 TKSGVEGEKVARLSLVDLAGSERAVKTGAVGERLKEGSNINK 121
S + ++A++SL+DLAGSERA +GA G R EG+NIN+
Sbjct: 243 A-SINQNVRIAKMSLIDLAGSERASTSGAKGTRFVEGTNINR 283
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker,
cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP:
c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A*
2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A*
2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A*
1q0b_A* ...
Length = 359
Score = 288 bits (740), Expect = 2e-93
Identities = 80/167 (47%), Positives = 110/167 (65%), Gaps = 8/167 (4%)
Query: 294 EEIDSLMAEGNKSRTVAATNMNSESSRSHAVFSVVLTQTLVDTKSGVEGEKVARLSLVDL 353
+E+ ++ +G RT AAT MN+ SSRSH+VFSV + G E K+ +L+LVDL
Sbjct: 199 DEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTI-DGEELVKIGKLNLVDL 257
Query: 354 AGSERAVKTGAVGERLKEGSNINKSLTTLGLVISKLADSTSSSKNKDKFVPYRDSVLTWL 413
AGSE ++GAV +R +E NIN+SL TLG VI+ L + + VPYR+S LT +
Sbjct: 258 AGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVE-------RTPHVPYRESKLTRI 310
Query: 414 LKDNLGGNSKTVMVATVSPAADNYEETLSTLRYADRAKRIVNHAVDN 460
L+D+LGG ++T ++AT+SPA+ N EETLSTL YA RAK I+N N
Sbjct: 311 LQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVN 357
Score = 138 bits (350), Expect = 1e-36
Identities = 43/126 (34%), Positives = 67/126 (53%), Gaps = 14/126 (11%)
Query: 194 QVHDLLDPKAN-KQSLKVREH--NVLGPYVDGLSQLAVTSFQEIDSLMAEGNKSRTVAAT 250
++ DLL+P ++ + L++ + N G + GL ++ V + E+ ++ +G RT AAT
Sbjct: 158 ELFDLLNPSSDVSERLQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAAT 217
Query: 251 NMNSESSRSHAVFSVVLTQTLVDTKSGVEGEKVARLSLVDLA-SEEIDSLMAEG------ 303
MN+ SSRSH+VFSV + G E K+ +L+LVDLA SE I A
Sbjct: 218 LMNAYSSRSHSVFSVTIHMKETTI-DGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREA 276
Query: 304 ---NKS 306
N+S
Sbjct: 277 GNINQS 282
Score = 96.1 bits (240), Expect = 7e-22
Identities = 39/165 (23%), Positives = 63/165 (38%), Gaps = 49/165 (29%)
Query: 3 SQDNKGIIPRLCDSLFDLIAKQESS--------ELTYNPYIR----------TPIRKYEM 44
GIIPR +F+ + + E+ YN + ++ ++
Sbjct: 120 EDPLAGIIPRTLHQIFEKLTDNGTEFSVKVSLLEI-YNEELFDLLNPSSDVSERLQMFDD 178
Query: 45 IYSCRVSMLK----------------MIYGLKA------------SNSTHAVFSVVLTQT 76
+ R ++K + G S S H+VFSV +
Sbjct: 179 PRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRS-HSVFSVTIHMK 237
Query: 77 LVDTKSGVEGEKVARLSLVDLAGSERAVKTGAVGERLKEGSNINK 121
G E K+ +L+LVDLAGSE ++GAV +R +E NIN+
Sbjct: 238 ETTI-DGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQ 281
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule,
ADP, nucleotide-binding protein, ATP-binding, coiled
coil, motor protein; HET: ADP; 1.90A {Drosophila
melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Length = 344
Score = 284 bits (729), Expect = 5e-92
Identities = 59/189 (31%), Positives = 92/189 (48%), Gaps = 18/189 (9%)
Query: 273 DTKSGVEGEKVARLSLVDLAS-EEIDSLMAEGNKSRTVAATNMNSESSRSHAVFSVVLTQ 331
+ + R + + L S ++ ++ G ++R V TNMNS SSRSHA+ ++ +
Sbjct: 171 TPHMPMVAARCQRCTCLPLHSQADLHHILELGTRNRRVRPTNMNSNSSRSHAIVTIHVKS 230
Query: 332 TLVDTKSGVEGEKVARLSLVDLAGSERAVKTGAVGERLKEGSNINKSLTTLGLVISKLAD 391
+R+++VDLAGSE +TG G +EG NIN L ++ V+ +A
Sbjct: 231 K----------THHSRMNIVDLAGSEGVRRTGHEGVARQEGVNINLGLLSINKVVMSMAA 280
Query: 392 STSSSKNKDKFVPYRDSVLTWLLKDNLGGNSKTVMVATVSPAADNYEETLSTLRYADRAK 451
+PYRDSVLT +L+ +L S +A +SP + ETLSTLR+ AK
Sbjct: 281 -------GHTVIPYRDSVLTTVLQASLTAQSYLTFLACISPHQCDLSETLSTLRFGTSAK 333
Query: 452 RIVNHAVDN 460
+
Sbjct: 334 AAALEHHHH 342
Score = 128 bits (324), Expect = 3e-33
Identities = 30/123 (24%), Positives = 51/123 (41%), Gaps = 21/123 (17%)
Query: 194 QVHDLLDPKANKQSLKVREHNVLGPYVDGLSQLAVTSFQEIDSLMAEGNKSRTVAATNMN 253
+ DLL ++ + L + S ++ ++ G ++R V TNMN
Sbjct: 163 KPFDLLGST--------PHMPMVAARCQRCTCLPLHSQADLHHILELGTRNRRVRPTNMN 214
Query: 254 SESSRSHAVFSVVLTQTLVDTKSGVEGEKVARLSLVDLA-SEEIDSLMAEGNKSRTVAAT 312
S SSRSHA+ ++ + +R+++VDLA SE + EG
Sbjct: 215 SNSSRSHAIVTIHVKSK----------THHSRMNIVDLAGSEGVRRTGHEGV--ARQEGV 262
Query: 313 NMN 315
N+N
Sbjct: 263 NIN 265
Score = 95.0 bits (237), Expect = 1e-21
Identities = 29/161 (18%), Positives = 54/161 (33%), Gaps = 61/161 (37%)
Query: 5 DNKGIIPRLCDSLFDLIAKQESSELT-----------YN-----------------PYIR 36
++ GI+PR +F+ + ++ + YN +
Sbjct: 123 EHLGILPRALGDIFERVTARQENNKDAIQVYASFIEIYNEKPFDLLGSTPHMPMVAARCQ 182
Query: 37 ----TPIRKYEMIYSCRVSMLKMIYGLKA------------SNSTHAVFSVVLTQTLVDT 80
P+ ++ + G + S S HA+ ++ +
Sbjct: 183 RCTCLPLHSQADLHHI------LELGTRNRRVRPTNMNSNSSRS-HAIVTIHVKSK---- 231
Query: 81 KSGVEGEKVARLSLVDLAGSERAVKTGAVGERLKEGSNINK 121
+R+++VDLAGSE +TG G +EG NIN
Sbjct: 232 ------THHSRMNIVDLAGSEGVRRTGHEGVARQEGVNINL 266
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A
{Drosophila melanogaster} PDB: 2y5w_A*
Length = 365
Score = 282 bits (724), Expect = 5e-91
Identities = 81/232 (34%), Positives = 113/232 (48%), Gaps = 54/232 (23%)
Query: 294 EEIDSLMAEGNKSRTVAATNMNSESSRSHAVFSVVLTQTLVDTKSGVEGEKVARLSLVDL 353
E++ ++ EG +R +A TNMN SSRSH+VF + + Q ++ + + +L LVDL
Sbjct: 184 EDVFEVIEEGKSNRHIAVTNMNEHSSRSHSVFLINVKQENLEN----QKKLSGKLYLVDL 239
Query: 354 AGSERAVKTGAVGERLKEGSNINKSLTTLGLVISKLADSTSSSKNKDKFVPYRDSVLTWL 413
AGSE+ KTGA G L E NINKSL+ LG VIS LAD + +PYRDS LT +
Sbjct: 240 AGSEKVSKTGAEGTVLDEAKNINKSLSALGNVISALADGNKT------HIPYRDSKLTRI 293
Query: 414 LKDNLGGNSKTVMVATVSPAADNYEETLSTLRYADRAKRIVNHAVDNLGGNSKTVMVATV 473
L+ ++LGGN++T +V
Sbjct: 294 LQ-------------------------------------------ESLGGNARTTIVICC 310
