Query psy12524
Match_columns 151
No_of_seqs 131 out of 1087
Neff 8.2
Searched_HMMs 46136
Date Fri Aug 16 21:33:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12524.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12524hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4280|consensus 100.0 6.2E-42 1.3E-46 285.6 9.8 141 1-150 49-190 (574)
2 cd01370 KISc_KIP3_like Kinesin 100.0 5.5E-40 1.2E-44 263.5 17.0 139 2-150 52-190 (338)
3 cd01365 KISc_KIF1A_KIF1B Kines 100.0 1E-39 2.2E-44 263.6 18.2 149 2-150 46-195 (356)
4 KOG0245|consensus 100.0 2.5E-41 5.4E-46 290.8 8.2 149 2-150 45-195 (1221)
5 KOG0242|consensus 100.0 4.5E-40 9.8E-45 281.7 13.6 137 3-150 52-188 (675)
6 cd01368 KISc_KIF23_like Kinesi 100.0 3.6E-39 7.9E-44 259.4 17.3 135 2-150 53-191 (345)
7 cd01373 KISc_KLP2_like Kinesin 100.0 4.8E-39 1E-43 258.0 17.3 140 2-150 39-189 (337)
8 cd01367 KISc_KIF2_like Kinesin 100.0 9.8E-39 2.1E-43 254.8 14.9 135 3-150 50-184 (322)
9 cd01376 KISc_KID_like Kinesin 100.0 6.9E-38 1.5E-42 249.6 16.8 137 2-150 45-181 (319)
10 cd01374 KISc_CENP_E Kinesin mo 100.0 1.2E-37 2.7E-42 248.3 17.1 138 2-150 38-175 (321)
11 cd01371 KISc_KIF3 Kinesin moto 100.0 1.4E-37 2.9E-42 249.2 16.4 139 2-150 46-187 (333)
12 KOG0243|consensus 100.0 1E-38 2.3E-43 277.2 10.0 138 3-150 94-245 (1041)
13 KOG0241|consensus 100.0 1.1E-38 2.4E-43 272.7 8.8 150 1-150 50-199 (1714)
14 cd01375 KISc_KIF9_like Kinesin 100.0 4.4E-37 9.5E-42 246.4 16.2 139 2-150 46-191 (334)
15 PF00225 Kinesin: Kinesin moto 100.0 3.6E-37 7.7E-42 246.5 14.8 142 2-150 39-186 (335)
16 cd01369 KISc_KHC_KIF5 Kinesin 100.0 8.4E-37 1.8E-41 243.8 16.3 139 2-150 41-182 (325)
17 PLN03188 kinesin-12 family pro 100.0 3.9E-37 8.4E-42 270.3 15.6 139 3-150 131-283 (1320)
18 cd01366 KISc_C_terminal Kinesi 100.0 1.7E-36 3.7E-41 242.3 18.0 141 2-150 43-184 (329)
19 cd01372 KISc_KIF4 Kinesin moto 100.0 8.4E-37 1.8E-41 245.2 15.8 140 3-150 39-185 (341)
20 cd01364 KISc_BimC_Eg5 Kinesin 100.0 1.3E-36 2.7E-41 245.2 16.5 139 2-150 46-198 (352)
21 cd00106 KISc Kinesin motor dom 100.0 4.1E-36 8.9E-41 239.8 18.0 142 2-150 43-184 (328)
22 smart00129 KISc Kinesin motor, 100.0 2.9E-35 6.3E-40 235.6 17.6 139 2-150 44-182 (335)
23 KOG0240|consensus 100.0 3.3E-36 7.1E-41 247.6 11.9 138 3-150 48-188 (607)
24 KOG0239|consensus 100.0 3.1E-35 6.8E-40 251.4 9.9 137 5-150 361-498 (670)
25 KOG0246|consensus 100.0 1.1E-31 2.4E-36 221.0 12.4 137 4-150 258-400 (676)
26 COG5059 KIP1 Kinesin-like prot 100.0 1.5E-30 3.2E-35 220.6 9.9 138 3-150 55-192 (568)
27 KOG0247|consensus 100.0 7.2E-31 1.6E-35 221.0 7.7 141 3-150 80-287 (809)
28 KOG0244|consensus 99.9 2E-26 4.3E-31 198.4 6.1 138 2-149 30-171 (913)
29 cd01363 Motor_domain Myosin an 99.6 1.7E-14 3.6E-19 107.0 10.2 57 28-85 8-64 (186)
30 PF00308 Bac_DnaA: Bacterial d 96.1 0.0021 4.6E-08 48.8 0.7 50 5-64 4-53 (219)
31 COG0556 UvrB Helicase subunit 95.6 0.03 6.6E-07 47.9 5.7 82 20-107 12-100 (663)
32 PRK06620 hypothetical protein; 94.9 0.017 3.7E-07 43.8 2.1 50 4-64 11-63 (214)
33 PRK06893 DNA replication initi 94.6 0.03 6.5E-07 42.7 2.8 23 42-64 36-58 (229)
34 PRK09087 hypothetical protein; 94.3 0.032 6.8E-07 42.6 2.3 20 45-64 44-63 (226)
35 PRK14086 dnaA chromosomal repl 93.5 0.04 8.7E-07 48.0 1.7 39 24-64 295-333 (617)
36 COG1474 CDC6 Cdc6-related prot 93.5 0.24 5.3E-06 40.6 6.2 37 26-62 23-59 (366)
37 COG2805 PilT Tfp pilus assembl 93.1 0.05 1.1E-06 43.6 1.6 30 33-62 113-142 (353)
38 PRK08084 DNA replication initi 93.1 0.081 1.8E-06 40.5 2.6 19 46-64 46-64 (235)
39 PRK12377 putative replication 92.9 0.14 3.1E-06 39.7 3.7 40 23-64 81-120 (248)
40 PRK08181 transposase; Validate 92.7 0.087 1.9E-06 41.4 2.4 18 47-64 108-125 (269)
41 TIGR02928 orc1/cdc6 family rep 92.7 0.1 2.2E-06 42.1 2.8 39 23-62 18-57 (365)
42 PRK00411 cdc6 cell division co 92.7 0.12 2.5E-06 42.2 3.2 39 23-62 33-72 (394)
43 PRK06526 transposase; Provisio 92.7 0.057 1.2E-06 42.0 1.3 49 11-64 69-117 (254)
44 PRK05642 DNA replication initi 92.4 0.089 1.9E-06 40.2 2.1 19 46-64 46-64 (234)
45 TIGR00362 DnaA chromosomal rep 92.4 0.1 2.2E-06 43.0 2.5 40 23-64 116-155 (405)
46 PRK08116 hypothetical protein; 92.3 0.12 2.6E-06 40.4 2.8 42 22-64 90-133 (268)
47 cd00009 AAA The AAA+ (ATPases 92.3 0.12 2.6E-06 34.8 2.5 25 38-62 12-36 (151)
48 COG0593 DnaA ATPase involved i 92.1 0.11 2.3E-06 43.3 2.3 66 5-80 83-155 (408)
49 PRK00149 dnaA chromosomal repl 92.1 0.1 2.2E-06 43.7 2.2 39 24-64 129-167 (450)
50 PRK14088 dnaA chromosomal repl 91.6 0.13 2.8E-06 43.2 2.3 38 23-64 111-149 (440)
51 PRK07952 DNA replication prote 91.3 0.21 4.5E-06 38.7 3.1 39 24-64 80-118 (244)
52 PF13245 AAA_19: Part of AAA d 91.2 0.11 2.4E-06 32.8 1.2 24 38-62 4-27 (76)
53 PRK06835 DNA replication prote 90.9 0.3 6.6E-06 39.5 3.7 30 34-64 173-202 (329)
54 PRK08903 DnaA regulatory inact 90.2 0.24 5.2E-06 37.3 2.5 20 44-63 41-60 (227)
55 COG2804 PulE Type II secretory 90.1 0.19 4.1E-06 42.7 2.0 30 35-64 248-277 (500)
56 PF04851 ResIII: Type III rest 90.0 0.24 5.3E-06 35.1 2.3 31 34-64 13-44 (184)
57 PF05673 DUF815: Protein of un 89.9 0.44 9.4E-06 37.1 3.7 26 38-63 44-70 (249)
58 PF05970 PIF1: PIF1-like helic 89.3 0.28 6.1E-06 40.0 2.4 37 22-62 3-39 (364)
59 KOG0989|consensus 89.3 0.34 7.3E-06 39.0 2.7 37 26-62 37-74 (346)
60 PRK06921 hypothetical protein; 89.3 0.3 6.5E-06 38.2 2.4 31 34-64 103-136 (266)
61 PRK14087 dnaA chromosomal repl 89.2 0.27 5.7E-06 41.4 2.2 40 23-64 121-160 (450)
62 PRK12422 chromosomal replicati 89.1 0.36 7.9E-06 40.6 2.9 39 23-63 117-159 (445)
63 COG1484 DnaC DNA replication p 89.1 0.41 8.8E-06 37.2 3.0 40 22-64 85-124 (254)
64 TIGR03420 DnaA_homol_Hda DnaA 89.0 0.36 7.7E-06 36.0 2.6 22 42-63 35-56 (226)
65 PRK08939 primosomal protein Dn 88.8 0.26 5.6E-06 39.4 1.7 40 24-64 135-175 (306)
66 PF01695 IstB_IS21: IstB-like 88.6 0.35 7.5E-06 35.5 2.2 20 44-63 46-65 (178)
67 PRK08727 hypothetical protein; 88.1 0.4 8.7E-06 36.6 2.4 19 46-64 42-60 (233)
68 PF01637 Arch_ATPase: Archaeal 87.5 0.29 6.3E-06 36.1 1.3 29 35-63 10-38 (234)
69 TIGR03015 pepcterm_ATPase puta 87.4 0.6 1.3E-05 35.8 3.0 47 17-63 11-61 (269)
70 PF13401 AAA_22: AAA domain; P 87.1 0.19 4E-06 34.1 0.0 18 45-62 4-21 (131)
71 smart00382 AAA ATPases associa 86.6 0.26 5.5E-06 32.7 0.5 18 46-63 3-20 (148)
72 PF00437 T2SE: Type II/IV secr 86.3 0.38 8.2E-06 37.2 1.3 18 45-62 127-144 (270)
73 PF00004 AAA: ATPase family as 86.2 0.25 5.4E-06 33.2 0.3 39 48-86 1-56 (132)
74 PF13604 AAA_30: AAA domain; P 85.9 0.46 1E-05 35.3 1.6 27 36-62 9-35 (196)
75 PRK10436 hypothetical protein; 85.8 0.43 9.4E-06 40.4 1.5 28 36-63 209-236 (462)
76 TIGR01420 pilT_fam pilus retra 85.7 0.46 1E-05 38.4 1.6 28 35-62 112-139 (343)
77 TIGR02533 type_II_gspE general 85.7 0.47 1E-05 40.4 1.7 28 36-63 233-260 (486)
78 PHA00729 NTP-binding motif con 85.7 0.77 1.7E-05 35.2 2.7 30 34-63 6-35 (226)
79 PRK12402 replication factor C 85.7 0.69 1.5E-05 36.6 2.6 21 42-62 33-53 (337)
80 PRK09183 transposase/IS protei 85.7 0.37 8E-06 37.5 1.0 18 47-64 104-121 (259)
81 TIGR02538 type_IV_pilB type IV 85.6 0.44 9.4E-06 41.3 1.5 27 36-62 307-333 (564)
82 PF13191 AAA_16: AAA ATPase do 85.4 0.2 4.4E-06 35.9 -0.5 22 41-62 20-41 (185)
83 cd00046 DEXDc DEAD-like helica 85.4 0.32 6.9E-06 32.3 0.5 17 48-64 3-19 (144)
84 PF13086 AAA_11: AAA domain; P 85.2 0.37 8E-06 35.5 0.8 25 37-62 10-34 (236)
85 PF07693 KAP_NTPase: KAP famil 84.9 0.75 1.6E-05 36.2 2.5 32 31-62 6-37 (325)
86 PF01935 DUF87: Domain of unkn 84.8 0.34 7.3E-06 36.5 0.4 15 48-62 26-40 (229)
87 KOG1514|consensus 84.2 2.8 6E-05 37.4 5.7 29 35-63 410-440 (767)
88 TIGR02524 dot_icm_DotB Dot/Icm 83.9 0.63 1.4E-05 38.0 1.7 24 39-62 128-151 (358)
89 COG5008 PilU Tfp pilus assembl 83.9 0.79 1.7E-05 36.5 2.1 29 34-62 116-144 (375)
90 PF12846 AAA_10: AAA-like doma 83.8 0.39 8.5E-06 36.9 0.4 18 45-62 1-18 (304)
91 cd01129 PulE-GspE PulE/GspE Th 83.7 0.64 1.4E-05 36.3 1.6 27 36-62 71-97 (264)
92 TIGR02525 plasmid_TraJ plasmid 83.7 0.69 1.5E-05 38.1 1.8 27 35-62 140-166 (372)
93 PF13479 AAA_24: AAA domain 83.2 0.55 1.2E-05 35.3 1.0 20 45-64 3-22 (213)
94 cd01131 PilT Pilus retraction 82.8 0.49 1.1E-05 35.2 0.5 17 46-62 2-18 (198)
95 PF06309 Torsin: Torsin; Inte 82.6 3.4 7.3E-05 28.9 4.6 25 47-81 54-79 (127)
96 PF00270 DEAD: DEAD/DEAH box h 82.4 1.2 2.5E-05 31.3 2.4 27 36-64 7-33 (169)
97 PF00580 UvrD-helicase: UvrD/R 81.7 0.62 1.3E-05 36.1 0.8 20 44-63 12-31 (315)
98 PF05496 RuvB_N: Holliday junc 81.5 3.3 7.2E-05 31.9 4.6 43 19-62 23-67 (233)
99 TIGR00631 uvrb excinuclease AB 81.4 3.2 6.9E-05 36.8 5.1 84 18-107 7-97 (655)
100 PF00063 Myosin_head: Myosin h 81.4 1.2 2.6E-05 39.4 2.6 21 42-62 82-102 (689)
101 TIGR00635 ruvB Holliday juncti 81.0 1.1 2.5E-05 35.1 2.1 43 20-63 4-48 (305)
102 PLN00020 ribulose bisphosphate 80.8 1.6 3.5E-05 36.2 2.9 62 24-85 123-205 (413)
103 PLN03025 replication factor C 80.7 1.5 3.2E-05 35.0 2.6 22 42-63 31-52 (319)
104 PF13671 AAA_33: AAA domain; P 80.5 0.76 1.6E-05 31.5 0.8 15 48-62 2-16 (143)
105 PF00910 RNA_helicase: RNA hel 80.4 0.49 1.1E-05 31.6 -0.2 26 48-83 1-26 (107)
106 COG4962 CpaF Flp pilus assembl 80.3 1.1 2.3E-05 36.6 1.7 17 46-62 174-190 (355)
107 PF13207 AAA_17: AAA domain; P 80.2 0.63 1.4E-05 31.1 0.3 16 47-62 1-16 (121)
108 COG4096 HsdR Type I site-speci 80.0 2.3 5E-05 38.4 3.8 37 26-63 166-203 (875)
109 TIGR02782 TrbB_P P-type conjug 79.4 1 2.3E-05 35.8 1.4 28 34-62 122-149 (299)
110 smart00242 MYSc Myosin. Large 79.3 2.2 4.8E-05 37.8 3.5 21 42-62 89-109 (677)
111 PF07728 AAA_5: AAA domain (dy 79.3 0.66 1.4E-05 32.0 0.2 15 48-62 2-16 (139)
112 PTZ00112 origin recognition co 79.2 2 4.3E-05 39.6 3.2 36 26-62 761-798 (1164)
113 COG1223 Predicted ATPase (AAA+ 79.2 0.8 1.7E-05 36.4 0.6 41 45-85 151-208 (368)
114 PRK00440 rfc replication facto 78.6 1.8 4E-05 33.8 2.5 21 42-62 35-55 (319)
115 PF07724 AAA_2: AAA domain (Cd 78.5 0.86 1.9E-05 33.2 0.6 17 46-62 4-20 (171)
116 cd01384 MYSc_type_XI Myosin mo 78.2 2.6 5.7E-05 37.4 3.6 21 42-62 85-105 (674)
117 cd01377 MYSc_type_II Myosin mo 78.1 2.5 5.4E-05 37.7 3.4 21 42-62 88-108 (693)
118 cd01383 MYSc_type_VIII Myosin 78.1 2.8 6.2E-05 37.2 3.8 21 42-62 89-109 (677)
119 cd00124 MYSc Myosin motor doma 77.8 2.6 5.6E-05 37.4 3.5 25 38-62 78-103 (679)
120 PRK13894 conjugal transfer ATP 77.5 1.6 3.5E-05 35.1 2.0 27 35-62 139-165 (319)
121 cd01381 MYSc_type_VII Myosin m 77.2 3 6.5E-05 37.0 3.7 21 42-62 83-103 (671)
122 cd01130 VirB11-like_ATPase Typ 77.2 1.7 3.7E-05 31.8 1.9 28 34-62 15-42 (186)
123 PRK06547 hypothetical protein; 77.0 2.8 6.2E-05 30.5 3.0 26 37-62 7-32 (172)
124 cd01378 MYSc_type_I Myosin mot 77.0 3 6.6E-05 37.0 3.7 21 42-62 83-103 (674)
125 cd01382 MYSc_type_VI Myosin mo 76.9 2.7 5.9E-05 37.6 3.4 21 42-62 88-108 (717)
126 TIGR02881 spore_V_K stage V sp 76.5 1.2 2.6E-05 34.4 1.0 18 45-62 42-59 (261)
127 PHA02544 44 clamp loader, smal 76.3 2.2 4.7E-05 33.7 2.4 21 42-62 39-60 (316)
128 cd01385 MYSc_type_IX Myosin mo 76.2 3.1 6.7E-05 37.1 3.5 21 42-62 91-111 (692)
129 cd01380 MYSc_type_V Myosin mot 76.2 3 6.6E-05 37.1 3.5 21 42-62 83-103 (691)
130 PRK13342 recombination factor 76.0 1.5 3.2E-05 36.4 1.4 39 24-63 16-54 (413)
131 cd01387 MYSc_type_XV Myosin mo 75.6 3.6 7.8E-05 36.6 3.7 21 42-62 84-104 (677)
132 PF06414 Zeta_toxin: Zeta toxi 75.1 1.6 3.4E-05 32.3 1.2 20 43-62 13-32 (199)
133 COG1201 Lhr Lhr-like helicases 75.0 5.6 0.00012 36.1 4.8 25 36-62 30-54 (814)
134 PF02562 PhoH: PhoH-like prote 75.0 2.3 5E-05 32.1 2.1 19 44-62 18-36 (205)
135 PF01580 FtsK_SpoIIIE: FtsK/Sp 74.8 0.99 2.1E-05 33.4 0.1 17 46-62 39-55 (205)
136 PF00448 SRP54: SRP54-type pro 74.8 1.1 2.4E-05 33.4 0.3 16 47-62 3-18 (196)
137 PF02456 Adeno_IVa2: Adenoviru 74.7 1.1 2.4E-05 36.2 0.3 17 47-63 89-105 (369)
138 PF03668 ATP_bind_2: P-loop AT 74.7 5 0.00011 31.9 3.9 16 47-62 3-18 (284)
139 smart00487 DEXDc DEAD-like hel 74.1 2.3 5.1E-05 29.9 1.9 19 46-64 25-43 (201)
140 PRK13833 conjugal transfer pro 74.1 2.2 4.8E-05 34.5 1.9 27 35-62 135-161 (323)
141 PRK13900 type IV secretion sys 74.1 2.4 5.1E-05 34.3 2.1 27 35-62 151-177 (332)
142 cd01120 RecA-like_NTPases RecA 74.0 1.2 2.6E-05 30.7 0.3 15 48-62 2-16 (165)
143 PF03215 Rad17: Rad17 cell cyc 73.8 2.5 5.5E-05 36.3 2.3 29 34-62 32-62 (519)
144 PRK04195 replication factor C 73.7 2.6 5.5E-05 35.7 2.3 29 34-62 27-56 (482)
145 PRK13851 type IV secretion sys 73.7 1.3 2.7E-05 36.1 0.4 27 35-62 153-179 (344)
146 TIGR03499 FlhF flagellar biosy 73.2 4.6 0.0001 31.7 3.5 16 47-62 196-211 (282)
147 KOG0736|consensus 73.1 4.6 0.0001 36.6 3.7 21 68-88 786-806 (953)
148 PF13238 AAA_18: AAA domain; P 73.0 1.7 3.7E-05 28.9 0.9 15 48-62 1-15 (129)
149 TIGR01242 26Sp45 26S proteasom 72.6 1.4 3.1E-05 35.7 0.5 19 45-63 156-174 (364)
150 cd01123 Rad51_DMC1_radA Rad51_ 72.6 2.2 4.9E-05 32.0 1.6 28 35-62 6-36 (235)
151 cd01386 MYSc_type_XVIII Myosin 72.4 4.2 9E-05 36.7 3.4 21 42-62 83-103 (767)
152 PRK04328 hypothetical protein; 72.3 3.2 6.9E-05 32.0 2.4 28 35-62 10-40 (249)
153 PRK12723 flagellar biosynthesi 72.2 4.7 0.0001 33.4 3.4 18 45-62 174-191 (388)
154 PF12775 AAA_7: P-loop contain 71.4 2.5 5.4E-05 33.2 1.6 27 36-63 25-51 (272)
155 TIGR02903 spore_lon_C ATP-depe 71.0 2.9 6.3E-05 36.7 2.1 27 36-62 166-192 (615)
156 COG1222 RPT1 ATP-dependent 26S 71.0 2 4.2E-05 35.5 0.9 61 26-86 161-243 (406)
157 PF13555 AAA_29: P-loop contai 70.6 1.7 3.7E-05 26.4 0.4 16 47-62 25-40 (62)
158 smart00763 AAA_PrkA PrkA AAA d 70.5 6.7 0.00015 32.3 3.9 39 23-62 54-95 (361)
159 PF05729 NACHT: NACHT domain 70.3 2 4.3E-05 29.9 0.7 16 47-62 2-17 (166)
160 PRK13341 recombination factor 70.3 3.1 6.7E-05 37.3 2.1 22 42-63 49-70 (725)
161 PF13476 AAA_23: AAA domain; P 69.6 2 4.2E-05 30.9 0.6 17 46-62 20-36 (202)
162 KOG3859|consensus 69.4 2.6 5.6E-05 33.8 1.3 29 34-62 30-59 (406)
163 PF00158 Sigma54_activat: Sigm 69.3 4.1 8.8E-05 29.6 2.2 21 42-62 19-39 (168)
164 PRK00080 ruvB Holliday junctio 69.1 1.7 3.6E-05 34.8 0.2 39 23-62 28-68 (328)
165 PF00931 NB-ARC: NB-ARC domain 69.1 6.6 0.00014 30.2 3.5 30 33-62 5-36 (287)
166 PRK03992 proteasome-activating 69.0 1.9 4E-05 35.6 0.4 40 45-84 165-221 (389)
167 TIGR02639 ClpA ATP-dependent C 69.0 3.4 7.5E-05 36.9 2.1 23 42-64 200-222 (731)
168 PHA02244 ATPase-like protein 68.9 5.1 0.00011 33.2 2.9 19 42-62 118-136 (383)
169 TIGR01618 phage_P_loop phage n 68.8 2 4.3E-05 32.8 0.5 20 45-64 12-31 (220)
170 PRK09270 nucleoside triphospha 68.7 5.8 0.00013 29.9 3.1 37 26-62 13-50 (229)
171 KOG2543|consensus 68.7 2.2 4.8E-05 35.4 0.8 19 45-63 30-48 (438)
172 COG2607 Predicted ATPase (AAA+ 68.3 6.3 0.00014 30.9 3.2 25 38-62 77-102 (287)
173 TIGR02640 gas_vesic_GvpN gas v 68.1 4.9 0.00011 31.1 2.6 27 34-62 12-38 (262)
174 KOG1803|consensus 68.0 2.8 6.1E-05 36.6 1.3 17 46-62 202-218 (649)
175 PRK11776 ATP-dependent RNA hel 67.9 4.5 9.7E-05 33.8 2.5 24 36-61 34-57 (460)
176 PF10923 DUF2791: P-loop Domai 67.4 5.5 0.00012 33.4 2.9 29 34-62 38-66 (416)
177 PRK13764 ATPase; Provisional 67.4 3 6.6E-05 36.5 1.4 19 44-62 256-274 (602)
178 PRK14722 flhF flagellar biosyn 67.1 2.4 5.1E-05 35.0 0.7 18 45-62 137-154 (374)
179 PTZ00014 myosin-A; Provisional 67.1 6.6 0.00014 35.8 3.5 21 42-62 180-200 (821)
180 PRK11331 5-methylcytosine-spec 67.1 5.2 0.00011 33.9 2.7 27 34-62 185-211 (459)
181 KOG0651|consensus 66.9 2.7 5.8E-05 34.2 0.9 78 2-87 125-225 (388)
182 COG1219 ClpX ATP-dependent pro 66.7 2.7 5.9E-05 34.3 0.9 17 46-62 98-114 (408)
183 PF10236 DAP3: Mitochondrial r 66.5 4.6 0.0001 32.3 2.2 23 41-63 19-41 (309)
184 COG0606 Predicted ATPase with 66.4 2 4.3E-05 36.6 0.1 24 48-74 201-224 (490)
185 PRK15455 PrkA family serine pr 66.3 9.6 0.00021 33.6 4.2 39 23-61 79-119 (644)
186 TIGR01241 FtsH_fam ATP-depende 66.0 2.2 4.8E-05 36.2 0.3 18 46-63 89-106 (495)
187 TIGR02237 recomb_radB DNA repa 65.6 4.1 8.8E-05 30.0 1.7 18 45-62 12-29 (209)
188 PF06048 DUF927: Domain of unk 65.3 6.7 0.00014 30.9 2.9 30 32-62 181-210 (286)
189 cd00268 DEADc DEAD-box helicas 65.3 6.1 0.00013 28.7 2.5 25 36-62 29-53 (203)
190 PF00735 Septin: Septin; Inte 65.3 2.7 5.8E-05 33.2 0.6 20 43-62 2-21 (281)
191 PTZ00454 26S protease regulato 65.1 2.5 5.5E-05 35.1 0.5 40 45-84 179-235 (398)
192 PTZ00424 helicase 45; Provisio 64.8 5.3 0.00012 32.4 2.3 26 35-62 57-82 (401)
193 PF08477 Miro: Miro-like prote 64.7 2.4 5.2E-05 27.9 0.3 15 48-62 2-16 (119)
194 COG2256 MGS1 ATPase related to 64.4 3.9 8.4E-05 34.2 1.4 39 23-62 27-65 (436)
195 PRK11192 ATP-dependent RNA hel 64.3 5.6 0.00012 32.9 2.4 24 36-61 31-54 (434)
196 PF14532 Sigma54_activ_2: Sigm 64.2 7 0.00015 26.9 2.6 20 43-62 19-38 (138)
197 cd01124 KaiC KaiC is a circadi 64.1 3.4 7.3E-05 29.6 1.0 15 48-62 2-16 (187)
198 PRK06696 uridine kinase; Valid 64.1 9.8 0.00021 28.6 3.5 21 42-62 19-39 (223)
199 cd02021 GntK Gluconate kinase 64.0 2.8 6E-05 29.2 0.5 15 48-62 2-16 (150)
200 PRK07261 topology modulation p 63.9 3.6 7.8E-05 29.7 1.1 15 48-62 3-17 (171)
201 PRK10536 hypothetical protein; 63.8 3.2 7E-05 32.6 0.8 17 46-62 75-91 (262)
202 PRK14962 DNA polymerase III su 63.6 4.9 0.00011 34.2 1.9 23 40-62 30-53 (472)
203 KOG0953|consensus 63.5 6.5 0.00014 34.3 2.6 40 47-86 193-238 (700)
204 cd01379 MYSc_type_III Myosin m 63.5 7.8 0.00017 34.4 3.2 21 42-62 83-103 (653)
205 cd01127 TrwB Bacterial conjuga 63.2 2.8 6.1E-05 34.7 0.4 18 45-62 42-59 (410)
206 PTZ00361 26 proteosome regulat 63.0 2.7 5.8E-05 35.4 0.3 17 46-62 218-234 (438)
207 PRK10590 ATP-dependent RNA hel 62.9 6.6 0.00014 32.9 2.6 25 36-62 31-55 (456)
208 PRK00131 aroK shikimate kinase 62.7 3.8 8.3E-05 28.8 1.0 17 46-62 5-21 (175)
209 KOG0926|consensus 62.7 5.6 0.00012 36.3 2.1 19 44-62 270-288 (1172)
210 PF00025 Arf: ADP-ribosylation 62.4 4.9 0.00011 29.0 1.5 28 35-62 3-31 (175)
211 PRK10917 ATP-dependent DNA hel 62.1 9.8 0.00021 33.8 3.6 27 36-62 273-299 (681)
212 cd00464 SK Shikimate kinase (S 62.1 3.6 7.7E-05 28.5 0.7 16 47-62 1-16 (154)
