BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12524
(151 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3GBJ|A Chain A, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|B Chain B, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|C Chain C, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
Length = 354
Score = 215 bits (548), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 97/143 (67%), Positives = 119/143 (83%), Gaps = 1/143 (0%)
Query: 3 PKTFAFDHCFYSLDPNLP-NFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYT 61
PK FA+DHCF+S+D ++ +A Q+ VF LG +IL NAF GYNACIFAYGQTGSGKSYT
Sbjct: 50 PKVFAYDHCFWSMDESVKEKYAGQDIVFKCLGENILQNAFDGYNACIFAYGQTGSGKSYT 109
Query: 62 MMGSQDNKGIIPRLCDSLFDLIAKQESSELTYKVEVSYMEIYNEKVHDLLDPKANKQSLK 121
MMG+ D G+IPRLC LF+ K+E+ E ++KVEVSYMEIYNEKV DLLDPK ++Q+LK
Sbjct: 110 MMGTADQPGLIPRLCSGLFERTQKEENEEQSFKVEVSYMEIYNEKVRDLLDPKGSRQTLK 169
Query: 122 VREHNVLGPYVDGLSQLAVTSFQ 144
VREH+VLGPYVDGLS+LAVTS++
Sbjct: 170 VREHSVLGPYVDGLSKLAVTSYK 192
>pdb|1I5S|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Adp
Length = 367
Score = 173 bits (439), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 83/146 (56%), Positives = 113/146 (77%), Gaps = 4/146 (2%)
Query: 1 KPPKTFAFDHCFYS-LDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKS 59
+ PK+F+FD+ ++S P N+ASQ++V+ +G ++L +AF+GYN CIFAYGQTG+GKS
Sbjct: 45 ETPKSFSFDYSYWSHTSPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKS 104
Query: 60 YTMMGSQ--DNKGIIPRLCDSLFDLIAKQESSELTYKVEVSYMEIYNEKVHDLLDPKANK 117
YTMMG Q D +GIIP+LC+ LF I + ++Y VEVSYMEIY E+V DLL+PK NK
Sbjct: 105 YTMMGKQEKDQQGIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPK-NK 163
Query: 118 QSLKVREHNVLGPYVDGLSQLAVTSF 143
+L+VREH +LGPYV+ LS+LAVTS+
Sbjct: 164 GNLRVREHPLLGPYVEDLSKLAVTSY 189
>pdb|1IA0|K Chain K, Kif1a Head-Microtubule Complex Structure In Atp-Form
pdb|2HXF|C Chain C, Kif1a Head-Microtubule Complex Structure In Amppnp-Form
pdb|2HXH|C Chain C, Kif1a Head-Microtubule Complex Structure In Adp-Form
Length = 394
Score = 173 bits (438), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 83/146 (56%), Positives = 113/146 (77%), Gaps = 4/146 (2%)
Query: 1 KPPKTFAFDHCFYS-LDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKS 59
+ PK+F+FD+ ++S P N+ASQ++V+ +G ++L +AF+GYN CIFAYGQTG+GKS
Sbjct: 61 ETPKSFSFDYSYWSHTSPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKS 120
Query: 60 YTMMGSQ--DNKGIIPRLCDSLFDLIAKQESSELTYKVEVSYMEIYNEKVHDLLDPKANK 117
YTMMG Q D +GIIP+LC+ LF I + ++Y VEVSYMEIY E+V DLL+PK NK
Sbjct: 121 YTMMGKQEKDQQGIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPK-NK 179
Query: 118 QSLKVREHNVLGPYVDGLSQLAVTSF 143
+L+VREH +LGPYV+ LS+LAVTS+
Sbjct: 180 GNLRVREHPLLGPYVEDLSKLAVTSY 205
>pdb|1I6I|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppcp
Length = 366
Score = 173 bits (438), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 83/146 (56%), Positives = 113/146 (77%), Gaps = 4/146 (2%)
Query: 1 KPPKTFAFDHCFYS-LDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKS 59
+ PK+F+FD+ ++S P N+ASQ++V+ +G ++L +AF+GYN CIFAYGQTG+GKS
Sbjct: 45 ETPKSFSFDYSYWSHTSPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKS 104
Query: 60 YTMMGSQ--DNKGIIPRLCDSLFDLIAKQESSELTYKVEVSYMEIYNEKVHDLLDPKANK 117
YTMMG Q D +GIIP+LC+ LF I + ++Y VEVSYMEIY E+V DLL+PK NK
Sbjct: 105 YTMMGKQEKDQQGIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPK-NK 163
Query: 118 QSLKVREHNVLGPYVDGLSQLAVTSF 143
+L+VREH +LGPYV+ LS+LAVTS+
Sbjct: 164 GNLRVREHPLLGPYVEDLSKLAVTSY 189
>pdb|1VFV|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFW|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFX|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-mg-alfx
pdb|1VFZ|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-Mg-Vo4
pdb|2ZFI|A Chain A, Crystal Structure Of The Kif1a Motor Domain Before Mg
Release
pdb|2ZFJ|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-1
pdb|2ZFK|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-2
pdb|2ZFL|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-3
pdb|2ZFM|A Chain A, Crystal Structure Of The Kif1a Motor Domain After Mg
Release
Length = 366
Score = 173 bits (438), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 83/146 (56%), Positives = 113/146 (77%), Gaps = 4/146 (2%)
Query: 1 KPPKTFAFDHCFYS-LDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKS 59
+ PK+F+FD+ ++S P N+ASQ++V+ +G ++L +AF+GYN CIFAYGQTG+GKS
Sbjct: 45 ETPKSFSFDYSYWSHTSPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKS 104
Query: 60 YTMMGSQ--DNKGIIPRLCDSLFDLIAKQESSELTYKVEVSYMEIYNEKVHDLLDPKANK 117
YTMMG Q D +GIIP+LC+ LF I + ++Y VEVSYMEIY E+V DLL+PK NK
Sbjct: 105 YTMMGKQEKDQQGIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPK-NK 163
Query: 118 QSLKVREHNVLGPYVDGLSQLAVTSF 143
+L+VREH +LGPYV+ LS+LAVTS+
Sbjct: 164 GNLRVREHPLLGPYVEDLSKLAVTSY 189
>pdb|2OWM|A Chain A, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|B Chain B, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|C Chain C, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|D Chain D, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
Length = 443
Score = 148 bits (373), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 72/146 (49%), Positives = 98/146 (67%), Gaps = 5/146 (3%)
Query: 4 KTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYTMM 63
K+F FD F+S + ++A+QE V+D+LG + LD+ F+GY+ CIFAYGQTGSGKSYTMM
Sbjct: 96 KSFTFDKSFWSHNTEDEHYATQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTMM 155
Query: 64 GSQDNKGIIPRLCDSLFDLI--AKQESSELTYKVEVSYMEIYNEKVHDLLDPKANKQS-- 119
G+ D G+IPR C+ LF I A+ E+ ++Y V+VSY E+YNE V DLL P +
Sbjct: 156 GTPDQPGLIPRTCEDLFQRIASAQDETPNISYNVKVSYFEVYNEHVRDLLAPVVPNKPPY 215
Query: 120 -LKVREHNVLGPYVDGLSQLAVTSFQ 144
LKVRE GPYV L+++ V +
Sbjct: 216 YLKVRESPTEGPYVKDLTEVPVRGLE 241
>pdb|1GOJ|A Chain A, Structure Of A Fast Kinesin: Implications For Atpase
Mechanism And Interactions With Microtubules
Length = 355
Score = 104 bits (260), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 58/144 (40%), Positives = 82/144 (56%), Gaps = 14/144 (9%)
Query: 5 TFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYTMMG 64
+F FD F Q +FD + +D+ GYN +FAYGQTG+GKSYTMMG
Sbjct: 48 SFTFDRVF-------DMSCKQSDIFDFSIKPTVDDILNGYNGTVFAYGQTGAGKSYTMMG 100
Query: 65 SQ----DNKGIIPRLCDSLFDLIAKQESSELTYKVEVSYMEIYNEKVHDLLDPKANKQSL 120