Query: 474 SPAADNYEETLSTLRYADRAKRIVNHAVVNEDPNAR-IIRELRQEVDKLKEM 524
SPA+ N ET STL + RAK + N VNE+ A R +E +K +
Sbjct: 311 SPASFNESETKSTLDFGRRAKTVKNVVCVNEELTAEEWKRRYEKEKEKNARL 362
Score = 137 bits (348), Expect = 3e-36
Identities = 44/123 (35%), Positives = 68/123 (55%), Gaps = 16/123 (13%)
Query: 194 QVHDLLDPKANKQSLKVREHNVLGPYVDGLSQLAVTSFQEIDSLMAEGNKSRTVAATNMN 253
++ DLLD +K +L V E PYV G ++ V+S +++ ++ EG +R +A TNMN
Sbjct: 148 KIRDLLDV--SKVNLSVHEDKNRVPYVKGATERFVSSPEDVFEVIEEGKSNRHIAVTNMN 205
Query: 254 SESSRSHAVFSVVLTQTLVDTKSGVEGEKVARLSLVDLA-SEEIDSLMAEG--------- 303
SSRSH+VF + + Q ++ + + +L LVDLA SE++ AEG
Sbjct: 206 EHSSRSHSVFLINVKQENLEN----QKKLSGKLYLVDLAGSEKVSKTGAEGTVLDEAKNI 261
Query: 304 NKS 306
NKS
Sbjct: 262 NKS 264
Score = 94.2 bits (235), Expect = 4e-21
Identities = 41/170 (24%), Positives = 64/170 (37%), Gaps = 61/170 (35%)
Query: 1 MGSQDNKGIIPRLCDSLFDLIAKQESS----------ELTYN------------------ 32
+G +GIIPR+ + +F+ I E + E+ Y
Sbjct: 106 IGDSVKQGIIPRIVNDIFNHIYAMEVNLEFHIKVSYYEI-YMDKIRDLLDVSKVNLSVHE 164
Query: 33 -----PYIR----TPIRKYEMIYSCRVSMLKMIYGLKA------------SNSTHAVFSV 71
PY++ + E ++ + G S S H+VF +
Sbjct: 165 DKNRVPYVKGATERFVSSPEDVFEV------IEEGKSNRHIAVTNMNEHSSRS-HSVFLI 217
Query: 72 VLTQTLVDTKSGVEGEKVARLSLVDLAGSERAVKTGAVGERLKEGSNINK 121
+ Q ++ + + +L LVDLAGSE+ KTGA G L E NINK
Sbjct: 218 NVKQENLEN----QKKLSGKLYLVDLAGSEKVSKTGAEGTVLDEAKNINK 263
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain;
HET: ADP; 1.60A {Homo sapiens} PDB: 2xt3_A*
Length = 344
Score = 280 bits (718), Expect = 2e-90
Identities = 82/184 (44%), Positives = 113/184 (61%), Gaps = 12/184 (6%)
Query: 273 DTKSGVEGEKVARLSLVDLAS-EEIDSLMAEGNKSRTVAATNMNSESSRSHAVFSVVLTQ 331
D + V + + VD+ +E+ SL+ GN +R AT++N SSRSH VF+V L Q
Sbjct: 168 DERGNV---VLCGVKEVDVEGLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLEQ 224
Query: 332 TLVDT----KSGVEGEKVARLSLVDLAGSERAVKTGAVGERLKEGSNINKSLTTLGLVIS 387
+ V++ VDLAGSER +KTG+ GERLKE IN SL LG VIS
Sbjct: 225 RGRAPSRLPRPAPGQLLVSKFHFVDLAGSERVLKTGSTGERLKESIQINSSLLALGNVIS 284
Query: 388 KLADSTSSSKNKDKFVPYRDSVLTWLLKDNLGGNSKTVMVATVSPAADNYEETLSTLRYA 447
L D + + +PYRDS +T +LKD+LGGN+KTVM+A VSP++ +++ETL+TL YA
Sbjct: 285 ALGDP----QRRGSHIPYRDSKITRILKDSLGGNAKTVMIACVSPSSSDFDETLNTLNYA 340
Query: 448 DRAK 451
RA+
Sbjct: 341 SRAQ 344
Score = 143 bits (362), Expect = 2e-38
Identities = 36/127 (28%), Positives = 59/127 (46%), Gaps = 7/127 (5%)
Query: 194 QVHDLLDPKANKQSLKVREHNVLGPYVDGLSQLAVTSFQEIDSLMAEGNKSRTVAATNMN 253
+ DLL+ + +++RE + G+ ++ V E+ SL+ GN +R AT++N
Sbjct: 149 EFRDLLEVGTASRDIQLREDERGNVVLCGVKEVDVEGLDEVLSLLEMGNAARHTGATHLN 208
Query: 254 SESSRSHAVFSVVLTQTLVDT----KSGVEGEKVARLSLVDLA-SEEIDSLMAEGNKSRT 308
SSRSH VF+V L Q + V++ VDLA SE + + G R
Sbjct: 209 HLSSRSHTVFTVTLEQRGRAPSRLPRPAPGQLLVSKFHFVDLAGSERVLKTGSTGE--RL 266
Query: 309 VAATNMN 315
+ +N
Sbjct: 267 KESIQIN 273
Score = 97.2 bits (243), Expect = 3e-22
Identities = 42/166 (25%), Positives = 58/166 (34%), Gaps = 46/166 (27%)
Query: 2 GSQDNKGIIPRLCDSLFDLIAKQESSELT--------YNPYIR---------TPIRKYEM 44
+D +GI+PR F LI + + + Y R I+ E
Sbjct: 109 LLEDEQGIVPRAMAEAFKLIDENDLLDCLVHVSYLEVYKEEFRDLLEVGTASRDIQLRED 168
Query: 45 ----IY-----SCRVSMLKMIYGL---------KAS---NST----HAVFSVVLTQTLVD 79
+ V L + L + N H VF+V L Q
Sbjct: 169 ERGNVVLCGVKEVDVEGLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLEQRGRA 228
Query: 80 T----KSGVEGEKVARLSLVDLAGSERAVKTGAVGERLKEGSNINK 121
+ V++ VDLAGSER +KTG+ GERLKE IN
Sbjct: 229 PSRLPRPAPGQLLVSKFHFVDLAGSERVLKTGSTGERLKESIQINS 274
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics,
structural genomics consortium, SGC, contractIle
protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Length = 358
Score = 275 bits (706), Expect = 2e-88
Identities = 66/160 (41%), Positives = 91/160 (56%), Gaps = 8/160 (5%)
Query: 294 EEIDSLMAEGNKSRTVAATNMNSESSRSHAVFSVVLTQTLVDTKSGVEGEKVARLSLVDL 353
E+ SL+ EG +R +A+ MN SSRSH +F++ L E ++++LVDL
Sbjct: 207 EDAFSLLFEGETNRIIASHTMNKNSSRSHCIFTIYLEAH--SRTLSEEKYITSKINLVDL 264
Query: 354 AGSERAVKTGAVGERLKEGSNINKSLTTLGLVISKLADSTSSSKNKDKFVPYRDSVLTWL 413
AGSER K+G+ G+ LKE + INKSL+ L I L D K +P+R LT
Sbjct: 265 AGSERLGKSGSEGQVLKEATYINKSLSFLEQAIIALGD------QKRDHIPFRQCKLTHA 318
Query: 414 LKDNLGGNSKTVMVATVSPAADNYEETLSTLRYADRAKRI 453
LKD+LGGN V+V + A EETLS+LR+A R K +
Sbjct: 319 LKDSLGGNCNMVLVTNIYGEAAQLEETLSSLRFASRMKLV 358
Score = 95.4 bits (238), Expect = 1e-21
Identities = 40/169 (23%), Positives = 70/169 (41%), Gaps = 50/169 (29%)
Query: 1 MGSQDN---KGIIPRLCDSLFDLIAKQESSELT--------YN----------PYIRTPI 39
MG+ +N +GI+PR +F +I ++ + +T YN PY+ +
Sbjct: 122 MGATENYKHRGILPRALQQVFRMIEERPTHAITVRVSYLEIYNESLFDLLSTLPYVGPSV 181
Query: 40 RKYEM------IY-----SCRVSMLKMIYGL----------------KASNSTHAVFSVV 72
+ ++ S + + L K S+ +H +F++
Sbjct: 182 TPMTIVENPQGVFIKGLSVHLTSQEEDAFSLLFEGETNRIIASHTMNKNSSRSHCIFTIY 241
Query: 73 LTQTLVDTKSGVEGEKVARLSLVDLAGSERAVKTGAVGERLKEGSNINK 121
L E ++++LVDLAGSER K+G+ G+ LKE + INK
Sbjct: 242 LEAH--SRTLSEEKYITSKINLVDLAGSERLGKSGSEGQVLKEATYINK 288
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP;
1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A*
2kin_A* 3kin_A*
Length = 325
Score = 274 bits (703), Expect = 2e-88
Identities = 75/160 (46%), Positives = 98/160 (61%), Gaps = 11/160 (6%)
Query: 294 EEIDSLMAEGNKSRTVAATNMNSESSRSHAVFSVVLTQTLVDTKSGVEGEKVARLSLVDL 353