213 TIGR02880 cbbX_cfxQ probable R 62.0 3.1 6.7E-05 32.8 0.4 16 47-62 60-75 (284)
214 COG1419 FlhF Flagellar GTP-bin 61.9 7.6 0.00016 32.4 2.7 37 26-62 180-220 (407)
215 TIGR00376 DNA helicase, putati 61.9 2.9 6.3E-05 36.8 0.3 17 47-63 175-191 (637)
216 TIGR01359 UMP_CMP_kin_fam UMP- 61.9 4.1 9E-05 29.2 1.1 15 48-62 2-16 (183)
217 TIGR00643 recG ATP-dependent D 61.8 8 0.00017 33.9 3.0 27 36-62 247-273 (630)
218 PRK09361 radB DNA repair and r 61.7 8.1 0.00018 28.8 2.7 28 35-62 10-40 (225)
219 COG1126 GlnQ ABC-type polar am 61.6 3.2 7E-05 31.9 0.5 15 48-62 31-45 (240)
220 PRK08118 topology modulation p 61.6 4.2 9.1E-05 29.3 1.1 15 48-62 4-18 (167)
221 PRK04837 ATP-dependent RNA hel 61.6 6.5 0.00014 32.5 2.3 25 36-62 38-62 (423)
222 COG3829 RocR Transcriptional r 61.5 6.1 0.00013 34.2 2.1 19 41-59 264-282 (560)
223 PRK10416 signal recognition pa 61.2 12 0.00026 30.1 3.7 18 45-62 114-131 (318)
224 TIGR02788 VirB11 P-type DNA tr 61.1 7.4 0.00016 31.0 2.5 28 34-62 134-161 (308)
225 PF04548 AIG1: AIG1 family; I 61.1 3.6 7.7E-05 30.8 0.6 16 47-62 2-17 (212)
226 KOG0726|consensus 61.1 4.5 9.6E-05 32.8 1.2 41 47-87 221-278 (440)
227 PRK14974 cell division protein 61.0 14 0.0003 30.0 4.0 18 45-62 140-157 (336)
228 PHA02653 RNA helicase NPH-II; 60.9 10 0.00023 33.7 3.6 33 23-61 163-195 (675)
229 CHL00081 chlI Mg-protoporyphyr 60.8 6.7 0.00014 32.1 2.2 35 24-62 21-55 (350)
230 PRK14970 DNA polymerase III su 60.7 7.9 0.00017 31.3 2.6 27 36-62 29-56 (367)
231 PHA01747 putative ATP-dependen 60.7 6.4 0.00014 32.7 2.0 31 32-62 177-207 (425)
232 TIGR02322 phosphon_PhnN phosph 60.7 3.4 7.4E-05 29.6 0.5 16 47-62 3-18 (179)
233 TIGR02902 spore_lonB ATP-depen 60.7 9.8 0.00021 32.8 3.3 25 38-62 79-103 (531)
234 PRK11448 hsdR type I restricti 60.5 5.5 0.00012 37.5 1.8 30 34-64 423-452 (1123)
235 cd01393 recA_like RecA is a b 60.5 6.9 0.00015 29.1 2.1 28 35-62 6-36 (226)
236 PRK14961 DNA polymerase III su 60.5 8.2 0.00018 31.4 2.7 35 24-62 20-55 (363)
237 COG1125 OpuBA ABC-type proline 60.4 3.5 7.6E-05 32.7 0.5 14 49-62 31-44 (309)
238 PRK00771 signal recognition pa 60.0 14 0.0003 31.2 4.0 19 45-63 95-113 (437)
239 PHA02624 large T antigen; Prov 60.0 9.5 0.00021 33.7 3.1 28 35-62 419-448 (647)
240 CHL00181 cbbX CbbX; Provisiona 59.8 4 8.7E-05 32.2 0.7 16 47-62 61-76 (287)
241 TIGR03819 heli_sec_ATPase heli 59.7 6.5 0.00014 31.9 2.0 28 34-62 168-195 (340)
242 TIGR00348 hsdR type I site-spe 59.7 8.3 0.00018 34.2 2.7 31 32-63 246-281 (667)
243 PRK06067 flagellar accessory p 59.6 8 0.00017 29.1 2.3 28 35-62 12-42 (234)
244 KOG2228|consensus 59.4 17 0.00038 30.0 4.3 54 34-87 37-107 (408)
245 cd01850 CDC_Septin CDC/Septin. 59.4 4.3 9.3E-05 31.8 0.8 21 42-62 1-21 (276)
246 cd00820 PEPCK_HprK Phosphoenol 59.3 4.1 8.9E-05 27.5 0.6 17 46-62 16-32 (107)
247 PRK10865 protein disaggregatio 59.1 10 0.00023 34.6 3.3 17 46-62 599-615 (857)
248 TIGR03689 pup_AAA proteasome A 58.8 3.5 7.6E-05 35.4 0.3 17 46-62 217-233 (512)
249 CHL00195 ycf46 Ycf46; Provisio 58.8 3.8 8.2E-05 35.0 0.5 40 45-84 259-315 (489)
250 PRK06217 hypothetical protein; 58.3 5 0.00011 29.1 1.0 15 48-62 4-18 (183)
251 TIGR02688 conserved hypothetic 58.3 4.1 8.9E-05 34.4 0.6 20 45-64 209-228 (449)
252 cd01126 TraG_VirD4 The TraG/Tr 58.0 6.3 0.00014 32.1 1.6 16 48-63 2-17 (384)
253 KOG0652|consensus 58.0 5.1 0.00011 32.0 1.0 16 47-62 207-222 (424)
254 PF12774 AAA_6: Hydrolytic ATP 57.9 7.3 0.00016 29.9 1.9 36 48-83 35-81 (231)
255 COG5019 CDC3 Septin family pro 57.7 7 0.00015 32.2 1.8 21 42-62 20-40 (373)
256 PF13173 AAA_14: AAA domain 57.3 4.4 9.5E-05 27.6 0.5 16 47-62 4-19 (128)
257 TIGR03238 dnd_assoc_3 dnd syst 57.1 8.1 0.00018 33.1 2.1 19 46-64 33-51 (504)
258 TIGR01074 rep ATP-dependent DN 56.9 5.1 0.00011 35.2 0.9 20 45-64 14-33 (664)
259 cd01428 ADK Adenylate kinase ( 56.7 5.7 0.00012 28.6 1.1 15 48-62 2-16 (194)
260 PF06745 KaiC: KaiC; InterPro 56.7 6 0.00013 29.6 1.2 26 37-62 8-36 (226)
261 TIGR00231 small_GTP small GTP- 56.7 4.1 8.8E-05 27.3 0.3 16 47-62 3-18 (161)
262 TIGR02397 dnaX_nterm DNA polym 56.6 9.9 0.00021 30.3 2.5 24 39-62 29-53 (355)
263 TIGR02236 recomb_radA DNA repa 56.6 7.5 0.00016 30.7 1.8 28 35-62 82-112 (310)
264 TIGR01313 therm_gnt_kin carboh 56.5 4 8.7E-05 28.8 0.2 14 49-62 2-15 (163)
265 cd01394 radB RadB. The archaea 56.2 12 0.00026 27.7 2.8 27 36-62 7-36 (218)
266 KOG0729|consensus 55.8 6.5 0.00014 31.5 1.3 51 34-84 195-267 (435)
267 KOG0354|consensus 55.6 9.8 0.00021 34.2 2.5 25 35-62 69-93 (746)
268 PF03969 AFG1_ATPase: AFG1-lik 55.6 4.8 0.00011 33.0 0.6 18 45-62 62-79 (362)
269 TIGR01360 aden_kin_iso1 adenyl 55.5 6.3 0.00014 28.2 1.1 16 47-62 5-20 (188)
270 KOG1532|consensus 55.5 11 0.00024 30.3 2.5 19 44-62 18-36 (366)
271 PRK14531 adenylate kinase; Pro 55.3 6.3 0.00014 28.6 1.1 16 47-62 4-19 (183)
272 TIGR03744 traC_PFL_4706 conjug 55.2 4.4 9.5E-05 37.1 0.3 19 44-62 474-492 (893)
273 TIGR03158 cas3_cyano CRISPR-as 54.8 11 0.00025 30.5 2.6 26 37-62 6-31 (357)
274 TIGR00614 recQ_fam ATP-depende 54.6 12 0.00025 31.6 2.7 25 36-62 19-43 (470)
275 PRK11034 clpA ATP-dependent Cl 54.4 6.9 0.00015 35.3 1.4 20 45-64 207-226 (758)
276 PRK14532 adenylate kinase; Pro 54.3 7.4 0.00016 28.2 1.3 16 47-62 2-17 (188)
277 TIGR02746 TraC-F-type type-IV 54.2 4.8 0.0001 36.1 0.4 18 45-62 430-447 (797)
278 cd02019 NK Nucleoside/nucleoti 54.0 7 0.00015 23.7 1.0 15 48-62 2-16 (69)
279 KOG0739|consensus 53.9 6.1 0.00013 32.1 0.9 60 28-87 145-225 (439)
280 TIGR03263 guanyl_kin guanylate 53.8 7.4 0.00016 27.8 1.3 16 47-62 3-18 (180)
281 PF02534 T4SS-DNA_transf: Type 53.8 10 0.00023 31.6 2.3 18 46-63 45-62 (469)
282 PF10412 TrwB_AAD_bind: Type I 53.7 4.3 9.4E-05 33.4 0.0 17 46-62 16-32 (386)
283 TIGR00618 sbcc exonuclease Sbc 53.7 18 0.0004 33.7 4.0 17 46-62 27-43 (1042)
284 cd02020 CMPK Cytidine monophos 53.6 7 0.00015 26.6 1.1 15 48-62 2-16 (147)
285 PRK05703 flhF flagellar biosyn 53.6 5.4 0.00012 33.4 0.6 16 47-62 223-238 (424)
286 PRK06762 hypothetical protein; 53.6 7.3 0.00016 27.5 1.2 15 47-61 4-18 (166)
287 COG1136 SalX ABC-type antimicr 53.2 5 0.00011 30.8 0.3 15 48-62 34-48 (226)
288 TIGR01817 nifA Nif-specific re 53.2 9.1 0.0002 32.8 1.9 20 43-62 217-236 (534)
289 TIGR01243 CDC48 AAA family ATP 53.2 5.7 0.00012 35.5 0.7 17 46-62 213-229 (733)
290 PF01926 MMR_HSR1: 50S ribosom 53.2 4.7 0.0001 26.6 0.1 15 48-62 2-16 (116)
291 PLN00206 DEAD-box ATP-dependen 53.2 13 0.00029 31.7 2.9 24 36-61 151-174 (518)
292 PRK11634 ATP-dependent RNA hel 52.9 11 0.00025 33.1 2.4 25 36-62 36-60 (629)
293 KOG0744|consensus 52.7 5.8 0.00013 32.5 0.6 20 45-64 177-196 (423)
294 KOG0727|consensus 52.6 7 0.00015 31.1 1.0 64 22-85 161-246 (408)
295 TIGR02238 recomb_DMC1 meiotic 52.6 11 0.00024 30.2 2.2 28 35-62 83-113 (313)
296 PRK08233 hypothetical protein; 52.5 7.1 0.00015 27.8 1.0 16 47-62 5-20 (182)
297 cd03240 ABC_Rad50 The catalyti 52.3 5.8 0.00013 29.5 0.5 16 47-62 24-39 (204)
298 TIGR03880 KaiC_arch_3 KaiC dom 52.2 13 0.00028 27.8 2.4 26 37-62 5-33 (224)
299 PRK13531 regulatory ATPase Rav 52.0 12 0.00027 32.1 2.4 18 45-62 39-56 (498)
300 COG3842 PotA ABC-type spermidi 52.0 5.5 0.00012 32.6 0.3 15 48-62 34-48 (352)
301 TIGR00580 mfd transcription-re 51.9 15 0.00033 33.9 3.2 32 31-62 458-489 (926)
302 PRK04040 adenylate kinase; Pro 51.8 6.8 0.00015 28.9 0.8 16 47-62 4-19 (188)
303 PF09439 SRPRB: Signal recogni 51.6 8 0.00017 28.6 1.1 17 46-62 4-20 (181)
304 TIGR03881 KaiC_arch_4 KaiC dom 51.6 14 0.00031 27.5 2.6 27 36-62 8-37 (229)
305 PRK00300 gmk guanylate kinase; 51.5 8.7 0.00019 28.1 1.4 17 46-62 6-22 (205)
306 COG0552 FtsY Signal recognitio 51.5 8.8 0.00019 31.3 1.4 20 43-62 137-156 (340)
307 COG0630 VirB11 Type IV secreto 51.4 5.4 0.00012 32.0 0.2 17 46-62 144-160 (312)
308 PRK04301 radA DNA repair and r 51.4 11 0.00023 30.1 1.9 28 35-62 89-119 (317)
309 PF00005 ABC_tran: ABC transpo 51.2 5.8 0.00013 26.9 0.3 16 47-62 13-28 (137)
310 PRK01297 ATP-dependent RNA hel 51.1 12 0.00026 31.5 2.2 26 35-62 116-141 (475)
311 TIGR03877 thermo_KaiC_1 KaiC d 51.1 9.2 0.0002 29.0 1.5 27 36-62 9-38 (237)
312 PF02367 UPF0079: Uncharacteri 50.7 5.3 0.00012 27.7 0.1 18 46-63 16-33 (123)
313 PF01443 Viral_helicase1: Vira 50.6 4.7 0.0001 30.0 -0.2 15 49-63 2-16 (234)
314 PRK13700 conjugal transfer pro 50.5 7.8 0.00017 34.8 1.1 16 47-62 187-202 (732)
315 PRK14729 miaA tRNA delta(2)-is 50.4 8.6 0.00019 30.8 1.2 16 47-62 6-21 (300)
316 PRK11889 flhF flagellar biosyn 50.3 21 0.00046 30.1 3.5 17 46-62 242-258 (436)
317 cd00071 GMPK Guanosine monopho 50.3 8.2 0.00018 26.8 1.0 15 48-62 2-16 (137)
318 PHA02774 E1; Provisional 50.2 14 0.00031 32.4 2.6 27 36-62 423-451 (613)
319 PRK14527 adenylate kinase; Pro 50.2 9.1 0.0002 27.9 1.3 18 45-62 6-23 (191)
320 PRK11034 clpA ATP-dependent Cl 50.2 19 0.0004 32.6 3.4 17 46-62 489-505 (758)
321 PRK05580 primosome assembly pr 50.2 12 0.00026 33.2 2.2 17 46-62 163-179 (679)
322 cd01876 YihA_EngB The YihA (En 50.1 5.9 0.00013 27.1 0.2 15 48-62 2-16 (170)
323 TIGR03878 thermo_KaiC_2 KaiC d 50.0 9.3 0.0002 29.6 1.3 18 45-62 36-53 (259)
324 PLN03187 meiotic recombination 50.0 11 0.00024 30.7 1.8 29 34-62 112-143 (344)
325 COG0467 RAD55 RecA-superfamily 50.0 9.4 0.0002 29.3 1.4 26 37-62 12-40 (260)
326 PRK04537 ATP-dependent RNA hel 50.0 13 0.00029 32.2 2.4 25 36-62 39-63 (572)
327 KOG0745|consensus 49.8 8.2 0.00018 32.9 1.0 17 46-62 227-243 (564)
328 PRK05342 clpX ATP-dependent pr 49.7 8 0.00017 32.3 1.0 17 46-62 109-125 (412)
329 KOG0742|consensus 49.6 8.4 0.00018 32.7 1.1 14 47-60 386-399 (630)
330 PRK05986 cob(I)alamin adenolsy 49.6 6.9 0.00015 29.3 0.5 20 45-64 22-41 (191)
331 COG3596 Predicted GTPase [Gene 49.6 13 0.00028 29.7 2.0 24 39-62 33-56 (296)
332 PRK09302 circadian clock prote 49.5 14 0.0003 31.5 2.4 28 35-62 18-48 (509)
333 PRK06995 flhF flagellar biosyn 49.5 6.8 0.00015 33.5 0.5 17 46-62 257-273 (484)
334 PRK03839 putative kinase; Prov 49.4 8.4 0.00018 27.7 1.0 15 48-62 3-17 (180)
335 TIGR00382 clpX endopeptidase C 49.4 6.7 0.00014 32.8 0.5 17 46-62 117-133 (413)
336 PRK11057 ATP-dependent DNA hel 49.2 14 0.0003 32.3 2.4 25 35-61 32-56 (607)
337 CHL00095 clpC Clp protease ATP 49.2 11 0.00023 34.3 1.7 20 45-64 200-219 (821)
338 TIGR01351 adk adenylate kinase 49.1 8.9 0.00019 28.4 1.1 15 48-62 2-16 (210)
339 cd02023 UMPK Uridine monophosp 49.1 6.3 0.00014 28.8 0.3 15 48-62 2-16 (198)
340 cd02027 APSK Adenosine 5'-phos 49.0 8.4 0.00018 27.1 0.9 15 48-62 2-16 (149)
341 PF00485 PRK: Phosphoribulokin 49.0 6.6 0.00014 28.7 0.4 15 48-62 2-16 (194)
342 PRK01172 ski2-like helicase; P 48.8 14 0.0003 32.6 2.4 24 37-62 31-54 (674)
343 TIGR02655 circ_KaiC circadian 48.8 14 0.00031 31.3 2.4 28 35-62 8-38 (484)
344 PF13304 AAA_21: AAA domain; P 48.7 5.8 0.00013 28.8 0.0 14 49-62 3-16 (303)
345 PRK10078 ribose 1,5-bisphospho 48.5 9.7 0.00021 27.7 1.2 16 47-62 4-19 (186)
346 CHL00176 ftsH cell division pr 48.5 6.6 0.00014 34.7 0.3 17 46-62 217-233 (638)
347 PRK14530 adenylate kinase; Pro 48.5 8.9 0.00019 28.6 1.0 16 47-62 5-20 (215)
348 KOG0743|consensus 48.4 5.8 0.00013 33.5 -0.0 15 48-62 238-252 (457)
349 TIGR01243 CDC48 AAA family ATP 48.4 7.2 0.00016 34.8 0.5 39 46-84 488-543 (733)
350 KOG2035|consensus 48.4 17 0.00038 29.2 2.6 36 27-62 15-51 (351)
351 cd03274 ABC_SMC4_euk Eukaryoti 48.3 7.6 0.00016 29.1 0.6 16 47-62 27-42 (212)
352 TIGR00763 lon ATP-dependent pr 48.3 19 0.00042 32.5 3.2 17 46-62 348-364 (775)
353 PRK06851 hypothetical protein; 48.3 9.9 0.00021 31.3 1.3 27 36-62 21-47 (367)
354 PF02463 SMC_N: RecF/RecN/SMC 48.2 9.5 0.00021 28.3 1.1 16 47-62 26-41 (220)
355 TIGR00235 udk uridine kinase. 48.2 7.2 0.00016 28.9 0.4 16 47-62 8-23 (207)
356 PRK10865 protein disaggregatio 48.1 12 0.00026 34.3 1.9 31 34-64 188-218 (857)
357 PRK00454 engB GTP-binding prot 48.0 13 0.00028 26.7 1.7 28 35-62 14-41 (196)
358 COG0563 Adk Adenylate kinase a 48.0 9.9 0.00022 27.9 1.2 15 48-62 3-17 (178)
359 COG3839 MalK ABC-type sugar tr 48.0 6.9 0.00015 31.9 0.3 15 48-62 32-46 (338)
360 KOG0738|consensus 47.7 18 0.0004 30.4 2.7 57 31-87 227-304 (491)
361 KOG0741|consensus 47.6 10 0.00023 33.1 1.4 16 47-62 258-273 (744)
362 KOG1547|consensus 47.6 25 0.00055 27.8 3.3 33 30-62 30-63 (336)
363 PRK10246 exonuclease subunit S 47.6 23 0.0005 33.2 3.7 18 45-62 30-47 (1047)
364 PRK11664 ATP-dependent RNA hel 47.5 21 0.00046 32.5 3.3 27 34-62 11-37 (812)
365 PRK12724 flagellar biosynthesi 47.5 24 0.00053 29.7 3.5 17 46-62 224-240 (432)
366 cd02025 PanK Pantothenate kina 47.5 5 0.00011 30.4 -0.5 13 50-62 4-16 (220)
367 TIGR01389 recQ ATP-dependent D 47.4 17 0.00036 31.6 2.6 26 35-62 20-45 (591)
368 PRK09825 idnK D-gluconate kina 47.3 7.6 0.00016 28.3 0.4 16 47-62 5-20 (176)
369 TIGR03345 VI_ClpV1 type VI sec 47.3 24 0.00052 32.3 3.7 37 24-61 570-612 (852)
370 cd03279 ABC_sbcCD SbcCD and ot 47.2 8.2 0.00018 28.7 0.6 17 46-62 29-45 (213)
371 TIGR03346 chaperone_ClpB ATP-d 47.0 12 0.00027 34.1 1.8 32 33-64 182-213 (852)
372 PRK00279 adk adenylate kinase; 46.9 10 0.00022 28.2 1.1 15 48-62 3-17 (215)
373 cd01853 Toc34_like Toc34-like 46.7 8.8 0.00019 29.7 0.7 20 43-62 29-48 (249)
374 TIGR02639 ClpA ATP-dependent C 46.6 22 0.00047 31.9 3.3 17 46-62 485-501 (731)
375 KOG0340|consensus 46.6 13 0.00029 30.7 1.8 28 35-64 36-63 (442)
376 cd03238 ABC_UvrA The excision 46.5 7.4 0.00016 28.4 0.3 16 47-62 23-38 (176)
377 PRK05480 uridine/cytidine kina 46.4 9.7 0.00021 28.1 0.9 18 45-62 6-23 (209)
378 smart00175 RAB Rab subfamily o 46.4 7.4 0.00016 26.8 0.3 15 48-62 3-17 (164)
379 TIGR02173 cyt_kin_arch cytidyl 46.1 10 0.00022 26.6 1.0 16 47-62 2-17 (171)
380 KOG0735|consensus 46.0 9.5 0.00021 34.5 0.9 42 43-84 699-757 (952)
381 cd00227 CPT Chloramphenicol (C 45.9 11 0.00024 27.0 1.2 16 47-62 4-19 (175)
382 cd04163 Era Era subfamily. Er 45.9 8.6 0.00019 26.1 0.5 16 47-62 5-20 (168)
383 COG4525 TauB ABC-type taurine 45.6 8.9 0.00019 29.4 0.6 16 47-62 33-48 (259)
384 COG1198 PriA Primosomal protei 45.6 25 0.00054 31.7 3.4 41 43-83 215-269 (730)
385 PF03193 DUF258: Protein of un 45.6 12 0.00026 27.1 1.3 23 38-62 30-52 (161)
386 TIGR01075 uvrD DNA helicase II 45.5 10 0.00022 33.8 1.0 20 45-64 17-36 (715)
387 PRK13767 ATP-dependent helicas 45.4 17 0.00037 33.3 2.5 24 37-62 41-64 (876)
388 PRK14738 gmk guanylate kinase; 45.3 10 0.00022 28.2 0.9 19 44-62 12-30 (206)
389 cd04159 Arl10_like Arl10-like 45.3 8.1 0.00018 26.1 0.3 15 48-62 2-16 (159)
390 TIGR00929 VirB4_CagE type IV s 45.2 8.4 0.00018 34.4 0.5 18 45-62 434-451 (785)
391 PRK11773 uvrD DNA-dependent he 45.2 10 0.00022 33.9 1.0 20 45-64 22-41 (721)
392 PRK02496 adk adenylate kinase; 45.2 11 0.00024 27.1 1.1 15 48-62 4-18 (184)
393 TIGR00064 ftsY signal recognit 44.9 11 0.00023 29.6 0.9 17 46-62 73-89 (272)
394 cd04114 Rab30 Rab30 subfamily. 44.8 9.9 0.00021 26.4 0.7 19 44-62 6-24 (169)
395 COG3854 SpoIIIAA ncharacterize 44.8 16 0.00035 28.7 1.9 35 27-62 120-154 (308)
396 TIGR01073 pcrA ATP-dependent D 44.7 10 0.00023 33.8 1.0 21 44-64 16-36 (726)
397 smart00173 RAS Ras subfamily o 44.5 8.3 0.00018 26.7 0.3 15 48-62 3-17 (164)
398 PRK05541 adenylylsulfate kinas 44.4 12 0.00026 26.7 1.2 17 46-62 8-24 (176)
399 PRK13721 conjugal transfer ATP 44.4 8.6 0.00019 35.0 0.4 18 45-62 449-466 (844)
400 PTZ00110 helicase; Provisional 44.2 17 0.00037 31.4 2.2 24 37-62 161-184 (545)
401 COG0324 MiaA tRNA delta(2)-iso 44.2 13 0.00027 30.0 1.3 16 47-62 5-20 (308)
402 PHA02530 pseT polynucleotide k 44.1 12 0.00026 29.2 1.2 16 47-62 4-19 (300)
403 PRK08533 flagellar accessory p 44.0 13 0.00029 28.2 1.4 18 45-62 24-41 (230)
404 TIGR00602 rad24 checkpoint pro 43.9 18 0.00039 32.1 2.3 16 47-62 112-127 (637)
405 PRK14721 flhF flagellar biosyn 43.6 8.9 0.00019 32.2 0.4 18 45-62 191-208 (420)
406 PRK10867 signal recognition pa 43.6 34 0.00074 28.8 3.8 18 45-62 100-117 (433)
407 KOG0336|consensus 43.4 17 0.00037 30.8 1.9 20 40-61 254-273 (629)
408 COG0464 SpoVK ATPases of the A 43.4 9.2 0.0002 32.3 0.4 42 43-84 274-332 (494)
409 PRK12726 flagellar biosynthesi 43.4 9.9 0.00022 31.7 0.6 18 46-63 207-224 (407)
410 PRK05416 glmZ(sRNA)-inactivati 43.4 28 0.00061 27.6 3.2 17 47-63 8-24 (288)
411 PRK06645 DNA polymerase III su 43.2 24 0.00051 30.4 2.8 23 40-62 37-60 (507)
412 PRK11545 gntK gluconate kinase 43.2 6.1 0.00013 28.3 -0.6 13 51-63 1-13 (163)
413 cd04155 Arl3 Arl3 subfamily. 43.1 9.2 0.0002 26.8 0.3 19 44-62 13-31 (173)
414 PRK05800 cobU adenosylcobinami 43.0 12 0.00027 27.1 1.0 16 47-62 3-18 (170)
415 PRK10820 DNA-binding transcrip 43.0 16 0.00034 31.4 1.8 20 43-62 225-244 (520)
416 TIGR00678 holB DNA polymerase 42.9 19 0.00042 26.0 2.0 24 39-62 7-31 (188)
417 PRK05057 aroK shikimate kinase 42.8 14 0.0003 26.7 1.2 17 46-62 5-21 (172)
418 PLN02200 adenylate kinase fami 42.8 14 0.0003 28.3 1.3 19 44-62 42-60 (234)
419 TIGR00554 panK_bact pantothena 42.8 22 0.00048 28.3 2.5 17 46-62 63-79 (290)
420 cd00876 Ras Ras family. The R 42.8 12 0.00027 25.4 1.0 15 48-62 2-16 (160)
421 cd04156 ARLTS1 ARLTS1 subfamil 42.7 9.4 0.0002 26.3 0.3 15 48-62 2-16 (160)
422 TIGR03817 DECH_helic helicase/ 42.7 20 0.00044 32.2 2.4 26 35-62 43-68 (742)
423 cd03278 ABC_SMC_barmotin Barmo 42.7 9.4 0.0002 28.2 0.3 16 47-62 24-39 (197)
424 PRK14964 DNA polymerase III su 42.5 24 0.00053 30.2 2.8 23 40-62 29-52 (491)
425 cd04164 trmE TrmE (MnmE, ThdF, 42.5 9.6 0.00021 25.8 0.3 16 47-62 3-18 (157)
426 COG1122 CbiO ABC-type cobalt t 42.5 14 0.00029 28.5 1.2 18 45-62 30-47 (235)
427 TIGR03574 selen_PSTK L-seryl-t 42.5 12 0.00026 28.5 0.9 15 48-62 2-16 (249)
428 PF13337 Lon_2: Putative ATP-d 42.4 26 0.00056 29.8 2.9 32 26-62 194-225 (457)
429 cd00544 CobU Adenosylcobinamid 42.4 13 0.00028 27.0 1.1 15 48-62 2-16 (169)
430 PRK13889 conjugal transfer rel 42.4 16 0.00034 34.1 1.8 27 36-63 354-380 (988)
431 KOG3347|consensus 42.4 13 0.00027 27.2 0.9 17 46-62 8-24 (176)