+ D +G+IPR+ + +F I ++ + Y V VSYMEIY E++ DLL P+ + +L
Sbjct: 101 TSIDDPDGRGVIPRIVEQIFTSIL-SSAANIEYTVRVSYMEIYMERIRDLLAPQND--NL 157
Query: 121 KVREHNVLGPYVDGLSQLAVTSFQ 144
V E G YV GL ++ V+S Q
Sbjct: 158 PVHEEKNRGVYVKGLLEIYVSSVQ 181
>pdb|1T5C|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
pdb|1T5C|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
Length = 349
Score = 101 bits (252), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 57/137 (41%), Positives = 79/137 (57%), Gaps = 9/137 (6%)
Query: 4 KTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYTMM 63
K+F FD F+ + + + V++ + I+D+A QGYN IFAYGQT SGK+YTMM
Sbjct: 44 KSFNFDRVFHGNE-------TTKNVYEEIAAPIIDSAIQGYNGTIFAYGQTASGKTYTMM 96
Query: 64 GSQDNKGIIPRLCDSLFDLIAKQESSELTYKVEVSYMEIYNEKVHDLLDPKANKQSLKVR 123
GS+D+ G+IPR +F I K E + + VSYMEIYNE + DLL + L +R
Sbjct: 97 GSEDHLGVIPRAIHDIFQKIKKFPDRE--FLLRVSYMEIYNETITDLLCGTQKMKPLIIR 154
Query: 124 EHNVLGPYVDGLSQLAV 140
E YV L++ V
Sbjct: 155 EDVNRNVYVADLTEEVV 171
>pdb|2Y5W|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y5W|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y65|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|C Chain C, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|D Chain D, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
Length = 365
Score = 98.2 bits (243), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 59/142 (41%), Positives = 84/142 (59%), Gaps = 13/142 (9%)
Query: 4 KTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYTM- 62
K + FD F PN ASQEKV++ + I+ + GYN IFAYGQT SGK++TM
Sbjct: 51 KVYLFDKVF---KPN----ASQEKVYNEAAKSIVTDVLAGYNGTIFAYGQTSSGKTHTME 103
Query: 63 --MGSQDNKGIIPRLCDSLFDLIAKQESSELTYKVEVSYMEIYNEKVHDLLDPKANKQSL 120
+G +GIIPR+ + +F+ I E + L + ++VSY EIY +K+ DLLD +K +L
Sbjct: 104 GVIGDSVKQGIIPRIVNDIFNHIYAMEVN-LEFHIKVSYYEIYMDKIRDLLD--VSKVNL 160
Query: 121 KVREHNVLGPYVDGLSQLAVTS 142
V E PYV G ++ V+S
Sbjct: 161 SVHEDKNRVPYVKGATERFVSS 182
>pdb|2KIN|A Chain A, Kinesin (Monomeric) From Rattus Norvegicus
pdb|3KIN|A Chain A, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|C Chain C, Kinesin (Dimeric) From Rattus Norvegicus
Length = 238
Score = 98.2 bits (243), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 55/133 (41%), Positives = 80/133 (60%), Gaps = 6/133 (4%)
Query: 13 YSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYTMMGSQDN---K 69
Y D LP +QE+V++A + I+ + +GYN IFAYGQT SGK++TM G +
Sbjct: 46 YVFDRVLPPNTTQEQVYNACAKQIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPQLM 105
Query: 70 GIIPRLCDSLFDLIAKQESSELTYKVEVSYMEIYNEKVHDLLDPKANKQSLKVREHNVLG 129
GIIPR+ +FD I + + L + ++VSY EIY +K+ DLLD +K +L V E
Sbjct: 106 GIIPRIAHDIFDHIYSMDEN-LEFHIKVSYFEIYLDKIRDLLD--VSKTNLAVHEDKNRV 162
Query: 130 PYVDGLSQLAVTS 142
PYV G ++ V+S
Sbjct: 163 PYVKGCTERFVSS 175
>pdb|1CZ7|A Chain A, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|B Chain B, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|C Chain C, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|D Chain D, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
Length = 406
Score = 97.4 bits (241), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 50/137 (36%), Positives = 82/137 (59%), Gaps = 8/137 (5%)
Query: 4 KTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYTMM 63
+ F+FD F+ L +SQ +F+ + ++ +A GYN CIFAYGQTGSGK+YTM
Sbjct: 100 QIFSFDQVFHPL-------SSQSDIFEMVS-PLIQSALDGYNICIFAYGQTGSGKTYTMD 151
Query: 64 GSQDNKGIIPRLCDSLFDLIAKQESSELTYKVEVSYMEIYNEKVHDLLDPKANKQSLKVR 123
G ++ G+IPR D LFD I + Y+++ +++EIYNE ++DLL + +++
Sbjct: 152 GVPESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMA 211
Query: 124 EHNVLGPYVDGLSQLAV 140
++N YV +++ V
Sbjct: 212 KNNKNDIYVSNITEETV 228
>pdb|1N6M|A Chain A, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
pdb|1N6M|B Chain B, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
Length = 409
Score = 97.4 bits (241), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 50/137 (36%), Positives = 82/137 (59%), Gaps = 8/137 (5%)
Query: 4 KTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYTMM 63
+ F+FD F+ L +SQ +F+ + ++ +A GYN CIFAYGQTGSGK+YTM
Sbjct: 103 QIFSFDQVFHPL-------SSQSDIFEMVS-PLIQSALDGYNICIFAYGQTGSGKTYTMD 154
Query: 64 GSQDNKGIIPRLCDSLFDLIAKQESSELTYKVEVSYMEIYNEKVHDLLDPKANKQSLKVR 123
G ++ G+IPR D LFD I + Y+++ +++EIYNE ++DLL + +++
Sbjct: 155 GVPESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMA 214
Query: 124 EHNVLGPYVDGLSQLAV 140
++N YV +++ V
Sbjct: 215 KNNKNDIYVSNITEETV 231
>pdb|2NCD|A Chain A, Ncd (Non-Claret Disjunctional) Dimer From D. Melanogaster
Length = 420
Score = 97.4 bits (241), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 50/137 (36%), Positives = 82/137 (59%), Gaps = 8/137 (5%)
Query: 4 KTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYTMM 63
+ F+FD F+ L +SQ +F+ + ++ +A GYN CIFAYGQTGSGK+YTM
Sbjct: 114 QIFSFDQVFHPL-------SSQSDIFEMVS-PLIQSALDGYNICIFAYGQTGSGKTYTMD 165
Query: 64 GSQDNKGIIPRLCDSLFDLIAKQESSELTYKVEVSYMEIYNEKVHDLLDPKANKQSLKVR 123
G ++ G+IPR D LFD I + Y+++ +++EIYNE ++DLL + +++
Sbjct: 166 GVPESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMA 225
Query: 124 EHNVLGPYVDGLSQLAV 140
++N YV +++ V
Sbjct: 226 KNNKNDIYVSNITEETV 242
>pdb|3U06|A Chain A, Crystal Structure Of The Kinesin-14 Ncdg347d
pdb|3U06|B Chain B, Crystal Structure Of The Kinesin-14 Ncdg347d
Length = 412
Score = 97.4 bits (241), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 50/137 (36%), Positives = 82/137 (59%), Gaps = 8/137 (5%)
Query: 4 KTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYTMM 63
+ F+FD F+ L +SQ +F+ + ++ +A GYN CIFAYGQTGSGK+YTM
Sbjct: 106 QIFSFDQVFHPL-------SSQSDIFEMVS-PLIQSALDGYNICIFAYGQTGSGKTYTMD 157
Query: 64 GSQDNKGIIPRLCDSLFDLIAKQESSELTYKVEVSYMEIYNEKVHDLLDPKANKQSLKVR 123
G ++ G+IPR D LFD I + Y+++ +++EIYNE ++DLL + +++
Sbjct: 158 GVPESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMA 217
Query: 124 EHNVLGPYVDGLSQLAV 140
++N YV +++ V
Sbjct: 218 KNNKNDIYVSNITEETV 234
>pdb|2VVG|A Chain A, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
pdb|2VVG|B Chain B, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
Length = 350
Score = 96.3 bits (238), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 56/142 (39%), Positives = 81/142 (57%), Gaps = 11/142 (7%)
Query: 1 KPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSY 60
K P+TF FD + D N+ +F A + ++D +G+N+ IFAYGQTG+GK++