+E+ + EG +R VA TNMN SSRSH++F + + Q T E + +L LVDL
Sbjct: 177 DEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQT----EQKLSGKLYLVDL 232
Query: 354 AGSERAVKTGAVGERLKEGSNINKSLTTLGLVISKLADSTSSSKNKDKFVPYRDSVLTWL 413
AGSE+ KTGA G L E NINKSL+ LG VIS LA+ +VPYRDS +T +
Sbjct: 233 AGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAE-------GSTYVPYRDSKMTRI 285
Query: 414 LKDNLGGNSKTVMVATVSPAADNYEETLSTLRYADRAKRI 453
L+D+LGGN +T +V SP++ N ET STL + RAK I
Sbjct: 286 LQDSLGGNCRTTIVICCSPSSYNESETKSTLLFGQRAKTI 325
Score = 94.6 bits (236), Expect = 1e-21
Identities = 41/163 (25%), Positives = 63/163 (38%), Gaps = 47/163 (28%)
Query: 1 MGSQDNKGIIPRLCDSLFDLIAKQESS----------ELTYNPYIR-------TPIRKYE 43
+ + GIIPR+ +F+ I + + E+ Y IR T + +E
Sbjct: 99 LHDPEGMGIIPRIVQDIFNYIYSMDENLEFHIKVSYFEI-YLDKIRDLLDVSKTNLSVHE 157
Query: 44 ----MIY-----SCRVSMLKMIYGL----------------KASNSTHAVFSVVLTQTLV 78
+ Y V + + S+ +H++F + + Q
Sbjct: 158 DKNRVPYVKGCTERFVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENT 217
Query: 79 DTKSGVEGEKVARLSLVDLAGSERAVKTGAVGERLKEGSNINK 121
T E + +L LVDLAGSE+ KTGA G L E NINK
Sbjct: 218 QT----EQKLSGKLYLVDLAGSEKVSKTGAEGAVLDEAKNINK 256
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis,
GTP-binding, motor protein, cell division, cell cycle,
microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A
{Drosophila melanogaster}
Length = 373
Score = 274 bits (704), Expect = 6e-88
Identities = 77/168 (45%), Positives = 105/168 (62%), Gaps = 9/168 (5%)
Query: 294 EEIDSLMAEGNKSRTVAATNMNSESSRSHAVFSVVLTQTLVDTKSGVEGEKVARLSLVDL 353
+++ L+ +G + R A T MN++SSRSH VFS+V+ G + K+ +L+LVDL
Sbjct: 209 DDVYKLLEKGKERRKTATTLMNAQSSRSHTVFSIVVHIRENGI-EGEDMLKIGKLNLVDL 267
Query: 354 AGSERAVKTG-AVGERLKEGSNINKSLTTLGLVISKLADSTSSSKNKDKFVPYRDSVLTW 412
AGSE K G G R++E NIN+SL TLG VI+ L D + VPYR+S LT
Sbjct: 268 AGSENVSKAGNEKGIRVRETVNINQSLLTLGRVITALVD-------RAPHVPYRESKLTR 320
Query: 413 LLKDNLGGNSKTVMVATVSPAADNYEETLSTLRYADRAKRIVNHAVDN 460
LL+++LGG +KT ++AT+SP + EETLSTL YA RAK I N N
Sbjct: 321 LLQESLGGRTKTSIIATISPGHKDIEETLSTLEYAHRAKNIQNKPEVN 368
Score = 88.1 bits (219), Expect = 5e-19
Identities = 43/171 (25%), Positives = 60/171 (35%), Gaps = 60/171 (35%)
Query: 2 GSQDNKGIIPRLCDSLFDLIAKQESS--------ELTYN--------------------- 32
+ GIIPR LFD + E EL YN
Sbjct: 131 EDDSDIGIIPRALSHLFDELRMMEVEYTMRISYLEL-YNEELCDLLSTDDTTKIRIFDDS 189
Query: 33 -----PYIR----TPIRKYEMIYSCRVSMLKMIYGLKA------------SNSTHAVFSV 71
I+ P+ + +Y + G + S S H VFS+
Sbjct: 190 TKKGSVIIQGLEEIPVHSKDDVYKL------LEKGKERRKTATTLMNAQSSRS-HTVFSI 242
Query: 72 VLTQTLVDTKSGVEGEKVARLSLVDLAGSERAVKTG-AVGERLKEGSNINK 121
V+ G + K+ +L+LVDLAGSE K G G R++E NIN+
Sbjct: 243 VVHIRENGI-EGEDMLKIGKLNLVDLAGSENVSKAGNEKGIRVRETVNINQ 292
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P;
HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB:
1v8j_A* 2gry_A*
Length = 410
Score = 266 bits (681), Expect = 6e-84
Identities = 66/191 (34%), Positives = 98/191 (51%), Gaps = 22/191 (11%)
Query: 273 DTKSGVEGEKVARLSLVDLAS-EEIDSLMAEGNKSRTVAATNMNSESSRSHAVFSVVLTQ 331
D++ V +V L + +++ ++ G+ RT T NS SSRSHA F ++L
Sbjct: 238 DSRQQV---QVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLRT 294
Query: 332 TLVDTKSGVEGEKVARLSLVDLAGSERAVKTGAVGERLK-EGSNINKSLTTLGLVISKLA 390
G + SLVDLAG+ER T + + + EG+ INKSL L I L
Sbjct: 295 K---------GRLHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALG 345
Query: 391 DSTSSSKNKDKFVPYRDSVLTWLLKDN-LGGNSKTVMVATVSPAADNYEETLSTLRYADR 449
P+R+S LT +L+D+ +G NS+T M+A +SP + E TL+TLRYADR
Sbjct: 346 Q-------NKAHTPFRESKLTQVLRDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADR 398
Query: 450 AKRIVNHAVDN 460
K + +H +
Sbjct: 399 VKELSHHHHHH 409
Score = 129 bits (327), Expect = 4e-33
Identities = 41/124 (33%), Positives = 55/124 (44%), Gaps = 23/124 (18%)
Query: 194 QVHDLLDPKANKQSLKVREHNVLGPYVDGLSQLAVTSFQEIDSLMAEGNKSRTVAATNMN 253
+V DLL+ KA L+V E + V GL + VT ++ ++ G+ RT T N
Sbjct: 222 KVFDLLNKKAK---LRVLEDSRQQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFAN 278
Query: 254 SESSRSHAVFSVVLTQTLVDTKSGVEGEKVARLSLVDLA-SEEIDS-------LMAEG-- 303
S SSRSHA F ++L G + SLVDLA +E EG
Sbjct: 279 SNSSRSHACFQILLRTK---------GRLHGKFSLVDLAGNERGADTSSADRQTRMEGAE 329
Query: 304 -NKS 306
NKS
Sbjct: 330 INKS 333
Score = 86.5 bits (215), Expect = 2e-18
Identities = 37/161 (22%), Positives = 55/161 (34%), Gaps = 51/161 (31%)
Query: 3 SQDNKGIIPRLCDSLFDLIAKQESSELT----------YNPYIR------TPIRKYE--- 43
+KGI +F L + L YN + +R E
Sbjct: 181 QNASKGIYAMASRDVFLLKNQPRYRNLNLEVYVTFFEIYNGKVFDLLNKKAKLRVLEDSR 240
Query: 44 -MIY-----SCRVS----MLKMI-YGLK-------ASNST----HAVFSVVLTQTLVDTK 81
+ V+ ++KMI G +NS HA F ++L
Sbjct: 241 QQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLRTK----- 295
Query: 82 SGVEGEKVARLSLVDLAGSERAVKTGAVGERLK-EGSNINK 121
G + SLVDLAG+ER T + + + EG+ INK
Sbjct: 296 ----GRLHGKFSLVDLAGNERGADTSSADRQTRMEGAEINK 332
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics,
structural genomics consortium, SGC, structural protein;
HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Length = 387
Score = 264 bits (678), Expect = 7e-84
Identities = 69/188 (36%), Positives = 98/188 (52%), Gaps = 22/188 (11%)
Query: 273 DTKSGVEGEKVARLSLVDLAS-EEIDSLMAEGNKSRTVAATNMNSESSRSHAVFSVVLTQ 331
D K V +V L + S +++ ++ G+ RT T NS SSRSHA F ++L
Sbjct: 218 DGKQQV---QVVGLQEHLVNSADDVIKMIDMGSACRTSGQTFANSNSSRSHACFQIILRA 274
