RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12523
(544 letters)
>d2zfia1 c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), kif1a
[TaxId: 10090]}
Length = 349
Score = 183 bits (464), Expect = 1e-53
Identities = 107/162 (66%), Positives = 125/162 (77%), Gaps = 5/162 (3%)
Query: 295 EIDSLMAEGNKSRTVAATNMNSESSRSHAVFSVVLTQTLVDTKSGVEGEKVARLSLVDLA 354
+I LM GNK RTVAATNMN SSRSHAVF+++ TQ D ++ + EKV+++SLVDLA
Sbjct: 188 DIQDLMDSGNKPRTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITTEKVSKISLVDLA 247
Query: 355 GSERAVKTGAVGERLKEGSNINKSLTTLGLVISKLADSTSS-----SKNKDKFVPYRDSV 409
GSERA TGA G RLKEG+NINKSLTTLG VIS LA+ S K K F+PYRDSV
Sbjct: 248 GSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYRDSV 307
Query: 410 LTWLLKDNLGGNSKTVMVATVSPAADNYEETLSTLRYADRAK 451
LTWLL++NLGGNS+T MVA +SPA NY+ETLSTLRYADRAK
Sbjct: 308 LTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAK 349
Score = 53.8 bits (128), Expect = 2e-08
Identities = 35/61 (57%), Positives = 47/61 (77%)
Query: 62 SNSTHAVFSVVLTQTLVDTKSGVEGEKVARLSLVDLAGSERAVKTGAVGERLKEGSNINK 121
S+ +HAVF+++ TQ D ++ + EKV+++SLVDLAGSERA TGA G RLKEG+NINK
Sbjct: 211 SSRSHAVFNIIFTQKRHDAETNITTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINK 270
Query: 122 Q 122
Sbjct: 271 S 271
>d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId: 9606]}
Length = 323
Score = 165 bits (418), Expect = 3e-47
Identities = 75/159 (47%), Positives = 97/159 (61%), Gaps = 11/159 (6%)
Query: 295 EIDSLMAEGNKSRTVAATNMNSESSRSHAVFSVVLTQTLVDTKSGVEGEKVARLSLVDLA 354
E+ + EG +R VA TNMN SSRSH++F + + Q T E + +L LVDLA
Sbjct: 176 EVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQT----EQKLSGKLYLVDLA 231
Query: 355 GSERAVKTGAVGERLKEGSNINKSLTTLGLVISKLADSTSSSKNKDKFVPYRDSVLTWLL 414
GSE+ KTGA G L E NINKSL+ LG VIS LA+ +VPYRDS +T +L
Sbjct: 232 GSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAE-------GSTYVPYRDSKMTRIL 284
Query: 415 KDNLGGNSKTVMVATVSPAADNYEETLSTLRYADRAKRI 453
+D+LGGN +T +V SP++ N ET STL + RAK I
Sbjct: 285 QDSLGGNCRTTIVICCSPSSYNESETKSTLLFGQRAKTI 323
Score = 54.1 bits (129), Expect = 2e-08
Identities = 43/123 (34%), Positives = 58/123 (47%), Gaps = 6/123 (4%)
Query: 194 QVHDLLDPKANKQSLKVREHNVLGPYVDGLSQLAVTSFQEIDSLMAEGNKSRTVAATNMN 253
++ DLLD +K +L V E PYV G ++ V S E+ + EG +R VA TNMN
Sbjct: 139 KIRDLLDV--SKTNLSVHEDKNRVPYVKGCTERFVCSPDEVMDTIDEGKSNRHVAVTNMN 196
Query: 254 SESSRSHAVFSVVLTQTLVDTKSGVEGEKVARLSLVDLASEEIDSLMAEGNKSRTVAATN 313