Sbjct: 53 KVPRTFTFDAVY---DQTSCNYG----IFQASFKPLIDAVLEGFNSTIFAYGQTGAGKTW 105
Query: 61 TMMGSQDNKGIIPRLCDSLFDLIAKQESSELTYKVEVSYMEIYNEKVHDLLDPKANKQSL 120
TM G+++ G IP LFD I SS + V SY+E+YNE++ DL+ N L
Sbjct: 106 TMGGNKEEPGAIPNSFKHLFDAI-NSSSSNQNFLVIGSYLELYNEEIRDLIK---NNTKL 161
Query: 121 KVREHNVLGPYVDGLSQLAVTS 142
++E G YVDGLS VT+
Sbjct: 162 PLKEDKTRGIYVDGLSMHRVTT 183
>pdb|3B6U|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
pdb|3B6U|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
Length = 372
Score = 95.9 bits (237), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 56/145 (38%), Positives = 84/145 (57%), Gaps = 13/145 (8%)
Query: 3 PKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYTM 62
PKTF FD + D N A Q +++D R ++D+ QG+N IFAYGQTG+GK+YTM
Sbjct: 67 PKTFTFDAVY---DWN----AKQFELYDETFRPLVDSVLQGFNGTIFAYGQTGTGKTYTM 119
Query: 63 MGSQ---DNKGIIPRLCDSLFDLIAKQESSELTYKVEVSYMEIYNEKVHDLLDPKANKQS 119
G + + +G+IP D +F I++ ++ + Y V SY+EIY E++ DLL K+
Sbjct: 120 EGIRGDPEKRGVIPNSFDHIFTHISRSQNQQ--YLVRASYLEIYQEEIRDLLSKDQTKR- 176
Query: 120 LKVREHNVLGPYVDGLSQLAVTSFQ 144
L+++E G YV LS S +
Sbjct: 177 LELKERPDTGVYVKDLSSFVTKSVK 201
>pdb|3L1C|A Chain A, Kinesin-14 Protein Ncd, T436s Mutant
pdb|3L1C|B Chain B, Kinesin-14 Protein Ncd, T436s Mutant
Length = 383
Score = 95.9 bits (237), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 49/137 (35%), Positives = 82/137 (59%), Gaps = 8/137 (5%)
Query: 4 KTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYTMM 63
+ F+FD F+ L +SQ +F+ + ++ +A GYN CIFAYGQ+GSGK+YTM
Sbjct: 103 QIFSFDQVFHPL-------SSQSDIFEMVS-PLIQSALDGYNICIFAYGQSGSGKTYTMD 154
Query: 64 GSQDNKGIIPRLCDSLFDLIAKQESSELTYKVEVSYMEIYNEKVHDLLDPKANKQSLKVR 123
G ++ G+IPR D LFD I + Y+++ +++EIYNE ++DLL + +++
Sbjct: 155 GVPESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMA 214
Query: 124 EHNVLGPYVDGLSQLAV 140
++N YV +++ V
Sbjct: 215 KNNKNDIYVSNITEETV 231
>pdb|1MKJ|A Chain A, Human Kinesin Motor Domain With Docked Neck Linker
Length = 349
Score = 93.6 bits (231), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 56/142 (39%), Positives = 81/142 (57%), Gaps = 13/142 (9%)
Query: 4 KTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYTMM 63
K +AFD F S SQE+V++ + I+ + +GYN IFAYGQT SGK++TM
Sbjct: 44 KPYAFDRVFQS-------STSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTME 96
Query: 64 GSQ---DNKGIIPRLCDSLFDLIAKQESSELTYKVEVSYMEIYNEKVHDLLDPKANKQSL 120
G + GIIPR+ +F+ I + + L + ++VSY EIY +K+ DLLD +K +L
Sbjct: 97 GKLHDPEGMGIIPRIVQDIFNYIYSMDEN-LEFHIKVSYFEIYLDKIRDLLD--VSKTNL 153
Query: 121 KVREHNVLGPYVDGLSQLAVTS 142
V E PYV G ++ V S
Sbjct: 154 SVHEDKNRVPYVKGCTERFVCS 175
>pdb|1BG2|A Chain A, Human Ubiquitous Kinesin Motor Domain
pdb|2P4N|K Chain K, Human Monomeric Kinesin (1bg2) And Bovine Tubulin (1jff)
Docked Into The 9-Angstrom Cryo-Em Map Of
Nucleotide-Free Kinesin Complexed To The Microtubule
Length = 325
Score = 93.2 bits (230), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 56/142 (39%), Positives = 81/142 (57%), Gaps = 13/142 (9%)
Query: 4 KTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYTMM 63
K +AFD F S SQE+V++ + I+ + +GYN IFAYGQT SGK++TM
Sbjct: 44 KPYAFDRVFQS-------STSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTME 96
Query: 64 GSQ---DNKGIIPRLCDSLFDLIAKQESSELTYKVEVSYMEIYNEKVHDLLDPKANKQSL 120
G + GIIPR+ +F+ I + + L + ++VSY EIY +K+ DLLD +K +L
Sbjct: 97 GKLHDPEGMGIIPRIVQDIFNYIYSMDEN-LEFHIKVSYFEIYLDKIRDLLD--VSKTNL 153
Query: 121 KVREHNVLGPYVDGLSQLAVTS 142
V E PYV G ++ V S
Sbjct: 154 SVHEDKNRVPYVKGCTERFVCS 175
>pdb|4ATX|C Chain C, Rigor Kinesin Motor Domain With An Ordered Neck-Linker,
Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em
Map Of Doublecortin-Microtubules Decorated With Kinesin
Length = 340
Score = 93.2 bits (230), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 56/142 (39%), Positives = 81/142 (57%), Gaps = 13/142 (9%)
Query: 4 KTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYTMM 63
K +AFD F S SQE+V++ + I+ + +GYN IFAYGQT SGK++TM
Sbjct: 44 KPYAFDRVFQS-------STSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKNHTME 96
Query: 64 GSQ---DNKGIIPRLCDSLFDLIAKQESSELTYKVEVSYMEIYNEKVHDLLDPKANKQSL 120
G + GIIPR+ +F+ I + + L + ++VSY EIY +K+ DLLD +K +L
Sbjct: 97 GKLHDPEGMGIIPRIVQDIFNYIYSMDEN-LEFHIKVSYFEIYLDKIRDLLD--VSKTNL 153
Query: 121 KVREHNVLGPYVDGLSQLAVTS 142
V E PYV G ++ V S
Sbjct: 154 SVHEDKNRVPYVKGCTERFVCS 175
>pdb|3B6V|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
pdb|3B6V|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
Length = 395
Score = 92.4 bits (228), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 49/137 (35%), Positives = 82/137 (59%), Gaps = 13/137 (9%)
Query: 3 PKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYTM 62
PKTF FD + + + Q ++D R ++D+ QG+N +FAYGQTG+GK+YTM
Sbjct: 67 PKTFTFDAVYDA-------SSKQADLYDETVRPLIDSVLQGFNGTVFAYGQTGTGKTYTM 119
Query: 63 MGSQ---DNKGIIPRLCDSLFDLIAKQESSELTYKVEVSYMEIYNEKVHDLLDPKANKQS 119
G+ + +G+IP + +F I++ ++ + Y V SY+EIY E++ DLL + K+
Sbjct: 120 QGTWVEPELRGVIPNAFEHIFTHISRSQNQQ--YLVRASYLEIYQEEIRDLLSKEPGKR- 176
Query: 120 LKVREHNVLGPYVDGLS 136
L+++E+ G Y+ LS
Sbjct: 177 LELKENPETGVYIKDLS 193
>pdb|3NWN|A Chain A, Crystal Structure Of The Human Kif9 Motor Domain In
Complex With Adp
Length = 359
Score = 90.5 bits (223), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 45/102 (44%), Positives = 68/102 (66%), Gaps = 6/102 (5%)
Query: 13 YSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYTMMGSQDN---K 69
+ LD L + ASQ+ V++ + +D++ A GYN I YGQTG+GK+YTMMG+ +N +
Sbjct: 74 FKLDGVLHD-ASQDLVYETVAKDVVSQALDGYNGTIMCYGQTGAGKTYTMMGATENYKHR 132
Query: 70 GIIPRLCDSLFDLIAKQESSELTYKVEVSYMEIYNEKVHDLL 111
GI+PR +F +I ++ + +T V VSY+EIYNE + DLL
Sbjct: 133 GILPRALQQVFRMIEERPTHAIT--VRVSYLEIYNESLFDLL 172
>pdb|3T0Q|A Chain A, Motor Domain Structure Of The Kar3-Like Kinesin From
Ashbya Gossypii
Length = 349
Score = 87.4 bits (215), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 81/147 (55%), Gaps = 20/147 (13%)
Query: 6 FAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYTMMGS 65
F FD F +P+ N +++F+ + R ++ ++ GYN CIFAYGQTGSGK+YTM+ +
Sbjct: 55 FQFDMIF---EPSHTN----KEIFEEI-RQLVQSSLDGYNVCIFAYGQTGSGKTYTMLNA 106
Query: 66 QDNKGIIPRLCDSLFDLIAKQESSELTYKVEVSYMEIYNE---------KVHDLLDPKAN 116
D G+IP +F A + Y++E Y+EIYNE K HD +D +