432 KOG0922|consensus 42.4 16 0.00035 32.4 1.7 19 44-62 65-83 (674)
433 TIGR02329 propionate_PrpR prop 42.3 18 0.00039 31.2 2.0 21 42-62 232-252 (526)
434 cd03071 PDI_b'_NRX PDIb' famil 42.2 7.1 0.00015 26.6 -0.3 74 70-147 35-111 (116)
435 PRK00091 miaA tRNA delta(2)-is 42.2 14 0.0003 29.6 1.2 16 47-62 6-21 (307)
436 PRK15429 formate hydrogenlyase 42.2 18 0.00039 32.1 2.0 21 42-62 396-416 (686)
437 cd03272 ABC_SMC3_euk Eukaryoti 42.1 10 0.00022 28.6 0.4 16 47-62 25-40 (243)
438 TIGR02768 TraA_Ti Ti-type conj 42.0 16 0.00036 32.8 1.8 27 37-64 361-387 (744)
439 TIGR01425 SRP54_euk signal rec 42.0 40 0.00087 28.4 4.0 18 45-62 100-117 (429)
440 PF01745 IPT: Isopentenyl tran 42.0 14 0.0003 28.5 1.1 15 48-62 4-18 (233)
441 KOG0924|consensus 42.0 15 0.00033 33.1 1.5 20 43-62 369-388 (1042)
442 PRK13949 shikimate kinase; Pro 41.9 14 0.0003 26.7 1.1 16 47-62 3-18 (169)
443 cd04139 RalA_RalB RalA/RalB su 41.9 13 0.00028 25.4 1.0 15 48-62 3-17 (164)
444 PRK14528 adenylate kinase; Pro 41.9 14 0.0003 27.0 1.1 16 47-62 3-18 (186)
445 cd01860 Rab5_related Rab5-rela 41.8 16 0.00034 25.1 1.4 16 47-62 3-18 (163)
446 COG5022 Myosin heavy chain [Cy 41.7 17 0.00037 35.0 1.9 21 42-62 149-169 (1463)
447 KOG0987|consensus 41.7 29 0.00064 30.0 3.2 35 23-62 120-154 (540)
448 PF13166 AAA_13: AAA domain 41.7 12 0.00025 33.1 0.8 16 47-62 18-33 (712)
449 TIGR01447 recD exodeoxyribonuc 41.7 10 0.00022 33.2 0.4 17 46-62 161-177 (586)
450 TIGR02030 BchI-ChlI magnesium 41.7 21 0.00046 29.0 2.3 37 23-63 7-43 (337)
451 TIGR00150 HI0065_YjeE ATPase, 41.6 9.2 0.0002 26.8 0.1 19 46-64 23-41 (133)
452 cd00154 Rab Rab family. Rab G 41.6 9.7 0.00021 25.6 0.3 16 47-62 2-17 (159)
453 COG1660 Predicted P-loop-conta 41.5 1.5E+02 0.0033 23.6 6.8 37 25-62 218-258 (286)
454 PTZ00035 Rad51 protein; Provis 41.4 21 0.00045 29.0 2.2 29 34-62 104-135 (337)
455 PRK10919 ATP-dependent DNA hel 41.2 13 0.00028 33.0 1.0 17 47-63 17-33 (672)
456 TIGR01613 primase_Cterm phage/ 41.2 14 0.0003 29.2 1.1 19 44-62 75-93 (304)
457 COG0396 sufC Cysteine desulfur 41.2 19 0.00041 28.1 1.7 26 39-64 18-52 (251)
458 PRK14956 DNA polymerase III su 41.1 35 0.00075 29.3 3.5 25 38-62 32-57 (484)
459 cd03255 ABC_MJ0796_Lo1CDE_FtsE 41.1 11 0.00023 27.9 0.4 16 47-62 32-47 (218)
460 COG1763 MobB Molybdopterin-gua 41.1 1.2E+02 0.0025 22.0 5.8 13 50-62 7-19 (161)
461 cd03258 ABC_MetN_methionine_tr 41.0 11 0.00024 28.3 0.5 18 45-62 31-48 (233)
462 COG1162 Predicted GTPases [Gen 41.0 38 0.00082 27.2 3.5 64 37-109 158-222 (301)
463 PF04670 Gtr1_RagA: Gtr1/RagA 41.0 13 0.00028 28.6 0.9 15 48-62 2-16 (232)
464 PRK14723 flhF flagellar biosyn 40.8 11 0.00025 34.0 0.6 17 46-62 186-202 (767)
465 cd00561 CobA_CobO_BtuR ATP:cor 40.8 9.7 0.00021 27.6 0.1 19 46-64 3-21 (159)
466 PF13481 AAA_25: AAA domain; P 40.8 9.7 0.00021 27.4 0.1 27 36-62 20-49 (193)
467 cd00983 recA RecA is a bacter 40.7 27 0.00059 28.3 2.7 29 34-62 40-72 (325)
468 KOG0925|consensus 40.7 18 0.00038 31.4 1.6 20 43-62 60-79 (699)
469 TIGR01587 cas3_core CRISPR-ass 40.6 14 0.0003 29.5 1.1 15 48-62 2-16 (358)
470 KOG0335|consensus 40.6 14 0.0003 31.5 1.1 58 41-105 109-189 (482)
471 cd01862 Rab7 Rab7 subfamily. 40.6 10 0.00022 26.3 0.3 16 47-62 2-17 (172)
472 COG0419 SbcC ATPase involved i 40.6 12 0.00025 34.4 0.7 26 45-70 25-57 (908)
473 PRK15424 propionate catabolism 40.5 20 0.00043 31.1 2.0 21 42-62 239-259 (538)
474 PRK13947 shikimate kinase; Pro 40.5 16 0.00034 25.8 1.2 16 47-62 3-18 (171)
475 cd02028 UMPK_like Uridine mono 40.5 14 0.00031 26.8 1.0 15 48-62 2-16 (179)
476 KOG0328|consensus 40.4 32 0.0007 27.8 3.0 25 36-62 57-81 (400)
477 PF01078 Mg_chelatase: Magnesi 40.3 24 0.00053 26.7 2.2 17 46-62 23-39 (206)
478 cd04119 RJL RJL (RabJ-Like) su 40.3 10 0.00023 26.0 0.3 16 47-62 2-17 (168)
479 PF05872 DUF853: Bacterial pro 40.3 13 0.00028 31.7 0.8 14 49-62 23-36 (502)
480 PLN03137 ATP-dependent DNA hel 40.3 23 0.00051 33.6 2.5 27 34-62 466-492 (1195)
481 PRK10689 transcription-repair 40.2 31 0.00067 32.8 3.3 37 21-61 601-637 (1147)
482 cd01983 Fer4_NifH The Fer4_Nif 40.2 12 0.00027 22.9 0.6 15 48-62 2-16 (99)
483 TIGR02974 phageshock_pspF psp 40.1 20 0.00043 28.8 1.9 20 43-62 20-39 (329)
484 TIGR00390 hslU ATP-dependent p 40.1 12 0.00026 31.6 0.6 17 46-62 48-64 (441)
485 TIGR03608 L_ocin_972_ABC putat 40.0 12 0.00025 27.5 0.5 16 47-62 26-41 (206)
486 TIGR00174 miaA tRNA isopenteny 40.0 15 0.00032 29.2 1.1 15 48-62 2-16 (287)
487 COG1100 GTPase SAR1 and relate 40.0 10 0.00023 27.7 0.2 17 46-62 6-22 (219)
488 cd03243 ABC_MutS_homologs The 39.9 13 0.00028 27.4 0.7 17 46-62 30-46 (202)
489 cd03226 ABC_cobalt_CbiO_domain 39.9 12 0.00025 27.5 0.5 16 47-62 28-43 (205)
490 COG1660 Predicted P-loop-conta 39.9 48 0.001 26.3 3.8 34 47-80 3-45 (286)
491 cd04160 Arfrp1 Arfrp1 subfamil 39.8 10 0.00023 26.3 0.2 16 47-62 1-16 (167)
492 PRK14955 DNA polymerase III su 39.8 33 0.00072 28.3 3.1 21 42-62 34-55 (397)
493 cd03275 ABC_SMC1_euk Eukaryoti 39.7 11 0.00025 28.7 0.4 16 47-62 24-39 (247)
494 cd03265 ABC_DrrA DrrA is the A 39.7 12 0.00025 27.9 0.5 17 46-62 27-43 (220)
495 COG3598 RepA RecA-family ATPas 39.6 13 0.00029 30.4 0.8 40 21-62 66-106 (402)
496 PLN02165 adenylate isopentenyl 39.6 15 0.00033 29.9 1.1 16 47-62 45-60 (334)
497 TIGR01166 cbiO cobalt transpor 39.4 12 0.00026 27.1 0.5 16 47-62 20-35 (190)
498 cd03218 ABC_YhbG The ABC trans 39.4 12 0.00026 28.0 0.5 17 46-62 27-43 (232)
499 cd04101 RabL4 RabL4 (Rab-like4 39.3 11 0.00024 26.0 0.3 15 48-62 3-17 (164)
500 cd03293 ABC_NrtD_SsuB_transpor 39.2 12 0.00026 27.8 0.5 16 47-62 32-47 (220)
No 1
>KOG4280|consensus
Probab=100.00 E-value=6.2e-42 Score=285.56 Aligned_cols=141 Identities=39% Similarity=0.725 Sum_probs=131.5
Q ss_pred CCCeEEEeceEeccCCCCCCCCCCHHHHHHHHhHHHHHHhhcCCCeeEEeeccCCCCCceeeccC-CCCCCcHHHHHHHH
Q psy12524 1 KPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYTMMGS-QDNKGIIPRLCDSL 79 (151)
Q Consensus 1 ~~~k~f~fD~vf~~~d~~~~~~~~q~~vy~~~~~~lv~~~~~G~~~~v~~yG~~~sGKt~t~~G~-~~~~Gli~~~~~~l 79 (151)
+++|+|+||.|| +++++|++||+.++.|+|+++++|||+||||||+|||||||||+|. +...|||||++++|
T Consensus 49 ~~~~~ftfD~vf-------~~~stQ~dvy~~~~~~lV~svl~GyNgtvFaYGQTGsGKTyTM~G~~~~~~GiiPraf~~L 121 (574)
T KOG4280|consen 49 GKPKSFTFDAVF-------DSDSTQDDVYQETVAPLVESVLEGYNGTVFAYGQTGSGKTYTMIGPDPELRGLIPRAFEHL 121 (574)
T ss_pred CCCCCceeeeee-------cCCCCHHHHHHHHhHHHHHHHhcccCceEEEeccCCCCCceEeeCCChhhCCchhHHHHHH
Confidence 468899999999 8899999999999999999999999999999999999999999998 56799999999999
Q ss_pred HHHHHhhcCCCceEEEEEEEEEEECCeeeecCCCCCCCceeeEEecCCCCeEEcCceEEEcCCHHHHhcCC
Q psy12524 80 FDLIAKQESSELTYKVEVSYMEIYNEKVHDLLDPKANKQSLKVREHNVLGPYVDGLSQLAVTSFQARANPT 150 (151)
Q Consensus 80 f~~~~~~~~~~~~~~v~~S~~eiy~e~v~DLL~~~~~~~~l~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll 150 (151)
|+.++..+... +|+|++||+|||||+|+|||++.+. +.|.++|+++.|+||+||+++.|.+++++..+|
T Consensus 122 F~~I~~~~~~~-~f~vrvS~lEiYnE~i~DLL~~~~~-~~l~lre~p~~Gv~V~nlse~~v~s~~d~~~~l 190 (574)
T KOG4280|consen 122 FRHIDERKEKT-RFLVRVSYLEIYNESIRDLLSPVNP-KGLELREDPKCGVYVENLSEMDVESAEDAQQLL 190 (574)
T ss_pred HHHHHhccccc-eEEEEeehHHHHhHHHHHHhCccCc-CCceeeEcCCCceEecCcceeecCCHHHHHHHH
Confidence 99999776444 8999999999999999999998753 589999999999999999999999999998775
No 2
>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a sec
Probab=100.00 E-value=5.5e-40 Score=263.51 Aligned_cols=139 Identities=34% Similarity=0.632 Sum_probs=130.2
Q ss_pred CCeEEEeceEeccCCCCCCCCCCHHHHHHHHhHHHHHHhhcCCCeeEEeeccCCCCCceeeccCCCCCCcHHHHHHHHHH
Q psy12524 2 PPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYTMMGSQDNKGIIPRLCDSLFD 81 (151)
Q Consensus 2 ~~k~f~fD~vf~~~d~~~~~~~~q~~vy~~~~~~lv~~~~~G~~~~v~~yG~~~sGKt~t~~G~~~~~Gli~~~~~~lf~ 81 (151)
++++|+||+|| +++++|++||+.++.|+|+++++|+|+||||||++||||||||+|+..++||+||++++||+
T Consensus 52 ~~~~f~Fd~vf-------~~~~~q~~vf~~~~~plv~~~~~G~n~~i~ayGqtGSGKTyTm~G~~~~~Giipr~~~~LF~ 124 (338)
T cd01370 52 KELKYSFDRVF-------DETSTQEEVYENTTKPLVDGVLNGYNATVFAYGATGAGKTHTMLGTDSDPGLMVLTMKDLFD 124 (338)
T ss_pred CceEEEecccc-------CCCCCHHHHHHHHHHHHHHHHHCCCCceEEeeCCCCCCCeEEEcCCCCCCchHHHHHHHHHH
Confidence 36899999999 88999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCceEEEEEEEEEEECCeeeecCCCCCCCceeeEEecCCCCeEEcCceEEEcCCHHHHhcCC
Q psy12524 82 LIAKQESSELTYKVEVSYMEIYNEKVHDLLDPKANKQSLKVREHNVLGPYVDGLSQLAVTSFQARANPT 150 (151)
Q Consensus 82 ~~~~~~~~~~~~~v~~S~~eiy~e~v~DLL~~~~~~~~l~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll 150 (151)
.++... .++.+.|.+||+|||||+|+|||++. ..++++++++.++++++|++++.|.|++|+.++|
T Consensus 125 ~i~~~~-~~~~~~v~vS~~EIyne~v~DLL~~~--~~~l~i~ed~~~~~~v~gl~~~~v~s~~e~~~~l 190 (338)
T cd01370 125 KIEERK-DDKEFEVSLSYLEIYNETIRDLLSPS--SGPLELREDPNQGIVVAGLTEHQPKSAEEILELL 190 (338)
T ss_pred hhhhcc-cCceEEEEEEEEEEECCEEEECCCCC--CCCceEEEcCCCCEEeCCcEEEEeCCHHHHHHHH
Confidence 998654 45789999999999999999999975 4579999999999999999999999999998765
No 3
>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.
Probab=100.00 E-value=1e-39 Score=263.59 Aligned_cols=149 Identities=63% Similarity=1.098 Sum_probs=137.1
Q ss_pred CCeEEEeceEeccCCCCCCCCCCHHHHHHHHhHHHHHHhhcCCCeeEEeeccCCCCCceeeccCCCCCCcHHHHHHHHHH
Q psy12524 2 PPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYTMMGSQDNKGIIPRLCDSLFD 81 (151)
Q Consensus 2 ~~k~f~fD~vf~~~d~~~~~~~~q~~vy~~~~~~lv~~~~~G~~~~v~~yG~~~sGKt~t~~G~~~~~Gli~~~~~~lf~ 81 (151)
.+++|+||+|||+.|......++|++||+.++.|+|+++++|+|+||+|||++||||||||+|+..++||+||++++||+
T Consensus 46 ~~~~f~FD~vf~~~~~~~~~~~tq~~vf~~~~~p~v~~~l~G~n~~i~ayGqtGSGKT~Tm~G~~~~~Gli~r~~~~Lf~ 125 (356)
T cd01365 46 KPKSFSFDHSYWSHDSEDPHYASQEDVFEDLGRELLDHAFEGYNVCLFAYGQTGSGKSYTMMGYKEEKGIIPRLCEELFQ 125 (356)
T ss_pred CceEEECCeEecccCCCCCCCCCHHHHHHHHHHHHHHHHhCCCceEEEEecCCCCCCeEEecCCCCCCchHHHHHHHHHH
Confidence 46789999999887766666799999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCceEEEEEEEEEEECCeeeecCCCCC-CCceeeEEecCCCCeEEcCceEEEcCCHHHHhcCC
Q psy12524 82 LIAKQESSELTYKVEVSYMEIYNEKVHDLLDPKA-NKQSLKVREHNVLGPYVDGLSQLAVTSFQARANPT 150 (151)
Q Consensus 82 ~~~~~~~~~~~~~v~~S~~eiy~e~v~DLL~~~~-~~~~l~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll 150 (151)
.++........+.|.+||+|||||+|+|||++.. .+..+++++++.+|++|+|++++.|.|++|+.++|
T Consensus 126 ~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~~~~~l~i~~~~~~g~~v~gl~~~~v~s~~e~~~~l 195 (356)
T cd01365 126 RIESKKEQNLSYEVEVSYMEIYNEKVRDLLNPKKKNKGNLKVREHPVLGPYVEDLSKVAVTSYEDIQNLL 195 (356)
T ss_pred HHhhccccCceEEEEEEEEEEECCeeeeCCCCCccCCcCceEEECCCCCEEeCCCEEEEeCCHHHHHHHH
Confidence 9987766567899999999999999999999764 34579999999999999999999999999998765
No 4
>KOG0245|consensus
Probab=100.00 E-value=2.5e-41 Score=290.82 Aligned_cols=149 Identities=57% Similarity=1.000 Sum_probs=139.9
Q ss_pred CCeEEEeceEeccCCCCCCCCCCHHHHHHHHhHHHHHHhhcCCCeeEEeeccCCCCCceeeccCC--CCCCcHHHHHHHH
Q psy12524 2 PPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYTMMGSQ--DNKGIIPRLCDSL 79 (151)
Q Consensus 2 ~~k~f~fD~vf~~~d~~~~~~~~q~~vy~~~~~~lv~~~~~G~~~~v~~yG~~~sGKt~t~~G~~--~~~Gli~~~~~~l 79 (151)
....|+||+.||+||+.-+..++|..||+....++++++++|||+||||||+|||||+|||+|.. .++|||||++++|
T Consensus 45 ~~~~FtfD~SYWS~d~edPhfAsQ~qVYedlg~~mL~~AfEGYN~ClFAYGQTGSGKSYTMMG~~~~~e~GIIPrlCEeL 124 (1221)
T KOG0245|consen 45 DAPKFTFDYSYWSHDSEDPHFASQKQVYEDLGREMLDHAFEGYNVCLFAYGQTGSGKSYTMMGFQEPDEPGIIPRLCEEL 124 (1221)
T ss_pred cCCceecceeeecCCCCCCchhhHHHHHHHHhHHHHHHHhcccceEEEEeccCCCCcceeeeccCCCCCCCchhHHHHHH
Confidence 34569999999999988777899999999999999999999999999999999999999999987 7899999999999
Q ss_pred HHHHHhhcCCCceEEEEEEEEEEECCeeeecCCCCCCCceeeEEecCCCCeEEcCceEEEcCCHHHHhcCC
Q psy12524 80 FDLIAKQESSELTYKVEVSYMEIYNEKVHDLLDPKANKQSLKVREHNVLGPYVDGLSQLAVTSFQARANPT 150 (151)
Q Consensus 80 f~~~~~~~~~~~~~~v~~S~~eiy~e~v~DLL~~~~~~~~l~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll 150 (151)
|+++.....++..|.|.|||+|||||+|+|||+..+++..|++||++..|+||++|+.+.|+|+.++.+|+
T Consensus 125 F~ri~~nq~~~~sy~VevSymEIYcErVrDLL~~p~~kg~LRVREHP~lGPYVedLS~~aV~Sy~dI~~~m 195 (1221)
T KOG0245|consen 125 FSRIADNQSQQMSYSVEVSYMEIYCERVRDLLNAPKSKGGLRVREHPILGPYVEDLSKLAVTSYADIQDLM 195 (1221)
T ss_pred HHHHhhcccccceEEEEEeehhHHHHHHHHHhhCCCCCCCceeeccCccChhHhHhhhcccccHHHHHHHH
Confidence 99999988889999999999999999999999944467799999999999999999999999999998765
No 5
>KOG0242|consensus
Probab=100.00 E-value=4.5e-40 Score=281.70 Aligned_cols=137 Identities=42% Similarity=0.729 Sum_probs=130.3
Q ss_pred CeEEEeceEeccCCCCCCCCCCHHHHHHHHhHHHHHHhhcCCCeeEEeeccCCCCCceeeccCCCCCCcHHHHHHHHHHH
Q psy12524 3 PKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYTMMGSQDNKGIIPRLCDSLFDL 82 (151)
Q Consensus 3 ~k~f~fD~vf~~~d~~~~~~~~q~~vy~~~~~~lv~~~~~G~~~~v~~yG~~~sGKt~t~~G~~~~~Gli~~~~~~lf~~ 82 (151)
+..|.||+|| +++++|++||+..+.|+|.+++.|+|++|||||+|||||||||.|...+|||+|+++++||+.
T Consensus 52 ~~~y~FD~VF-------~~~~t~~~VYe~~tkpiv~~~l~G~N~TVFAYG~TgSGKTyTM~G~~~~PGii~la~~dif~~ 124 (675)
T KOG0242|consen 52 PEKYEFDRVF-------GEESTQEDVYERTTKPLLLSVLEGFNATVFAYGQTGSGKTYTMSGSEDDPGIIPLAMKDIFEK 124 (675)
T ss_pred ccceeeeeec-------CCCCCHHHHHHhccHHHHHHHhcCcccceeeecCCCCCCceEEeccCCCCCeeehHHHHHHHH
Confidence 4789999999 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCceEEEEEEEEEEECCeeeecCCCCCCCceeeEEecCCCCeEEcCceEEEcCCHHHHhcCC
Q psy12524 83 IAKQESSELTYKVEVSYMEIYNEKVHDLLDPKANKQSLKVREHNVLGPYVDGLSQLAVTSFQARANPT 150 (151)
Q Consensus 83 ~~~~~~~~~~~~v~~S~~eiy~e~v~DLL~~~~~~~~l~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll 150 (151)
+.... ++.|.+.+||+|||||.|+|||+++.. .|+|+||+.+|++|+||++..|.|.+++..||
T Consensus 125 I~~~~--~r~f~v~vSYlEIYNE~I~DLL~~~~~--~L~irED~~~gi~V~gL~e~~v~s~e~~~~ll 188 (675)
T KOG0242|consen 125 IDKSG--EREFSVRVSYLEIYNERIRDLLNPDGG--DLRLREDSEGGIVVPGLTEETVSSREELLELL 188 (675)
T ss_pred HHhcC--CceeEEEEEEEEEeccccccccCCCCC--CceEeEcCCCCEEecCCeeecCCCHHHHHHHH
Confidence 98665 779999999999999999999998644 69999999999999999999999999999875
No 6
>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, a
Probab=100.00 E-value=3.6e-39 Score=259.38 Aligned_cols=135 Identities=36% Similarity=0.628 Sum_probs=126.4
Q ss_pred CCeEEEeceEeccCCCCCCCCCCHHHHHHHHhHHHHHHhhcCCCeeEEeeccCCCCCceeeccCCCCCCcHHHHHHHHHH
Q psy12524 2 PPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYTMMGSQDNKGIIPRLCDSLFD 81 (151)
Q Consensus 2 ~~k~f~fD~vf~~~d~~~~~~~~q~~vy~~~~~~lv~~~~~G~~~~v~~yG~~~sGKt~t~~G~~~~~Gli~~~~~~lf~ 81 (151)
++++|.||+|| +++++|++||+.++.|+|+.+++|+|+||||||+|||||||||+|+..++||+||++++||+
T Consensus 53 ~~~~f~Fd~vf-------~~~~tq~~vy~~~~~p~v~~~l~G~n~ti~aYGqtGSGKTyTm~G~~~~~Gli~r~~~~lF~ 125 (345)
T cd01368 53 KETKFSFSKVF-------GPNTTQKEFFEGTALPLVQDLLKGKNSLLFTYGVTNSGKTYTMQGSPGDGGILPRSLDVIFN 125 (345)
T ss_pred CceEeecCeEE-------CCCCCHHHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCCeEEecCCCCCCchHHHHHHHHHH
Confidence 46789999999 89999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCceEEEEEEEEEEECCeeeecCCCCCC----CceeeEEecCCCCeEEcCceEEEcCCHHHHhcCC
Q psy12524 82 LIAKQESSELTYKVEVSYMEIYNEKVHDLLDPKAN----KQSLKVREHNVLGPYVDGLSQLAVTSFQARANPT 150 (151)
Q Consensus 82 ~~~~~~~~~~~~~v~~S~~eiy~e~v~DLL~~~~~----~~~l~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll 150 (151)
.+.. +.|.+||+|||||+|+|||++.+. ++++++++++.++++|+|++++.|.|++|+.++|
T Consensus 126 ~~~~-------~~v~~S~~EIyne~v~DLL~~~~~~~~~~~~l~i~ed~~~~~~i~gl~~~~v~s~~e~~~~l 191 (345)
T cd01368 126 SIGG-------YSVFVSYVEIYNNYIYDLLEDSPSSTKKRQSLRLREDHNGNMYVAGLTEVEVSSTEEAREVF 191 (345)
T ss_pred HHHh-------eeEEEEEEEEeCCEeEeCCCCccccccCCCceEEEECCCCCEEecCCEEEEeCCHHHHHHHH
Confidence 8764 889999999999999999987543 3579999999999999999999999999998764
No 7
>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second
Probab=100.00 E-value=4.8e-39 Score=257.96 Aligned_cols=140 Identities=44% Similarity=0.830 Sum_probs=127.0
Q ss_pred CCeEEEeceEeccCCCCCCCCCCHHHHHHHHhHHHHHHhhcCCCeeEEeeccCCCCCceeeccCCC--------CCCcHH
Q psy12524 2 PPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYTMMGSQD--------NKGIIP 73 (151)
Q Consensus 2 ~~k~f~fD~vf~~~d~~~~~~~~q~~vy~~~~~~lv~~~~~G~~~~v~~yG~~~sGKt~t~~G~~~--------~~Gli~ 73 (151)
++++|+||+|| +++++|++||+.++.|+|+.+++|+|+||||||+|||||||||+|+.. ++||+|
T Consensus 39 ~~~~f~FD~vf-------~~~~~q~~vy~~~~~p~v~~~~~G~n~ti~aYGqTGSGKTyTm~G~~~~~~~~~~~~~Giip 111 (337)
T cd01373 39 PPRMFTFDHVA-------DSNTNQEDVFQSVGKPLVEDCLSGYNGSIFAYGQTGSGKTYTMMGPSSSDDESPHGLQGVIP 111 (337)
T ss_pred CCcEEeCCeEe-------CCCCCHHHHHHHHHHHHHHHHhCCCceeEEEeCCCCCCceEEecCCCCccccccccCCCHHH
Confidence 46899999999 889999999999999999999999999999999999999999999753 589999
Q ss_pred HHHHHHHHHHHhhc---CCCceEEEEEEEEEEECCeeeecCCCCCCCceeeEEecCCCCeEEcCceEEEcCCHHHHhcCC
Q psy12524 74 RLCDSLFDLIAKQE---SSELTYKVEVSYMEIYNEKVHDLLDPKANKQSLKVREHNVLGPYVDGLSQLAVTSFQARANPT 150 (151)
Q Consensus 74 ~~~~~lf~~~~~~~---~~~~~~~v~~S~~eiy~e~v~DLL~~~~~~~~l~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll 150 (151)
|++++||+.++... .....+.|.+||+|||||+|+|||++.. ..+++++++.++++|+|++++.|.|++|+.++|
T Consensus 112 r~~~~Lf~~i~~~~~~~~~~~~~~v~~S~~EIyne~v~DLL~~~~--~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll 189 (337)
T cd01373 112 RIFEYLFSLIQREEEKRGDGLKFLCKCSFLEIYNEQITDLLDPTS--RNLKIREDIKKGVYVENLTEEYVSSYEDVYQVL 189 (337)
T ss_pred HHHHHHHHHHHhhhhhcccCceEEEEEEEEeecCCEeeeCCCCCC--CCceEEECCCCCEEeCCCEEEEeCCHHHHHHHH
Confidence 99999999886542 2345789999999999999999998753 479999999999999999999999999998875
No 8
>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and lo
Probab=100.00 E-value=9.8e-39 Score=254.79 Aligned_cols=135 Identities=34% Similarity=0.556 Sum_probs=127.1
Q ss_pred CeEEEeceEeccCCCCCCCCCCHHHHHHHHhHHHHHHhhcCCCeeEEeeccCCCCCceeeccCCCCCCcHHHHHHHHHHH
Q psy12524 3 PKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYTMMGSQDNKGIIPRLCDSLFDL 82 (151)
Q Consensus 3 ~k~f~fD~vf~~~d~~~~~~~~q~~vy~~~~~~lv~~~~~G~~~~v~~yG~~~sGKt~t~~G~~~~~Gli~~~~~~lf~~ 82 (151)
+++|+||+|| +++++|++||+.++.|+|+.+++|+|+||||||++||||||||+|+..++||+||++++||+.