SSRSH++F + + Q T E + +L LVDLA E S A
Sbjct: 197 EHSSRSHSIFLINVKQENTQT----EQKLSGKLYLVDLAGSEKVSKTGAEGAVLDEAKNI 252
Query: 314 MNS 316
S
Sbjct: 253 NKS 255
>d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]}
Length = 354
Score = 163 bits (414), Expect = 2e-46
Identities = 83/167 (49%), Positives = 110/167 (65%), Gaps = 10/167 (5%)
Query: 294 EEIDSLMAEGNKSRTVAATNMNSESSRSHAVFSVVLTQTLVDTKSGVEGEKVARLSLVDL 353
+E+ +M G +R VAATNMN ESSRSH++F + +TQ V+T S K +L LVDL
Sbjct: 180 QEVYEVMRRGGNARAVAATNMNQESSRSHSIFVITITQKNVETGS----AKSGQLFLVDL 235
Query: 354 AGSERAVKTGAVGERLKEGSNINKSLTTLGLVISKLADSTSSSKNKDKFVPYRDSVLTWL 413
AGSE+ KTGA G+ L+E INKSL+ LG+VI+ L + K VPYRDS LT +
Sbjct: 236 AGSEKVGKTGASGQTLEEAKKINKSLSALGMVINAL------TDGKSSHVPYRDSKLTRI 289
Query: 414 LKDNLGGNSKTVMVATVSPAADNYEETLSTLRYADRAKRIVNHAVDN 460
L+++LGGNS+T ++ SP++ N ETLSTLR+ RAK I N A N
Sbjct: 290 LQESLGGNSRTTLIINCSPSSYNDAETLSTLRFGMRAKSIKNKAKVN 336
Score = 55.3 bits (132), Expect = 6e-09
Identities = 44/109 (40%), Positives = 65/109 (59%), Gaps = 6/109 (5%)
Query: 183 LKINFGLFFCFQVHDLLDPKANKQSLKVREHNVLGPYVDGLSQLAVTSFQEIDSLMAEGN 242
+++++ + ++ DLL P +L V E G YV GL ++ V+S QE+ +M G
Sbjct: 133 VRVSYMEIYMERIRDLLAP--QNDNLPVHEEKNRGVYVKGLLEIYVSSVQEVYEVMRRGG 190
Query: 243 KSRTVAATNMNSESSRSHAVFSVVLTQTLVDTKSGVEGEKVARLSLVDL 291
+R VAATNMN ESSRSH++F + +TQ V+T S K +L LVDL
Sbjct: 191 NARAVAATNMNQESSRSHSIFVITITQKNVETGS----AKSGQLFLVDL 235
Score = 39.5 bits (91), Expect = 8e-04
Identities = 35/141 (24%), Positives = 52/141 (36%), Gaps = 12/141 (8%)
Query: 32 NPYIRTPIRKYEMIYSCRVSMLKMIYGLKASNSTHAVFSVVLTQTLVDTKSGVEGEKVAR 91
E+ R N + + T+ K +
Sbjct: 170 GLLEIYVSSVQEVYEVMRRGGNARAVAATNMNQESSRSHSIFVITITQKNVETGSAKSGQ 229
Query: 92 LSLVDLAGSERAVKTGAVGERLKEGSNINKQEALESMGISVQASGIKVEKNKYYLVNLNA 151
L LVDLAGSE+ KTGA G+ L+E INK L ++G+ + A + K V
Sbjct: 230 LFLVDLAGSEKVGKTGASGQTLEEAKKINKS--LSALGMVINA----LTDGKSSHV---- 279
Query: 152 DPSLNELLVYYLKDCTLIGSS 172
P + L L++ L G+S
Sbjct: 280 -PYRDSKLTRILQES-LGGNS 298
>d1v8ka_ c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c [TaxId:
10090]}
Length = 362
Score = 161 bits (407), Expect = 2e-45
Identities = 61/162 (37%), Positives = 87/162 (53%), Gaps = 18/162 (11%)
Query: 294 EEIDSLMAEGNKSRTVAATNMNSESSRSHAVFSVVLTQTLVDTKSGVEGEKVARLSLVDL 353
+++ ++ G+ RT T NS SSRSHA F ++L +G + SLVDL
Sbjct: 216 DDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLRT---------KGRLHGKFSLVDL 266