Query: 332 TLVDTKSGVEGEKVARLSLVDLAGSERAVKTGAVGERLK-EGSNINKSLTTLGLVISKLA 390
G + SLVDLAG+ER T + + + EG+ INKSL L I L
Sbjct: 275 K---------GRMHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALG 325
Query: 391 DSTSSSKNKDKFVPYRDSVLTWLLKDN-LGGNSKTVMVATVSPAADNYEETLSTLRYADR 449
P+R+S LT +L+D+ +G NS+T M+AT+SP + E TL+TLRYADR
Sbjct: 326 Q-------NKAHTPFRESKLTQVLRDSFIGENSRTCMIATISPGISSCEYTLNTLRYADR 378
Query: 450 AKRIVNHA 457
K + H+
Sbjct: 379 VKELSPHS 386
Score = 130 bits (328), Expect = 2e-33
Identities = 37/123 (30%), Positives = 55/123 (44%), Gaps = 14/123 (11%)
Query: 194 QVHDLLDPKANKQSLKVREHNVLGPYVDGLSQLAVTSFQEIDSLMAEGNKSRTVAATNMN 253
++ DLL+ K L+V E V GL + V S ++ ++ G+ RT T N
Sbjct: 202 KLFDLLNKK---AKLRVLEDGKQQVQVVGLQEHLVNSADDVIKMIDMGSACRTSGQTFAN 258
Query: 254 SESSRSHAVFSVVLTQTLVDTKSGVEGEKVARLSLVDLA-SEEIDSLMAEGNKSRTVAAT 312
S SSRSHA F ++L G + SLVDLA +E + ++R A
Sbjct: 259 SNSSRSHACFQIILRAK---------GRMHGKFSLVDLAGNERGADTSSADRQTRMEGA- 308
Query: 313 NMN 315
+N
Sbjct: 309 EIN 311
Score = 85.8 bits (213), Expect = 3e-18
Identities = 37/162 (22%), Positives = 56/162 (34%), Gaps = 51/162 (31%)
Query: 2 GSQDNKGIIPRLCDSLFDLIAKQESSELT----------YNPYIR------TPIRKYE-- 43
+KGI +F L + +L YN + +R E
Sbjct: 160 AQNASKGIYAMASRDVFLLKNQPCYRKLGLEVYVTFFEIYNGKLFDLLNKKAKLRVLEDG 219
Query: 44 --MIY-----SCRVS----MLKMI-YGLK-------ASNST----HAVFSVVLTQTLVDT 80
+ V+ ++KMI G +NS HA F ++L
Sbjct: 220 KQQVQVVGLQEHLVNSADDVIKMIDMGSACRTSGQTFANSNSSRSHACFQIILRAK---- 275
Query: 81 KSGVEGEKVARLSLVDLAGSERAVKTGAVGERLK-EGSNINK 121
G + SLVDLAG+ER T + + + EG+ INK
Sbjct: 276 -----GRMHGKFSLVDLAGNERGADTSSADRQTRMEGAEINK 312
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing
nucleosi triphosphate hydrolases, microtubule motor
protein; HET: ADP; 2.35A {Ashbya gossypii}
Length = 349
Score = 263 bits (675), Expect = 7e-84
Identities = 63/176 (35%), Positives = 103/176 (58%), Gaps = 9/176 (5%)
Query: 283 VARLSLVDLAS-EEIDSLMAEGNKSRTVAATNMNSESSRSHAVFSVVLTQTLVDTKSGVE 341
+ ++ + + S ++D+++ + +K R+ AAT N SSRSH+VF V + + +G
Sbjct: 181 ITNVTRMKMTSTSQVDTILKKASKMRSTAATRSNERSSRSHSVFMVHINGR--NLHTGET 238
Query: 342 GEKVARLSLVDLAGSERAVKTGAVGERLKEGSNINKSLTTLGLVISKLADSTSSSKNKDK 401
+L+LVDLAGSER + GERL+E NINKSL+ LG VI L + +
Sbjct: 239 --SQGKLNLVDLAGSERINSSAVTGERLRETQNINKSLSCLGDVIYALNTPDAGKR---- 292
Query: 402 FVPYRDSVLTWLLKDNLGGNSKTVMVATVSPAADNYEETLSTLRYADRAKRIVNHA 457
++P+R+S LT+LL+ +L G+SKT+M + P ++ ETL++LR+A +
Sbjct: 293 YIPFRNSKLTYLLQYSLVGDSKTLMFVNIPPDPNHISETLNSLRFASKVNSTKIAK 348
Score = 86.9 bits (216), Expect = 1e-18
Identities = 39/175 (22%), Positives = 61/175 (34%), Gaps = 60/175 (34%)
Query: 1 MGSQDNKGIIPRLCDSLFDLIAKQESSELT----------YNPYIR-------------- 36
+ + D G+IP +F A + YN I
Sbjct: 104 LNAGD--GMIPMTLSHIFKWTANLKERGWNYEMECEYIEIYNETILDLLRDFKSHDNIDE 161
Query: 37 -TPIRKYE--------MIY-----SCRVSMLKMIYGL--KASN-----ST---------H 66
+K++ Y +++ + + KAS +T H
Sbjct: 162 ILDSQKHDIRHDHEKQGTYITNVTRMKMTSTSQVDTILKKASKMRSTAATRSNERSSRSH 221
Query: 67 AVFSVVLTQTLVDTKSGVEGEKVARLSLVDLAGSERAVKTGAVGERLKEGSNINK 121
+VF V + + +G +L+LVDLAGSER + GERL+E NINK
Sbjct: 222 SVFMVHINGR--NLHTGET--SQGKLNLVDLAGSERINSSAVTGERLRETQNINK 272
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11,
conformation, nucleotide, ATP-binding, microtubule,
motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP:
c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Length = 369
Score = 261 bits (669), Expect = 1e-82
Identities = 80/254 (31%), Positives = 123/254 (48%), Gaps = 60/254 (23%)
Query: 273 DTKSGVEGEKVARLSLVDLAS-EEIDSLMAEGNKSRTVAATNMNSESSRSHAVFSVVLTQ 331
D+K V V +++V +++ EE+ +++ G++ R T MN +SSRSH + SV++
Sbjct: 160 DSKGMVS---VENVTVVSISTYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIES 216
Query: 332 TLVDTKSGVEGEKVARLSLVDLAGSERAVKTGAVGERLKEGSNINKSLTTLGLVISKLAD 391
T + T + +LS VDLAGSER K+G+ G +LKE +INKSL+ LG VIS L+
Sbjct: 217 TNLQT----QAIARGKLSFVDLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVISALSS 272
Query: 392 STSSSKNKDKFVPYRDSVLTWLLKDNLGGNSKTVMVATVSPAADNYEETLSTLRYADRAK 451
++ +PYR+ LT L+
Sbjct: 273 -------GNQHIPYRNHKLTMLMS------------------------------------ 289
Query: 452 RIVNHAVDNLGGNSKTVMVATVSPAADNYEETLSTLRYADRAKRIVNHAVVNEDPNARII 511
D+LGGN+KT+M +SPA N +ET ++L YA R + IVN N + +
Sbjct: 290 -------DSLGGNAKTLMFVNISPAESNLDETHNSLTYASRVRSIVNDPSKNVSS--KEV 340
Query: 512 RELRQEVDKLKEML 525
L++ V KE
Sbjct: 341 ARLKKLVSYWKEQA 354
Score = 87.3 bits (217), Expect = 8e-19
Identities = 40/166 (24%), Positives = 63/166 (37%), Gaps = 50/166 (30%)
Query: 1 MGSQDNKGIIPRLCDSLFDLIAKQESS----------ELTYNPYIR-------TPIRKYE 43
G+ N G+ PR LF ++ K + EL Y + K +
Sbjct: 98 YGADSNPGLTPRAMSELFRIMKKDSNKFSFSLKAYMVEL-YQDTLVDLLLPKQAKRLKLD 156
Query: 44 -------MIY-----SCRVSMLKMIYGL--KASN-----ST---------HAVFSVVLTQ 75
M+ +S + + + + S T H + SV++
Sbjct: 157 IKKDSKGMVSVENVTVVSISTYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIES 216
Query: 76 TLVDTKSGVEGEKVARLSLVDLAGSERAVKTGAVGERLKEGSNINK 121
T + T + +LS VDLAGSER K+G+ G +LKE +INK
Sbjct: 217 TNLQT----QAIARGKLSFVDLAGSERVKKSGSAGNQLKEAQSINK 258
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport
protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Length = 360
Score = 260 bits (667), Expect = 1e-82
Identities = 59/190 (31%), Positives = 98/190 (51%), Gaps = 19/190 (10%)
Query: 273 DTKSGVEGEKVARLSLVDLAS-EEIDSLMAEGNKSRTVAATNMNSESSRSHAVFSVVLTQ 331
+ K V V L ++ + + EE+ M +G R + + N ESSRSHA+ ++ L