T Consensus 50 ~~~f~FD~vf-------~~~~~q~~vf~~~~~plv~~~~~G~n~~i~ayGqtGSGKTyTm~G~~~~~Glipr~~~~lf~~ 122 (322)
T cd01367 50 KHTFRFDYVF-------DEAVTNEEVYRSTVKPLIPHVFEGGVATCFAYGQTGSGKTYTMLGDENQEGLYALAARDIFRL 122 (322)
T ss_pred CceEecceEE-------CCCCCHHHHHHHHHHHHHHHHhCCCceEEEeccCCCCCCceEecCcCCcCccHHHHHHHHHHH
Confidence 5899999999 889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCceEEEEEEEEEEECCeeeecCCCCCCCceeeEEecCCCCeEEcCceEEEcCCHHHHhcCC
Q psy12524 83 IAKQESSELTYKVEVSYMEIYNEKVHDLLDPKANKQSLKVREHNVLGPYVDGLSQLAVTSFQARANPT 150 (151)
Q Consensus 83 ~~~~~~~~~~~~v~~S~~eiy~e~v~DLL~~~~~~~~l~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll 150 (151)
++... ..+.|.+||+|||||+++|||++ +.++++++++.++++|+|+++++|.|++|+.++|
T Consensus 123 ~~~~~---~~~~v~~S~~EIy~e~v~DLL~~---~~~l~i~~~~~~~~~v~~l~~~~v~s~~e~~~~l 184 (322)
T cd01367 123 LAQPN---DDLGVTVSFFEIYGGKLFDLLND---RKRLSVLEDGKGNVQIVGLTEKPVTSVDELLELI 184 (322)
T ss_pred Hhccc---cccEEEEEEEeeecCchhhhccC---ccceeEEEcCCCCEEeCCCEEEEeCCHHHHHHHH
Confidence 87544 57899999999999999999986 4579999999999999999999999999998764
No 9
>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through
Probab=100.00 E-value=6.9e-38 Score=249.62 Aligned_cols=137 Identities=36% Similarity=0.568 Sum_probs=127.2
Q ss_pred CCeEEEeceEeccCCCCCCCCCCHHHHHHHHhHHHHHHhhcCCCeeEEeeccCCCCCceeeccCCCCCCcHHHHHHHHHH
Q psy12524 2 PPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYTMMGSQDNKGIIPRLCDSLFD 81 (151)
Q Consensus 2 ~~k~f~fD~vf~~~d~~~~~~~~q~~vy~~~~~~lv~~~~~G~~~~v~~yG~~~sGKt~t~~G~~~~~Gli~~~~~~lf~ 81 (151)
.+++|+||+|| +++++|++||+.++.|+|+.+++|+|+||++||++||||||||+|+..++||+||++++||+
T Consensus 45 ~~~~f~FD~vf-------~~~~~q~~vy~~~~~plv~~~~~G~n~~i~ayG~tgSGKTyTm~G~~~~~Glipr~~~~Lf~ 117 (319)
T cd01376 45 ETKKYQFDAFY-------GTECTQEDIFSREVKPIVPHLLSGQNATVFAYGSTGAGKTHTMLGDPNEPGLIPRTLSDLLR 117 (319)
T ss_pred CccEEecCeEE-------CCCCCHHHHHHHHHHHHHHHHhCCCceEEEEECCCCCCCcEEEeCCcCccchHHHHHHHHHH
Confidence 46899999999 88999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCceEEEEEEEEEEECCeeeecCCCCCCCceeeEEecCCCCeEEcCceEEEcCCHHHHhcCC
Q psy12524 82 LIAKQESSELTYKVEVSYMEIYNEKVHDLLDPKANKQSLKVREHNVLGPYVDGLSQLAVTSFQARANPT 150 (151)
Q Consensus 82 ~~~~~~~~~~~~~v~~S~~eiy~e~v~DLL~~~~~~~~l~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll 150 (151)
.++.. .+.+.|.+||+|||+|+++|||++. +..+++++++.++++++|++++.|.|++|+.+++
T Consensus 118 ~~~~~---~~~~~v~~S~~EIy~e~v~DLL~~~--~~~l~i~~~~~~~~~v~gl~~~~v~s~~e~~~~l 181 (319)
T cd01376 118 MGRKQ---AWTGAFSMSYYEIYNEKVYDLLEPA--KKELPIREDKDGNILIVGLTSKPIKSMAEFEEAY 181 (319)
T ss_pred HHhhc---cccceEEEEEEEEECCEeeEccCCC--CCCceEEEcCCCCEEeeCCEEEEeCCHHHHHHHH
Confidence 87644 3578999999999999999999975 3479999999999999999999999999998764
No 10
>cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to
Probab=100.00 E-value=1.2e-37 Score=248.32 Aligned_cols=138 Identities=38% Similarity=0.690 Sum_probs=129.0
Q ss_pred CCeEEEeceEeccCCCCCCCCCCHHHHHHHHhHHHHHHhhcCCCeeEEeeccCCCCCceeeccCCCCCCcHHHHHHHHHH
Q psy12524 2 PPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYTMMGSQDNKGIIPRLCDSLFD 81 (151)
Q Consensus 2 ~~k~f~fD~vf~~~d~~~~~~~~q~~vy~~~~~~lv~~~~~G~~~~v~~yG~~~sGKt~t~~G~~~~~Gli~~~~~~lf~ 81 (151)
.+++|+||+|| +++++|++||+.++.|+|+.+++|+|++|++||++||||||||+|+..++||+||++++||+
T Consensus 38 ~~~~f~fd~vf-------~~~~~q~~vy~~~~~p~v~~~l~G~n~~i~ayG~tgSGKT~T~~G~~~~~Gli~r~~~~lf~ 110 (321)
T cd01374 38 PGQSFTFDRVF-------GGESTNREVYERIAKPVVRSALEGYNGTIFAYGQTSSGKTFTMSGDEQEPGIIPLAVRDIFQ 110 (321)
T ss_pred CCeEEecCeEE-------CCCCCHHHHHHHHHHHHHHHHHCCCceeEEeecCCCCCCceeccCCCCCCchHHHHHHHHHH
Confidence 46899999999 88999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCceEEEEEEEEEEECCeeeecCCCCCCCceeeEEecCCCCeEEcCceEEEcCCHHHHhcCC
Q psy12524 82 LIAKQESSELTYKVEVSYMEIYNEKVHDLLDPKANKQSLKVREHNVLGPYVDGLSQLAVTSFQARANPT 150 (151)
Q Consensus 82 ~~~~~~~~~~~~~v~~S~~eiy~e~v~DLL~~~~~~~~l~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll 150 (151)
.++... +..+.|++||+|||||+|+|||++.+ ..+++++++.+|++++|++++.|.|++|+.++|
T Consensus 111 ~~~~~~--~~~~~v~~S~~Eiy~e~v~DLL~~~~--~~l~i~~~~~~~~~v~gl~~~~v~s~~e~~~~l 175 (321)
T cd01374 111 RIQDTP--DREFLLRVSYLEIYNEKIKDLLSPSP--QELRIREDPNKGVVVAGLTEEIVTSPEHLLQLI 175 (321)
T ss_pred HHhccc--CceEEEEEEEEEEEcCEeEEccCCCC--CCceEEECCCCCEEeCCceEEEeCCHHHHHHHH
Confidence 987554 55899999999999999999999764 479999999999999999999999999998764
No 11
>cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain
Probab=100.00 E-value=1.4e-37 Score=249.22 Aligned_cols=139 Identities=42% Similarity=0.737 Sum_probs=128.8
Q ss_pred CCeEEEeceEeccCCCCCCCCCCHHHHHHHHhHHHHHHhhcCCCeeEEeeccCCCCCceeeccCCC---CCCcHHHHHHH
Q psy12524 2 PPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYTMMGSQD---NKGIIPRLCDS 78 (151)
Q Consensus 2 ~~k~f~fD~vf~~~d~~~~~~~~q~~vy~~~~~~lv~~~~~G~~~~v~~yG~~~sGKt~t~~G~~~---~~Gli~~~~~~ 78 (151)
.+++|+||+|| +++++|++||+.++.|+|+++++|+|+||+|||++||||||||+|+.. .+||+||++++
T Consensus 46 ~~~~f~fd~vf-------~~~~~q~~vy~~~~~plv~~~~~G~n~~i~ayG~tgSGKTyTm~G~~~~~~~~Glipr~~~~ 118 (333)
T cd01371 46 PPKVFTFDAVY-------DPNSTQEDVYNETARPLVDSVLEGYNGTIFAYGQTGTGKTFTMEGVREPPELRGIIPNSFAH 118 (333)
T ss_pred CCceeeecccc-------CCCccHHHHHHHHHHHHHHHHhCCCceeEEecCCCCCCCcEeecCCCCcccccchHHHHHHH
Confidence 46889999999 889999999999999999999999999999999999999999999887 89999999999
Q ss_pred HHHHHHhhcCCCceEEEEEEEEEEECCeeeecCCCCCCCceeeEEecCCCCeEEcCceEEEcCCHHHHhcCC
Q psy12524 79 LFDLIAKQESSELTYKVEVSYMEIYNEKVHDLLDPKANKQSLKVREHNVLGPYVDGLSQLAVTSFQARANPT 150 (151)
Q Consensus 79 lf~~~~~~~~~~~~~~v~~S~~eiy~e~v~DLL~~~~~~~~l~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll 150 (151)
||+.++.... ..+.|.+||+|||||+|+|||++.. ...+++++++.++++|+|++++.|.|++|+.++|
T Consensus 119 Lf~~~~~~~~--~~~~v~~S~~Eiy~e~v~DLL~~~~-~~~l~i~~~~~~~~~v~~l~~~~v~s~~~~~~~l 187 (333)
T cd01371 119 IFGHIAKAEN--VQFLVRVSYLEIYNEEVRDLLGKDQ-KKKLELKERPDRGVYVKDLSMFVVKNAEEMDKLM 187 (333)
T ss_pred HHHHHhhccC--ccEEEEEEEEEeeCCeeeeCCCCCC-CCceeEEEcCCCCEEeCCCEEEEeCCHHHHHHHH
Confidence 9999876543 5799999999999999999999754 3579999999999999999999999999998764
No 12
>KOG0243|consensus
Probab=100.00 E-value=1e-38 Score=277.18 Aligned_cols=138 Identities=38% Similarity=0.671 Sum_probs=126.2
Q ss_pred CeEEEeceEeccCCCCCCCCCCHHHHHHHHhHHHHHHhhcCCCeeEEeeccCCCCCceeecc--------CCCCCCcHHH
Q psy12524 3 PKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYTMMG--------SQDNKGIIPR 74 (151)
Q Consensus 3 ~k~f~fD~vf~~~d~~~~~~~~q~~vy~~~~~~lv~~~~~G~~~~v~~yG~~~sGKt~t~~G--------~~~~~Gli~~ 74 (151)
.|+|+||+|| ++.+.|.++|+.++.|+|+.|+.||||||||||+||+||||||.| .++++|||||
T Consensus 94 ~k~ftFDkVF-------Gpes~Q~d~Y~~~v~p~i~eVl~GyNCTIFAYGQTGTGKTyTMeG~~~~~~g~l~~~aGIIPR 166 (1041)
T KOG0243|consen 94 DKTFTFDKVF-------GPESQQEDLYDQAVSPIIKEVLEGYNCTIFAYGQTGTGKTYTMEGGERKKNGELPSEAGIIPR 166 (1041)
T ss_pred cceeecceee-------CcchhHHHHHHHHHHHHHHHHhccCCceEEEecCCCCCceeeeecCcccccCCCCccCCcchH
Confidence 5789999999 999999999999999999999999999999999999999999999 4678999999
Q ss_pred HHHHHHHHHHhhcCCCceEEEEEEEEEEECCeeeecCCCCCCC-ceeeEEecC-----CCCeEEcCceEEEcCCHHHHhc
Q psy12524 75 LCDSLFDLIAKQESSELTYKVEVSYMEIYNEKVHDLLDPKANK-QSLKVREHN-----VLGPYVDGLSQLAVTSFQARAN 148 (151)
Q Consensus 75 ~~~~lf~~~~~~~~~~~~~~v~~S~~eiy~e~v~DLL~~~~~~-~~l~i~e~~-----~~g~~v~gl~~~~v~s~~e~~~ 148 (151)
++.+||..++... ..|+|+|||+|+|||.++|||+++... ..+++++++ .+|++|+||.|+.|.++.|+.+
T Consensus 167 al~~IFd~Le~~~---~EYsvKVSfLELYNEEl~DLLa~~~~~~~~~~~k~~~~~~~~kggV~vkGlEEi~V~~A~ei~k 243 (1041)
T KOG0243|consen 167 ALRQIFDTLEAQG---AEYSVKVSFLELYNEELTDLLASEDTSDKKLRIKDDSTIVDGKGGVIVKGLEEIIVTNADEIYK 243 (1041)
T ss_pred HHHHHHHHHHhcC---CeEEEEEEehhhhhHHHHHhcCCccccccccccccCCcccCCcCcEEEecceeeeecchhHHHH
Confidence 9999999988543 589999999999999999999987654 567777665 7889999999999999999998
Q ss_pred CC
Q psy12524 149 PT 150 (151)
Q Consensus 149 ll 150 (151)
||
T Consensus 244 lL 245 (1041)
T KOG0243|consen 244 LL 245 (1041)
T ss_pred HH
Confidence 86
No 13
>KOG0241|consensus
Probab=100.00 E-value=1.1e-38 Score=272.74 Aligned_cols=150 Identities=71% Similarity=1.169 Sum_probs=144.5
Q ss_pred CCCeEEEeceEeccCCCCCCCCCCHHHHHHHHhHHHHHHhhcCCCeeEEeeccCCCCCceeeccCCCCCCcHHHHHHHHH
Q psy12524 1 KPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYTMMGSQDNKGIIPRLCDSLF 80 (151)
Q Consensus 1 ~~~k~f~fD~vf~~~d~~~~~~~~q~~vy~~~~~~lv~~~~~G~~~~v~~yG~~~sGKt~t~~G~~~~~Gli~~~~~~lf 80 (151)
|.||+|+||++||+.|+-...-++|+.||+....-+++.+|+|||+|+||||++||||+|+|+|...+||||||.++.||
T Consensus 50 k~pktFAFDhcF~s~dpes~n~agQE~Vf~~lG~~il~naf~GyNaCifaYGQtGsGKsYsmmGt~~QpGiIPrlc~~lF 129 (1714)
T KOG0241|consen 50 KGPKTFAFDHCFWSMDPESKNYAGQETVFKCLGEGILENAFQGYNACIFAYGQTGSGKSYSMMGTAEQPGIIPRLCESLF 129 (1714)
T ss_pred CCCceeecccccccCCccccccccchhHHHhcchHHHHHHhhccceeeEEecccCCCceeEeeccCCCCCchhHHHHHHH
Confidence 57999999999999998777779999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCceEEEEEEEEEEECCeeeecCCCCCCCceeeEEecCCCCeEEcCceEEEcCCHHHHhcCC
Q psy12524 81 DLIAKQESSELTYKVEVSYMEIYNEKVHDLLDPKANKQSLKVREHNVLGPYVDGLSQLAVTSFQARANPT 150 (151)
Q Consensus 81 ~~~~~~~~~~~~~~v~~S~~eiy~e~v~DLL~~~~~~~~l~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll 150 (151)
..+......+..|+|.+||+|||||+++|||.|+.+++.|++++|.-.|+||.||++..|+|++|+..||
T Consensus 130 e~I~k~~n~~~tfkVeVSymEIynEkv~DLLdPk~ssqtlkVrehsvlGp~vdGLS~laV~S~qdId~lm 199 (1714)
T KOG0241|consen 130 ERIDKESNPSQTFKVEVSYMEIYNEKVRDLLDPKGSSQTLKVREHSVLGPYVDGLSQLAVTSFQDIDSLM 199 (1714)
T ss_pred HHHHhccCCCceEEEEEEHHHHhhcchhhhhCCCCCcceeEEeecccccccccchhhhhcccHHHHHHHH
Confidence 9999998889999999999999999999999999999999999999999999999999999999998775
No 14
>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80
Probab=100.00 E-value=4.4e-37 Score=246.38 Aligned_cols=139 Identities=40% Similarity=0.665 Sum_probs=126.8
Q ss_pred CCeEEEeceEeccCCCCCCCCCCHHHHHHHHhHHHHHHhhcCCCeeEEeeccCCCCCceeeccCC---CCCCcHHHHHHH
Q psy12524 2 PPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYTMMGSQ---DNKGIIPRLCDS 78 (151)
Q Consensus 2 ~~k~f~fD~vf~~~d~~~~~~~~q~~vy~~~~~~lv~~~~~G~~~~v~~yG~~~sGKt~t~~G~~---~~~Gli~~~~~~ 78 (151)
.+++|+||+|| ++ ++|++||+.++.|+|+++++|+|+||+|||++||||||||+|+. .++||+||++++
T Consensus 46 ~~~~f~FD~vf-------~~-~~q~~vy~~~~~p~v~~~~~G~n~~i~ayG~tgSGKTyTm~G~~~~~~~~Glipr~~~~ 117 (334)
T cd01375 46 EDFSFKFDGVF-------HN-ASQEEVYETVAKPVVDSALDGYNGTIFAYGQTGAGKTFTMTGGTESYKDRGLIPRALEQ 117 (334)
T ss_pred CceEEEcCccc-------CC-CCHHHHHHHHHHHHHHHHhCCCccceeeecCCCCCCeEEccCCCCcccCCchHHHHHHH
Confidence 35789999999 78 99999999999999999999999999999999999999999976 479999999999
Q ss_pred HHHHHHhhcCCCceEEEEEEEEEEECCeeeecCCCCC----CCceeeEEecCCCCeEEcCceEEEcCCHHHHhcCC
Q psy12524 79 LFDLIAKQESSELTYKVEVSYMEIYNEKVHDLLDPKA----NKQSLKVREHNVLGPYVDGLSQLAVTSFQARANPT 150 (151)
Q Consensus 79 lf~~~~~~~~~~~~~~v~~S~~eiy~e~v~DLL~~~~----~~~~l~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll 150 (151)
||+.++... +..+.|.+||+|||||+++|||++.. ....+++++++.++++|+|++++.|.+++|+.+++
T Consensus 118 lf~~~~~~~--~~~~~v~~S~~Eiy~e~v~DLL~~~~~~~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~~ 191 (334)
T cd01375 118 VFREVAMRA--TKTYTVHVSYLEIYNEQLYDLLGDTPEALESLPAVTILEDSEQNIHVKGLSLHSATTEEEALNLL 191 (334)
T ss_pred HHHHHHhcc--CcceEEEEEEEEEECCEeecCCCCCccccccCCceEEEEcCCCCEEeCCcEEEEeCCHHHHHHHH
Confidence 999987654 45789999999999999999999874 24579999999999999999999999999998764
No 15
>PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. The kinesin motor domain is located in the N-terminal part of most of the above proteins, with the exception of KAR3, klpA, and ncd where it is located in the C-terminal section. The kinesin motor domain contains about 330 amino acids. An ATP-binding motif of type A is found near position 80 to 90, the C-terminal half of the domain is involved in microtubule-binding.; GO: 0003777 microtubule motor activity, 0005524 ATP binding, 0007018 microtubule-based movement; PDB: 3NWN_A 2Y5W_A 2Y65_C 3BFN_A 2WBE_C 2ZFL_A 2ZFI_A 1I6I_A 2ZFM_A 1IA0_K ....