Query: 354 AGSERAVKTGAVG-ERLKEGSNINKSLTTLGLVISKLADSTSSSKNKDKFVPYRDSVLTW 412
AG+ER T + + EG+ INKSL L I L P+R+S LT
Sbjct: 267 AGNERGADTSSADRQTRMEGAEINKSLLALKECIRALG-------QNKAHTPFRESKLTQ 319
Query: 413 LLKDN-LGGNSKTVMVATVSPAADNYEETLSTLRYADRAKRI 453
+L+D+ +G NS+T M+A +SP + E TL+TLRYADR K +
Sbjct: 320 VLRDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRVKEL 361
Score = 36.4 bits (83), Expect = 0.007
Identities = 29/114 (25%), Positives = 48/114 (42%), Gaps = 22/114 (19%)
Query: 60 KASNSTHAVFSVVLTQTLVDTKSGVEGEKVARLSLVDLAGSERAVKTGAVG-ERLKEGSN 118
S+ +HA F ++L +G + SLVDLAG+ER T + + EG+
Sbjct: 238 SNSSRSHACFQILLRT---------KGRLHGKFSLVDLAGNERGADTSSADRQTRMEGAE 288
Query: 119 INKQEALESMGISVQASGIKVEKNKYYLVNLNADPSLNELLVYYLKDCTLIGSS 172
INK L ++ ++A G + + P L L+D + +S
Sbjct: 289 INKS--LLALKECIRALG---QNKAH-------TPFRESKLTQVLRDSFIGENS 330
>d1f9va_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional)
{Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId:
4932]}
Length = 342
Score = 157 bits (398), Expect = 3e-44
Identities = 59/155 (38%), Positives = 92/155 (59%), Gaps = 8/155 (5%)
Query: 299 LMAEGNKSRTVAATNMNSESSRSHAVFSVVLTQTLVDTKSGVEGEKVARLSLVDLAGSER 358
++ + NK R+ A+T N SS SH++F + L + + L+LVDLAGSER
Sbjct: 193 ILKKANKLRSTASTASNEHSSASHSIFII----HLSGSNAKTGAHSYGTLNLVDLAGSER 248
Query: 359 AVKTGAVGERLKEGSNINKSLTTLGLVISKLADSTSSSKNKDKFVPYRDSVLTWLLKDNL 418
+ VG+RL+E NINKSL+ LG VI L + + +P+R+S LT+LL+ +L
Sbjct: 249 INVSQVVGDRLRETQNINKSLSCLGDVIHALGQP----DSTKRHIPFRNSKLTYLLQYSL 304
Query: 419 GGNSKTVMVATVSPAADNYEETLSTLRYADRAKRI 453
G+SKT+M +SP++ + ETL++LR+A +
Sbjct: 305 TGDSKTLMFVNISPSSSHINETLNSLRFASKVNST 339
Score = 43.8 bits (102), Expect = 4e-05
Identities = 29/131 (22%), Positives = 54/131 (41%), Gaps = 13/131 (9%)
Query: 194 QVHDLLDPKANKQSLK--------VREHNVLGPYVDGLSQLAVTSFQEIDSLMAEGNKSR 245
+ DLL N + + + ++ + S + ++ ++ + NK R
Sbjct: 142 NIVDLLRSDNNNKEDTSIGLKHEIRHDQETKTTTITNVTSCKLESEEMVEIILKKANKLR 201
Query: 246 TVAATNMNSESSRSHAVFSVVLTQTLVDTKSGVEGEKVARLSLVDLA-SEEIDSLMAEGN 304
+ A+T N SS SH++F + L + + L+LVDLA SE I+ G+
Sbjct: 202 STASTASNEHSSASHSIFII----HLSGSNAKTGAHSYGTLNLVDLAGSERINVSQVVGD 257
Query: 305 KSRTVAATNMN 315
+ R N +
Sbjct: 258 RLRETQNINKS 268
Score = 34.6 bits (78), Expect = 0.025
Identities = 23/83 (27%), Positives = 35/83 (42%)
Query: 42 YEMIYSCRVSMLKMIYGLKASNSTHAVFSVVLTQTLVDTKSGVEGEKVARLSLVDLAGSE 101
+ + + ASN + + L + + L+LVDLAGSE
Sbjct: 188 EMVEIILKKANKLRSTASTASNEHSSASHSIFIIHLSGSNAKTGAHSYGTLNLVDLAGSE 247