Sbjct: 107 GD--GMIPMTLSHIFKWTANLKERGWNYEMECEYIEIYNETILDLLRDFKSHDNIDEILD 164
Query: 117 KQSLKVR-EHNVLGPYVDGLSQLAVTS 142
Q +R +H G Y+ ++++ +TS
Sbjct: 165 SQKHDIRHDHEKQGTYITNVTRMKMTS 191
>pdb|3BFN|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 22
Length = 388
Score = 86.7 bits (213), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 76/136 (55%), Gaps = 10/136 (7%)
Query: 13 YSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYTMMGSQDNKGII 72
Y D ++Q+ ++ + IL + +G NA + AYG TG+GK++TM+GS + G+I
Sbjct: 67 YQFDAFYGERSTQQDIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTHTMLGSPEQPGVI 126
Query: 73 PRLCDSLFDLIAKQ--ESSELTYKVEVSYMEIYNEKVHDLLDPKANKQSLKVREH---NV 127
PR L L ++ E V +SY+EIY EKV DLLDP + L +RE N+
Sbjct: 127 PRALMDLLQLTREEGAEGRPWALSVTMSYLEIYQEKVLDLLDPASG--DLVIREDCRGNI 184
Query: 128 LGPYVDGLSQLAVTSF 143
L P GLSQ ++SF
Sbjct: 185 LIP---GLSQKPISSF 197
>pdb|1F9T|A Chain A, Crystal Structures Of Kinesin Mutants Reveal A Signalling
Pathway For Activation Of The Motor Atpase
Length = 358
Score = 85.1 bits (209), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 64/113 (56%), Gaps = 10/113 (8%)
Query: 6 FAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYTMMGS 65
F FD F D N+ VF +G+ ++ ++ GYN CIFAYGQTGSGK++TM+
Sbjct: 65 FKFDKIFDQQDTNVD-------VFKEVGQ-LVQSSLDGYNVCIFAYGQTGSGKTFTMLNP 116
Query: 66 QDNKGIIPRLCDSLFDLIAKQESSELTYKVEVSYMEIYNEKVHDLLDPKANKQ 118
D GIIP +F+ I K ++ YKV ++EIYNE + DLL N +
Sbjct: 117 GD--GIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNK 167
>pdb|1F9W|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
pdb|1F9W|B Chain B, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 85.1 bits (209), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 64/113 (56%), Gaps = 10/113 (8%)
Query: 6 FAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYTMMGS 65
F FD F D N+ VF +G+ ++ ++ GYN CIFAYGQTGSGK++TM+
Sbjct: 54 FKFDKIFDQQDTNVD-------VFKEVGQ-LVQSSLDGYNVCIFAYGQTGSGKTFTMLNP 105
Query: 66 QDNKGIIPRLCDSLFDLIAKQESSELTYKVEVSYMEIYNEKVHDLLDPKANKQ 118
D GIIP +F+ I K ++ YKV ++EIYNE + DLL N +
Sbjct: 106 GD--GIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNK 156
>pdb|1F9U|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 85.1 bits (209), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 64/113 (56%), Gaps = 10/113 (8%)
Query: 6 FAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYTMMGS 65
F FD F D N+ VF +G+ ++ ++ GYN CIFAYGQTGSGK++TM+
Sbjct: 54 FKFDKIFDQQDTNVD-------VFKEVGQ-LVQSSLDGYNVCIFAYGQTGSGKTFTMLNP 105
Query: 66 QDNKGIIPRLCDSLFDLIAKQESSELTYKVEVSYMEIYNEKVHDLLDPKANKQ 118
D GIIP +F+ I K ++ YKV ++EIYNE + DLL N +
Sbjct: 106 GD--GIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNK 156
>pdb|3KAR|A Chain A, The Motor Domain Of Kinesin-Like Protein Kar3, A
Saccharomyces Cerevisiae Kinesin-Related Protein
Length = 346
Score = 85.1 bits (209), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 64/113 (56%), Gaps = 10/113 (8%)
Query: 6 FAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYTMMGS 65
F FD F D N+ VF +G+ ++ ++ GYN CIFAYGQTGSGK++TM+
Sbjct: 53 FKFDKIFDQQDTNVD-------VFKEVGQ-LVQSSLDGYNVCIFAYGQTGSGKTFTMLNP 104
Query: 66 QDNKGIIPRLCDSLFDLIAKQESSELTYKVEVSYMEIYNEKVHDLLDPKANKQ 118
D GIIP +F+ I K ++ YKV ++EIYNE + DLL N +
Sbjct: 105 GD--GIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNK 155
>pdb|1F9V|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 85.1 bits (209), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 64/113 (56%), Gaps = 10/113 (8%)
Query: 6 FAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYTMMGS 65
F FD F D N+ VF +G+ ++ ++ GYN CIFAYGQTGSGK++TM+
Sbjct: 54 FKFDKIFDQQDTNVD-------VFKEVGQ-LVQSSLDGYNVCIFAYGQTGSGKTFTMLNP 105
Query: 66 QDNKGIIPRLCDSLFDLIAKQESSELTYKVEVSYMEIYNEKVHDLLDPKANKQ 118
D GIIP +F+ I K ++ YKV ++EIYNE + DLL N +
Sbjct: 106 GD--GIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNK 156
>pdb|2REP|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member C1
Length = 376
Score = 84.7 bits (208), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/145 (37%), Positives = 73/145 (50%), Gaps = 16/145 (11%)
Query: 2 PPK-TFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSY 60
PP+ F+FD F P + Q++VF+ + ++ +A GY CIFAYGQTGSGK++
Sbjct: 80 PPRHDFSFDRVF-------PPGSGQDEVFEEIAM-LVQSALDGYPVCIFAYGQTGSGKTF 131
Query: 61 TMMGSQDN----KGIIPRLCDSLFDLIAKQESSELTYKVEVSYMEIYNEKVHDLLDPKAN 116
TM G +G+IPR LF + + TY SY+EIYNE V DLL
Sbjct: 132 TMEGGPGGDPQLEGLIPRALRHLFSVAQELSGQGWTYSFVASYVEIYNETVRDLLATGTR 191
Query: 117 KQSLKVREHNVLGPYVDGLSQLAVT 141
K E GP G +L VT
Sbjct: 192 KGQGGECEIRRAGP---GSEELTVT 213
>pdb|4GKR|A Chain A, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
pdb|4GKR|B Chain B, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
Length = 371
Score = 84.0 bits (206), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 45/113 (39%), Positives = 65/113 (57%), Gaps = 10/113 (8%)
Query: 6 FAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYTMMGS 65
F FD F + N +++F +G+ ++ ++ GYN CIFAYGQTGSGK+YTM+
Sbjct: 76 FKFDKIFDQQETN-------DEIFKEVGQ-LIQSSLDGYNVCIFAYGQTGSGKTYTMLNP 127
Query: 66 QDNKGIIPRLCDSLFDLIAKQESSELTYKVEVSYMEIYNEKVHDLLDPKANKQ 118
D GI+P + +F I K + +YKV ++EIYNE + DLL A Q
Sbjct: 128 GD--GIVPATINHIFSWIDKLAARGWSYKVSCEFIEIYNENIVDLLRSGAPSQ 178
>pdb|2H58|A Chain A, Crystal Structure Of The Kifc3 Motor Domain In Complex
With Adp
Length = 330
Score = 83.6 bits (205), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 58/148 (39%), Positives = 84/148 (56%), Gaps = 19/148 (12%)
Query: 3 PKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYTM 62
P +F D F P ASQ+ VF + + ++ + G+N CIFAYGQTG+GK+YTM
Sbjct: 47 PVSFELDKVF---SPQ----ASQQDVFQEV-QALVTSCIDGFNVCIFAYGQTGAGKTYTM 98
Query: 63 MGSQDNKGIIPRLCDSLFDLIAKQESSELTYKVEVSYMEIYNEKVHDLLDPKANKQSLKV 122
G+ +N GI R LF + ++++S+ Y + VS EIYNE + DLL K ++ L++
Sbjct: 99 EGTAENPGINQRALQLLFSEV-QEKASDWEYTITVSAAEIYNEVLRDLLG-KEPQEKLEI 156
Query: 123 REHNVLGPYVDGLSQLAV---TSFQARA 147
R L P DG QL V T FQ ++
Sbjct: 157 R----LCP--DGSGQLYVPGLTEFQVQS 178
>pdb|4A14|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 83.2 bits (204), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 66/108 (61%), Gaps = 8/108 (7%)
Query: 23 ASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYTMMGS------QDNKGIIPRLC 76
A QE V+ A + +L+ F+G+NA +FAYGQTGSGK+YTM + +D +GI+PR