Probab=100.00 E-value=3.6e-37 Score=246.52 Aligned_cols=142 Identities=44% Similarity=0.760 Sum_probs=129.5
Q ss_pred CCeEEEeceEeccCCCCCCCCCCHHHHHHHHhHHHHHHhhcCCCeeEEeeccCCCCCceeeccC--CCCCCcHHHHHHHH
Q psy12524 2 PPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYTMMGS--QDNKGIIPRLCDSL 79 (151)
Q Consensus 2 ~~k~f~fD~vf~~~d~~~~~~~~q~~vy~~~~~~lv~~~~~G~~~~v~~yG~~~sGKt~t~~G~--~~~~Gli~~~~~~l 79 (151)
..++|+||+|| +++++|++||+.++.|+|+++++|+|+||++||++||||||||+|+ ..++||+|+++++|
T Consensus 39 ~~~~f~FD~vf-------~~~~~q~~vy~~~~~~~v~~~l~G~n~~i~ayG~tgSGKT~Tm~G~~~~~~~Gli~~~~~~l 111 (335)
T PF00225_consen 39 KEKSFRFDRVF-------DEDATQEDVYEEVVSPLVDSVLDGYNATIFAYGQTGSGKTYTMFGSNDPSEPGLIPRALRDL 111 (335)
T ss_dssp EEEEEEESEEE-------ETTSTHHHHHHHHTHHHHHHHHTT-EEEEEEEESTTSSHHHHHTBSTSTTTBSHHHHHHHHH
T ss_pred CceEEEcCeEE-------CCCCCHHHHHHHHHHHHHHHhhcCCceEEEeeccccccccccccccccccccchhhhHHHHH
Confidence 35789999999 7899999999999999999999999999999999999999999999 88999999999999
Q ss_pred HHHHHhhcCC-CceEEEEEEEEEEECCeeeecCCCCC--CCceeeEEecCCCC-eEEcCceEEEcCCHHHHhcCC
Q psy12524 80 FDLIAKQESS-ELTYKVEVSYMEIYNEKVHDLLDPKA--NKQSLKVREHNVLG-PYVDGLSQLAVTSFQARANPT 150 (151)
Q Consensus 80 f~~~~~~~~~-~~~~~v~~S~~eiy~e~v~DLL~~~~--~~~~l~i~e~~~~g-~~v~gl~~~~v~s~~e~~~ll 150 (151)
|+.++..... ...+.|++||+|||+|+|+|||++.+ ....+++++++..| ++++|++++.|.|++|+.++|
T Consensus 112 f~~~~~~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~~l~i~~~~~~g~~~i~~l~~~~v~s~~~~~~~l 186 (335)
T PF00225_consen 112 FSQIEERKEKSGYEFSVSVSYLEIYNEKVYDLLSPNNSKSRKPLKIREDSNKGSVYIKGLTEVEVKSAEEALQLL 186 (335)
T ss_dssp HHHHHHHTTTSTEEEEEEEEEEEEETTEEEETTSTTSSSTTSEBEEEEETTTEEEEETTSEEEEESSHHHHHHHH
T ss_pred hhhhccccccccccccccccchhhhhhhhhhhcCccccccccccceeeccccccceeeccccccccccccccccc
Confidence 9999876543 46899999999999999999999873 34589999999987 999999999999999998764
No 16
>cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-c
Probab=100.00 E-value=8.4e-37 Score=243.84 Aligned_cols=139 Identities=45% Similarity=0.768 Sum_probs=128.9
Q ss_pred CCeEEEeceEeccCCCCCCCCCCHHHHHHHHhHHHHHHhhcCCCeeEEeeccCCCCCceeeccCCC---CCCcHHHHHHH
Q psy12524 2 PPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYTMMGSQD---NKGIIPRLCDS 78 (151)
Q Consensus 2 ~~k~f~fD~vf~~~d~~~~~~~~q~~vy~~~~~~lv~~~~~G~~~~v~~yG~~~sGKt~t~~G~~~---~~Gli~~~~~~ 78 (151)
..++|.||+|| +++++|++||+.++.|+|+.+++|+|++|++||++||||||||+|+.. .+||+||++++
T Consensus 41 ~~~~f~FD~vf-------~~~~~q~~vy~~~~~~~v~~~~~G~n~~i~ayG~tgSGKT~Tm~G~~~~~~~~Giipr~~~~ 113 (325)
T cd01369 41 DGKTFSFDRVF-------PPNTTQEDVYNFVAKPIVDDVLNGYNGTIFAYGQTGSGKTYTMEGPPGDPELKGIIPRIVHD 113 (325)
T ss_pred CceEEEcCeEE-------CCCCCHHHHHHHHHHHHHHHHHcCccceEEEeCCCCCCceEEecCCCCccccCChHHHHHHH
Confidence 46899999999 789999999999999999999999999999999999999999999987 89999999999
Q ss_pred HHHHHHhhcCCCceEEEEEEEEEEECCeeeecCCCCCCCceeeEEecCCCCeEEcCceEEEcCCHHHHhcCC
Q psy12524 79 LFDLIAKQESSELTYKVEVSYMEIYNEKVHDLLDPKANKQSLKVREHNVLGPYVDGLSQLAVTSFQARANPT 150 (151)
Q Consensus 79 lf~~~~~~~~~~~~~~v~~S~~eiy~e~v~DLL~~~~~~~~l~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll 150 (151)
||+.+... ..+..+.|++||+|||+|+++|||++. +..+++++++.+|++++|++++.|.|++|+.+++
T Consensus 114 Lf~~~~~~-~~~~~~~v~~S~~EIy~e~v~DLL~~~--~~~l~i~~~~~~~~~v~gl~~~~v~s~~e~~~~i 182 (325)
T cd01369 114 IFEHISSM-DENLEFHVKVSYLEIYMEKIRDLLDVS--KDNLQVHEDKNRGVYVKGLTERFVSSPEEVLEVI 182 (325)
T ss_pred HHHHHhhc-cCCceEEEEEEEEEEECCChhhcccCc--cCCceEEEcCCCCEEEcCCEEEEcCCHHHHHHHH
Confidence 99998765 345679999999999999999999975 3479999999999999999999999999998764
No 17
>PLN03188 kinesin-12 family protein; Provisional
Probab=100.00 E-value=3.9e-37 Score=270.33 Aligned_cols=139 Identities=38% Similarity=0.730 Sum_probs=126.3
Q ss_pred CeEEEeceEeccCCCCCCCCCCHHHHHHHHhHHHHHHhhcCCCeeEEeeccCCCCCceeeccCC----------CCCCcH
Q psy12524 3 PKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYTMMGSQ----------DNKGII 72 (151)
Q Consensus 3 ~k~f~fD~vf~~~d~~~~~~~~q~~vy~~~~~~lv~~~~~G~~~~v~~yG~~~sGKt~t~~G~~----------~~~Gli 72 (151)
.++|+||+|| +++++|++||+.++.|+|+.+++|+|+||||||+|||||||||+|+. .++||+
T Consensus 131 ~qtFtFD~VF-------dp~aTQedVFe~vv~PLV~svLdGyNaTIFAYGQTGSGKTYTM~G~~~~~~de~~s~~e~GII 203 (1320)
T PLN03188 131 GQTFTFDSIA-------DPESTQEDIFQLVGAPLVENCLAGFNSSVFAYGQTGSGKTYTMWGPANGLLEEHLSGDQQGLT 203 (1320)
T ss_pred CcEEeCCeee-------CCCCCHHHHHHHHHHHHHHHHhcCCcceeecCCCCCCCCCEeeCCCCCcccccccccccCCch
Confidence 4689999999 88999999999999999999999999999999999999999999963 468999
Q ss_pred HHHHHHHHHHHHhh----cCCCceEEEEEEEEEEECCeeeecCCCCCCCceeeEEecCCCCeEEcCceEEEcCCHHHHhc
Q psy12524 73 PRLCDSLFDLIAKQ----ESSELTYKVEVSYMEIYNEKVHDLLDPKANKQSLKVREHNVLGPYVDGLSQLAVTSFQARAN 148 (151)
Q Consensus 73 ~~~~~~lf~~~~~~----~~~~~~~~v~~S~~eiy~e~v~DLL~~~~~~~~l~i~e~~~~g~~v~gl~~~~v~s~~e~~~ 148 (151)
||++++||+.+... ......|.|++||+|||||+|+|||++.. ..|+|++++.+|++|.||+++.|.|++++.+
T Consensus 204 PRaledLF~~I~e~q~k~~d~~~~y~V~vSyLEIYNEkI~DLLsp~~--k~L~IRED~kgGv~VeGLTEv~V~S~ED~l~ 281 (1320)
T PLN03188 204 PRVFERLFARINEEQIKHADRQLKYQCRCSFLEIYNEQITDLLDPSQ--KNLQIREDVKSGVYVENLTEEYVKTMKDVTQ 281 (1320)
T ss_pred HHHHHHHHHHHHhhhhhccccccceEEEEEEEeeecCcceecccccc--CCceEEEcCCCCeEeCCCeEEeCCCHHHHHH
Confidence 99999999998643 22455799999999999999999999753 4799999999999999999999999999987
Q ss_pred CC
Q psy12524 149 PT 150 (151)
Q Consensus 149 ll 150 (151)
+|
T Consensus 282 LL 283 (1320)
T PLN03188 282 LL 283 (1320)
T ss_pred HH
Confidence 75
No 18
>cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for mi
Probab=100.00 E-value=1.7e-36 Score=242.34 Aligned_cols=141 Identities=40% Similarity=0.694 Sum_probs=130.8
Q ss_pred CCeEEEeceEeccCCCCCCCCCCHHHHHHHHhHHHHHHhhcCCCeeEEeeccCCCCCceeeccCCCCCCcHHHHHHHHHH
Q psy12524 2 PPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYTMMGSQDNKGIIPRLCDSLFD 81 (151)
Q Consensus 2 ~~k~f~fD~vf~~~d~~~~~~~~q~~vy~~~~~~lv~~~~~G~~~~v~~yG~~~sGKt~t~~G~~~~~Gli~~~~~~lf~ 81 (151)
..++|+||+|| +++++|++||+. +.|+|+++++|+|+||++||++||||||||+|...++||+||++++||+
T Consensus 43 ~~~~f~fD~vf-------~~~~~q~~v~~~-v~p~v~~~~~G~~~~i~ayG~tgSGKT~tl~G~~~~~Gli~r~~~~lf~ 114 (329)
T cd01366 43 KKKSFSFDRVF-------DPDASQEDVFEE-VSPLVQSALDGYNVCIFAYGQTGSGKTYTMEGPPENPGIIPRALEQLFN 114 (329)
T ss_pred CceEEecCEEE-------CCCCCHHHHHHH-HHHHHHHHhCCCceEEEEeCCCCCCCcEEecCCCCCCCcHHHHHHHHHH
Confidence 45789999999 889999999998 5999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCceEEEEEEEEEEECCeeeecCCCCC-CCceeeEEecCCCCeEEcCceEEEcCCHHHHhcCC
Q psy12524 82 LIAKQESSELTYKVEVSYMEIYNEKVHDLLDPKA-NKQSLKVREHNVLGPYVDGLSQLAVTSFQARANPT 150 (151)
Q Consensus 82 ~~~~~~~~~~~~~v~~S~~eiy~e~v~DLL~~~~-~~~~l~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll 150 (151)
.++........+.|.+||+|||+|+++|||++.+ .+..+++++++.++++++|++++.|.|++|+.+++
T Consensus 115 ~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~~~~~l~i~~~~~~~~~i~~l~~~~v~s~~e~~~~l 184 (329)
T cd01366 115 TAEELKEKGWSYTITASMLEIYNETIRDLLATKPAPKKKLEIKHDSKGETYVTNLTEVPVSSPEEVTRLL 184 (329)
T ss_pred HHHhhhccCceEEEEEEEEEEECCEeEECCCCCcCCCCceEEEECCCCCEEecCCEEEEeCCHHHHHHHH
Confidence 9987766577999999999999999999999753 35689999999999999999999999999998764
No 19
>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain,
Probab=100.00 E-value=8.4e-37 Score=245.19 Aligned_cols=140 Identities=39% Similarity=0.662 Sum_probs=128.3
Q ss_pred CeEEEeceEeccCCCCCCCCCCHHHHHHHHhHHHHHHhhcCCCeeEEeeccCCCCCceeeccCC------CCCCcHHHHH
Q psy12524 3 PKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYTMMGSQ------DNKGIIPRLC 76 (151)
Q Consensus 3 ~k~f~fD~vf~~~d~~~~~~~~q~~vy~~~~~~lv~~~~~G~~~~v~~yG~~~sGKt~t~~G~~------~~~Gli~~~~ 76 (151)
+++|+||+|| +++++|++||+.++.|+|+.+++|+|+|||+||++||||||||+|+. .++||+||++
T Consensus 39 ~~~f~FD~vf-------~~~~~q~~vy~~~~~plv~~~~~G~n~~i~ayG~tgSGKT~Tm~G~~~~~~~~~~~Giipr~~ 111 (341)
T cd01372 39 DKSFTFDYVF-------DPSTSQEEVYNTCVAPLVDGLFEGYNATVLAYGQTGSGKTYTMGTAFTASEDEEEVGIIPRAI 111 (341)
T ss_pred CcEEeccccC-------CCCCCHHHHHHHHHHHHHHHHhCCCccceeeecCCCCCCcEEecCCCccccccccCChHHHHH
Confidence 5789999999 78999999999999999999999999999999999999999999974 4799999999
Q ss_pred HHHHHHHHhhcCCCceEEEEEEEEEEECCeeeecCCCCC-CCceeeEEecCCCCeEEcCceEEEcCCHHHHhcCC
Q psy12524 77 DSLFDLIAKQESSELTYKVEVSYMEIYNEKVHDLLDPKA-NKQSLKVREHNVLGPYVDGLSQLAVTSFQARANPT 150 (151)
Q Consensus 77 ~~lf~~~~~~~~~~~~~~v~~S~~eiy~e~v~DLL~~~~-~~~~l~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll 150 (151)
++||+.++.... ...+.|.+||+|||||+++|||++.+ .+..+++++++.++++|.|++++.|.|++|+.++|
T Consensus 112 ~~LF~~~~~~~~-~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~l~i~e~~~~~~~i~gl~~~~v~s~~e~~~~l 185 (341)
T cd01372 112 QHIFKKIDEKKD-EPDFQLKVSFLELYNEEVRDLLSPSTSEKSPIQIREDSKGNIIIVGLTEVTVNSAQEVMSCL 185 (341)
T ss_pred HHHHHHHHhccc-cceEEEEEEEEEeECCeeecCCCCcccCCCCceEEECCCCCEecCCCEEEEECCHHHHHHHH
Confidence 999999986543 45899999999999999999999764 34589999999999999999999999999998764
No 20
>cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil d
Probab=100.00 E-value=1.3e-36 Score=245.18 Aligned_cols=139 Identities=39% Similarity=0.669 Sum_probs=126.7
Q ss_pred CCeEEEeceEeccCCCCCCCCCCHHHHHHHHhHHHHHHhhcCCCeeEEeeccCCCCCceeeccCCC-----------CCC
Q psy12524 2 PPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYTMMGSQD-----------NKG 70 (151)
Q Consensus 2 ~~k~f~fD~vf~~~d~~~~~~~~q~~vy~~~~~~lv~~~~~G~~~~v~~yG~~~sGKt~t~~G~~~-----------~~G 70 (151)
..++|+||+|| +++++|++||+.++.|+|+++++|+|++|||||++||||||||+|+.. .+|
T Consensus 46 ~~~~f~Fd~vf-------~~~~~q~~vy~~~~~plv~~~~~G~n~~i~ayG~tgSGKTyTl~G~~~~~~~~~~~~~~~~G 118 (352)
T cd01364 46 STKTYTFDKVF-------GPEADQIEVYSQVVSPILDEVLMGYNCTIFAYGQTGTGKTYTMEGDRTDNKGSTWELSPHAG 118 (352)
T ss_pred cceeEeccccC-------CCCCCHHHHHHHHHHHHHHHHhCCCeEEEEECCCCCCCCcEEecCCCcccccccccccccCC
Confidence 46789999999 889999999999999999999999999999999999999999999743 489
Q ss_pred cHHHHHHHHHHHHHhhcCCCceEEEEEEEEEEECCeeeecCCCCC-CCceeeEEec--CCCCeEEcCceEEEcCCHHHHh
Q psy12524 71 IIPRLCDSLFDLIAKQESSELTYKVEVSYMEIYNEKVHDLLDPKA-NKQSLKVREH--NVLGPYVDGLSQLAVTSFQARA 147 (151)
Q Consensus 71 li~~~~~~lf~~~~~~~~~~~~~~v~~S~~eiy~e~v~DLL~~~~-~~~~l~i~e~--~~~g~~v~gl~~~~v~s~~e~~ 147 (151)
|+||++++||+.++.. ...+.|++||+|||||+++|||++.. .+.+++++++ +.+|++|+|++++.|.|++|+.
T Consensus 119 lipr~~~~Lf~~~~~~---~~~~~v~~S~~EIy~e~v~DLL~~~~~~~~~l~i~e~~~~~~g~~v~gl~~~~v~s~~e~~ 195 (352)
T cd01364 119 IIPRALYQLFEKLESQ---NTEYSVKVSYLELYNEELFDLLSSESDLNKPLRIFDDTNNKGGVVIQGLEEITVNNANEGL 195 (352)
T ss_pred chHHHHHHHHHHHHhc---cceeEEEEEEEEeeCCeeeeCCCCccccCccceEEeccCcCCCEEeCCcEEEEeCCHHHHH
Confidence 9999999999998754 45899999999999999999999764 3557999999 6999999999999999999998
Q ss_pred cCC
Q psy12524 148 NPT 150 (151)
Q Consensus 148 ~ll 150 (151)
++|
T Consensus 196 ~~l 198 (352)
T cd01364 196 KLL 198 (352)
T ss_pred HHH
Confidence 764
No 21
>cd00106 KISc Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coil
Probab=100.00 E-value=4.1e-36 Score=239.78 Aligned_cols=142 Identities=44% Similarity=0.793 Sum_probs=132.2
Q ss_pred CCeEEEeceEeccCCCCCCCCCCHHHHHHHHhHHHHHHhhcCCCeeEEeeccCCCCCceeeccCCCCCCcHHHHHHHHHH
Q psy12524 2 PPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYTMMGSQDNKGIIPRLCDSLFD 81 (151)
Q Consensus 2 ~~k~f~fD~vf~~~d~~~~~~~~q~~vy~~~~~~lv~~~~~G~~~~v~~yG~~~sGKt~t~~G~~~~~Gli~~~~~~lf~ 81 (151)
++++|.||+|| +++++|++||+.++.|+|+++++|+|++|++||++||||||||+|+..++||+|+++++||+
T Consensus 43 ~~~~f~fd~vf-------~~~~~q~~v~~~~~~~~v~~~~~G~~~~i~~yG~tgSGKT~tl~G~~~~~Gli~~~~~~Lf~ 115 (328)
T cd00106 43 GPKSFTFDHVF-------DPNSTQEDVYETTAKPLVESVLEGYNGTIFAYGQTGSGKTYTMFGSPKDPGIIPRALEDLFN 115 (328)
T ss_pred CceEEECCeEE-------cCCCCHHHHHHHHHHHHHHHHhCCCceeEEEecCCCCCCeEEecCCCCCCchHHHHHHHHHH
Confidence 36899999999 78899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCceEEEEEEEEEEECCeeeecCCCCCCCceeeEEecCCCCeEEcCceEEEcCCHHHHhcCC
Q psy12524 82 LIAKQESSELTYKVEVSYMEIYNEKVHDLLDPKANKQSLKVREHNVLGPYVDGLSQLAVTSFQARANPT 150 (151)
Q Consensus 82 ~~~~~~~~~~~~~v~~S~~eiy~e~v~DLL~~~~~~~~l~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll 150 (151)
.+.........+.|.+||+|||+|+++|||++.+.+..+++++++.+++++.|++++.|.|++|+.+++
T Consensus 116 ~~~~~~~~~~~~~v~~S~~Ei~~e~v~DLL~~~~~~~~l~i~~~~~~~~~v~~l~~~~v~s~~e~~~~l 184 (328)
T cd00106 116 LIDERKEKNKSFSVSVSYLEIYNEKVYDLLSPEPPSKPLSLREDPKGGVYVKGLTEVEVGSAEDALSLL 184 (328)
T ss_pred HHhhccccCceEEEEEEEEEEECCEeEECCCCCCCCCCcEEEEcCCCCEEEeCCEEEEeCCHHHHHHHH
Confidence 988665445689999999999999999999986446689999999999999999999999999998764
No 22
>smart00129 KISc Kinesin motor, catalytic domain. ATPase. Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.
Probab=100.00 E-value=2.9e-35 Score=235.63 Aligned_cols=139 Identities=49% Similarity=0.824 Sum_probs=129.5
Q ss_pred CCeEEEeceEeccCCCCCCCCCCHHHHHHHHhHHHHHHhhcCCCeeEEeeccCCCCCceeeccCCCCCCcHHHHHHHHHH
Q psy12524 2 PPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYTMMGSQDNKGIIPRLCDSLFD 81 (151)
Q Consensus 2 ~~k~f~fD~vf~~~d~~~~~~~~q~~vy~~~~~~lv~~~~~G~~~~v~~yG~~~sGKt~t~~G~~~~~Gli~~~~~~lf~ 81 (151)
++++|+||+|| +++++|+++|+.++.|+|+.+++|+|++|++||++||||||||+|+..++||+|+++++||+
T Consensus 44 ~~~~f~fD~vf-------~~~~~q~~v~~~~~~p~v~~~~~G~~~~i~~yG~tgSGKT~tl~G~~~~~Gli~~~~~~Lf~ 116 (335)
T smart00129 44 EEKKFTFDKVF-------GATASQEDVFEETAAPLVDSVLEGYNATIFAYGQTGSGKTYTMSGTPDSPGIIPRALKDLFE 116 (335)
T ss_pred CCeEEecCEEE-------CCCCChHHHHHHHHHHHHHHHhcCCceeEEEeCCCCCCCceEecCCCCCCCHHHHHHHHHHH
Confidence 46899999999 89999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCceEEEEEEEEEEECCeeeecCCCCCCCceeeEEecCCCCeEEcCceEEEcCCHHHHhcCC
Q psy12524 82 LIAKQESSELTYKVEVSYMEIYNEKVHDLLDPKANKQSLKVREHNVLGPYVDGLSQLAVTSFQARANPT 150 (151)
Q Consensus 82 ~~~~~~~~~~~~~v~~S~~eiy~e~v~DLL~~~~~~~~l~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll 150 (151)
.+.... ....+.|.+||+|||+|+++|||++. +..+++++++.++++++|++++.|.|++|+.+++
T Consensus 117 ~~~~~~-~~~~~~v~~S~~ei~~e~v~DLL~~~--~~~l~i~~~~~~~~~i~~l~~~~v~s~~e~~~~l 182 (335)
T smart00129 117 KIDKLE-EGWQFQVKVSYLEIYNEKIRDLLNPS--PKKLEIREDKKGGVYVKGLTEISVSSFEEVYNLL 182 (335)
T ss_pred Hhhhcc-cCceEEEEEEEEEEECCEEEECcCCC--CCCcEEEECCCCCEEecCCEEEEeCCHHHHHHHH
Confidence 987554 35589999999999999999999976 4579999999999999999999999999998764
No 23
>KOG0240|consensus
Probab=100.00 E-value=3.3e-36 Score=247.61 Aligned_cols=138 Identities=44% Similarity=0.746 Sum_probs=127.3
Q ss_pred CeEEEeceEeccCCCCCCCCCCHHHHHHHHhHHHHHHhhcCCCeeEEeeccCCCCCceeeccCCC---CCCcHHHHHHHH
Q psy12524 3 PKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYTMMGSQD---NKGIIPRLCDSL 79 (151)
Q Consensus 3 ~k~f~fD~vf~~~d~~~~~~~~q~~vy~~~~~~lv~~~~~G~~~~v~~yG~~~sGKt~t~~G~~~---~~Gli~~~~~~l 79 (151)
.++|.||+|| .++++|++||+.++.|+|++|+.|||+||||||+|+|||||||.|... ..||+||++++|
T Consensus 48 ~~~y~FDrVF-------~pnatQe~Vy~~~a~~Iv~dVL~GYNGTvfaYGqT~sGKTytm~G~~~d~~~~GIipRi~~di 120 (607)
T KOG0240|consen 48 TKTYVFDRVF-------SPNATQEDVYEFAAKPIVDDVLLGYNGTVFAYGQTGSGKTYTMEGIGHDPEEMGIIPRILNDI 120 (607)
T ss_pred cccceeeeec-------CCCccHHHHHHHHHHHHHHHHhcccceeEEEecCCCCCcceeecccCCChhhcCcHHHHHHHH
Confidence 3789999999 899999999999999999999999999999999999999999999765 569999999999
Q ss_pred HHHHHhhcCCCceEEEEEEEEEEECCeeeecCCCCCCCceeeEEecCCCCeEEcCceEEEcCCHHHHhcCC
Q psy12524 80 FDLIAKQESSELTYKVEVSYMEIYNEKVHDLLDPKANKQSLKVREHNVLGPYVDGLSQLAVTSFQARANPT 150 (151)
Q Consensus 80 f~~~~~~~~~~~~~~v~~S~~eiy~e~v~DLL~~~~~~~~l~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll 150 (151)
|..+... ..+..|.|+|||+|||+|+|+|||++. +.+|++.+|...+++|+|+++..|.+++++++.+
T Consensus 121 F~~Iys~-~~n~efhVkVsy~EIYmEKi~DLL~~~--k~nlsvheDK~~v~~vkG~t~~~v~s~d~v~~~i 188 (607)
T KOG0240|consen 121 FDHIYSM-EENLEFHVKVSYFEIYMEKIRDLLDPE--KTNLSVHEDKNRVPYVKGVTERFVSSPDEVLDVI 188 (607)
T ss_pred HHHHhcC-cccceEEEEEEeehhhhhHHHHHhCcc--cCCceeecccCCCceecCceeEEecCHHHHHHHH
Confidence 9999855 455799999999999999999999975 5589999999999999999999999999998653
No 24
>KOG0239|consensus
Probab=100.00 E-value=3.1e-35 Score=251.40 Aligned_cols=137 Identities=39% Similarity=0.644 Sum_probs=129.1
Q ss_pred EEEeceEeccCCCCCCCCCCHHHHHHHHhHHHHHHhhcCCCeeEEeeccCCCCCceeecc-CCCCCCcHHHHHHHHHHHH
Q psy12524 5 TFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYTMMG-SQDNKGIIPRLCDSLFDLI 83 (151)
Q Consensus 5 ~f~fD~vf~~~d~~~~~~~~q~~vy~~~~~~lv~~~~~G~~~~v~~yG~~~sGKt~t~~G-~~~~~Gli~~~~~~lf~~~ 83 (151)
.|.||+|| ++.++|++||..+ .|+|.++++|||.|+||||+|||||||||.| .+.++||+||+++.||..+
T Consensus 361 ~f~fdkVf-------~p~~sQ~~VF~e~-~~lv~S~lDGYnVCIFAYGQTGSGKTyTM~G~~~~~~Giipral~~lF~~~ 432 (670)
T KOG0239|consen 361 SFKFDKVF-------GPLASQDDVFEEV-SPLVQSALDGYNVCIFAYGQTGSGKTYTMSGPTPEDPGIIPRALEKLFRTI 432 (670)
T ss_pred cceeeeec-------CCcccHHHHHHHH-HHHHHHHhcCcceeEEEecccCCCccccccCCCcccCCccHHHHHHHHHHH
Confidence 59999999 8999999999988 8999999999999999999999999999999 6889999999999999999
Q ss_pred HhhcCCCceEEEEEEEEEEECCeeeecCCCCCCCceeeEEecCCCCeEEcCceEEEcCCHHHHhcCC
Q psy12524 84 AKQESSELTYKVEVSYMEIYNEKVHDLLDPKANKQSLKVREHNVLGPYVDGLSQLAVTSFQARANPT 150 (151)
Q Consensus 84 ~~~~~~~~~~~v~~S~~eiy~e~v~DLL~~~~~~~~l~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll 150 (151)
..... +|.|.+.+||+|||||.|+|||++.....++.|++++.++.+|.|++.+.|.+.+++..||
T Consensus 433 ~~~~~-g~~y~~~~s~~EIYNe~i~DlL~~~~~~~k~~I~~~~~~~~~V~~~t~~~V~s~~~v~~ll 498 (670)
T KOG0239|consen 433 TSLKS-GWKYDKTVSMLEIYNEAIRDLLSDESYVGKLEIVDDAEGNLMVPLLTVIKVGSSEEVDILL 498 (670)
T ss_pred Hhhcc-CceEEeeeehhHHHHHHHHHhccccccccceeEEEcCCCceecccceEEecCCHHHHHHHH
Confidence 98876 9999999999999999999999876445689999999999999999999999999998765
No 25
>KOG0246|consensus
Probab=99.97 E-value=1.1e-31 Score=220.98 Aligned_cols=137 Identities=36% Similarity=0.528 Sum_probs=127.4
Q ss_pred eEEEeceEeccCCCCCCCCCCHHHHHHHHhHHHHHHhhcCCCeeEEeeccCCCCCceeeccCCC------CCCcHHHHHH
Q psy12524 4 KTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYTMMGSQD------NKGIIPRLCD 77 (151)
Q Consensus 4 k~f~fD~vf~~~d~~~~~~~~q~~vy~~~~~~lv~~~~~G~~~~v~~yG~~~sGKt~t~~G~~~------~~Gli~~~~~ 77 (151)
.+|.||++| ++.++++.||+.++.|+|+.+|+|--+|+||||+|||||||||.|+.+ ..||..++.+
T Consensus 258 ~~F~FDyaF-------De~~sNe~VYrfTa~PlV~~IF~~G~ATCFAYGQTGSGKT~TMggdfsgk~q~~s~giya~aa~ 330 (676)
T KOG0246|consen 258 QKFRFDYAF-------DESASNELVYRFTAKPLVKTIFEGGMATCFAYGQTGSGKTYTMGGDFSGKAQDCSKGIYALAAR 330 (676)
T ss_pred ceEEEeeec-------ccccchHHHHHHhhhHHHHHHHhCCceeeeeeccCCCCceeecccccCcccccccccchhhhhh
Confidence 579999999 889999999999999999999999999999999999999999999753 4799999999
Q ss_pred HHHHHHHhhcCCCceEEEEEEEEEEECCeeeecCCCCCCCceeeEEecCCCCeEEcCceEEEcCCHHHHhcCC
Q psy12524 78 SLFDLIAKQESSELTYKVEVSYMEIYNEKVHDLLDPKANKQSLKVREHNVLGPYVDGLSQLAVTSFQARANPT 150 (151)
Q Consensus 78 ~lf~~~~~~~~~~~~~~v~~S~~eiy~e~v~DLL~~~~~~~~l~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll 150 (151)
++|..+....-.+..+.|.+||+|||+.++||||+. +.+|.++||.+..+.|-||+|..|.+.+++++|.
T Consensus 331 Dvf~~L~~p~Y~~~~l~v~~tFFEIYgGKvfDLL~~---k~KLrvLEDg~QQVqVVGLqE~~v~~~eeVl~lI 400 (676)
T KOG0246|consen 331 DVFRLLRQPTYRKLDLKVYVTFFEIYGGKVYDLLND---KKKLRVLEDGNQQVQVVGLQEEEVSGVEEVLELI 400 (676)
T ss_pred HHHHHhcccchhhcceEEEEEEEEEeCcchhhhhcc---ccceEEeecCCceEEEeeceeeeccCHHHHHHHH
Confidence 999999877667778999999999999999999994 5689999999999999999999999999998864
No 26
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=99.97 E-value=1.5e-30 Score=220.56 Aligned_cols=138 Identities=41% Similarity=0.697 Sum_probs=128.9
Q ss_pred CeEEEeceEeccCCCCCCCCCCHHHHHHHHhHHHHHHhhcCCCeeEEeeccCCCCCceeeccCCCCCCcHHHHHHHHHHH
Q psy12524 3 PKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYTMMGSQDNKGIIPRLCDSLFDL 82 (151)
Q Consensus 3 ~k~f~fD~vf~~~d~~~~~~~~q~~vy~~~~~~lv~~~~~G~~~~v~~yG~~~sGKt~t~~G~~~~~Gli~~~~~~lf~~ 82 (151)
+.+|.||+|| ++.++|++||+..+.|+++.++.|+|||+||||+|||||||||.|...++||+|+++++||+.
T Consensus 55 ~~~~~fdkvf-------~~~~~q~~v~e~~~~~l~~~~l~g~N~TvfayGqTgsgKtyt~~G~~~~~Gii~~~l~~lf~~ 127 (568)
T COG5059 55 EGTYAFDKVF-------GPSATQEDVYEETIKPLIDSLLLGYNCTVFAYGQTGSGKTYTMSGTEEEPGIIPLSLKELFSK 127 (568)
T ss_pred ceEEEEeecc-------CCCCcHHHHHHHhhhhHHHHHHhcccceEEEEcccCCCceeEeecCccccchHHHHHHHHHHH
Confidence 5679999999 899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCceEEEEEEEEEEECCeeeecCCCCCCCceeeEEecCCCCeEEcCceEEEcCCHHHHhcCC
Q psy12524 83 IAKQESSELTYKVEVSYMEIYNEKVHDLLDPKANKQSLKVREHNVLGPYVDGLSQLAVTSFQARANPT 150 (151)
Q Consensus 83 ~~~~~~~~~~~~v~~S~~eiy~e~v~DLL~~~~~~~~l~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll 150 (151)
++.... +..+.+.+||+|||||+++|||.+... .+.++++...++++.|+++..+.+.++++.+|
T Consensus 128 l~~~~~-~~~~~v~is~lEiYnEk~~DLl~~~~~--~~~~~~~~~~~v~v~~l~~~~~~s~ee~l~~l 192 (568)
T COG5059 128 LEDLSM-TKDFAVSISYLEIYNEKIYDLLSPNEE--SLNIREDSLLGVKVAGLTEKHVSSKEEILDLL 192 (568)
T ss_pred HHhccc-CcceeeEeehhHHHhhHHHhhccCccc--cccccccCCCceEeecceEEecCChHHHHHHH
Confidence 987654 568999999999999999999997644 38899999999999999999999999998765
No 27
>KOG0247|consensus
Probab=99.97 E-value=7.2e-31 Score=221.01 Aligned_cols=141 Identities=36% Similarity=0.599 Sum_probs=124.9
Q ss_pred CeEEEeceEeccCCCCCCCCCCHHHHHHHHhHHHHHHhhcCCCeeEEeeccCCCCCceeeccCCCCCCcHHHHHHHHHHH
Q psy12524 3 PKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYTMMGSQDNKGIIPRLCDSLFDL 82 (151)
Q Consensus 3 ~k~f~fD~vf~~~d~~~~~~~~q~~vy~~~~~~lv~~~~~G~~~~v~~yG~~~sGKt~t~~G~~~~~Gli~~~~~~lf~~ 82 (151)
.+.|.|.+|| +++++|.+||+.++.|+|.+++.|.|..+|+||.|||||||||.|++..+||+||++.-||..