Query: 102 RAVKTGAVGERLKEGSNINKQEA 124
R + VG+RL+E NINK +
Sbjct: 248 RINVSQVVGDRLRETQNINKSLS 270
>d1x88a1 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), mitotic
kinesin eg5 [TaxId: 9606]}
Length = 345
Score = 156 bits (395), Expect = 1e-43
Identities = 81/188 (43%), Positives = 117/188 (62%), Gaps = 9/188 (4%)
Query: 269 QTLVDTKSGVEGEKVARLSLVDLASEE-IDSLMAEGNKSRTVAATNMNSESSRSHAVFSV 327
+ D G + L + + +++ + ++ +G RT AAT MN+ SSRSH+VFSV
Sbjct: 165 LQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSV 224
Query: 328 VLTQTLVDTKSGVEGEKVARLSLVDLAGSERAVKTGAVGERLKEGSNINKSLTTLGLVIS 387
+ G E K+ +L+LVDLAGSE ++GAV +R +E NIN+SL TLG VI+
Sbjct: 225 TIHMKETTI-DGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVIT 283
Query: 388 KLADSTSSSKNKDKFVPYRDSVLTWLLKDNLGGNSKTVMVATVSPAADNYEETLSTLRYA 447
L + + VPYR+S LT +L+D+LGG ++T ++AT+SPA+ N EETLSTL YA
Sbjct: 284 ALVE-------RTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYA 336
Query: 448 DRAKRIVN 455
RAK I+N
Sbjct: 337 HRAKNILN 344
Score = 56.9 bits (136), Expect = 2e-09
Identities = 35/101 (34%), Positives = 56/101 (55%), Gaps = 4/101 (3%)
Query: 194 QVHDLLDPKAN---KQSLKVREHNVLGPYVDGLSQLAVTSFQEIDSLMAEGNKSRTVAAT 250
++ DLL+P ++ + + N G + GL ++ V + E+ ++ +G RT AAT
Sbjct: 150 ELFDLLNPSSDVSERLQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAAT 209
Query: 251 NMNSESSRSHAVFSVVLTQTLVDTKSGVEGEKVARLSLVDL 291
MN+ SSRSH+VFSV + G E K+ +L+LVDL
Sbjct: 210 LMNAYSSRSHSVFSVTIHMKETTI-DGEELVKIGKLNLVDL 249
>d1ry6a_ c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodium
falciparum) [TaxId: 5833]}
Length = 330
Score = 153 bits (387), Expect = 8e-43
Identities = 52/153 (33%), Positives = 82/153 (53%), Gaps = 15/153 (9%)
Query: 300 MAEGNKSRTVAATNMNSESSRSHAVFSVVLTQTLVDTKSGVEGEKVARLSLVDLAGSERA 359
M +G R + + N ESSRSHA+ ++ L + + +++ +DLAGSER
Sbjct: 191 MIDGVLLRKIGVNSQNDESSRSHAILNIDLKDIN-------KNTSLGKIAFIDLAGSERG 243
Query: 360 VKTGAVGE-RLKEGSNINKSLTTLGLVISKLADSTSSSKNKDKFVPYRDSVLTWLLKDNL 418
T + + +G+NIN+SL L I + + +P+RDS LT +L+D
Sbjct: 244 ADTVSQNKQTQTDGANINRSLLALKECIRAMD-------SDKNHIPFRDSELTKVLRDIF 296
Query: 419 GGNSKTVMVATVSPAADNYEETLSTLRYADRAK 451
G SK++M+A +SP E+TL+TLRY+ R K
Sbjct: 297 VGKSKSIMIANISPTISCCEQTLNTLRYSSRVK 329
Score = 38.0 bits (87), Expect = 0.002
Identities = 28/119 (23%), Positives = 50/119 (42%), Gaps = 13/119 (10%)
Query: 14 CDSLFDLIAKQESSELTYNP---------YIRTPIRKYEMIYSCRVSMLKMIYGLKASNS 64
C L+DL+ K++ N I + K E+I +L G+ + N