Sbjct: 166 NGKKEV---VVKDLKILRVLTKEELILKMIDGVLLRKIGVNSQNDESSRSHAILNIDLKD 222
Query: 332 TLVDTKSGVEGEKVARLSLVDLAGSERAVKTGAVGERLK-EGSNINKSLTTLGLVISKLA 390
+ + +++ +DLAGSER T + ++ + +G+NIN+SL L I +
Sbjct: 223 -------INKNTSLGKIAFIDLAGSERGADTVSQNKQTQTDGANINRSLLALKECIRAMD 275
Query: 391 DSTSSSKNKDKFVPYRDSVLTWLLKDNLGGNSKTVMVATVSPAADNYEETLSTLRYADRA 450
+P+RDS LT +L+D G SK++M+A +SP E+TL+TLRY+ R
Sbjct: 276 S-------DKNHIPFRDSELTKVLRDIFVGKSKSIMIANISPTISCCEQTLNTLRYSSRV 328
Query: 451 KRIVNHAVDN 460
K N ++
Sbjct: 329 KNKGNSKLEG 338
Score = 125 bits (316), Expect = 6e-32
Identities = 30/123 (24%), Positives = 58/123 (47%), Gaps = 12/123 (9%)
Query: 194 QVHDLLDPKANKQSLKVREHNVLGPYVDGLSQLAVTSFQEIDSLMAEGNKSRTVAATNMN 253
+++DLL + + E+ V L L V + +E+ M +G R + + N
Sbjct: 150 KLYDLLQKRKM---VAALENGKKEVVVKDLKILRVLTKEELILKMIDGVLLRKIGVNSQN 206
Query: 254 SESSRSHAVFSVVLTQTLVDTKSGVEGEKVARLSLVDLA-SEEIDSLMAEGNKSRTVAAT 312
ESSRSHA+ ++ L + + +++ +DLA SE +++ +++T A
Sbjct: 207 DESSRSHAILNIDLKD-------INKNTSLGKIAFIDLAGSERGADTVSQNKQTQTDGA- 258
Query: 313 NMN 315
N+N
Sbjct: 259 NIN 261
Score = 81.9 bits (203), Expect = 4e-17
Identities = 30/161 (18%), Positives = 54/161 (33%), Gaps = 48/161 (29%)
Query: 2 GSQDNKGIIPRLCDSLFDLIAKQESSELT---------YNPYIR------TPIRKYE--- 43
G D GI +F + + Y + + E
Sbjct: 109 GQSDTPGIFQYAAGDIFTFLNIYDKDNTKGIFISFYEIYCGKLYDLLQKRKMVAALENGK 168
Query: 44 -MIY-----SCRVS-----MLKMIYGLKA-------SNST----HAVFSVVLTQTLVDTK 81
+ RV +LKMI G+ N HA+ ++ L
Sbjct: 169 KEVVVKDLKILRVLTKEELILKMIDGVLLRKIGVNSQNDESSRSHAILNIDLKD------ 222
Query: 82 SGVEGEKVARLSLVDLAGSERAVKTGAVGERLK-EGSNINK 121
+ + +++ +DLAGSER T + ++ + +G+NIN+
Sbjct: 223 -INKNTSLGKIAFIDLAGSERGADTVSQNKQTQTDGANINR 262
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein,
microtubinding proteinbule, contractIle protein; HET:
ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9
PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Length = 347
Score = 258 bits (661), Expect = 7e-82
Identities = 65/176 (36%), Positives = 105/176 (59%), Gaps = 9/176 (5%)
Query: 283 VARLSLVDLAS-EEIDSLMAEGNKSRTVAATNMNSESSRSHAVFSVVLTQTLVDTKSGVE 341
+ ++ L S E ++ ++ + NK R+ A+T N SS SH++F + L+ + + K+G
Sbjct: 178 ITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSASHSIFIIHLSGS--NAKTG-- 233
Query: 342 GEKVARLSLVDLAGSERAVKTGAVGERLKEGSNINKSLTTLGLVISKLADSTSSSKNKDK 401
L+LVDLAGSER + VG+RL+E NINKSL+ LG VI L S +
Sbjct: 234 AHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDS----TKR 289
Query: 402 FVPYRDSVLTWLLKDNLGGNSKTVMVATVSPAADNYEETLSTLRYADRAKRIVNHA 457
+P+R+S LT+LL+ +L G+SKT+M +SP++ + ETL++LR+A + +
Sbjct: 290 HIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRLVS 345
Score = 86.1 bits (214), Expect = 1e-18
Identities = 43/169 (25%), Positives = 66/169 (39%), Gaps = 56/169 (33%)
Query: 5 DNKGIIPRLCDSLFDLIAKQESSELT----------YNPYIR-------------TPIRK 41
GIIP +F+ I K ++ YN I + K
Sbjct: 105 PGDGIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLK 164
Query: 42 YE--------MIY-----SCRVSMLKMIYGL--KASN-----ST---------HAVFSVV 72
+E SC++ +M+ + KA+ ST H++F +
Sbjct: 165 HEIRHDQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSASHSIFIIH 224
Query: 73 LTQTLVDTKSGVEGEKVARLSLVDLAGSERAVKTGAVGERLKEGSNINK 121
L+ + + K+G L+LVDLAGSER + VG+RL+E NINK
Sbjct: 225 LSGS--NAKTG--AHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINK 269
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor
domain, ADP, binding, cell cycle, cell division,
endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Length = 376
Score = 249 bits (637), Expect = 6e-78
Identities = 72/182 (39%), Positives = 109/182 (59%), Gaps = 16/182 (8%)
Query: 276 SGVEGEKVARLSLVDLAS-EEIDSLMAEGNKSRTVAATNMNSESSRSHAVFSVVLTQTLV 334
G E V V ++ +E+D+L+ ++R VA T N SSRSH+VF + ++
Sbjct: 205 PGSEELTVTNARYVPVSCEKEVDALLHLARQNRAVARTAQNERSSRSHSVFQLQISGE-- 262
Query: 335 DTKSGVEGEKVARLSLVDLAGSERAVKTGAVG----ERLKEGSNINKSLTTLGLVISKLA 390
+ G++ A LSLVDLAGSER A+G ERL+E IN SL+TLGLVI L+
Sbjct: 263 HSSRGLQ--CGAPLSLVDLAGSERLDPGLALGPGERERLRETQAINSSLSTLGLVIMALS 320
Query: 391 DSTSSSKNKDKFVPYRDSVLTWLLKDNLGGNSKTVMVATVSPAADNYEETLSTLRYADRA 450
+ K+ VPYR+S LT+LL+++LGG++K +M +SP +N E+L++LR+A +
Sbjct: 321 N-------KESHVPYRNSKLTYLLQNSLGGSAKMLMFVNISPLEENVSESLNSLRFASKV 373
Query: 451 KR 452
+
Sbjct: 374 NQ 375
Score = 80.0 bits (198), Expect = 2e-16
Identities = 42/173 (24%), Positives = 59/173 (34%), Gaps = 57/173 (32%)
Query: 2 GSQDNKGIIPRLCDSLFDLIAKQESSELT----------YNPYIR---------TPIRKY 42
G +G+IPR LF + + T YN +R +
Sbjct: 139 GDPQLEGLIPRALRHLFSVAQELSGQGWTYSFVASYVEIYNETVRDLLATGTRKGQGGEC 198
Query: 43 EM--------------IYSCRVSMLKMIYGL--KASN-----ST---------HAVFSVV 72
E+ VS K + L A T H+VF +
Sbjct: 199 EIRRAGPGSEELTVTNARYVPVSCEKEVDALLHLARQNRAVARTAQNERSSRSHSVFQLQ 258
Query: 73 LTQTLVDTKSGVEGEKVARLSLVDLAGSERAVKTGAVG----ERLKEGSNINK 121
++ + G++ A LSLVDLAGSER A+G ERL+E IN
Sbjct: 259 ISGE--HSSRGLQ--CGAPLSLVDLAGSERLDPGLALGPGERERLRETQAINS 307
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor
homology domain, karyog mitosis, microtubules; HET: ADP
EBC; 2.30A {Saccharomyces cerevisiae}
Length = 403
Score = 250 bits (640), Expect = 6e-78
Identities = 67/176 (38%), Positives = 107/176 (60%), Gaps = 9/176 (5%)
Query: 283 VARLSLVDLAS-EEIDSLMAEGNKSRTVAATNMNSESSRSHAVFSVVLTQTLVDTKSGVE 341
+ ++ V L S E ++ ++ + NK R+ A+T N SSRSH++F + L+ + + K+G