T Consensus 80 e~~fsFt~VF-------~p~~tQ~dvF~~~~~plV~dlLkgqn~LlFTyGVTgSGKTYTm~G~~~~~GIlPR~Ld~iF~s 152 (809)
T KOG0247|consen 80 EKKFSFTKVF-------GPSVTQADVFDTTVAPLVKDLLKGQNSLLFTYGVTGSGKTYTMTGTPDRPGILPRALDVIFNS 152 (809)
T ss_pred eeEeeeeeec-------CCCccHHHHHHHHhHHHHHHHHcccceeEEEeeccCCCceEEeecCCCCCCchHHHHHHHHHH
Confidence 5789999999 999999999999999999999999999999999999999999999999999999999999966
Q ss_pred HHhh---------------------------------------------------------c------CCCceEEEEEEE
Q psy12524 83 IAKQ---------------------------------------------------------E------SSELTYKVEVSY 99 (151)
Q Consensus 83 ~~~~---------------------------------------------------------~------~~~~~~~v~~S~ 99 (151)
+... . ..+..|.|+|||
T Consensus 153 iq~~~~~k~~~kp~~s~~~e~~~~~~alL~lkr~~~~nd~~~ts~~~~~~~~e~~e~~~~~e~~~~~l~~d~~ysV~VSf 232 (809)
T KOG0247|consen 153 IQGRQAKKPVFKPLRSNLFEIKAEEDALLQLKREAMLNDRKSTSKAHRQSTPEYAEHIHVIEQPALELDEDIVYSVFVSF 232 (809)
T ss_pred hhceeccCceeccccchHHHHHHHHHHHHhhhhhhccccccCcchhhccccHHHHhhcchhcccccccCcCcEEEEEeeH
Confidence 6320 0 134468999999
Q ss_pred EEEECCeeeecCCCCCC---Cce-eeEEecCCCCeEEcCceEEEcCCHHHHhcCC
Q psy12524 100 MEIYNEKVHDLLDPKAN---KQS-LKVREHNVLGPYVDGLSQLAVTSFQARANPT 150 (151)
Q Consensus 100 ~eiy~e~v~DLL~~~~~---~~~-l~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll 150 (151)
+|||||-|||||.+... ++. ..+++|.++..||+|++||.|.|.+|+.+|+
T Consensus 233 ~EIYN~~iYDLLe~~s~q~~~~~~~ll~~d~~~~~~Vkgl~~V~VssseEA~~l~ 287 (809)
T KOG0247|consen 233 VEIYNNYIYDLLEDASFQGKLQKLKLLREDTNGNMYVKGLTEVEVSSSEEALELF 287 (809)
T ss_pred HHHHHHHHHHhhccccccchhhhhhhhhhccCCCeeeccccEEEeccHHHHHHHH
Confidence 99999999999986421 223 6789999999999999999999999999875
No 28
>KOG0244|consensus
Probab=99.93 E-value=2e-26 Score=198.43 Aligned_cols=138 Identities=39% Similarity=0.656 Sum_probs=124.4
Q ss_pred CCeEEEeceEeccCCCCCCCCCCHHHHHHHHhHHHHHHhhcCCCeeEEeeccCCCCCceeeccC----CCCCCcHHHHHH
Q psy12524 2 PPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYTMMGS----QDNKGIIPRLCD 77 (151)
Q Consensus 2 ~~k~f~fD~vf~~~d~~~~~~~~q~~vy~~~~~~lv~~~~~G~~~~v~~yG~~~sGKt~t~~G~----~~~~Gli~~~~~ 77 (151)
..++|+||+|| .....|.++|+.++.|+++.++.|+|++++|||+|||||||||.++ ....|++||+++
T Consensus 30 ~~~s~t~d~v~-------~~~~~Q~~~~e~~V~~l~~~lf~gynatvlaygQtgsgkTytmgt~~~~~~~~~Gvipr~v~ 102 (913)
T KOG0244|consen 30 KDASFTYDKVF-------LDLESQKEVYESCVRPLREKLFAGYNATVLAYGQTGSGKTYTMGTNDAPAQDTVGVIPRAVS 102 (913)
T ss_pred CCcceeeeeec-------cCchHHHHHHHHHHHHHHHHHhhhhcceeeeecccCCCceeecccccccccccCCcCcchHH
Confidence 35789999999 6677899999999999999999999999999999999999999887 234699999999
Q ss_pred HHHHHHHhhcCCCceEEEEEEEEEEECCeeeecCCCCCCCceeeEEecCCCCeEEcCceEEEcCCHHHHhcC
Q psy12524 78 SLFDLIAKQESSELTYKVEVSYMEIYNEKVHDLLDPKANKQSLKVREHNVLGPYVDGLSQLAVTSFQARANP 149 (151)
Q Consensus 78 ~lf~~~~~~~~~~~~~~v~~S~~eiy~e~v~DLL~~~~~~~~l~i~e~~~~g~~v~gl~~~~v~s~~e~~~l 149 (151)
.+|..+..... ..|.|.+||+|+|++.|+|||.|.+.+..+++++ +.+++.+.|+++..|.+..++.+-
T Consensus 103 ~~f~~i~~~~~--~~f~i~vs~vely~e~v~dl~~~~~~~~~i~~~e-~~g~it~~glte~tv~~~~q~~~~ 171 (913)
T KOG0244|consen 103 TLFTRIGKTES--FVFRITVSFVELYNEEVLDLLKPSRLKANIKLRE-PKGEITIRGLTEKTVRMKLQLLSR 171 (913)
T ss_pred HHHHHHHhhhc--cceeeeeeeeeccchhhhhhcChhhhhhceeccc-cCCceEEEeehHHHHHHHHHHHHH
Confidence 99999987664 4789999999999999999999877777899999 888899999999999999887653
No 29
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=99.58 E-value=1.7e-14 Score=107.05 Aligned_cols=57 Identities=56% Similarity=1.056 Sum_probs=53.8
Q ss_pred HHHHHhHHHHHHhhcCCCeeEEeeccCCCCCceeeccCCCCCCcHHHHHHHHHHHHHh
Q psy12524 28 VFDALGRDILDNAFQGYNACIFAYGQTGSGKSYTMMGSQDNKGIIPRLCDSLFDLIAK 85 (151)
Q Consensus 28 vy~~~~~~lv~~~~~G~~~~v~~yG~~~sGKt~t~~G~~~~~Gli~~~~~~lf~~~~~ 85 (151)
||+.+. |+|+.+++|+|+||++||++||||||||+|+..++||+|++++++.+.++.
T Consensus 8 vf~~~~-~~v~~~~~G~n~~i~~yG~tGsGKT~Tm~G~~~~~Giip~~~~~~~~ll~~ 64 (186)
T cd01363 8 VFRDVG-PLLQSALDGYNVCIFAYGQTGSGKTYTMEGKREGAGIIPRTVTDVIDLMDK 64 (186)
T ss_pred HHHHHH-HHHHHHhCCcceeEEEECCCCCcceEecCCCCCCCCcchHHHHHHHHHHhh
Confidence 999998 999999999999999999999999999999999999999999988777654
No 30
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=96.07 E-value=0.0021 Score=48.78 Aligned_cols=50 Identities=30% Similarity=0.507 Sum_probs=29.2
Q ss_pred EEEeceEeccCCCCCCCCCCHHHHHHHHhHHHHHHhhcCCCeeEEeeccCCCCCceeecc
Q psy12524 5 TFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYTMMG 64 (151)
Q Consensus 5 ~f~fD~vf~~~d~~~~~~~~q~~vy~~~~~~lv~~~~~G~~~~v~~yG~~~sGKt~t~~G 64 (151)
+||||.-. ...+++..+..+ ..+.+.--..++ .++.||.+|+||||.+.+
T Consensus 4 ~~tFdnfv--------~g~~N~~a~~~~-~~ia~~~~~~~~-~l~l~G~~G~GKTHLL~A 53 (219)
T PF00308_consen 4 KYTFDNFV--------VGESNELAYAAA-KAIAENPGERYN-PLFLYGPSGLGKTHLLQA 53 (219)
T ss_dssp T-SCCCS----------TTTTHHHHHHH-HHHHHSTTTSSS-EEEEEESTTSSHHHHHHH
T ss_pred CCccccCC--------cCCcHHHHHHHH-HHHHhcCCCCCC-ceEEECCCCCCHHHHHHH
Confidence 46666654 334566777554 334433111233 478999999999998843
No 31
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=95.60 E-value=0.03 Score=47.87 Aligned_cols=82 Identities=21% Similarity=0.286 Sum_probs=50.9
Q ss_pred CCCCCHHHHHHHHhHHHHHHhhcCCCeeEEeeccCCCCCceeecc---CCCCCCcHH----HHHHHHHHHHHhhcCCCce
Q psy12524 20 PNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYTMMG---SQDNKGIIP----RLCDSLFDLIAKQESSELT 92 (151)
Q Consensus 20 ~~~~~q~~vy~~~~~~lv~~~~~G~~~~v~~yG~~~sGKt~t~~G---~~~~~Gli~----~~~~~lf~~~~~~~~~~~~ 92 (151)
.|.-+|.. .+..|++.+-.|...- ...|.|||||||||-. .-.-|.|+- -.+.+||+.....- .+..
T Consensus 12 ~PaGDQP~----AI~~Lv~gi~~g~~~Q-tLLGvTGSGKTfT~AnVI~~~~rPtLV~AhNKTLAaQLy~Efk~fF-P~Na 85 (663)
T COG0556 12 KPAGDQPE----AIAELVEGIENGLKHQ-TLLGVTGSGKTFTMANVIAKVQRPTLVLAHNKTLAAQLYSEFKEFF-PENA 85 (663)
T ss_pred CCCCCcHH----HHHHHHHHHhcCceee-EEeeeccCCchhHHHHHHHHhCCCeEEEecchhHHHHHHHHHHHhC-cCcc
Confidence 56666653 3466777777666543 4579999999999943 111222221 13456676666543 3335
Q ss_pred EEEEEEEEEEECCee
Q psy12524 93 YKVEVSYMEIYNEKV 107 (151)
Q Consensus 93 ~~v~~S~~eiy~e~v 107 (151)
+.-.+||+..|+-..
T Consensus 86 VEYFVSYYDYYQPEA 100 (663)
T COG0556 86 VEYFVSYYDYYQPEA 100 (663)
T ss_pred eEEEeeeccccCccc
Confidence 667789999997654
No 32
>PRK06620 hypothetical protein; Validated
Probab=94.92 E-value=0.017 Score=43.75 Aligned_cols=50 Identities=18% Similarity=0.276 Sum_probs=31.4
Q ss_pred eEEEeceEeccCCCCCCCCCCHHHHHHHHhHHHHHHhhcCCC---eeEEeeccCCCCCceeecc
Q psy12524 4 KTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYN---ACIFAYGQTGSGKSYTMMG 64 (151)
Q Consensus 4 k~f~fD~vf~~~d~~~~~~~~q~~vy~~~~~~lv~~~~~G~~---~~v~~yG~~~sGKt~t~~G 64 (151)
..|+||.-. ...++...|.... .+.+. -|.+ -.++-||++|+||||.+..
T Consensus 11 ~~~tfd~Fv--------vg~~N~~a~~~~~-~~~~~--~~~~~~~~~l~l~Gp~G~GKThLl~a 63 (214)
T PRK06620 11 SKYHPDEFI--------VSSSNDQAYNIIK-NWQCG--FGVNPYKFTLLIKGPSSSGKTYLTKI 63 (214)
T ss_pred CCCCchhhE--------ecccHHHHHHHHH-HHHHc--cccCCCcceEEEECCCCCCHHHHHHH
Confidence 346666555 3344666776653 33331 1232 3589999999999999964
No 33
>PRK06893 DNA replication initiation factor; Validated
Probab=94.62 E-value=0.03 Score=42.66 Aligned_cols=23 Identities=22% Similarity=0.336 Sum_probs=19.4
Q ss_pred cCCCeeEEeeccCCCCCceeecc
Q psy12524 42 QGYNACIFAYGQTGSGKSYTMMG 64 (151)
Q Consensus 42 ~G~~~~v~~yG~~~sGKt~t~~G 64 (151)
...+..++.||.+|+||||.+..
T Consensus 36 ~~~~~~l~l~G~~G~GKThL~~a 58 (229)
T PRK06893 36 DLQQPFFYIWGGKSSGKSHLLKA 58 (229)
T ss_pred ccCCCeEEEECCCCCCHHHHHHH
Confidence 45677789999999999999954
No 34
>PRK09087 hypothetical protein; Validated
Probab=94.31 E-value=0.032 Score=42.62 Aligned_cols=20 Identities=25% Similarity=0.292 Sum_probs=17.0
Q ss_pred CeeEEeeccCCCCCceeecc
Q psy12524 45 NACIFAYGQTGSGKSYTMMG 64 (151)
Q Consensus 45 ~~~v~~yG~~~sGKt~t~~G 64 (151)
+..++-||.+||||||.+..
T Consensus 44 ~~~l~l~G~~GsGKThLl~~ 63 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASI 63 (226)
T ss_pred CCeEEEECCCCCCHHHHHHH
Confidence 44589999999999999954
No 35
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=93.49 E-value=0.04 Score=47.98 Aligned_cols=39 Identities=26% Similarity=0.477 Sum_probs=25.1
Q ss_pred CHHHHHHHHhHHHHHHhhcCCCeeEEeeccCCCCCceeecc
Q psy12524 24 SQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYTMMG 64 (151)
Q Consensus 24 ~q~~vy~~~~~~lv~~~~~G~~~~v~~yG~~~sGKt~t~~G 64 (151)
++...|... ..+++..-..+|. ++.||.+|+||||.+..
T Consensus 295 sN~~A~aaa-~avae~~~~~~Np-L~LyG~sGsGKTHLL~A 333 (617)
T PRK14086 295 SNRFAHAAA-VAVAEAPAKAYNP-LFIYGESGLGKTHLLHA 333 (617)
T ss_pred ccHHHHHHH-HHHHhCccccCCc-EEEECCCCCCHHHHHHH
Confidence 345555444 3444432234554 89999999999999854
No 36
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=93.48 E-value=0.24 Score=40.58 Aligned_cols=37 Identities=27% Similarity=0.352 Sum_probs=24.3
Q ss_pred HHHHHHHhHHHHHHhhcCCCeeEEeeccCCCCCceee
Q psy12524 26 EKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 26 ~~vy~~~~~~lv~~~~~G~~~~v~~yG~~~sGKt~t~ 62 (151)
++-++....-+...+..+...+++.||.+|||||.++
T Consensus 23 e~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~ 59 (366)
T COG1474 23 EEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATV 59 (366)
T ss_pred HHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHH
Confidence 3344455433333333455666999999999999887
No 37
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=93.14 E-value=0.05 Score=43.60 Aligned_cols=30 Identities=33% Similarity=0.362 Sum_probs=27.2
Q ss_pred hHHHHHHhhcCCCeeEEeeccCCCCCceee
Q psy12524 33 GRDILDNAFQGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 33 ~~~lv~~~~~G~~~~v~~yG~~~sGKt~t~ 62 (151)
+.|++..+..--++.|++-|+|||||+.|+
T Consensus 113 lP~i~~~~~~~~~GLILVTGpTGSGKSTTl 142 (353)
T COG2805 113 LPPIVRELAESPRGLILVTGPTGSGKSTTL 142 (353)
T ss_pred CCHHHHHHHhCCCceEEEeCCCCCcHHHHH
Confidence 467888888889999999999999999999
No 38
>PRK08084 DNA replication initiation factor; Provisional
Probab=93.06 E-value=0.081 Score=40.47 Aligned_cols=19 Identities=21% Similarity=0.553 Sum_probs=16.6
Q ss_pred eeEEeeccCCCCCceeecc
Q psy12524 46 ACIFAYGQTGSGKSYTMMG 64 (151)
Q Consensus 46 ~~v~~yG~~~sGKt~t~~G 64 (151)
..++.||++|+||||.+..
T Consensus 46 ~~l~l~Gp~G~GKThLl~a 64 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHA 64 (235)
T ss_pred CeEEEECCCCCCHHHHHHH
Confidence 4789999999999999943
No 39
>PRK12377 putative replication protein; Provisional
Probab=92.87 E-value=0.14 Score=39.74 Aligned_cols=40 Identities=20% Similarity=0.324 Sum_probs=27.9
Q ss_pred CCHHHHHHHHhHHHHHHhhcCCCeeEEeeccCCCCCceeecc
Q psy12524 23 ASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYTMMG 64 (151)
Q Consensus 23 ~~q~~vy~~~~~~lv~~~~~G~~~~v~~yG~~~sGKt~t~~G 64 (151)
..|..++..+ ..+++.+..+. ..++.+|.+|+||||.+..
T Consensus 81 ~~~~~a~~~a-~~~a~~~~~~~-~~l~l~G~~GtGKThLa~A 120 (248)
T PRK12377 81 DGQRYALSQA-KSIADELMTGC-TNFVFSGKPGTGKNHLAAA 120 (248)
T ss_pred hhHHHHHHHH-HHHHHHHHhcC-CeEEEECCCCCCHHHHHHH
Confidence 3455566544 55666665543 4688999999999999944
No 40
>PRK08181 transposase; Validated
Probab=92.70 E-value=0.087 Score=41.39 Aligned_cols=18 Identities=28% Similarity=0.519 Sum_probs=16.1
Q ss_pred eEEeeccCCCCCceeecc
Q psy12524 47 CIFAYGQTGSGKSYTMMG 64 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~~G 64 (151)
.++.+|++|+||||.+.+
T Consensus 108 nlll~Gp~GtGKTHLa~A 125 (269)
T PRK08181 108 NLLLFGPPGGGKSHLAAA 125 (269)
T ss_pred eEEEEecCCCcHHHHHHH
Confidence 489999999999999965
No 41
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=92.69 E-value=0.1 Score=42.06 Aligned_cols=39 Identities=23% Similarity=0.520 Sum_probs=26.8
Q ss_pred CCHHHHHHHHhHHHHHHhhc-CCCeeEEeeccCCCCCceee
Q psy12524 23 ASQEKVFDALGRDILDNAFQ-GYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 23 ~~q~~vy~~~~~~lv~~~~~-G~~~~v~~yG~~~sGKt~t~ 62 (151)
...++-.+.... .+..++. +...+++.||++|+|||.++
T Consensus 18 ~gRe~e~~~l~~-~l~~~~~~~~~~~i~I~G~~GtGKT~l~ 57 (365)
T TIGR02928 18 VHRDEQIEELAK-ALRPILRGSRPSNVFIYGKTGTGKTAVT 57 (365)
T ss_pred CCcHHHHHHHHH-HHHHHHcCCCCCcEEEECCCCCCHHHHH
Confidence 455555555543 3444444 45567899999999999988
No 42
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=92.68 E-value=0.12 Score=42.19 Aligned_cols=39 Identities=26% Similarity=0.451 Sum_probs=25.5
Q ss_pred CCHHHHHHHHhHHHHHHhhc-CCCeeEEeeccCCCCCceee
Q psy12524 23 ASQEKVFDALGRDILDNAFQ-GYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 23 ~~q~~vy~~~~~~lv~~~~~-G~~~~v~~yG~~~sGKt~t~ 62 (151)
...++-.+.... .+...+. +...+++.||++|+|||.++
T Consensus 33 ~~Re~e~~~l~~-~l~~~~~~~~~~~~lI~G~~GtGKT~l~ 72 (394)
T PRK00411 33 PHREEQIEELAF-ALRPALRGSRPLNVLIYGPPGTGKTTTV 72 (394)
T ss_pred CCHHHHHHHHHH-HHHHHhCCCCCCeEEEECCCCCCHHHHH
Confidence 344555555433 3344443 45567899999999999988
No 43
>PRK06526 transposase; Provisional
Probab=92.67 E-value=0.057 Score=42.03 Aligned_cols=49 Identities=14% Similarity=0.212 Sum_probs=28.4
Q ss_pred EeccCCCCCCCCCCHHHHHHHHhHHHHHHhhcCCCeeEEeeccCCCCCceeecc
Q psy12524 11 CFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYTMMG 64 (151)
Q Consensus 11 vf~~~d~~~~~~~~q~~vy~~~~~~lv~~~~~G~~~~v~~yG~~~sGKt~t~~G 64 (151)
.|.+||....+..++..+..-.....++ .+ ..++.+|++|+||||.+.+
T Consensus 69 ~le~fd~~~~~~~~~~~~~~l~~~~fi~---~~--~nlll~Gp~GtGKThLa~a 117 (254)
T PRK06526 69 SLEEFDFDHQRSLKRDTIAHLGTLDFVT---GK--ENVVFLGPPGTGKTHLAIG 117 (254)
T ss_pred ChhhccCccCCCcchHHHHHHhcCchhh---cC--ceEEEEeCCCCchHHHHHH
Confidence 3444444434444554444433233332 23 3579999999999999864
No 44
>PRK05642 DNA replication initiation factor; Validated
Probab=92.42 E-value=0.089 Score=40.24 Aligned_cols=19 Identities=26% Similarity=0.625 Sum_probs=16.3
Q ss_pred eeEEeeccCCCCCceeecc
Q psy12524 46 ACIFAYGQTGSGKSYTMMG 64 (151)
Q Consensus 46 ~~v~~yG~~~sGKt~t~~G 64 (151)
..++.||.+|+||||.+..
T Consensus 46 ~~l~l~G~~G~GKTHLl~a 64 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQA 64 (234)
T ss_pred CeEEEECCCCCCHHHHHHH
Confidence 4678999999999999854
No 45
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=92.41 E-value=0.1 Score=43.03 Aligned_cols=40 Identities=23% Similarity=0.297 Sum_probs=23.7
Q ss_pred CCHHHHHHHHhHHHHHHhhcCCCeeEEeeccCCCCCceeecc
Q psy12524 23 ASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYTMMG 64 (151)
Q Consensus 23 ~~q~~vy~~~~~~lv~~~~~G~~~~v~~yG~~~sGKt~t~~G 64 (151)
.++...|... ..+.+.- .+....++.||.+|+||||.+..
T Consensus 116 ~~n~~a~~~~-~~~~~~~-~~~~n~l~l~G~~G~GKThL~~a 155 (405)
T TIGR00362 116 KSNRLAHAAA-LAVAENP-GKAYNPLFIYGGVGLGKTHLLHA 155 (405)
T ss_pred CcHHHHHHHH-HHHHhCc-CccCCeEEEECCCCCcHHHHHHH
Confidence 3455555444 3333321 11122478999999999999843
No 46
>PRK08116 hypothetical protein; Validated
Probab=92.33 E-value=0.12 Score=40.42 Aligned_cols=42 Identities=21% Similarity=0.354 Sum_probs=28.1
Q ss_pred CCCHHHHHHHHhHHHHHHhhc--CCCeeEEeeccCCCCCceeecc
Q psy12524 22 FASQEKVFDALGRDILDNAFQ--GYNACIFAYGQTGSGKSYTMMG 64 (151)
Q Consensus 22 ~~~q~~vy~~~~~~lv~~~~~--G~~~~v~~yG~~~sGKt~t~~G 64 (151)
+..+...+..+ ...++.+.. ..+..++.||.+|+||||.+..
T Consensus 90 ~~~~~~a~~~a-~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~a 133 (268)
T PRK08116 90 DKGSEKAYKIA-RKYVKKFEEMKKENVGLLLWGSVGTGKTYLAAC 133 (268)
T ss_pred ChHHHHHHHHH-HHHHHHHHhhccCCceEEEECCCCCCHHHHHHH
Confidence 34455566544 556666543 2344689999999999999843
No 47
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=92.33 E-value=0.12 Score=34.79 Aligned_cols=25 Identities=20% Similarity=0.286 Sum_probs=18.2
Q ss_pred HHhhcCCCeeEEeeccCCCCCceee
Q psy12524 38 DNAFQGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 38 ~~~~~G~~~~v~~yG~~~sGKt~t~ 62 (151)
..+.......++.+|.+|+|||+.+
T Consensus 12 ~~~~~~~~~~v~i~G~~G~GKT~l~ 36 (151)
T cd00009 12 EALELPPPKNLLLYGPPGTGKTTLA 36 (151)
T ss_pred HHHhCCCCCeEEEECCCCCCHHHHH
Confidence 3333334456889999999999877
No 48
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=92.12 E-value=0.11 Score=43.28 Aligned_cols=66 Identities=18% Similarity=0.263 Sum_probs=36.8
Q ss_pred EEEeceEeccCCCCCCCCCCHHHHHHHHhHHHHHHhhcCCCeeEEeeccCCCCCceeeccC-------CCCCCcHHHHHH
Q psy12524 5 TFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYTMMGS-------QDNKGIIPRLCD 77 (151)
Q Consensus 5 ~f~fD~vf~~~d~~~~~~~~q~~vy~~~~~~lv~~~~~G~~~~v~~yG~~~sGKt~t~~G~-------~~~~Gli~~~~~ 77 (151)
.|+||.-. ...++...|.... -+...-.+..--++.||.+|+||||.|... ..+..+++...+
T Consensus 83 ~ytFdnFv--------~g~~N~~A~aa~~--~va~~~g~~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se 152 (408)
T COG0593 83 KYTFDNFV--------VGPSNRLAYAAAK--AVAENPGGAYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSE 152 (408)
T ss_pred CCchhhee--------eCCchHHHHHHHH--HHHhccCCcCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHH
Confidence 45665544 4455555554442 222222222335899999999999999542 233455555555
Q ss_pred HHH
Q psy12524 78 SLF 80 (151)
Q Consensus 78 ~lf 80 (151)
..+
T Consensus 153 ~f~ 155 (408)
T COG0593 153 DFT 155 (408)
T ss_pred HHH
Confidence 443
No 49
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=92.07 E-value=0.1 Score=43.66 Aligned_cols=39 Identities=28% Similarity=0.431 Sum_probs=23.7
Q ss_pred CHHHHHHHHhHHHHHHhhcCCCeeEEeeccCCCCCceeecc
Q psy12524 24 SQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYTMMG 64 (151)
Q Consensus 24 ~q~~vy~~~~~~lv~~~~~G~~~~v~~yG~~~sGKt~t~~G 64 (151)
++...|..+ ..+.+.--..++ .++.||.+|+||||.+..
T Consensus 129 ~n~~a~~~~-~~~~~~~~~~~~-~l~l~G~~G~GKThL~~a 167 (450)
T PRK00149 129 SNRLAHAAA-LAVAENPGKAYN-PLFIYGGVGLGKTHLLHA 167 (450)
T ss_pred CcHHHHHHH-HHHHhCcCccCC-eEEEECCCCCCHHHHHHH
Confidence 455555544 333332111233 488999999999999843
No 50
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=91.59 E-value=0.13 Score=43.16 Aligned_cols=38 Identities=29% Similarity=0.539 Sum_probs=24.7
Q ss_pred CCHHHHHHHHhHHHHHHhhcC-CCeeEEeeccCCCCCceeecc
Q psy12524 23 ASQEKVFDALGRDILDNAFQG-YNACIFAYGQTGSGKSYTMMG 64 (151)
Q Consensus 23 ~~q~~vy~~~~~~lv~~~~~G-~~~~v~~yG~~~sGKt~t~~G 64 (151)
.++...|..+. .+.+. .| +| .++.||.+|+||||.+..
T Consensus 111 ~~n~~a~~~~~-~~~~~--~~~~n-~l~lyG~~G~GKTHLl~a 149 (440)
T PRK14088 111 PGNSFAYHAAL-EVAKN--PGRYN-PLFIYGGVGLGKTHLLQS 149 (440)
T ss_pred CchHHHHHHHH-HHHhC--cCCCC-eEEEEcCCCCcHHHHHHH
Confidence 44555665543 23322 23 45 499999999999999953
No 51
>PRK07952 DNA replication protein DnaC; Validated
Probab=91.34 E-value=0.21 Score=38.71 Aligned_cols=39 Identities=18% Similarity=0.241 Sum_probs=25.6
Q ss_pred CHHHHHHHHhHHHHHHhhcCCCeeEEeeccCCCCCceeecc
Q psy12524 24 SQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYTMMG 64 (151)
Q Consensus 24 ~q~~vy~~~~~~lv~~~~~G~~~~v~~yG~~~sGKt~t~~G 64 (151)
.|..++..+ ...++....+. ..++.+|.+|+||||.+..
T Consensus 80 ~q~~al~~a-~~~~~~~~~~~-~~~~l~G~~GtGKThLa~a 118 (244)
T PRK07952 80 GQMNALSKA-RQYVEEFDGNI-ASFIFSGKPGTGKNHLAAA 118 (244)
T ss_pred hHHHHHHHH-HHHHHhhccCC-ceEEEECCCCCCHHHHHHH
Confidence 445565554 34455543332 3688999999999999943
No 52
>PF13245 AAA_19: Part of AAA domain
Probab=91.16 E-value=0.11 Score=32.83 Aligned_cols=24 Identities=25% Similarity=0.400 Sum_probs=17.0
Q ss_pred HHhhcCCCeeEEeeccCCCCCceee
Q psy12524 38 DNAFQGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 38 ~~~~~G~~~~v~~yG~~~sGKt~t~ 62 (151)
...+. .+..++.-|..|||||+++
T Consensus 4 ~~al~-~~~~~vv~g~pGtGKT~~~ 27 (76)
T PF13245_consen 4 RRALA-GSPLFVVQGPPGTGKTTTL 27 (76)
T ss_pred HHHHh-hCCeEEEECCCCCCHHHHH
Confidence 33444 3344556899999999988
No 53
>PRK06835 DNA replication protein DnaC; Validated
Probab=90.86 E-value=0.3 Score=39.46 Aligned_cols=30 Identities=23% Similarity=0.499 Sum_probs=22.7
Q ss_pred HHHHHHhhcCCCeeEEeeccCCCCCceeecc
Q psy12524 34 RDILDNAFQGYNACIFAYGQTGSGKSYTMMG 64 (151)
Q Consensus 34 ~~lv~~~~~G~~~~v~~yG~~~sGKt~t~~G 64 (151)
...++.+-... ..++.||.+|+||||.+.+
T Consensus 173 ~~f~~~f~~~~-~~Lll~G~~GtGKThLa~a 202 (329)
T PRK06835 173 KNFIENFDKNN-ENLLFYGNTGTGKTFLSNC 202 (329)
T ss_pred HHHHHHHhccC-CcEEEECCCCCcHHHHHHH
Confidence 45666655433 5699999999999999844
No 54
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=90.22 E-value=0.24 Score=37.27 Aligned_cols=20 Identities=25% Similarity=0.585 Sum_probs=16.9
Q ss_pred CCeeEEeeccCCCCCceeec
Q psy12524 44 YNACIFAYGQTGSGKSYTMM 63 (151)
Q Consensus 44 ~~~~v~~yG~~~sGKt~t~~ 63 (151)
....++.+|.+|+||||.+.