Sbjct: 62 AGQEAVYQACVQPLLEAFFEGFNATVFAYGQTGSGKTYTMGEASVASLLEDEQGIVPRAM 121
Query: 77 DSLFDLIAKQESSELTYKVEVSYMEIYNEKVHDLLDPKANKQSLKVRE 124
F LI E+ L V VSY+E+Y E+ DLL+ + +++RE
Sbjct: 122 AEAFKLI--DENDLLDCLVHVSYLEVYKEEFRDLLEVGTASRDIQLRE 167
>pdb|2XT3|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 82.8 bits (203), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 66/108 (61%), Gaps = 8/108 (7%)
Query: 23 ASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYTMMGS------QDNKGIIPRLC 76
A QE V+ A + +L+ F+G+NA +FAYGQTGSGK+YTM + +D +GI+PR
Sbjct: 62 AGQEAVYQACVQPLLEAFFEGFNATVFAYGQTGSGKTYTMGEASVASLLEDEQGIVPRAM 121
Query: 77 DSLFDLIAKQESSELTYKVEVSYMEIYNEKVHDLLDPKANKQSLKVRE 124
F LI E+ L V VSY+E+Y E+ DLL+ + +++RE
Sbjct: 122 AEAFKLI--DENDLLDCLVHVSYLEVYKEEFRDLLEVGTASRDIQLRE 167
>pdb|4ETP|A Chain A, C-Terminal Motor And Motor Homology Domain Of Kar3vik1
Fused To A Synthetic Heterodimeric Coiled Coil
Length = 403
Score = 82.8 bits (203), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 45/113 (39%), Positives = 63/113 (55%), Gaps = 10/113 (8%)
Query: 6 FAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYTMMGS 65
F FD F D N+ VF +G+ ++ ++ GYN IFAYGQTGSGK++TM+
Sbjct: 110 FKFDKIFDQQDTNVD-------VFKEVGQ-LVQSSLDGYNVAIFAYGQTGSGKTFTMLNP 161
Query: 66 QDNKGIIPRLCDSLFDLIAKQESSELTYKVEVSYMEIYNEKVHDLLDPKANKQ 118
D GIIP +F+ I K ++ YKV ++EIYNE + DLL N +
Sbjct: 162 GD--GIIPSTISHIFNWINKLKTKGWDYKVNAEFIEIYNENIVDLLRSDNNNK 212
>pdb|3H4S|A Chain A, Structure Of The Complex Of A Mitotic Kinesin With Its
Calcium Binding Regulator
Length = 386
Score = 81.3 bits (199), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 80/123 (65%), Gaps = 3/123 (2%)
Query: 23 ASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYTMMGSQDNKGIIPRLCDSLFDL 82
ASQ+ +F+ + ++ +A GYN CIFAYGQTGSGK++T+ G + N G+ PR LF++
Sbjct: 67 ASQDDIFEDT-KYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGHESNPGLTPRATKELFNI 125
Query: 83 IAKQESSELTYKVEVSYMEIYNEKVHDLLDPK-ANKQSLKVREHNVLGPYVDGLSQLAVT 141
+ K++S ++ ++ +E+Y + + DLL PK A + L++++ + +V+ ++ + ++
Sbjct: 126 L-KRDSKRFSFSLKAYMVELYQDTLVDLLLPKSARRLKLEIKKDSKGMVFVENVTTIPIS 184
Query: 142 SFQ 144
+ +
Sbjct: 185 TLE 187
>pdb|4AQV|C Chain C, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian
Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom
Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain
In The Ampppnp State.
pdb|4AQW|C Chain C, Model Of Human Kinesin-5 Motor Domain (1ii6, 3hqd) And
Mammalian Tubulin Heterodimer (1jff) Docked Into The
9.5- Angstrom Cryo-em Map Of Microtubule-bound Kinesin-5
Motor Domain In The Rigor State
Length = 373
Score = 80.5 bits (197), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 51/151 (33%), Positives = 79/151 (52%), Gaps = 24/151 (15%)
Query: 4 KTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYTMM 63
KT+ FD F + Q V+ ++ ILD GYNA IFAYGQTG+GK++TM
Sbjct: 64 KTYTFDMVFGA-------STKQIDVYRSVVAPILDEVIMGYNATIFAYGQTGTGKTFTME 116
Query: 64 GSQDNK-----------GIIPRLCDSLFDLIAKQESSELTYKVEVSYMEIYNEKVHDLLD 112
G + GIIPR +F+ + + + V+VS +EIYNE++ DLL+
Sbjct: 117 GERSPNEEYCWEEDPLAGIIPRTLHQIFEKLTDNGTE---FSVKVSLLEIYNEELFDLLN 173
Query: 113 PKAN-KQSLKVRE--HNVLGPYVDGLSQLAV 140
P ++ + L++ + N G + GL ++ V
Sbjct: 174 PSSDVSERLQMFDDPRNKRGVIIKGLEEITV 204
>pdb|1SDM|A Chain A, Crystal Structure Of Kinesin-Like Calmodulin Binding
Protein
pdb|3CNZ|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3CNZ|B Chain B, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|C Chain C, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
Length = 369
Score = 78.2 bits (191), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 86/143 (60%), Gaps = 10/143 (6%)
Query: 3 PKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYTM 62
K +D F D N A+Q+ VF+ + ++ +A GYN CIFAYGQTGSGK++T+
Sbjct: 46 AKQHMYDRVF---DGN----ATQDDVFEDT-KYLVQSAVDGYNVCIFAYGQTGSGKTFTI 97
Query: 63 MGSQDNKGIIPRLCDSLFDLIAKQESSELTYKVEVSYMEIYNEKVHDLLDPK-ANKQSLK 121
G+ N G+ PR LF I K++S++ ++ ++ +E+Y + + DLL PK A + L
Sbjct: 98 YGADSNPGLTPRAMSELFR-IMKKDSNKFSFSLKAYMVELYQDTLVDLLLPKQAKRLKLD 156
Query: 122 VREHNVLGPYVDGLSQLAVTSFQ 144
+++ + V+ ++ +++++++
Sbjct: 157 IKKDSKGMVSVENVTVVSISTYE 179
>pdb|3HQD|A Chain A, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3HQD|B Chain B, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3KEN|A Chain A, Human Eg5 In Complex With S-Trityl-L-Cysteine
Length = 369
Score = 77.0 bits (188), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 78/151 (51%), Gaps = 24/151 (15%)
Query: 4 KTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYTMM 63
KT+ FD F + Q V+ ++ ILD GYN IFAYGQTG+GK++TM
Sbjct: 64 KTYTFDMVFGA-------STKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTME 116
Query: 64 GSQDNK-----------GIIPRLCDSLFDLIAKQESSELTYKVEVSYMEIYNEKVHDLLD 112
G + GIIPR +F+ + + + V+VS +EIYNE++ DLL+
Sbjct: 117 GERSPNEEYTWEEDPLAGIIPRTLHQIFEKLTDNGTE---FSVKVSLLEIYNEELFDLLN 173
Query: 113 PKAN-KQSLKVRE--HNVLGPYVDGLSQLAV 140
P ++ + L++ + N G + GL ++ V
Sbjct: 174 PSSDVSERLQMFDDPRNKRGVIIKGLEEITV 204
>pdb|1II6|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1II6|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1YRS|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|1YRS|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2FME|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2FME|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2GM1|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|D Chain D, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|E Chain E, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2G1Q|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2G1Q|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2PG2|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2PG2|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2UYI|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYI|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYM|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|2UYM|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|3K5E|A Chain A, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K5E|B Chain B, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K3B|A Chain A, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3K3B|B Chain B, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3L9H|A Chain A, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|3L9H|B Chain B, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|2X7C|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7C|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7D|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7D|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7E|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2X7E|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2WOG|A Chain A, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|B Chain B, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|C Chain C, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2X2R|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2XAE|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|4A50|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