Sbjct: 148 CGKLYDLLQKRKMVAALENGKKEVVVKDLKILRVLTKEELILKMIDGVLLRKIGVNSQND 207
Query: 65 THAVFSVVLTQTLVDTKSGVEGEKVARLSLVDLAGSERAVKTGAVGE-RLKEGSNINKQ 122
+ +L L D + + +++ +DLAGSER T + + +G+NIN+
Sbjct: 208 ESSRSHAILNIDLKDIN---KNTSLGKIAFIDLAGSERGADTVSQNKQTQTDGANINRS 263
>d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato
(Solanum tuberosum) [TaxId: 4113]}
Length = 364
Score = 150 bits (378), Expect = 4e-41
Identities = 70/166 (42%), Positives = 103/166 (62%), Gaps = 11/166 (6%)
Query: 295 EIDSLMAEGNKSRTVAATNMNSESSRSHAVFSVVLTQTLVDTKSGVEGEKVARLSLVDLA 354
E+ +++ G++ R T MN +SSRSH + SV++ T + T++ +LS VDLA
Sbjct: 175 ELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIESTNLQTQA----IARGKLSFVDLA 230
Query: 355 GSERAVKTGAVGERLKEGSNINKSLTTLGLVISKLADSTSSSKNKDKFVPYRDSVLTWLL 414
GSER K+G+ G +LKE +INKSL+ LG VIS L+ ++ +PYR+ LT L+
Sbjct: 231 GSERVKKSGSAGNQLKEAQSINKSLSALGDVISALSS-------GNQHIPYRNHKLTMLM 283
Query: 415 KDNLGGNSKTVMVATVSPAADNYEETLSTLRYADRAKRIVNHAVDN 460
D+LGGN+KT+M +SPA N +ET ++L YA R + IVN N
Sbjct: 284 SDSLGGNAKTLMFVNISPAESNLDETHNSLTYASRVRSIVNDPSKN 329
Score = 48.8 bits (115), Expect = 8e-07
Identities = 34/126 (26%), Positives = 67/126 (53%), Gaps = 5/126 (3%)
Query: 168 LIGSSDKNDIQLSGNLKINFGLFFCFQVHDLLDPKANK-QSLKVREHNVLGPYVDGLSQL 226
L K+ + S +LK + + DLL PK K L +++ + V+ ++ +
Sbjct: 109 LFRIMKKDSNKFSFSLKAYMVELYQDTLVDLLLPKQAKRLKLDIKKDSKGMVSVENVTVV 168
Query: 227 AVTSFQEIDSLMAEGNKSRTVAATNMNSESSRSHAVFSVVLTQTLVDTKSGVEGEKVARL 286
++++++E+ +++ G++ R T MN +SSRSH + SV++ T + T++ +L
Sbjct: 169 SISTYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIESTNLQTQA----IARGKL 224
Query: 287 SLVDLA 292
S VDLA
Sbjct: 225 SFVDLA 230
Score = 35.7 bits (81), Expect = 0.013
Identities = 25/74 (33%), Positives = 39/74 (52%)
Query: 63 NSTHAVFSVVLTQTLVDTKSGVEGEKVARLSLVDLAGSERAVKTGAVGERLKEGSNINKQ 122
N + ++++ + T + +LS VDLAGSER K+G+ G +LKE +INK
Sbjct: 195 NEQSSRSHLIVSVIIESTNLQTQAIARGKLSFVDLAGSERVKKSGSAGNQLKEAQSINKS 254
Query: 123 EALESMGISVQASG 136
+ IS +SG
Sbjct: 255 LSALGDVISALSSG 268
>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional)
{Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 368
Score = 149 bits (377), Expect = 6e-41
Identities = 57/157 (36%), Positives = 80/157 (50%), Gaps = 15/157 (9%)
Query: 295 EIDSLMAEGNKSRTVAATNMNSESSRSHAVFSVVLTQTLVDTKSGVEGEKVARLSLVDLA 354
+ LM +R A+T N SSRSHAV + L + + V ++LVDLA
Sbjct: 225 HLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEK----QEISVGSINLVDLA 280