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ 60 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQ 60 (227)
T ss_pred CCCeEEEECCCCCCHHHHHH
Confidence 34578999999999999883
No 55
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=90.12 E-value=0.19 Score=42.71 Aligned_cols=30 Identities=30% Similarity=0.352 Sum_probs=25.1
Q ss_pred HHHHHhhcCCCeeEEeeccCCCCCceeecc
Q psy12524 35 DILDNAFQGYNACIFAYGQTGSGKSYTMMG 64 (151)
Q Consensus 35 ~lv~~~~~G~~~~v~~yG~~~sGKt~t~~G 64 (151)
..+..++..-.+.++.-|+||||||.||+.
T Consensus 248 ~~~~~~~~~p~GliLvTGPTGSGKTTTLY~ 277 (500)
T COG2804 248 ARLLRLLNRPQGLILVTGPTGSGKTTTLYA 277 (500)
T ss_pred HHHHHHHhCCCeEEEEeCCCCCCHHHHHHH
Confidence 445667778889999999999999999953
No 56
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=90.02 E-value=0.24 Score=35.15 Aligned_cols=31 Identities=19% Similarity=0.277 Sum_probs=20.9
Q ss_pred HHHHHHhhcC-CCeeEEeeccCCCCCceeecc
Q psy12524 34 RDILDNAFQG-YNACIFAYGQTGSGKSYTMMG 64 (151)
Q Consensus 34 ~~lv~~~~~G-~~~~v~~yG~~~sGKt~t~~G 64 (151)
..+++.+-.. ....++..++||||||.++..
T Consensus 13 ~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~ 44 (184)
T PF04851_consen 13 ARIINSLENKKEERRVLLNAPTGSGKTIIALA 44 (184)
T ss_dssp HHHHHHHHTTSGCSEEEEEESTTSSHHHHHHH
T ss_pred HHHHHHHHhcCCCCCEEEEECCCCCcChhhhh
Confidence 3344443333 355677888999999999964
No 57
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=89.90 E-value=0.44 Score=37.09 Aligned_cols=26 Identities=31% Similarity=0.557 Sum_probs=20.9
Q ss_pred HHhhcCCCe-eEEeeccCCCCCceeec
Q psy12524 38 DNAFQGYNA-CIFAYGQTGSGKSYTMM 63 (151)
Q Consensus 38 ~~~~~G~~~-~v~~yG~~~sGKt~t~~ 63 (151)
..+++|..+ .++.||..|||||.++.
T Consensus 44 ~~Fl~G~pannvLL~G~rGtGKSSlVk 70 (249)
T PF05673_consen 44 EQFLQGLPANNVLLWGARGTGKSSLVK 70 (249)
T ss_pred HHHHcCCCCcceEEecCCCCCHHHHHH
Confidence 457777765 47889999999998884
No 58
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=89.35 E-value=0.28 Score=40.00 Aligned_cols=37 Identities=30% Similarity=0.464 Sum_probs=28.3
Q ss_pred CCCHHHHHHHHhHHHHHHhhcCCCeeEEeeccCCCCCceee
Q psy12524 22 FASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 22 ~~~q~~vy~~~~~~lv~~~~~G~~~~v~~yG~~~sGKt~t~ 62 (151)
+..|+.+|+.++..+. ......+|.-|..|||||+.+
T Consensus 3 n~eQ~~~~~~v~~~~~----~~~~~~~fv~G~~GtGKs~l~ 39 (364)
T PF05970_consen 3 NEEQRRVFDTVIEAIE----NEEGLNFFVTGPAGTGKSFLI 39 (364)
T ss_pred CHHHHHHHHHHHHHHH----ccCCcEEEEEcCCCCChhHHH
Confidence 3578999988865443 244556788999999999997
No 59
>KOG0989|consensus
Probab=89.33 E-value=0.34 Score=39.02 Aligned_cols=37 Identities=27% Similarity=0.319 Sum_probs=24.2
Q ss_pred HHHHHHHhHHHHHHhh-cCCCeeEEeeccCCCCCceee
Q psy12524 26 EKVFDALGRDILDNAF-QGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 26 ~~vy~~~~~~lv~~~~-~G~~~~v~~yG~~~sGKt~t~ 62 (151)
+.+++..+-..+...+ .+.-...+-||+.|||||.|.
T Consensus 37 e~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTSta 74 (346)
T KOG0989|consen 37 ELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTA 74 (346)
T ss_pred hhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHH
Confidence 4444444444444444 445556788999999999998
No 60
>PRK06921 hypothetical protein; Provisional
Probab=89.30 E-value=0.3 Score=38.20 Aligned_cols=31 Identities=23% Similarity=0.305 Sum_probs=21.6
Q ss_pred HHHHHHhhc---CCCeeEEeeccCCCCCceeecc
Q psy12524 34 RDILDNAFQ---GYNACIFAYGQTGSGKSYTMMG 64 (151)
Q Consensus 34 ~~lv~~~~~---G~~~~v~~yG~~~sGKt~t~~G 64 (151)
...++.+-. +....++.+|.+|+||||.+..
T Consensus 103 ~~~~~~f~~~~~~~~~~l~l~G~~G~GKThLa~a 136 (266)
T PRK06921 103 VEYVKDFEKIQESRKNSIALLGQPGSGKTHLLTA 136 (266)
T ss_pred HHHHHHHHHhcccCCCeEEEECCCCCcHHHHHHH
Confidence 345554432 2345689999999999999954
No 61
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=89.19 E-value=0.27 Score=41.43 Aligned_cols=40 Identities=33% Similarity=0.559 Sum_probs=24.1
Q ss_pred CCHHHHHHHHhHHHHHHhhcCCCeeEEeeccCCCCCceeecc
Q psy12524 23 ASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYTMMG 64 (151)
Q Consensus 23 ~~q~~vy~~~~~~lv~~~~~G~~~~v~~yG~~~sGKt~t~~G 64 (151)
.+++..|..+ ..+.+.--..+| .++.||.+|+||||.+..
T Consensus 121 ~~n~~A~~aa-~~~a~~~~~~~n-pl~i~G~~G~GKTHLl~A 160 (450)
T PRK14087 121 SSNEQAFIAV-QTVSKNPGISYN-PLFIYGESGMGKTHLLKA 160 (450)
T ss_pred CcHHHHHHHH-HHHHhCcCcccC-ceEEECCCCCcHHHHHHH
Confidence 3455566443 334322111123 488999999999999954
No 62
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=89.10 E-value=0.36 Score=40.58 Aligned_cols=39 Identities=26% Similarity=0.462 Sum_probs=23.9
Q ss_pred CCHHHHHHHHhHHHHHHh--hcC--CCeeEEeeccCCCCCceeec
Q psy12524 23 ASQEKVFDALGRDILDNA--FQG--YNACIFAYGQTGSGKSYTMM 63 (151)
Q Consensus 23 ~~q~~vy~~~~~~lv~~~--~~G--~~~~v~~yG~~~sGKt~t~~ 63 (151)
.+++..|..+ ..+.+.. ..| +| -++.||.+|+||||.+.
T Consensus 117 ~~N~~a~~~a-~~~a~~~~~~~~~~~n-pl~L~G~~G~GKTHLl~ 159 (445)
T PRK12422 117 PENDLPHRIL-QEFTKVSEQGKGFPFN-PIYLFGPEGSGKTHLMQ 159 (445)
T ss_pred CcHHHHHHHH-HHHHhccccccCCCCc-eEEEEcCCCCCHHHHHH
Confidence 4555555443 3443322 123 23 47889999999999984
No 63
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=89.08 E-value=0.41 Score=37.22 Aligned_cols=40 Identities=15% Similarity=0.229 Sum_probs=27.2
Q ss_pred CCCHHHHHHHHhHHHHHHhhcCCCeeEEeeccCCCCCceeecc
Q psy12524 22 FASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYTMMG 64 (151)
Q Consensus 22 ~~~q~~vy~~~~~~lv~~~~~G~~~~v~~yG~~~sGKt~t~~G 64 (151)
...+...+... ..+++.+- ....++.||++|+||||...+
T Consensus 85 ~~~~~~~l~~~-~~~~~~~~--~~~nl~l~G~~G~GKThLa~A 124 (254)
T COG1484 85 PGIDKKALEDL-ASLVEFFE--RGENLVLLGPPGVGKTHLAIA 124 (254)
T ss_pred cchhHHHHHHH-HHHHHHhc--cCCcEEEECCCCCcHHHHHHH
Confidence 33566666655 34555544 444578999999999999843
No 64
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=88.99 E-value=0.36 Score=36.05 Aligned_cols=22 Identities=27% Similarity=0.522 Sum_probs=18.6
Q ss_pred cCCCeeEEeeccCCCCCceeec
Q psy12524 42 QGYNACIFAYGQTGSGKSYTMM 63 (151)
Q Consensus 42 ~G~~~~v~~yG~~~sGKt~t~~ 63 (151)
......++.||.+|+|||+.+.
T Consensus 35 ~~~~~~lll~G~~G~GKT~la~ 56 (226)
T TIGR03420 35 GKGDRFLYLWGESGSGKSHLLQ 56 (226)
T ss_pred cCCCCeEEEECCCCCCHHHHHH
Confidence 4556689999999999999883
No 65
>PRK08939 primosomal protein DnaI; Reviewed
Probab=88.79 E-value=0.26 Score=39.44 Aligned_cols=40 Identities=28% Similarity=0.419 Sum_probs=27.3
Q ss_pred CHHHHHHHHhHHHHHHhhcC-CCeeEEeeccCCCCCceeecc
Q psy12524 24 SQEKVFDALGRDILDNAFQG-YNACIFAYGQTGSGKSYTMMG 64 (151)
Q Consensus 24 ~q~~vy~~~~~~lv~~~~~G-~~~~v~~yG~~~sGKt~t~~G 64 (151)
++..++..+ ...++....| ....++.||.+|+||||.+.+
T Consensus 135 ~~~~~~~~~-~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~A 175 (306)
T PRK08939 135 DRLDALMAA-LDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAA 175 (306)
T ss_pred HHHHHHHHH-HHHHHHhhccCCCCeEEEECCCCCCHHHHHHH
Confidence 455566543 5566655433 334689999999999999954
No 66
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=88.62 E-value=0.35 Score=35.52 Aligned_cols=20 Identities=25% Similarity=0.516 Sum_probs=15.9
Q ss_pred CCeeEEeeccCCCCCceeec
Q psy12524 44 YNACIFAYGQTGSGKSYTMM 63 (151)
Q Consensus 44 ~~~~v~~yG~~~sGKt~t~~ 63 (151)
..-.++.+|.+|+||||...
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ 65 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAV 65 (178)
T ss_dssp C--EEEEEESTTSSHHHHHH
T ss_pred cCeEEEEEhhHhHHHHHHHH
Confidence 34568999999999999984
No 67
>PRK08727 hypothetical protein; Validated
Probab=88.12 E-value=0.4 Score=36.57 Aligned_cols=19 Identities=21% Similarity=0.509 Sum_probs=16.4
Q ss_pred eeEEeeccCCCCCceeecc
Q psy12524 46 ACIFAYGQTGSGKSYTMMG 64 (151)
Q Consensus 46 ~~v~~yG~~~sGKt~t~~G 64 (151)
..++.||.+|+||||.+..
T Consensus 42 ~~l~l~G~~G~GKThL~~a 60 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALA 60 (233)
T ss_pred CeEEEECCCCCCHHHHHHH
Confidence 4589999999999999854
No 68
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=87.52 E-value=0.29 Score=36.11 Aligned_cols=29 Identities=28% Similarity=0.415 Sum_probs=20.4
Q ss_pred HHHHHhhcCCCeeEEeeccCCCCCceeec
Q psy12524 35 DILDNAFQGYNACIFAYGQTGSGKSYTMM 63 (151)
Q Consensus 35 ~lv~~~~~G~~~~v~~yG~~~sGKt~t~~ 63 (151)
.+.+.+..|.+..++.||+.|+|||..+.
T Consensus 10 ~l~~~l~~~~~~~~~l~G~rg~GKTsLl~ 38 (234)
T PF01637_consen 10 KLKELLESGPSQHILLYGPRGSGKTSLLK 38 (234)
T ss_dssp HHHHCHHH--SSEEEEEESTTSSHHHHHH
T ss_pred HHHHHHHhhcCcEEEEEcCCcCCHHHHHH
Confidence 33333344667889999999999999883
No 69
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=87.41 E-value=0.6 Score=35.78 Aligned_cols=47 Identities=15% Similarity=0.306 Sum_probs=27.3
Q ss_pred CCCCCCCCHHHHHHHHhH----HHHHHhhcCCCeeEEeeccCCCCCceeec
Q psy12524 17 PNLPNFASQEKVFDALGR----DILDNAFQGYNACIFAYGQTGSGKSYTMM 63 (151)
Q Consensus 17 ~~~~~~~~q~~vy~~~~~----~lv~~~~~G~~~~v~~yG~~~sGKt~t~~ 63 (151)
.+|........+|..... ..++..+......++.+|.+|+|||..+.
T Consensus 11 ~pF~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~ 61 (269)
T TIGR03015 11 KPFQLLPDPDFFYPSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIR 61 (269)
T ss_pred CCCCCCCCHHHhCCCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHH
Confidence 344555555555543331 12222333335568889999999998873
No 70
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=87.13 E-value=0.19 Score=34.08 Aligned_cols=18 Identities=28% Similarity=0.466 Sum_probs=13.1
Q ss_pred CeeEEeeccCCCCCceee
Q psy12524 45 NACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 45 ~~~v~~yG~~~sGKt~t~ 62 (151)
..+++.+|.+|+|||.++
T Consensus 4 ~~~~~i~G~~G~GKT~~~ 21 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLI 21 (131)
T ss_dssp ---EEEEE-TTSSHHHHH
T ss_pred CcccEEEcCCCCCHHHHH
Confidence 346889999999999988
No 71
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=86.63 E-value=0.26 Score=32.72 Aligned_cols=18 Identities=33% Similarity=0.466 Sum_probs=15.4
Q ss_pred eeEEeeccCCCCCceeec
Q psy12524 46 ACIFAYGQTGSGKSYTMM 63 (151)
Q Consensus 46 ~~v~~yG~~~sGKt~t~~ 63 (151)
..++.+|.+|||||.++.
T Consensus 3 ~~~~l~G~~G~GKTtl~~ 20 (148)
T smart00382 3 EVILIVGPPGSGKTTLAR 20 (148)
T ss_pred CEEEEECCCCCcHHHHHH
Confidence 357889999999999883
No 72
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=86.30 E-value=0.38 Score=37.23 Aligned_cols=18 Identities=39% Similarity=0.573 Sum_probs=16.2
Q ss_pred CeeEEeeccCCCCCceee
Q psy12524 45 NACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 45 ~~~v~~yG~~~sGKt~t~ 62 (151)
.+.++..|.+|||||.+|
T Consensus 127 ~~~ili~G~tGSGKTT~l 144 (270)
T PF00437_consen 127 RGNILISGPTGSGKTTLL 144 (270)
T ss_dssp TEEEEEEESTTSSHHHHH
T ss_pred ceEEEEECCCccccchHH
Confidence 667889999999999988
No 73
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=86.18 E-value=0.25 Score=33.25 Aligned_cols=39 Identities=21% Similarity=0.242 Sum_probs=26.8
Q ss_pred EEeeccCCCCCceeecc------C-----------CCCCCcHHHHHHHHHHHHHhh
Q psy12524 48 IFAYGQTGSGKSYTMMG------S-----------QDNKGIIPRLCDSLFDLIAKQ 86 (151)
Q Consensus 48 v~~yG~~~sGKt~t~~G------~-----------~~~~Gli~~~~~~lf~~~~~~ 86 (151)
|+.+|+.|+|||..+.- . ....+-....+..+|......
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~ 56 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKS 56 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhccccccccccccccccccccccccccccccccccc
Confidence 57899999999988722 1 123456677777888776533
No 74
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=85.95 E-value=0.46 Score=35.29 Aligned_cols=27 Identities=15% Similarity=0.261 Sum_probs=19.3
Q ss_pred HHHHhhcCCCeeEEeeccCCCCCceee
Q psy12524 36 ILDNAFQGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 36 lv~~~~~G~~~~v~~yG~~~sGKt~t~ 62 (151)
.+..++...+...+..|..|||||+++
T Consensus 9 a~~~~l~~~~~~~~l~G~aGtGKT~~l 35 (196)
T PF13604_consen 9 AVRAILTSGDRVSVLQGPAGTGKTTLL 35 (196)
T ss_dssp HHHHHHHCTCSEEEEEESTTSTHHHHH
T ss_pred HHHHHHhcCCeEEEEEECCCCCHHHHH
Confidence 344555544445667899999999988
No 75
>PRK10436 hypothetical protein; Provisional
Probab=85.80 E-value=0.43 Score=40.36 Aligned_cols=28 Identities=36% Similarity=0.482 Sum_probs=22.5
Q ss_pred HHHHhhcCCCeeEEeeccCCCCCceeec
Q psy12524 36 ILDNAFQGYNACIFAYGQTGSGKSYTMM 63 (151)
Q Consensus 36 lv~~~~~G~~~~v~~yG~~~sGKt~t~~ 63 (151)
.+..++..-++.++..|+||||||.|+.
T Consensus 209 ~l~~~~~~~~GliLvtGpTGSGKTTtL~ 236 (462)
T PRK10436 209 QFRQALQQPQGLILVTGPTGSGKTVTLY 236 (462)
T ss_pred HHHHHHHhcCCeEEEECCCCCChHHHHH
Confidence 3445556678889999999999999993
No 76
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=85.70 E-value=0.46 Score=38.43 Aligned_cols=28 Identities=36% Similarity=0.450 Sum_probs=21.7
Q ss_pred HHHHHhhcCCCeeEEeeccCCCCCceee
Q psy12524 35 DILDNAFQGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 35 ~lv~~~~~G~~~~v~~yG~~~sGKt~t~ 62 (151)
+.+..++......++..|++|||||.+|
T Consensus 112 ~~l~~~~~~~~g~ili~G~tGSGKTT~l 139 (343)
T TIGR01420 112 PVLRELAERPRGLILVTGPTGSGKSTTL 139 (343)
T ss_pred HHHHHHHhhcCcEEEEECCCCCCHHHHH
Confidence 4455555444678899999999999999
No 77
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=85.70 E-value=0.47 Score=40.40 Aligned_cols=28 Identities=29% Similarity=0.439 Sum_probs=22.3
Q ss_pred HHHHhhcCCCeeEEeeccCCCCCceeec
Q psy12524 36 ILDNAFQGYNACIFAYGQTGSGKSYTMM 63 (151)
Q Consensus 36 lv~~~~~G~~~~v~~yG~~~sGKt~t~~ 63 (151)
.+..++..-.+.++..|+||||||.|+.
T Consensus 233 ~l~~~~~~~~GlilitGptGSGKTTtL~ 260 (486)
T TIGR02533 233 RFERLIRRPHGIILVTGPTGSGKTTTLY 260 (486)
T ss_pred HHHHHHhcCCCEEEEEcCCCCCHHHHHH
Confidence 4455566667788999999999999993
No 78
>PHA00729 NTP-binding motif containing protein
Probab=85.69 E-value=0.77 Score=35.22 Aligned_cols=30 Identities=20% Similarity=0.315 Sum_probs=22.7
Q ss_pred HHHHHHhhcCCCeeEEeeccCCCCCceeec
Q psy12524 34 RDILDNAFQGYNACIFAYGQTGSGKSYTMM 63 (151)
Q Consensus 34 ~~lv~~~~~G~~~~v~~yG~~~sGKt~t~~ 63 (151)
...++.+..+--..++.+|.+|+|||+...
T Consensus 6 k~~~~~l~~~~f~nIlItG~pGvGKT~LA~ 35 (226)
T PHA00729 6 KKIVSAYNNNGFVSAVIFGKQGSGKTTYAL 35 (226)
T ss_pred HHHHHHHhcCCeEEEEEECCCCCCHHHHHH
Confidence 445566655555689999999999999873
No 79
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=85.67 E-value=0.69 Score=36.60 Aligned_cols=21 Identities=24% Similarity=0.366 Sum_probs=16.6
Q ss_pred cCCCeeEEeeccCCCCCceee
Q psy12524 42 QGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 42 ~G~~~~v~~yG~~~sGKt~t~ 62 (151)
.+....++.+|++|+|||+++
T Consensus 33 ~~~~~~lll~Gp~GtGKT~la 53 (337)
T PRK12402 33 SPNLPHLLVQGPPGSGKTAAV 53 (337)
T ss_pred CCCCceEEEECCCCCCHHHHH
Confidence 344345889999999999887
No 80
>PRK09183 transposase/IS protein; Provisional
Probab=85.65 E-value=0.37 Score=37.52 Aligned_cols=18 Identities=28% Similarity=0.458 Sum_probs=15.3
Q ss_pred eEEeeccCCCCCceeecc
Q psy12524 47 CIFAYGQTGSGKSYTMMG 64 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~~G 64 (151)
.++.+|++|+||||.+..
T Consensus 104 ~v~l~Gp~GtGKThLa~a 121 (259)
T PRK09183 104 NIVLLGPSGVGKTHLAIA 121 (259)
T ss_pred eEEEEeCCCCCHHHHHHH
Confidence 467899999999999843
No 81
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=85.61 E-value=0.44 Score=41.27 Aligned_cols=27 Identities=26% Similarity=0.469 Sum_probs=22.3
Q ss_pred HHHHhhcCCCeeEEeeccCCCCCceee
Q psy12524 36 ILDNAFQGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 36 lv~~~~~G~~~~v~~yG~~~sGKt~t~ 62 (151)
.+..++..-++.++..|.||||||.||
T Consensus 307 ~l~~~~~~~~Glilv~G~tGSGKTTtl 333 (564)
T TIGR02538 307 LFLEAIHKPQGMVLVTGPTGSGKTVSL 333 (564)
T ss_pred HHHHHHHhcCCeEEEECCCCCCHHHHH
Confidence 345566667788999999999999998
No 82
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=85.45 E-value=0.2 Score=35.85 Aligned_cols=22 Identities=27% Similarity=0.459 Sum_probs=13.2
Q ss_pred hcCCCeeEEeeccCCCCCceee
Q psy12524 41 FQGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 41 ~~G~~~~v~~yG~~~sGKt~t~ 62 (151)
..+...+++..|..|+|||..+
T Consensus 20 ~~~~~~~~ll~G~~G~GKT~ll 41 (185)
T PF13191_consen 20 QSGSPRNLLLTGESGSGKTSLL 41 (185)
T ss_dssp SS-----EEE-B-TTSSHHHHH
T ss_pred HcCCCcEEEEECCCCCCHHHHH
Confidence 3566778999999999999987
No 83
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=85.44 E-value=0.32 Score=32.28 Aligned_cols=17 Identities=29% Similarity=0.450 Sum_probs=14.5
Q ss_pred EEeeccCCCCCceeecc
Q psy12524 48 IFAYGQTGSGKSYTMMG 64 (151)
Q Consensus 48 v~~yG~~~sGKt~t~~G 64 (151)
++.+|.+|+|||.++..
T Consensus 3 ~~i~~~~G~GKT~~~~~ 19 (144)
T cd00046 3 VLLAAPTGSGKTLAALL 19 (144)
T ss_pred EEEECCCCCchhHHHHH
Confidence 57889999999998854
No 84
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=85.24 E-value=0.37 Score=35.51 Aligned_cols=25 Identities=24% Similarity=0.477 Sum_probs=15.9
Q ss_pred HHHhhcCCCeeEEeeccCCCCCceee
Q psy12524 37 LDNAFQGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 37 v~~~~~G~~~~v~~yG~~~sGKt~t~ 62 (151)
|..++.... ..+..|+.|||||+++
T Consensus 10 i~~~~~~~~-~~~i~GpPGTGKT~~l 34 (236)
T PF13086_consen 10 IQSALSSNG-ITLIQGPPGTGKTTTL 34 (236)
T ss_dssp HHHHCTSSE--EEEE-STTSSHHHHH
T ss_pred HHHHHcCCC-CEEEECCCCCChHHHH
Confidence 344443333 4667899999999887
No 85
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=84.86 E-value=0.75 Score=36.25 Aligned_cols=32 Identities=31% Similarity=0.283 Sum_probs=22.0
Q ss_pred HHhHHHHHHhhcCCCeeEEeeccCCCCCceee
Q psy12524 31 ALGRDILDNAFQGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 31 ~~~~~lv~~~~~G~~~~v~~yG~~~sGKt~t~ 62 (151)
..+..++...-..-+.++..+|..|||||+.+
T Consensus 6 ~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l 37 (325)
T PF07693_consen 6 KALAEIIKNPDSDDPFVIGLYGEWGSGKSSFL 37 (325)
T ss_pred HHHHHHHhccCCCCCeEEEEECCCCCCHHHHH
Confidence 33334443322256778899999999999988
No 86
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=84.78 E-value=0.34 Score=36.49 Aligned_cols=15 Identities=60% Similarity=0.857 Sum_probs=13.2
Q ss_pred EEeeccCCCCCceee
Q psy12524 48 IFAYGQTGSGKSYTM 62 (151)
Q Consensus 48 v~~yG~~~sGKt~t~ 62 (151)
+..+|.||||||+++
T Consensus 26 ~~I~G~TGsGKS~~~ 40 (229)
T PF01935_consen 26 IAIFGTTGSGKSNTV 40 (229)
T ss_pred EEEECCCCCCHHHHH
Confidence 457899999999999
No 87
>KOG1514|consensus
Probab=84.24 E-value=2.8 Score=37.36 Aligned_cols=29 Identities=34% Similarity=0.753 Sum_probs=22.0
Q ss_pred HHHHHhh--cCCCeeEEeeccCCCCCceeec
Q psy12524 35 DILDNAF--QGYNACIFAYGQTGSGKSYTMM 63 (151)
Q Consensus 35 ~lv~~~~--~G~~~~v~~yG~~~sGKt~t~~ 63 (151)
..+..++ +|-.+|+..-|..|||||+|+.
T Consensus 410 ~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~ 440 (767)
T KOG1514|consen 410 DFLRSFISDQGLGSCMYISGVPGTGKTATVL 440 (767)
T ss_pred HHHHhhcCCCCCceeEEEecCCCCCceehHH
Confidence 3444544 3666688899999999999993
No 88
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=83.94 E-value=0.63 Score=38.04 Aligned_cols=24 Identities=38% Similarity=0.544 Sum_probs=19.5
Q ss_pred HhhcCCCeeEEeeccCCCCCceee
Q psy12524 39 NAFQGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 39 ~~~~G~~~~v~~yG~~~sGKt~t~ 62 (151)
..+......++..|+||||||.++
T Consensus 128 ~~~~~~~glilI~GpTGSGKTTtL 151 (358)
T TIGR02524 128 DAIAPQEGIVFITGATGSGKSTLL 151 (358)
T ss_pred HHHhccCCEEEEECCCCCCHHHHH
Confidence 344445688999999999999998
No 89
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=83.91 E-value=0.79 Score=36.51 Aligned_cols=29 Identities=34% Similarity=0.472 Sum_probs=23.9
Q ss_pred HHHHHHhhcCCCeeEEeeccCCCCCceee
Q psy12524 34 RDILDNAFQGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 34 ~~lv~~~~~G~~~~v~~yG~~~sGKt~t~ 62 (151)
.+.++.+.-...+.|+.-|.|||||+.||
T Consensus 116 Pevlk~la~~kRGLviiVGaTGSGKSTtm 144 (375)
T COG5008 116 PEVLKDLALAKRGLVIIVGATGSGKSTTM 144 (375)
T ss_pred cHHHHHhhcccCceEEEECCCCCCchhhH
Confidence 46667766667778899999999999998
No 90
>PF12846 AAA_10: AAA-like domain
Probab=83.82 E-value=0.39 Score=36.94 Aligned_cols=18 Identities=39% Similarity=0.624 Sum_probs=15.3
Q ss_pred CeeEEeeccCCCCCceee
Q psy12524 45 NACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 45 ~~~v~~yG~~~sGKt~t~ 62 (151)
|..++..|.+|||||.++
T Consensus 1 n~h~~i~G~tGsGKT~~~ 18 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLL 18 (304)
T ss_pred CCeEEEECCCCCcHHHHH
Confidence 345788999999999988
No 91
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=83.72 E-value=0.64 Score=36.29 Aligned_cols=27 Identities=33% Similarity=0.519 Sum_probs=21.0
Q ss_pred HHHHhhcCCCeeEEeeccCCCCCceee
Q psy12524 36 ILDNAFQGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 36 lv~~~~~G~~~~v~~yG~~~sGKt~t~ 62 (151)
.+..++..-...++..|.+|||||.++
T Consensus 71 ~l~~~~~~~~GlilisG~tGSGKTT~l 97 (264)
T cd01129 71 IFRKLLEKPHGIILVTGPTGSGKTTTL 97 (264)
T ss_pred HHHHHHhcCCCEEEEECCCCCcHHHHH
Confidence 345555555667889999999999998
No 92
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=83.68 E-value=0.69 Score=38.06 Aligned_cols=27 Identities=30% Similarity=0.416 Sum_probs=19.8
Q ss_pred HHHHHhhcCCCeeEEeeccCCCCCceee
Q psy12524 35 DILDNAFQGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 35 ~lv~~~~~G~~~~v~~yG~~~sGKt~t~ 62 (151)
.+++.+.. .++.++..|+||||||.++
T Consensus 140 ~~~~~l~~-~~GlilI~G~TGSGKTT~l 166 (372)
T TIGR02525 140 DLFNSLLP-AAGLGLICGETGSGKSTLA 166 (372)
T ss_pred HHHHHHHh-cCCEEEEECCCCCCHHHHH
Confidence 34444433 4567889999999999998
No 93
>PF13479 AAA_24: AAA domain
Probab=83.21 E-value=0.55 Score=35.27 Aligned_cols=20 Identities=35% Similarity=0.516 Sum_probs=16.7
Q ss_pred CeeEEeeccCCCCCceeecc
Q psy12524 45 NACIFAYGQTGSGKSYTMMG 64 (151)
Q Consensus 45 ~~~v~~yG~~~sGKt~t~~G 64 (151)
+..++.||.+|+|||.++..