Sbjct: 234 ITNVTSVKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGS--NAKTG-- 289
Query: 342 GEKVARLSLVDLAGSERAVKTGAVGERLKEGSNINKSLTTLGLVISKLADSTSSSKNKDK 401
L+LVDLAGSER + VG+RL+E NINKSL+ LG VI L S +
Sbjct: 290 AHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSALGDVIHALGQPDS----TKR 345
Query: 402 FVPYRDSVLTWLLKDNLGGNSKTVMVATVSPAADNYEETLSTLRYADRAKRIVNHA 457
+P+R+S LT+LL+ +L G+SKT+M +SP++ + ETL++LR+A + +
Sbjct: 346 HIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRLVS 401
Score = 81.5 bits (202), Expect = 7e-17
Identities = 42/169 (24%), Positives = 65/169 (38%), Gaps = 56/169 (33%)
Query: 5 DNKGIIPRLCDSLFDLIAKQESSELT----------YNPYIR-------------TPIRK 41
GIIP +F+ I K ++ YN I + K
Sbjct: 161 PGDGIIPSTISHIFNWINKLKTKGWDYKVNAEFIEIYNENIVDLLRSDNNNKEDTSIGLK 220
Query: 42 YE--------MIY-----SCRVSMLKMIYGL--KASN-----ST---------HAVFSVV 72
+E S ++ +M+ + KA+ ST H++F +
Sbjct: 221 HEIRHDQETKTTTITNVTSVKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIH 280
Query: 73 LTQTLVDTKSGVEGEKVARLSLVDLAGSERAVKTGAVGERLKEGSNINK 121
L+ + + K+G L+LVDLAGSER + VG+RL+E NINK
Sbjct: 281 LSGS--NAKTG--AHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINK 325
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural
genomics, structur Al genomics consortium, SGC; HET:
ADP; 1.85A {Homo sapiens}
Length = 330
Score = 246 bits (631), Expect = 1e-77
Identities = 73/182 (40%), Positives = 108/182 (59%), Gaps = 15/182 (8%)
Query: 273 DTKSGVEGEKVARLSLVDLAS-EEIDSLMAEGNKSRTVAATNMNSESSRSHAVFSVVLTQ 331
D + V L+ + S ++I+ + G+ +RT TN+N SSRSHA+ V +
Sbjct: 161 DGSGQLY---VPGLTEFQVQSVDDINKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTVRG 217
Query: 332 TLVDTKSGVEGEKVARLSLVDLAGSERAVKTGAVGERLKEGSNINKSLTTLGLVISKLAD 391
D +G+ +L+LVDLAGSER K+GA G RL+E +INKSL+ LG VI+ L
Sbjct: 218 V--DCSTGLR--TTGKLNLVDLAGSERVGKSGAEGSRLREAQHINKSLSALGDVIAALRS 273
Query: 392 STSSSKNKDKFVPYRDSVLTWLLKDNLGGNSKTVMVATVSPAADNYEETLSTLRYADRAK 451
+ VP+R+S LT+LL+D+L G+SKT+MV VSP N ETL +L++A+R +
Sbjct: 274 -------RQGHVPFRNSKLTYLLQDSLSGDSKTLMVVQVSPVEKNTSETLYSLKFAERVR 326
Query: 452 RI 453
+
Sbjct: 327 SV 328
Score = 86.0 bits (214), Expect = 1e-18
Identities = 44/166 (26%), Positives = 64/166 (38%), Gaps = 50/166 (30%)
Query: 1 MGSQDNKGIIPRLCDSLFDLIAKQESS----------ELTYNPYIR-----TPIRKYE-- 43
G+ +N GI R LF + ++ S E+ YN +R P K E
Sbjct: 99 EGTAENPGINQRALQLLFSEVQEKASDWEYTITVSAAEI-YNEVLRDLLGKEPQEKLEIR 157
Query: 44 -------MIY-----SCRVSMLKMIYGL--KASN-----ST---------HAVFSVVLTQ 75
+Y +V + I + T HA+ V +
Sbjct: 158 LCPDGSGQLYVPGLTEFQVQSVDDINKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTVRG 217
Query: 76 TLVDTKSGVEGEKVARLSLVDLAGSERAVKTGAVGERLKEGSNINK 121
D +G+ +L+LVDLAGSER K+GA G RL+E +INK
Sbjct: 218 V--DCSTGLR--TTGKLNLVDLAGSERVGKSGAEGSRLREAQHINK 259
>3u06_A Protein claret segregational; motor domain, stalk rotation, power
stroke, kinesin-14, MICR binding, NCD, transport,
molecular motor; HET: ADP GOL; 2.35A {Drosophila
melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Length = 412
Score = 228 bits (584), Expect = 1e-69
Identities = 63/190 (33%), Positives = 92/190 (48%), Gaps = 20/190 (10%)
Query: 273 DTKSGVEGEKVARLSLVDLAS-EEIDSLMAEGNKSRTVAATNMNSESSRSHAVFSVVLTQ 331
+ K+ + V+ ++ + + LM +R A+T N SSRSHAV + L
Sbjct: 219 NNKNDIY---VSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIG 275
Query: 332 TLVDTKSGVEGEKVARLSLVDLAGSERAVKTGAVGERLKEGSNINKSLTTLGLVISKLAD 391
+ + G ++LVDLAGSE R+ E NIN+SL+ L VI L
Sbjct: 276 RHAEKQEISVG----SINLVDLAGSES----PKTSTRMTETKNINRSLSELTNVILALLQ 327
Query: 392 STSSSKNKDKFVPYRDSVLTWLLKDNLGGNSKTVMVATVSPAADNYEETLSTLRYADRAK 451
K +PYR+S LT LL +LGGNSKT+M VSP D ++E++ +LR+A
Sbjct: 328 -------KQDHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVN 380
Query: 452 RI-VNHAVDN 460
+ A N
Sbjct: 381 SCKMTKAKRN 390
Score = 113 bits (284), Expect = 3e-27
Identities = 29/102 (28%), Positives = 48/102 (47%), Gaps = 5/102 (4%)
Query: 194 QVHDLLDPKANKQSLKVREHNVLGPYVDGLSQLAVTSFQEIDSLMAEGNKSRTVAATNMN 253
++DLL + +++ ++N YV +++ V + LM +R A+T N
Sbjct: 200 VLYDLLSNEQKDMEIRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGN 259
Query: 254 SESSRSHAVFSVVLTQTLVDTKSGVEGEKVARLSLVDLA-SE 294
SSRSHAV + L + + G ++LVDLA SE
Sbjct: 260 ERSSRSHAVTKLELIGRHAEKQEISVG----SINLVDLAGSE 297
Score = 73.8 bits (182), Expect = 3e-14
Identities = 39/165 (23%), Positives = 53/165 (32%), Gaps = 52/165 (31%)
Query: 1 MGSQDNKGIIPRLCDSLFDLIAKQESSELT----------YNPYIR---------TPIRK 41
G ++ G+IPR D LFD I + YN + IR
Sbjct: 157 DGVPESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRM 216
Query: 42 YE----MIY-----SCRVSMLKMIYGL--KASN-----ST---------HAVFSVVLTQT 76
+ IY V + L A ST HAV + L
Sbjct: 217 AKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGR 276
Query: 77 LVDTKSGVEGEKVARLSLVDLAGSERAVKTGAVGERLKEGSNINK 121
+ + G ++LVDLAGSE R+ E NIN+
Sbjct: 277 HAEKQEISVG----SINLVDLAGSES----PKTSTRMTETKNINR 313
>2kin_B Kinesin; motor protein, cytoskeleton; HET: ADP; 2.00A {Rattus
norvegicus} SCOP: c.37.1.9
Length = 100
Score = 136 bits (344), Expect = 8e-39
Identities = 41/88 (46%), Positives = 51/88 (57%), Gaps = 6/88 (6%)
Query: 373 SNINKSLTTLGLVISKLADSTSSSKNKDKFVPYRDSVLTWLLKDNLGGNSKTVMVATVSP 432
NINKSL+ LG VIS LA+ VPYRDS +T +L+D+L GN +T +V SP
Sbjct: 2 KNINKSLSALGNVISALAE------GTKTHVPYRDSKMTRILQDSLDGNCRTTIVICCSP 55
Query: 433 AADNYEETLSTLRYADRAKRIVNHAVDN 460
+ N ET STL + RAK I N N