2-amino-5-(3-methylphenyl)-5,5-diphenylpentanoic Acid
pdb|4A51|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|D Chain D, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|E Chain E, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|F Chain F, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|G Chain G, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A5Y|A Chain A, Eg5-Inhibitor Complex
pdb|4A5Y|B Chain B, Eg5-Inhibitor Complex
pdb|4A5Y|C Chain C, Eg5-Inhibitor Complex
Length = 368
Score = 77.0 bits (188), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 78/151 (51%), Gaps = 24/151 (15%)
Query: 4 KTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYTMM 63
KT+ FD F + Q V+ ++ ILD GYN IFAYGQTG+GK++TM
Sbjct: 64 KTYTFDMVFGA-------STKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTME 116
Query: 64 GSQDNK-----------GIIPRLCDSLFDLIAKQESSELTYKVEVSYMEIYNEKVHDLLD 112
G + GIIPR +F+ + + + V+VS +EIYNE++ DLL+
Sbjct: 117 GERSPNEEYTWEEDPLAGIIPRTLHQIFEKLTDNGTE---FSVKVSLLEIYNEELFDLLN 173
Query: 113 PKAN-KQSLKVRE--HNVLGPYVDGLSQLAV 140
P ++ + L++ + N G + GL ++ V
Sbjct: 174 PSSDVSERLQMFDDPRNKRGVIIKGLEEITV 204
>pdb|4A28|A Chain A, Eg5-2
pdb|4A28|B Chain B, Eg5-2
Length = 368
Score = 77.0 bits (188), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 78/151 (51%), Gaps = 24/151 (15%)
Query: 4 KTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYTMM 63
KT+ FD F + Q V+ ++ ILD GYN IFAYGQTG+GK++TM
Sbjct: 64 KTYTFDMVFGA-------STKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTME 116
Query: 64 GSQDNK-----------GIIPRLCDSLFDLIAKQESSELTYKVEVSYMEIYNEKVHDLLD 112
G + GIIPR +F+ + + + V+VS +EIYNE++ DLL+
Sbjct: 117 GERSPNEEYTWEEDPLDGIIPRTLHQIFEKLTDNGTE---FSVKVSLLEIYNEELFDLLN 173
Query: 113 PKAN-KQSLKVRE--HNVLGPYVDGLSQLAV 140
P ++ + L++ + N G + GL ++ V
Sbjct: 174 PSSDVSERLQMFDDPRNKRGVIIKGLEEITV 204
>pdb|1Q0B|A Chain A, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|1Q0B|B Chain B, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|2FKY|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FKY|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FL2|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL2|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL6|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2FL6|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2IEH|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2IEH|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2Q2Y|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Y|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Z|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|2Q2Z|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|3CJO|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 30
pdb|3CJO|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 30
Length = 367
Score = 77.0 bits (188), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 78/151 (51%), Gaps = 24/151 (15%)
Query: 4 KTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYTMM 63
KT+ FD F + Q V+ ++ ILD GYN IFAYGQTG+GK++TM
Sbjct: 63 KTYTFDMVFGA-------STKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTME 115
Query: 64 GSQDNK-----------GIIPRLCDSLFDLIAKQESSELTYKVEVSYMEIYNEKVHDLLD 112
G + GIIPR +F+ + + + V+VS +EIYNE++ DLL+
Sbjct: 116 GERSPNEEYTWEEDPLAGIIPRTLHQIFEKLTDNGTE---FSVKVSLLEIYNEELFDLLN 172
Query: 113 PKAN-KQSLKVRE--HNVLGPYVDGLSQLAV 140
P ++ + L++ + N G + GL ++ V
Sbjct: 173 PSSDVSERLQMFDDPRNKRGVIIKGLEEITV 203
>pdb|4A1Z|A Chain A, Eg5-1
pdb|4A1Z|B Chain B, Eg5-1
Length = 368
Score = 77.0 bits (188), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 78/151 (51%), Gaps = 24/151 (15%)
Query: 4 KTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYTMM 63
KT+ FD F + Q V+ ++ ILD GYN IFAYGQTG+GK++TM
Sbjct: 64 KTYTFDMVFGA-------STKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTME 116
Query: 64 GSQDNK-----------GIIPRLCDSLFDLIAKQESSELTYKVEVSYMEIYNEKVHDLLD 112
G + GIIPR +F+ + + + V+VS +EIYNE++ DLL+
Sbjct: 117 GERSPNEEYTWEEVPLAGIIPRTLHQIFEKLTDNGTE---FSVKVSLLEIYNEELFDLLN 173
Query: 113 PKAN-KQSLKVRE--HNVLGPYVDGLSQLAV 140
P ++ + L++ + N G + GL ++ V
Sbjct: 174 PSSDVSERLQMFDDPRNKRGVIIKGLEEITV 204
>pdb|3ZCW|A Chain A, Eg5 - New Allosteric Binding Site
Length = 348
Score = 76.6 bits (187), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 78/151 (51%), Gaps = 24/151 (15%)
Query: 4 KTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYTMM 63
KT+ FD F + Q V+ ++ ILD GYN IFAYGQTG+GK++TM
Sbjct: 49 KTYTFDMVFGA-------STKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTME 101
Query: 64 GSQDNK-----------GIIPRLCDSLFDLIAKQESSELTYKVEVSYMEIYNEKVHDLLD 112
G + GIIPR +F+ + + + V+VS +EIYNE++ DLL+
Sbjct: 102 GERSPNEEYTWEEDPLAGIIPRTLHQIFEKLTDNGTE---FSVKVSLLEIYNEELFDLLN 158
Query: 113 PKAN-KQSLKVRE--HNVLGPYVDGLSQLAV 140
P ++ + L++ + N G + GL ++ V
Sbjct: 159 PSSDVSERLQMFDDPRNKRGVIIKGLEEITV 189
>pdb|4AP0|A Chain A, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|B Chain B, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|C Chain C, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|D Chain D, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
Length = 370
Score = 76.6 bits (187), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 78/151 (51%), Gaps = 24/151 (15%)
Query: 4 KTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYTMM 63
KT+ FD F + Q V+ ++ ILD GYN IFAYGQTG+GK++TM
Sbjct: 66 KTYTFDMVFGA-------STKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTME 118
Query: 64 GSQDNK-----------GIIPRLCDSLFDLIAKQESSELTYKVEVSYMEIYNEKVHDLLD 112