Query: 355 GSERAVKTGAVGERLKEGSNINKSLTTLGLVISKLADSTSSSKNKDKFVPYRDSVLTWLL 414
G ++ R+ E NIN+SL+ L VI L K +PYR+S LT LL
Sbjct: 281 G----SESPKTSTRMTETKNINRSLSELTNVILALL-------QKQDHIPYRNSKLTHLL 329
Query: 415 KDNLGGNSKTVMVATVSPAADNYEETLSTLRYADRAK 451
+LGGNSKT+M VSP D ++E++ +LR+A
Sbjct: 330 MPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVN 366
>d2g1la1 b.26.1.2 (A:498-599) Kinesin-like protein kif1c {Human
(Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 47.4 bits (112), Expect = 2e-07
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 145 YLVNLNADPSLNELLVYYLKDCTLIGSSDKNDIQL 179
+LVNLN DP ++E L+Y++KD DI+L
Sbjct: 3 HLVNLNEDPLMSECLLYHIKDGVTRVGQVDMDIKL 37
>d1wlna1 b.26.1.2 (A:8-114) Afadin {Mouse (Mus musculus) [TaxId:
10090]}
Length = 107
Score = 45.4 bits (107), Expect = 9e-07
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 5/42 (11%)
Query: 145 YLVNLNADPSL--NELLVYYLKD-CTLIGS--SDKNDIQLSG 181
YLV L+ D S ++ +Y L+ T +G+ D N IQL G
Sbjct: 6 YLVELSPDGSDSRDKPKLYRLQLSVTEVGTEKFDDNSIQLFG 47
>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis)
[TaxId: 7054]}
Length = 541
Score = 32.2 bits (72), Expect = 0.19
Identities = 12/57 (21%), Positives = 21/57 (36%), Gaps = 4/57 (7%)
Query: 488 RYADRAKRIVNHAVVNEDPNARI-IRELRQEVDKLKEMLISAGVPHGAKYLLISQAS 543
RYA I A + I E + +L E + G+ + ++ S+ S
Sbjct: 29 RYALVPGTI---AFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENS 82
>d1pbya5 b.61.4.1 (A:166-273) Quinohemoprotein amine dehydrogenase A
chain, domain 3 {Paracoccus denitrificans [TaxId: 266]}
Length = 108
Score = 27.1 bits (60), Expect = 1.9
Identities = 9/38 (23%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
Query: 411 TWLLKDNLGGNSKTVMVATVSPAADNYEETLSTLRYAD 448
++L G + A ++Y E TL +AD
Sbjct: 11 AYVLAGRQPGRGDYTGRLVLKKAGEDY-EVTMTLDFAD 47
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.312 0.128 0.340
Gapped
Lambda K H
0.267 0.0433 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,695,362
Number of extensions: 72799
Number of successful extensions: 173
Number of sequences better than 10.0: 1
Number of HSP's gapped: 154
Number of HSP's successfully gapped: 44
Length of query: 544
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 454
Effective length of database: 1,171,896
Effective search space: 532040784
Effective search space used: 532040784
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.7 bits)