Sbjct: 56 SVFNEAETKSTLMFGQRAKTIKNTVSVN 83
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A
{Rattus norvegicus} SCOP: c.37.1.9
Length = 117
Score = 132 bits (335), Expect = 3e-37
Identities = 40/85 (47%), Positives = 50/85 (58%), Gaps = 6/85 (7%)
Query: 376 NKSLTTLGLVISKLADSTSSSKNKDKFVPYRDSVLTWLLKDNLGGNSKTVMVATVSPAAD 435
NKSL+ LG VIS LA+ VPYRDS +T +L+D+LGGN +T +V SP+
Sbjct: 1 NKSLSALGNVISALAE------GTKTHVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVF 54
Query: 436 NYEETLSTLRYADRAKRIVNHAVDN 460
N ET STL + RAK I N N
Sbjct: 55 NEAETKSTLMFGQRAKTIKNTVSVN 79
>3fm8_A Kinesin-like protein KIF13B; kinesin, GAP, GTPase activation,
structural genomics consort ATP-binding, cytoskeleton,
microtubule, motor protein, NUCL binding; 2.30A {Homo
sapiens} PDB: 3mdb_A*
Length = 124
Score = 74.6 bits (183), Expect = 2e-16
Identities = 33/61 (54%), Positives = 42/61 (68%), Gaps = 1/61 (1%)
Query: 120 NKQEALESMGISVQASGIKVEKNKYYLVNLNADPSLNELLVYYLKDCTLIGSSDKNDIQL 179
+ + + Q GIKV +K +LVNLNADP+LNELLVYYLK+ TLIGS++ DIQL
Sbjct: 4 HHHHSSGRENLYFQG-GIKVGDDKCFLVNLNADPALNELLVYYLKEHTLIGSANSQDIQL 62
Query: 180 S 180
Sbjct: 63 C 63
>1wln_A Afadin; beta sandwich, FHA domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus} SCOP: b.26.1.2
Length = 120
Score = 56.4 bits (136), Expect = 5e-10
Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 5/53 (9%)
Query: 134 ASGIKVEKNKYYLVNLNADPSL--NELLVYYLKDCTLI---GSSDKNDIQLSG 181
+SG + YLV L+ D S ++ +Y L+ D N IQL G
Sbjct: 2 SSGSSGPEKLPYLVELSPDGSDSRDKPKLYRLQLSVTEVGTEKFDDNSIQLFG 54
>2eh0_A KLP, kinesin-like protein KIF1B; FHA domain, KIAA0591, KIAA1448,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 130
Score = 54.8 bits (131), Expect = 2e-09
Identities = 22/50 (44%), Positives = 30/50 (60%), Gaps = 4/50 (8%)
Query: 136 GIKVEKNKYYLVNLNADPSLNELLVYYLKD-CTLIGSSD---KNDIQLSG 181
G +LVNLN DP ++E L+YY+KD T +G +D + DI LSG
Sbjct: 1 GSSGSSGTPHLVNLNEDPLMSECLLYYIKDGITRVGQADAERRQDIVLSG 50
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 54.9 bits (131), Expect = 5e-08
Identities = 47/318 (14%), Positives = 93/318 (29%), Gaps = 103/318 (32%)
Query: 251 NMNSESSRSHAVFSVVLTQTLVDTKSGVEGEKVARLSLVDLASEEIDSLMAEGNKSRTVA 310
+M+ E+ + +L+ + + V + L+ EEID ++ +
Sbjct: 6 HMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKD------ 59
Query: 311 ATNMNSESSRSHAVFSVVLTQTLVDTKSGVEGEKVARLSLVDLAGSERAVKTGAVGERLK 370
S + +F +L++ E V+ V E L+
Sbjct: 60 ------AVSGTLRLFWTLLSK------------------------QEEMVQK-FVEEVLR 88
Query: 371 EGSNINKSLTTLGLVISKLADST-SSSKNKDKFVPYRDSVLTWLLKDNLGGNSKTVMVAT 429
++S + S ++ RD L DN
Sbjct: 89 ---------INYKFLMSPIKTEQRQPSMMTRMYIEQRDR----LYNDN----------QV 125
Query: 430 VSPAADNYEETLSTLRYA----DRAKRIVNHAVDNLGGNSKTVMVATVSPAADNYE---- 481
+ + + LR A AK ++ +D + G+ KT + V +Y+
Sbjct: 126 FAKYNVSRLQPYLKLRQALLELRPAKNVL---IDGVLGSGKTWVALDV---CLSYKVQCK 179
Query: 482 --------------------ETLSTLRYADRAKRIVNHAVVNEDPNARIIRELRQEVDKL 521
E L L Y +I + D ++ I + +L
Sbjct: 180 MDFKIFWLNLKNCNSPETVLEMLQKLLY-----QIDPNWTSRSDHSSNIKLRIHSIQAEL 234
Query: 522 KEMLISAGVPHGAKYLLI 539
+ +L S + LL+
Sbjct: 235 RRLLKSKPYENC---LLV 249
Score = 30.2 bits (67), Expect = 2.5
Identities = 17/82 (20%), Positives = 32/82 (39%), Gaps = 15/82 (18%)
Query: 13 LCDSLFDLIAKQESSELTYNPYIRTPIRKYEMIYSCRVSMLKMIYGLKASNSTHAVFSVV 72
+ ++L L Y PYI KYE + + ++L + + N + ++ +
Sbjct: 520 ILNTLQQLK--------FYKPYICDNDPKYERLVN---AILDFLPKI-EENLICSKYTDL 567
Query: 73 LTQTLVDTKSGV--EGEK-VAR 91
L L+ + E K V R
Sbjct: 568 LRIALMAEDEAIFEEAHKQVQR 589
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 53.5 bits (128), Expect = 1e-07
Identities = 93/576 (16%), Positives = 183/576 (31%), Gaps = 177/576 (30%)
Query: 16 SLFDLIAK---------QESSELTYNPYIRTPIRKYEMIYSCRVSMLKMIYGLKASNSTH 66
+ +L+ K + S ++ + + ++E Y L+ N H
Sbjct: 56 TPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCY------------LE-GNDIH 102
Query: 67 AVFSVVLTQ---TLVDTKSGV----EGEKVARLSLVDLAGSE--RAVKTGAV-------G 110
A+ + +L + TLV TK + +A+ + S RAV G G
Sbjct: 103 ALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGG 162
Query: 111 -----ERLKEGSNINK------QEALESMGISVQA-SGIKVEKNKYY---------LVNL 149
+ +E ++ + + ++ ++ ++ K + L N
Sbjct: 163 QGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENP 222
Query: 150 NADPSLNELLVYYLKDCTLIGSSDKNDIQLSGNLKINFGLFFCFQVHDLLDPKANKQSLK 209
+ P + L+ C LIG IQL+ ++ + ++ P + LK
Sbjct: 223 SNTPD-KDYLLSIPISCPLIGV-----IQLA-----HY-VVTA-KLLGF-TPGELRSYLK 268
Query: 210 VREHNVLGPYVDGLSQLAVTSFQEIDSLMAEGNKSRTVAATNMNSESSRSHAVFSVV-LT 268
G ++ +A+ +S K A T + R + + L
Sbjct: 269 ----GATGHSQGLVTAVAIAETDSWESFFVSVRK----AITVLFFIGVRCYEAYPNTSLP 320
Query: 269 QTLV-DTKSGVEGEKVARLSLVDLASEEIDSLMAEGNK----SRTVAATNMNSESSRSHA 323
+++ D+ EG LS+ +L E++ + + N + V + +N +++
Sbjct: 321 PSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVN--GAKNL- 377
Query: 324 VFSVVLTQTLVDTKSGVEGEKVARLSLVDLAGSERAVKTGAVGERLKEGSNINKSLTTLG 383
VV SG SL L + R K + G + ++
Sbjct: 378 ---VV---------SG------PPQSLYGLNLTLRKAKAPS-------GLDQSR------ 406
Query: 384 LVISKLADSTSSSKNKDKF--------VPY--------RDSVLTWLLKDNLGGNSKTVMV 427
S+ K KF P+ D + L+K+N+ N+K + +
Sbjct: 407 ---------IPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQI 457
Query: 428 ATVSPAADNYEETLSTLRYADRAKRIVNHAVDNLGGNSKTVMVATVS-PAADNYEET--- 483
V D S LR I VD ++ V ++ T
Sbjct: 458 -PVYDTFDG-----SDLRVLS--GSISERIVD-------CIIRLPVKWETTTQFKATHIL 502