G + GIIPR +F+ + + + V+VS +EIYNE++ DLL+
Sbjct: 119 GERSPNEEYTWEEDPLAGIIPRTLHQIFEKLTDNGTE---FSVKVSLLEIYNEELFDLLN 175
Query: 113 PKAN-KQSLKVRE--HNVLGPYVDGLSQLAV 140
P ++ + L++ + N G + GL ++ V
Sbjct: 176 PSSDVSERLQMFDDPRNKRGVIIKGLEEITV 206
>pdb|1X88|A Chain A, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
pdb|1X88|B Chain B, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
Length = 359
Score = 76.6 bits (187), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 78/151 (51%), Gaps = 24/151 (15%)
Query: 4 KTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYTMM 63
KT+ FD F + Q V+ ++ ILD GYN IFAYGQTG+GK++TM
Sbjct: 55 KTYTFDMVFGA-------STKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTME 107
Query: 64 GSQDNK-----------GIIPRLCDSLFDLIAKQESSELTYKVEVSYMEIYNEKVHDLLD 112
G + GIIPR +F+ + + + V+VS +EIYNE++ DLL+
Sbjct: 108 GERSPNEEYTWEEDPLAGIIPRTLHQIFEKLTDNGTE---FSVKVSLLEIYNEELFDLLN 164
Query: 113 PKAN-KQSLKVRE--HNVLGPYVDGLSQLAV 140
P ++ + L++ + N G + GL ++ V
Sbjct: 165 PSSDVSERLQMFDDPRNKRGVIIKGLEEITV 195
>pdb|3LRE|A Chain A, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
pdb|3LRE|B Chain B, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
Length = 355
Score = 75.1 bits (183), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/131 (34%), Positives = 69/131 (52%), Gaps = 11/131 (8%)
Query: 6 FAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYTMMGS 65
F FD F ++Q +VF+ + IL + GYN + AYG TG+GK++TM+GS
Sbjct: 74 FVFDAVF-------DETSTQSEVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTMLGS 126
Query: 66 QDNKGIIPRLCDSLFDLIAKQESSELTYKVEVSYMEIYNEKVHDLLDPKANKQSLKVREH 125
D G++ L+ + + + ++ VSY+E+YNE++ DLL N L VRE
Sbjct: 127 ADEPGVMYLTMLHLYKCMDEIKEEKIC-STAVSYLEVYNEQIRDLL---VNSGPLAVRED 182
Query: 126 NVLGPYVDGLS 136
G V GL+
Sbjct: 183 TQKGVVVHGLT 193
>pdb|2WBE|C Chain C, Kinesin-5-Tubulin Complex With Amppnp
Length = 373
Score = 74.3 bits (181), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 65/122 (53%), Gaps = 21/122 (17%)
Query: 1 KPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSY 60
K K F FD F P + Q V+ + +++ GYN +FAYGQTG+GK++
Sbjct: 64 KLTKKFTFDRSF---GPE----SKQCDVYSVVVSPLIEEVLNGYNCTVFAYGQTGTGKTH 116
Query: 61 TMMGSQDNK-----------GIIPRLCDSLFDLIAKQESSELTYKVEVSYMEIYNEKVHD 109
TM+G++ + GIIPR LFD + E+ Y + +SY+E+YNE++ D
Sbjct: 117 TMVGNETAELKSSWEDDSDIGIIPRALSHLFDELRMM---EVEYTMRISYLELYNEELCD 173
Query: 110 LL 111
LL
Sbjct: 174 LL 175
>pdb|3DC4|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Adp
pdb|3DCB|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Amppnp
pdb|3DCO|N Chain N, Drosophila Nod (3dc4) And Bovine Tubulin (1jff) Docked
Into The 11-Angstrom Cryo-Em Map Of Nucleotide-Free Nod
Complexed To The Microtubule
Length = 344
Score = 73.6 bits (179), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 66/113 (58%), Gaps = 14/113 (12%)
Query: 6 FAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYTMMGS 65
F FDH F P SQ++++ AL ++D +G+ AYGQTG+GKSY+M +
Sbjct: 63 FHFDHAF-------PATISQDEMYQALILPLVDKLLEGFQCTALAYGQTGTGKSYSMGMT 115
Query: 66 ------QDNKGIIPRLCDSLFDLI-AKQESSELTYKVEVSYMEIYNEKVHDLL 111
++ GI+PR +F+ + A+QE+++ +V S++EIYNEK DLL
Sbjct: 116 PPGEILPEHLGILPRALGDIFERVTARQENNKDAIQVYASFIEIYNEKPFDLL 168
>pdb|3PXN|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Kin10NOD IN Complex With Divalent Manganese And Adp
Length = 344
Score = 73.6 bits (179), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 66/113 (58%), Gaps = 14/113 (12%)
Query: 6 FAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYTMMGS 65
F FDH F P SQ++++ AL ++D +G+ AYGQTG+GKSY+M +
Sbjct: 63 FHFDHAF-------PATISQDEMYQALILPLVDKLLEGFQCTALAYGQTGTGKSYSMGMT 115
Query: 66 ------QDNKGIIPRLCDSLFDLI-AKQESSELTYKVEVSYMEIYNEKVHDLL 111
++ GI+PR +F+ + A+QE+++ +V S++EIYNEK DLL
Sbjct: 116 PPGEILPEHLGILPRALGDIFERVTARQENNKDAIQVYASFIEIYNEKPFDLL 168
>pdb|4H1G|A Chain A, Structure Of Candida Albicans Kar3 Motor Domain Fused To
Maltose- Binding Protein
Length = 715
Score = 72.0 bits (175), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 60/107 (56%), Gaps = 3/107 (2%)
Query: 8 FDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYTMMGSQD 67
F + + D S + VF+ L + ++ + G N C+FAYGQTGSGK++TM S
Sbjct: 427 FSNLRFLFDKIFEREQSNDLVFEELSQ-LIQCSLDGTNVCVFAYGQTGSGKTFTM--SHP 483
Query: 68 NKGIIPRLCDSLFDLIAKQESSELTYKVEVSYMEIYNEKVHDLLDPK 114
G+IP +F+ I + + +Y V ++EIYNE + DLL+PK
Sbjct: 484 TNGMIPLSLKKIFNDIEELKEKGWSYTVRGKFIEIYNEAIVDLLNPK 530
>pdb|1V8J|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With Mg-adp
pdb|1V8K|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With
Mg-Amppnp
Length = 410
Score = 69.3 bits (168), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 54/144 (37%), Positives = 72/144 (50%), Gaps = 16/144 (11%)
Query: 4 KTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYTMM 63
+ F FD F AS E V+ R ++ F+G A FAYGQTGSGK++TM
Sbjct: 121 QAFCFDFAF-------DETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMG 173
Query: 64 G-----SQD-NKGIIPRLCDSLFDLIAKQESSELTYKVEVSYMEIYNEKVHDLLDPKANK 117
G SQ+ +KGI +F L + L +V V++ EIYN KV DLL+ KA
Sbjct: 174 GDLSGKSQNASKGIYAMASRDVFLLKNQPRYRNLNLEVYVTFFEIYNGKVFDLLNKKAK- 232
Query: 118 QSLKVREHNVLGPYVDGLSQLAVT 141
L+V E + V GL + VT
Sbjct: 233 --LRVLEDSRQQVQVVGLQEYLVT 254
>pdb|3EDL|D Chain D, Kinesin13-Microtubule Ring Complex
Length = 331
Score = 69.3 bits (168), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 54/144 (37%), Positives = 72/144 (50%), Gaps = 16/144 (11%)
Query: 4 KTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYTMM 63
+ F FD F AS E V+ R ++ F+G A FAYGQTGSGK++TM
Sbjct: 49 QAFCFDFAF-------DETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMG 101
Query: 64 G-----SQD-NKGIIPRLCDSLFDLIAKQESSELTYKVEVSYMEIYNEKVHDLLDPKANK 117
G SQ+ +KGI +F L + L +V V++ EIYN KV DLL+ KA
Sbjct: 102 GDLSGKSQNASKGIYAMASRDVFLLKNQPRYRNLNLEVYVTFFEIYNGKVFDLLNKKAK- 160
Query: 118 QSLKVREHNVLGPYVDGLSQLAVT 141
L+V E + V GL + VT
Sbjct: 161 --LRVLEDSRQQVQVVGLQEYLVT 182
>pdb|2GRY|A Chain A, Crystal Structure Of The Human Kif2 Motor Domain In
Complex With Adp
Length = 420
Score = 68.6 bits (166), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 76/149 (51%), Gaps = 24/149 (16%)
Query: 4 KTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYTMM 63
+TF FD Y+ D + PN E V+ R +++ F+ A FAYGQTGSGK++TM
Sbjct: 139 QTFRFD---YAFDDSAPN----EMVYRFTARPLVETIFERGMATCFAYGQTGSGKTHTMG 191
Query: 64 G-----SQD-NKGIIPRLCDSLFDLIAKQESSELTYKVEVSYMEIYNEKVHDLLDPKANK 117
G +QD +KGI +F ++ K +L +V ++ EIY+ KV DLL+ K
Sbjct: 192 GDFSGKNQDCSKGIYALAARDVFLMLKKPNYKKLELQVYATFFEIYSGKVFDLLNRKTK- 250
Query: 118 QSLKVREHNVLGPYVDGLSQLAVTSFQAR 146
L+V E DG Q+ V Q R
Sbjct: 251 --LRVLE--------DGKQQVQVVGLQER 269
>pdb|2HEH|A Chain A, Crystal Structure Of The Kif2c Motor Domain (Casp Target)
Length = 387
Score = 64.7 bits (156), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 69/147 (46%), Gaps = 24/147 (16%)
Query: 4 KTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYTMM 63
+ F FD F AS E V+ R ++ F+G A FAYGQTGSGK++TM
Sbjct: 101 QAFCFDFAF-------DETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMG 153
Query: 64 G------SQDNKGIIPRLCDSLFDLIAKQESSELTYKVEVSYMEIYNEKVHDLLDPKANK 117
G +KGI +F L + +L +V V++ EIYN K+ DLL+ KA
Sbjct: 154 GDLSGKAQNASKGIYAMASRDVFLLKNQPCYRKLGLEVYVTFFEIYNGKLFDLLNKKAK- 212
Query: 118 QSLKVREHNVLGPYVDGLSQLAVTSFQ 144
L+V E DG Q+ V Q
Sbjct: 213 --LRVLE--------DGKQQVQVVGLQ 229
>pdb|1RY6|A Chain A, Crystal Structure Of Internal Kinesin Motor Domain
Length = 360
Score = 53.9 bits (128), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 54/114 (47%), Gaps = 12/114 (10%)
Query: 6 FAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYTMMGS 65
F D F D + NF E L D+ +N G FAYGQTGSGK+YTM+GS
Sbjct: 52 FIVDKVF---DDTVDNFTVYENTIKPLIIDLYEN---GCVCSCFAYGQTGSGKTYTMLGS 105
Query: 66 Q-----DNKGIIPRLCDSLFDLIAKQESSELTYKVEVSYMEIYNEKVHDLLDPK 114
Q D GI +F + + T + +S+ EIY K++DLL +
Sbjct: 106 QPYGQSDTPGIFQYAAGDIFTFLNIYDKDN-TKGIFISFYEIYCGKLYDLLQKR 158
>pdb|3NV9|A Chain A, Crystal Structure Of Entamoeba Histolytica Malic Enzyme
pdb|3NV9|B Chain B, Crystal Structure Of Entamoeba Histolytica Malic Enzyme
Length = 487
Score = 27.3 bits (59), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/94 (18%), Positives = 41/94 (43%), Gaps = 3/94 (3%)
Query: 34 RDILDNAFQGYNACIFAYGQTGSGKSYTMMGSQDNKGIIPRLCDSLFDLIAKQESSELTY 93
R I DN + + + + ++G+ D GI P+ D+ + +
Sbjct: 376 RKITDNMAIAASRALAEFAEKRGINPDNIIGTMDEPGIFPK---EAADVAMQAIKDGVAR 432
Query: 94 KVEVSYMEIYNEKVHDLLDPKANKQSLKVREHNV 127
++++ ++Y+ HD+ + + + Q L+ +H V
Sbjct: 433 VTDLTWQQVYDIAEHDIKEARESAQLLQDSKHIV 466
>pdb|3VKH|A Chain A, X-Ray Structure Of A Functional Full-Length Dynein Motor
Domain
pdb|3VKH|B Chain B, X-Ray Structure Of A Functional Full-Length Dynein Motor
Domain
Length = 3367
Score = 27.3 bits (59), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 51 YGQTGSGKSYTM--MGSQDNKGIIPRLCDSLFDLIA 84
+G G+GK+ T+ +GSQ + ++ CD FDL A
Sbjct: 610 FGPAGTGKTETVKALGSQLGRFVLVFCCDEGFDLQA 645
>pdb|3VKG|A Chain A, X-Ray Structure Of An Mtbd Truncation Mutant Of Dynein
Motor Domain
pdb|3VKG|B Chain B, X-Ray Structure Of An Mtbd Truncation Mutant Of Dynein
Motor Domain
Length = 3245
Score = 27.3 bits (59), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 51 YGQTGSGKSYTM--MGSQDNKGIIPRLCDSLFDLIA 84
+G G+GK+ T+ +GSQ + ++ CD FDL A
Sbjct: 610 FGPAGTGKTETVKALGSQLGRFVLVFCCDEGFDLQA 645
>pdb|1MNH|A Chain A, Interactions Among Residues Cd3, E7, E10 And E11 In
Myoglobins: Attempts To Simulate The O2 And Co Binding
Properties Of Aplysia Myoglobin
Length = 153
Score = 26.6 bits (57), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 45/94 (47%), Gaps = 12/94 (12%)
Query: 33 GRDILDNAFQGYNACIFAYGQTGSGKSY-TMMGSQDNKGIIPRLCDSLFDLIAKQ--ESS 89
G+++L F+G+ + + + KS M S+D K + R+ +L ++ K+ +
Sbjct: 25 GQEVLIRLFKGHPETLEKFDKFKHLKSEDEMKASEDLKKVGNRVLTALGGILKKKGHHEA 84
Query: 90 ELT---------YKVEVSYMEIYNEKVHDLLDPK 114
ELT +K+ V Y+E +E + +L K
Sbjct: 85 ELTPLAQSHATKHKIPVKYLEFISEAIIQVLQSK 118
>pdb|2GK1|A Chain A, X-Ray Crystal Structure Of Ngt-Bound Hexa
pdb|2GK1|C Chain C, X-Ray Crystal Structure Of Ngt-Bound Hexa
pdb|2GK1|E Chain E, X-Ray Crystal Structure Of Ngt-Bound Hexa
pdb|2GK1|G Chain G, X-Ray Crystal Structure Of Ngt-Bound Hexa
pdb|2GJX|A Chain A, Crystallographic Structure Of Human Beta-Hexosaminidase
A
pdb|2GJX|D Chain D, Crystallographic Structure Of Human Beta-Hexosaminidase
A
pdb|2GJX|E Chain E, Crystallographic Structure Of Human Beta-Hexosaminidase
A
pdb|2GJX|H Chain H, Crystallographic Structure Of Human Beta-Hexosaminidase
A
Length = 507
Score = 26.6 bits (57), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 35/83 (42%), Gaps = 8/83 (9%)
Query: 3 PKTFAFDHCFYSLDPNLPNFASQEKVFDAL--GRDILDNAFQGYNACIFAYGQTG----S 56
P+ F Y L PN NF Q V A G +LD AFQ Y +F G +
Sbjct: 5 PQNFQTSDQRYVLYPN--NFQFQYDVSSAAQPGCSVLDEAFQRYRDLLFGSGSWPRPYLT 62
Query: 57 GKSYTMMGSQDNKGIIPRLCDSL 79
GK +T+ + ++ C+ L
Sbjct: 63 GKRHTLEKNVLVVSVVTPGCNQL 85
>pdb|3QMZ|A Chain A, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
pdb|3QMZ|B Chain B, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
Length = 2486
Score = 26.6 bits (57), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Query: 36 ILDNAFQGYNACIFAYGQTGSGKSYTMMGSQDNKGIIPRL--CDSLFD 81
+ D+ Q Y C F G G+GK+ T+ N G + + CD FD
Sbjct: 419 LTDSLHQKYGGCFF--GPAGTGKTETVKAFGQNLGRVVVVFNCDDSFD 464
>pdb|4AI6|A Chain A, Dynein Motor Domain - Adp Complex
pdb|4AI6|B Chain B, Dynein Motor Domain - Adp Complex
pdb|4AKG|A Chain A, Dynein Motor Domain - Atp Complex
pdb|4AKG|B Chain B, Dynein Motor Domain - Atp Complex
pdb|4AKH|A Chain A, Dynein Motor Domain - Amppnp Complex
pdb|4AKH|B Chain B, Dynein Motor Domain - Amppnp Complex
pdb|4AKI|A Chain A, Dynein Motor Domain - Luac Derivative
pdb|4AKI|B Chain B, Dynein Motor Domain - Luac Derivative
Length = 2695
Score = 26.2 bits (56), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Query: 36 ILDNAFQGYNACIFAYGQTGSGKSYTMMGSQDNKGIIPRL--CDSLFD 81
+ D+ Q Y C F G G+GK+ T+ N G + + CD FD
Sbjct: 638 LTDSLHQKYGGCFF--GPAGTGKTETVKAFGQNLGRVVVVFNCDDSFD 683
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,678,407
Number of Sequences: 62578
Number of extensions: 178529
Number of successful extensions: 560
Number of sequences better than 100.0: 65
Number of HSP's better than 100.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 430
Number of HSP's gapped (non-prelim): 65
length of query: 151
length of database: 14,973,337
effective HSP length: 90
effective length of query: 61
effective length of database: 9,341,317
effective search space: 569820337
effective search space used: 569820337
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)