Query: 484 ---------LSTL--RYAD-RAKRIVNHAVVNEDPN 507
L L R D R++ ++ +P+
Sbjct: 503 DFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDINPD 538
Score = 43.5 bits (102), Expect = 2e-04
Identities = 61/335 (18%), Positives = 106/335 (31%), Gaps = 114/335 (34%)
Query: 116 GSNINKQEALESMGISV-QASGIKVEKNKYYLVNLNADPSLNELLVYYLKDCTLIGSSDK 174
GS QE + MG+ + + S K ++ + N AD + + + D +
Sbjct: 1625 GS----QE--QGMGMDLYKTS--KAAQD---VWN-RADNHFKDTYGFSILDIVI-----N 1667
Query: 175 NDIQLSGNLKINFGLFFCFQVHDLLDPKANKQSLKVREHNVLG----PYVDGLSQLAVTS 230
N + L+ I+FG ++ ++RE N VDG
Sbjct: 1668 NPVNLT----IHFG---------------GEKGKRIRE-NYSAMIFETIVDG-KLKTEKI 1706
Query: 231 FQEID----SLMAEGNK---SRT------VAATNMNSESSRSHAVFSVVLTQTLVDTKSG 277
F+EI+ S K S T + A F + ++ L+ +
Sbjct: 1707 FKEINEHSTSYTFRSEKGLLSATQFTQPALTLM--------EKAAFEDLKSKGLIPADAT 1758
Query: 278 VEG----E---KVAR---LSLVDLAS------EEIDSLMAEGNKSRT---VAATNMNSES 318
G E + +S+ L + + R+ + A N
Sbjct: 1759 FAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINP---- 1814
Query: 319 SRSHAVFSVVLTQTLVDT---KSG---------VEGEKVARLSLVDLAGSERAVKTGAVG 366
R A FS Q +V+ ++G VE ++ AG RA+ T V
Sbjct: 1815 GRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYV------AAGDLRALDT--VT 1866
Query: 367 ERLKEGSNINKSLTTLGLVISKLADSTSSSKNKDK 401
L + K + I +L S S + +
Sbjct: 1867 NVLNF-IKLQK------IDIIELQKSLSLEEVEGH 1894
>2g1l_A Kinesin-like protein KIF1C; transport, FHA domain, structural
genomics consortium, kines transport protein; 2.60A
{Homo sapiens} SCOP: b.26.1.2
Length = 104
Score = 44.6 bits (105), Expect = 4e-06
Identities = 15/36 (41%), Positives = 23/36 (63%)
Query: 145 YLVNLNADPSLNELLVYYLKDCTLIGSSDKNDIQLS 180
+LVNLN DP ++E L+Y++KD DI+L+
Sbjct: 5 HLVNLNEDPLMSECLLYHIKDGVTRVGQVDMDIKLT 40
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.4 bits (75), Expect = 0.078
Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Query: 205 KQSLKVREHNVLGPYV-DGLSQLAVTSFQE 233
KQ+LK + L Y D LA+ + E
Sbjct: 19 KQALKKLQ-ASLKLYADDSAPALAIKATME 47
Score = 31.1 bits (69), Expect = 0.54
Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 4/30 (13%)
Query: 515 RQEVDKLKEML-ISAGVPHGAKYLLISQAS 543
+Q + KL+ L + A A L I +A+
Sbjct: 19 KQALKKLQASLKLYA--DDSAPALAI-KAT 45
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop,
phenylalanine mutant, hydrolase; 2.35A {Pyrococcus
horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A
3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A
3sdz_A
Length = 588
Score = 32.8 bits (75), Expect = 0.35
Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 6/64 (9%)
Query: 432 PAADNYEETLSTL--RYADRAKRIVNHAVDNLGGNSKTVMVATVSPAADNYEE--TLSTL 487
P + Y L++ + +RA R+V D G S + ++ VSP ++ E +TL
Sbjct: 351 PGEEGYPAYLASKLAEFYERAGRVVTLGSDYRVG-SVS-VIGAVSPPGGDFSEPVVQNTL 408
Query: 488 RYAD 491
R
Sbjct: 409 RVVK 412
>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis,
ATP-binding, hydrogen ION TRA hydrolase, ION transport;
2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A
3j0j_A* 1um2_C
Length = 578
Score = 31.6 bits (72), Expect = 0.74
Identities = 22/63 (34%), Positives = 27/63 (42%), Gaps = 6/63 (9%)
Query: 432 PAADNYEETLSTLRYADRAKRIVNHAVDNLGGNSKTV-MVATVSPAADNYEE--TLSTLR 488
PA + Y L+ R A +R V LGG V +V VSP + E T STLR
Sbjct: 345 PAEEGYPPYLAA-RLAAFYERAG--KVITLGGEEGAVTIVGAVSPPGGDMSEPVTQSTLR 401
Query: 489 YAD 491
Sbjct: 402 IVG 404
>3tkz_A Tyrosine-protein phosphatase non-receptor type 11; SH2 domain,
protein protein interactions, PTR residues, HYDR peptide
complex; HET: PTR; 1.80A {Homo sapiens} PDB: 3tl0_A*
1aya_A* 1ayb_A* 1ayc_A* 1ayd_A
Length = 109
Score = 27.2 bits (61), Expect = 4.9
Identities = 13/56 (23%), Positives = 26/56 (46%), Gaps = 6/56 (10%)
Query: 130 ISVQASG------IKVEKNKYYLVNLNADPSLNELLVYYLKDCTLIGSSDKNDIQL 179
+SV+ +G I+ + Y L +L EL+ YY++ + + + I+L
Sbjct: 46 LSVRRNGAVTHIKIQNTGDYYDLYGGEKFATLAELVQYYMEHHGQLKEKNGDVIEL 101
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure,
structural genomics, protein structure initiative; NMR
{Corynebacterium glutamicum} SCOP: a.4.1.19
Length = 97
Score = 27.0 bits (60), Expect = 6.1
Identities = 9/57 (15%), Positives = 19/57 (33%), Gaps = 4/57 (7%)
Query: 471 ATVSPAADNYEETLSTLRY----ADRAKRIVNHAVVNEDPNARIIRELRQEVDKLKE 523
A++ A++ TL+ + A IR+L++E +
Sbjct: 24 ASLQQIANDLGINRVTLKNWIIKYGSNHNVQGTTPSAAVSEAEQIRQLKKENALQRA 80
>3jqo_B TRAO protein; helical outer membrane TM, outer membrane protein
complex, plasmid, transport protein; HET: LDA; 2.60A
{Escherichia coli} PDB: 2ofq_A
Length = 135
Score = 27.6 bits (61), Expect = 6.5
Identities = 13/58 (22%), Positives = 19/58 (32%), Gaps = 11/58 (18%)
Query: 419 GGNSKTVMVATVSPAADNYEETLSTLRYADRAKRIVNHAVDNLGGNSKTVMVATVSPA 476
G N + V TV+ +R D+ + N+ G T T SP
Sbjct: 79 GENRNIIEVETVAKEW--------RIRLGDKVVGVRNNNFAPGRGAVAT---GTASPD 125
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.312 0.128 0.340
Gapped
Lambda K H
0.267 0.0757 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,460,875
Number of extensions: 445387
Number of successful extensions: 958
Number of sequences better than 10.0: 1
Number of HSP's gapped: 811
Number of HSP's successfully gapped: 149
Length of query: 544
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 446
Effective length of database: 3,965,535
Effective search space: 1768628610
Effective search space used: 1768628610
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 60 (26.8 bits)