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~ 22 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAAS 22 (213)
T ss_pred ceEEEEECCCCCCHHHHHHh
Confidence 45789999999999988744
No 94
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=82.78 E-value=0.49 Score=35.15 Aligned_cols=17 Identities=47% Similarity=0.694 Sum_probs=15.1
Q ss_pred eeEEeeccCCCCCceee
Q psy12524 46 ACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 46 ~~v~~yG~~~sGKt~t~ 62 (151)
+.++..|++|||||.++
T Consensus 2 GlilI~GptGSGKTTll 18 (198)
T cd01131 2 GLVLVTGPTGSGKSTTL 18 (198)
T ss_pred cEEEEECCCCCCHHHHH
Confidence 46788999999999998
No 95
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=82.65 E-value=3.4 Score=28.91 Aligned_cols=25 Identities=24% Similarity=0.680 Sum_probs=19.0
Q ss_pred eEEee-ccCCCCCceeeccCCCCCCcHHHHHHHHHH
Q psy12524 47 CIFAY-GQTGSGKSYTMMGSQDNKGIIPRLCDSLFD 81 (151)
Q Consensus 47 ~v~~y-G~~~sGKt~t~~G~~~~~Gli~~~~~~lf~ 81 (151)
.|+.+ |.+|+||+|.- ...++.||.
T Consensus 54 LVlSfHG~tGtGKn~v~----------~liA~~ly~ 79 (127)
T PF06309_consen 54 LVLSFHGWTGTGKNFVS----------RLIAEHLYK 79 (127)
T ss_pred EEEEeecCCCCcHHHHH----------HHHHHHHHh
Confidence 45554 99999999987 566777775
No 96
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=82.43 E-value=1.2 Score=31.34 Aligned_cols=27 Identities=26% Similarity=0.456 Sum_probs=19.6
Q ss_pred HHHHhhcCCCeeEEeeccCCCCCceeecc
Q psy12524 36 ILDNAFQGYNACIFAYGQTGSGKSYTMMG 64 (151)
Q Consensus 36 lv~~~~~G~~~~v~~yG~~~sGKt~t~~G 64 (151)
.++.+.+|.+ ++..|+||+|||.....
T Consensus 7 ~~~~i~~~~~--~li~aptGsGKT~~~~~ 33 (169)
T PF00270_consen 7 AIEAIISGKN--VLISAPTGSGKTLAYIL 33 (169)
T ss_dssp HHHHHHTTSE--EEEECSTTSSHHHHHHH
T ss_pred HHHHHHcCCC--EEEECCCCCccHHHHHH
Confidence 3444555655 67889999999998853
No 97
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=81.69 E-value=0.62 Score=36.09 Aligned_cols=20 Identities=25% Similarity=0.439 Sum_probs=15.4
Q ss_pred CCeeEEeeccCCCCCceeec
Q psy12524 44 YNACIFAYGQTGSGKSYTMM 63 (151)
Q Consensus 44 ~~~~v~~yG~~~sGKt~t~~ 63 (151)
.+..++.-|..|||||.+|.
T Consensus 12 ~~~~~lV~a~AGSGKT~~l~ 31 (315)
T PF00580_consen 12 TEGPLLVNAGAGSGKTTTLL 31 (315)
T ss_dssp -SSEEEEEE-TTSSHHHHHH
T ss_pred CCCCEEEEeCCCCCchHHHH
Confidence 56677888899999999994
No 98
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=81.48 E-value=3.3 Score=31.93 Aligned_cols=43 Identities=28% Similarity=0.410 Sum_probs=28.8
Q ss_pred CCCCCCHHHHHHHHhHHHHHHhhc-C-CCeeEEeeccCCCCCceee
Q psy12524 19 LPNFASQEKVFDALGRDILDNAFQ-G-YNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 19 ~~~~~~q~~vy~~~~~~lv~~~~~-G-~~~~v~~yG~~~sGKt~t~ 62 (151)
+++...|+.+-... ..+++.+.. + .-..++-||+.|.|||...
T Consensus 23 L~efiGQ~~l~~~l-~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA 67 (233)
T PF05496_consen 23 LDEFIGQEHLKGNL-KILIRAAKKRGEALDHMLFYGPPGLGKTTLA 67 (233)
T ss_dssp CCCS-S-HHHHHHH-HHHHHHHHCTTS---EEEEESSTTSSHHHHH
T ss_pred HHHccCcHHHHhhh-HHHHHHHHhcCCCcceEEEECCCccchhHHH
Confidence 45667899888764 667777654 2 3346899999999998665
No 99
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=81.44 E-value=3.2 Score=36.77 Aligned_cols=84 Identities=21% Similarity=0.319 Sum_probs=51.0
Q ss_pred CCCCCCCHHHHHHHHhHHHHHHhhcCCCeeEEeeccCCCCCceeeccC---CCCCCcH----HHHHHHHHHHHHhhcCCC
Q psy12524 18 NLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYTMMGS---QDNKGII----PRLCDSLFDLIAKQESSE 90 (151)
Q Consensus 18 ~~~~~~~q~~vy~~~~~~lv~~~~~G~~~~v~~yG~~~sGKt~t~~G~---~~~~Gli----~~~~~~lf~~~~~~~~~~ 90 (151)
.|.+.-.|..-++. +++.+-+|.... +..|.+|||||++|..- ...|-|+ ...+..|++.+...-. +
T Consensus 7 ~~~~~~~Q~~ai~~----l~~~~~~~~~~~-~l~Gvtgs~kt~~~a~~~~~~~~p~Lvi~~n~~~A~ql~~el~~f~p-~ 80 (655)
T TIGR00631 7 PFQPAGDQPKAIAK----LVEGLTDGEKHQ-TLLGVTGSGKTFTMANVIAQVNRPTLVIAHNKTLAAQLYNEFKEFFP-E 80 (655)
T ss_pred CCCCChHHHHHHHH----HHHhhhcCCCcE-EEECCCCcHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHHHHhCC-C
Confidence 34677777776654 455555554332 37899999999998541 1122221 1244566666654432 3
Q ss_pred ceEEEEEEEEEEECCee
Q psy12524 91 LTYKVEVSYMEIYNEKV 107 (151)
Q Consensus 91 ~~~~v~~S~~eiy~e~v 107 (151)
..+...+||+..|+-..
T Consensus 81 ~~V~~f~sy~d~y~pe~ 97 (655)
T TIGR00631 81 NAVEYFVSYYDYYQPEA 97 (655)
T ss_pred CeEEEEeeecccCCccc
Confidence 34677899999996654
No 100
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=81.39 E-value=1.2 Score=39.36 Aligned_cols=21 Identities=38% Similarity=0.502 Sum_probs=19.5
Q ss_pred cCCCeeEEeeccCCCCCceee
Q psy12524 42 QGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 42 ~G~~~~v~~yG~~~sGKt~t~ 62 (151)
.+.+.+|+..|.+|||||.+.
T Consensus 82 ~~~~Q~IiisGeSGsGKTe~~ 102 (689)
T PF00063_consen 82 TRQNQSIIISGESGSGKTETS 102 (689)
T ss_dssp HTSEEEEEEEESTTSSHHHHH
T ss_pred cccccceeeccccccccccch
Confidence 589999999999999999885
No 101
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=80.97 E-value=1.1 Score=35.05 Aligned_cols=43 Identities=28% Similarity=0.363 Sum_probs=27.5
Q ss_pred CCCCCHHHHHHHHhHHHHHHhhc--CCCeeEEeeccCCCCCceeec
Q psy12524 20 PNFASQEKVFDALGRDILDNAFQ--GYNACIFAYGQTGSGKSYTMM 63 (151)
Q Consensus 20 ~~~~~q~~vy~~~~~~lv~~~~~--G~~~~v~~yG~~~sGKt~t~~ 63 (151)
.+...|+++-+.. ...+..... +....++.||++|+|||+.+.
T Consensus 4 ~~~iG~~~~~~~l-~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~ 48 (305)
T TIGR00635 4 AEFIGQEKVKEQL-QLFIEAAKMRQEALDHLLLYGPPGLGKTTLAH 48 (305)
T ss_pred HHHcCHHHHHHHH-HHHHHHHHhcCCCCCeEEEECCCCCCHHHHHH
Confidence 3445777777654 344443322 333457889999999999883
No 102
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=80.79 E-value=1.6 Score=36.20 Aligned_cols=62 Identities=23% Similarity=0.308 Sum_probs=43.0
Q ss_pred CHHHHHHHHhHHHHHHhhc----CCCeeEEeeccCCCCCceee------ccC-----------CCCCCcHHHHHHHHHHH
Q psy12524 24 SQEKVFDALGRDILDNAFQ----GYNACIFAYGQTGSGKSYTM------MGS-----------QDNKGIIPRLCDSLFDL 82 (151)
Q Consensus 24 ~q~~vy~~~~~~lv~~~~~----G~~~~v~~yG~~~sGKt~t~------~G~-----------~~~~Gli~~~~~~lf~~ 82 (151)
-...+.+.++..+.+..+. ...--++.||+.|+|||+.. .|- ....|=-.+.++++|..
T Consensus 123 ~~p~f~dk~~~hi~kn~l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vGEsEk~IR~~F~~ 202 (413)
T PLN00020 123 IAPAFMDKVAVHIAKNFLALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAGEPGKLIRQRYRE 202 (413)
T ss_pred cCHHHHHHHHHHHHhhhhhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCCcHHHHHHHHHHH
Confidence 3355666676677777663 34456788999999999885 221 12357778899999987
Q ss_pred HHh
Q psy12524 83 IAK 85 (151)
Q Consensus 83 ~~~ 85 (151)
...
T Consensus 203 A~~ 205 (413)
T PLN00020 203 AAD 205 (413)
T ss_pred HHH
Confidence 654
No 103
>PLN03025 replication factor C subunit; Provisional
Probab=80.65 E-value=1.5 Score=34.99 Aligned_cols=22 Identities=23% Similarity=0.515 Sum_probs=16.9
Q ss_pred cCCCeeEEeeccCCCCCceeec
Q psy12524 42 QGYNACIFAYGQTGSGKSYTMM 63 (151)
Q Consensus 42 ~G~~~~v~~yG~~~sGKt~t~~ 63 (151)
.|....++.||++|+|||+++.
T Consensus 31 ~~~~~~lll~Gp~G~GKTtla~ 52 (319)
T PLN03025 31 DGNMPNLILSGPPGTGKTTSIL 52 (319)
T ss_pred cCCCceEEEECCCCCCHHHHHH
Confidence 3444457889999999998873
No 104
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=80.51 E-value=0.76 Score=31.54 Aligned_cols=15 Identities=47% Similarity=0.594 Sum_probs=13.5
Q ss_pred EEeeccCCCCCceee
Q psy12524 48 IFAYGQTGSGKSYTM 62 (151)
Q Consensus 48 v~~yG~~~sGKt~t~ 62 (151)
++..|.+|||||+..
T Consensus 2 ii~~G~pgsGKSt~a 16 (143)
T PF13671_consen 2 IILCGPPGSGKSTLA 16 (143)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 688999999999876
No 105
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=80.41 E-value=0.49 Score=31.56 Aligned_cols=26 Identities=38% Similarity=0.615 Sum_probs=19.1
Q ss_pred EEeeccCCCCCceeeccCCCCCCcHHHHHHHHHHHH
Q psy12524 48 IFAYGQTGSGKSYTMMGSQDNKGIIPRLCDSLFDLI 83 (151)
Q Consensus 48 v~~yG~~~sGKt~t~~G~~~~~Gli~~~~~~lf~~~ 83 (151)
|+.||.+|+|||..+ ...++++.+.+
T Consensus 1 I~i~G~~G~GKS~l~----------~~l~~~l~~~~ 26 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLA----------KELAKDLLKHI 26 (107)
T ss_pred CEEECCCCCCHHHHH----------HHHHHHHHHHh
Confidence 468999999999988 44555555544
No 106
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=80.34 E-value=1.1 Score=36.61 Aligned_cols=17 Identities=41% Similarity=0.585 Sum_probs=15.8
Q ss_pred eeEEeeccCCCCCceee
Q psy12524 46 ACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 46 ~~v~~yG~~~sGKt~t~ 62 (151)
+.++..|.||||||.++
T Consensus 174 ~NILisGGTGSGKTTlL 190 (355)
T COG4962 174 CNILISGGTGSGKTTLL 190 (355)
T ss_pred eeEEEeCCCCCCHHHHH
Confidence 78999999999999887
No 107
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=80.20 E-value=0.63 Score=31.09 Aligned_cols=16 Identities=44% Similarity=0.536 Sum_probs=13.6
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
.++..|.+|||||...
T Consensus 1 vI~I~G~~gsGKST~a 16 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLA 16 (121)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred CEEEECCCCCCHHHHH
Confidence 3678899999999876
No 108
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=80.01 E-value=2.3 Score=38.45 Aligned_cols=37 Identities=22% Similarity=0.507 Sum_probs=28.8
Q ss_pred HHHHHHHh-HHHHHHhhcCCCeeEEeeccCCCCCceeec
Q psy12524 26 EKVFDALG-RDILDNAFQGYNACIFAYGQTGSGKSYTMM 63 (151)
Q Consensus 26 ~~vy~~~~-~~lv~~~~~G~~~~v~~yG~~~sGKt~t~~ 63 (151)
..-|+..+ ..+++.+-+|.+-.++++ .||||||+|.+
T Consensus 166 ~RyyQ~~AI~rv~Eaf~~g~~raLlvM-ATGTGKTrTAi 203 (875)
T COG4096 166 PRYYQIIAIRRVIEAFSKGQNRALLVM-ATGTGKTRTAI 203 (875)
T ss_pred chHHHHHHHHHHHHHHhcCCceEEEEE-ecCCCcceeHH
Confidence 44565444 778888889999977666 79999999984
No 109
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=79.36 E-value=1 Score=35.78 Aligned_cols=28 Identities=39% Similarity=0.547 Sum_probs=20.5
Q ss_pred HHHHHHhhcCCCeeEEeeccCCCCCceee
Q psy12524 34 RDILDNAFQGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 34 ~~lv~~~~~G~~~~v~~yG~~~sGKt~t~ 62 (151)
..++..++.+ ...++..|.+|||||.++
T Consensus 122 ~~~L~~~v~~-~~~ilI~G~tGSGKTTll 149 (299)
T TIGR02782 122 RDVLREAVLA-RKNILVVGGTGSGKTTLA 149 (299)
T ss_pred HHHHHHHHHc-CCeEEEECCCCCCHHHHH
Confidence 3445555553 356789999999999988
No 110
>smart00242 MYSc Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Probab=79.31 E-value=2.2 Score=37.83 Aligned_cols=21 Identities=29% Similarity=0.463 Sum_probs=19.8
Q ss_pred cCCCeeEEeeccCCCCCceee
Q psy12524 42 QGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 42 ~G~~~~v~~yG~~~sGKt~t~ 62 (151)
.+.+.+|+.-|.+|||||.+.
T Consensus 89 ~~~~QsIiisGESGaGKTe~~ 109 (677)
T smart00242 89 DKENQSIIISGESGAGKTENT 109 (677)
T ss_pred cCCCceEEEecCCCCcchHHH
Confidence 589999999999999999987
No 111
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=79.26 E-value=0.66 Score=31.96 Aligned_cols=15 Identities=27% Similarity=0.552 Sum_probs=13.6
Q ss_pred EEeeccCCCCCceee
Q psy12524 48 IFAYGQTGSGKSYTM 62 (151)
Q Consensus 48 v~~yG~~~sGKt~t~ 62 (151)
|+.+|++|+|||..+
T Consensus 2 vlL~G~~G~GKt~l~ 16 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLA 16 (139)
T ss_dssp EEEEESSSSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 688999999999877
No 112
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=79.22 E-value=2 Score=39.64 Aligned_cols=36 Identities=28% Similarity=0.537 Sum_probs=22.9
Q ss_pred HHHHHHHhHHHHHHhhc--CCCeeEEeeccCCCCCceee
Q psy12524 26 EKVFDALGRDILDNAFQ--GYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 26 ~~vy~~~~~~lv~~~~~--G~~~~v~~yG~~~sGKt~t~ 62 (151)
++-++.+. ..+..++. +-+.+++.||.+|+|||.++
T Consensus 761 EeEIeeLa-sfL~paIkgsgpnnvLYIyG~PGTGKTATV 798 (1164)
T PTZ00112 761 EKEIKEVH-GFLESGIKQSGSNQILYISGMPGTGKTATV 798 (1164)
T ss_pred HHHHHHHH-HHHHHHHhcCCCCceEEEECCCCCCHHHHH
Confidence 33344443 33344443 34456789999999999988
No 113
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=79.16 E-value=0.8 Score=36.39 Aligned_cols=41 Identities=22% Similarity=0.390 Sum_probs=27.8
Q ss_pred CeeEEeeccCCCCCceeecc--CC---------------CCCCcHHHHHHHHHHHHHh
Q psy12524 45 NACIFAYGQTGSGKSYTMMG--SQ---------------DNKGIIPRLCDSLFDLIAK 85 (151)
Q Consensus 45 ~~~v~~yG~~~sGKt~t~~G--~~---------------~~~Gli~~~~~~lf~~~~~ 85 (151)
.-+|+-||++|+|||.+... +. ..-|=-.+-++++|.+..+
T Consensus 151 PknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGehVGdgar~Ihely~rA~~ 208 (368)
T COG1223 151 PKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEHVGDGARRIHELYERARK 208 (368)
T ss_pred cceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 44789999999999988743 11 1235556677777876553
No 114
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=78.56 E-value=1.8 Score=33.85 Aligned_cols=21 Identities=19% Similarity=0.322 Sum_probs=16.8
Q ss_pred cCCCeeEEeeccCCCCCceee
Q psy12524 42 QGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 42 ~G~~~~v~~yG~~~sGKt~t~ 62 (151)
.|....++.||+.|+|||.++
T Consensus 35 ~~~~~~~ll~G~~G~GKt~~~ 55 (319)
T PRK00440 35 EKNMPHLLFAGPPGTGKTTAA 55 (319)
T ss_pred CCCCCeEEEECCCCCCHHHHH
Confidence 455455789999999999777
No 115
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=78.51 E-value=0.86 Score=33.23 Aligned_cols=17 Identities=24% Similarity=0.374 Sum_probs=14.8
Q ss_pred eeEEeeccCCCCCceee
Q psy12524 46 ACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 46 ~~v~~yG~~~sGKt~t~ 62 (151)
++++..|++|+|||++.
T Consensus 4 ~~~ll~GpsGvGKT~la 20 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELA 20 (171)
T ss_dssp EEEEEESSTTSSHHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 46788999999999876
No 116
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act
Probab=78.19 E-value=2.6 Score=37.40 Aligned_cols=21 Identities=33% Similarity=0.623 Sum_probs=19.6
Q ss_pred cCCCeeEEeeccCCCCCceee
Q psy12524 42 QGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 42 ~G~~~~v~~yG~~~sGKt~t~ 62 (151)
.|.+.+|+.-|.+|||||.+.
T Consensus 85 ~~~~QsIiisGESGaGKTe~~ 105 (674)
T cd01384 85 EGKSQSILVSGESGAGKTETT 105 (674)
T ss_pred cCCCceEEEECCCCCCchhHH
Confidence 589999999999999999887
No 117
>cd01377 MYSc_type_II Myosin motor domain, type II myosins. Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro
Probab=78.07 E-value=2.5 Score=37.67 Aligned_cols=21 Identities=29% Similarity=0.480 Sum_probs=19.6
Q ss_pred cCCCeeEEeeccCCCCCceee
Q psy12524 42 QGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 42 ~G~~~~v~~yG~~~sGKt~t~ 62 (151)
.+.+.+|+.-|.+|||||.+.
T Consensus 88 ~~~~QsIiiSGESGAGKTes~ 108 (693)
T cd01377 88 DRENQSILITGESGAGKTENT 108 (693)
T ss_pred cCCCceEEEEcCCCCCchHHH
Confidence 589999999999999999887
No 118
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f
Probab=78.06 E-value=2.8 Score=37.21 Aligned_cols=21 Identities=33% Similarity=0.523 Sum_probs=19.6
Q ss_pred cCCCeeEEeeccCCCCCceee
Q psy12524 42 QGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 42 ~G~~~~v~~yG~~~sGKt~t~ 62 (151)
.+.|.+|+.-|.+|||||.+.
T Consensus 89 ~~~~QsIiisGESGaGKTe~~ 109 (677)
T cd01383 89 DEVNQSIIISGESGAGKTETA 109 (677)
T ss_pred cCCCceEEEecCCCCCcchHH
Confidence 589999999999999999887
No 119
>cd00124 MYSc Myosin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila
Probab=77.78 E-value=2.6 Score=37.40 Aligned_cols=25 Identities=28% Similarity=0.466 Sum_probs=21.3
Q ss_pred HHhh-cCCCeeEEeeccCCCCCceee
Q psy12524 38 DNAF-QGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 38 ~~~~-~G~~~~v~~yG~~~sGKt~t~ 62 (151)
..++ .+.+.+|+.-|.+|||||.+.
T Consensus 78 ~~m~~~~~~QsIiisGESGaGKTe~~ 103 (679)
T cd00124 78 RNMLRDRRNQSIIISGESGAGKTENT 103 (679)
T ss_pred HHHHhcCCCceEEEecCCCCCchHHH
Confidence 3443 489999999999999999987
No 120
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=77.48 E-value=1.6 Score=35.11 Aligned_cols=27 Identities=30% Similarity=0.444 Sum_probs=19.1
Q ss_pred HHHHHhhcCCCeeEEeeccCCCCCceee
Q psy12524 35 DILDNAFQGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 35 ~lv~~~~~G~~~~v~~yG~~~sGKt~t~ 62 (151)
.++..++.+ ..+++..|.+|||||.++
T Consensus 139 ~~L~~~v~~-~~~ilI~G~tGSGKTTll 165 (319)
T PRK13894 139 EAIIAAVRA-HRNILVIGGTGSGKTTLV 165 (319)
T ss_pred HHHHHHHHc-CCeEEEECCCCCCHHHHH
Confidence 445555554 345677799999999777
No 121
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins. Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr
Probab=77.24 E-value=3 Score=37.01 Aligned_cols=21 Identities=33% Similarity=0.681 Sum_probs=19.7
Q ss_pred cCCCeeEEeeccCCCCCceee
Q psy12524 42 QGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 42 ~G~~~~v~~yG~~~sGKt~t~ 62 (151)
.+.|.+|+.-|.+|||||.+.
T Consensus 83 ~~~~QsIiisGESGaGKTes~ 103 (671)
T cd01381 83 EKKNQCIIISGESGAGKTEST 103 (671)
T ss_pred cCCCceEEEEcCCCCCeehHH
Confidence 489999999999999999987
No 122
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=77.19 E-value=1.7 Score=31.79 Aligned_cols=28 Identities=32% Similarity=0.336 Sum_probs=19.2
Q ss_pred HHHHHHhhcCCCeeEEeeccCCCCCceee
Q psy12524 34 RDILDNAFQGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 34 ~~lv~~~~~G~~~~v~~yG~~~sGKt~t~ 62 (151)
.+++...+.. ...++..|.+|||||.++
T Consensus 15 ~~~l~~~v~~-g~~i~I~G~tGSGKTTll 42 (186)
T cd01130 15 AAYLWLAVEA-RKNILISGGTGSGKTTLL 42 (186)
T ss_pred HHHHHHHHhC-CCEEEEECCCCCCHHHHH
Confidence 3444444443 345778899999999877
No 123
>PRK06547 hypothetical protein; Provisional
Probab=77.02 E-value=2.8 Score=30.51 Aligned_cols=26 Identities=23% Similarity=0.286 Sum_probs=17.9
Q ss_pred HHHhhcCCCeeEEeeccCCCCCceee
Q psy12524 37 LDNAFQGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 37 v~~~~~G~~~~v~~yG~~~sGKt~t~ 62 (151)
+..+..+..-.|...|.+|||||...
T Consensus 7 ~~~~~~~~~~~i~i~G~~GsGKTt~a 32 (172)
T PRK06547 7 AARLCGGGMITVLIDGRSGSGKTTLA 32 (172)
T ss_pred HHHhhcCCCEEEEEECCCCCCHHHHH
Confidence 34444445555666799999999866
No 124
>cd01378 MYSc_type_I Myosin motor domain, type I myosins. Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon
Probab=77.01 E-value=3 Score=37.00 Aligned_cols=21 Identities=29% Similarity=0.665 Sum_probs=19.7
Q ss_pred cCCCeeEEeeccCCCCCceee
Q psy12524 42 QGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 42 ~G~~~~v~~yG~~~sGKt~t~ 62 (151)
.+.|.||+.-|.+|||||.+.
T Consensus 83 ~~~~QsIiisGESGaGKTe~~ 103 (674)
T cd01378 83 ENENQCVIISGESGAGKTEAA 103 (674)
T ss_pred cCCCceEEEEcCCCCCcchHH
Confidence 589999999999999999987
No 125
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins. Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of
Probab=76.94 E-value=2.7 Score=37.57 Aligned_cols=21 Identities=24% Similarity=0.431 Sum_probs=19.7
Q ss_pred cCCCeeEEeeccCCCCCceee
Q psy12524 42 QGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 42 ~G~~~~v~~yG~~~sGKt~t~ 62 (151)
.+.+.+|+.-|.+|||||.+.
T Consensus 88 ~~~~QsIiisGESGaGKTes~ 108 (717)
T cd01382 88 LKMSQSIIVSGESGAGKTENT 108 (717)
T ss_pred cCCCCeEEEecCCCCChhHHH
Confidence 589999999999999999987
No 126
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=76.54 E-value=1.2 Score=34.38 Aligned_cols=18 Identities=22% Similarity=0.346 Sum_probs=15.6
Q ss_pred CeeEEeeccCCCCCceee
Q psy12524 45 NACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 45 ~~~v~~yG~~~sGKt~t~ 62 (151)
...++.||++|+|||++.
T Consensus 42 ~~~vll~GppGtGKTtlA 59 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVA 59 (261)
T ss_pred cceEEEEcCCCCCHHHHH
Confidence 456789999999999887
No 127
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=76.29 E-value=2.2 Score=33.66 Aligned_cols=21 Identities=19% Similarity=0.347 Sum_probs=15.9
Q ss_pred cCC-CeeEEeeccCCCCCceee
Q psy12524 42 QGY-NACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 42 ~G~-~~~v~~yG~~~sGKt~t~ 62 (151)
.|. ...++.+|++|+|||+.+
T Consensus 39 ~~~~~~~lll~G~~G~GKT~la 60 (316)
T PHA02544 39 KGRIPNMLLHSPSPGTGKTTVA 60 (316)
T ss_pred cCCCCeEEEeeCcCCCCHHHHH
Confidence 454 345566999999999887
No 128
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=76.22 E-value=3.1 Score=37.07 Aligned_cols=21 Identities=38% Similarity=0.697 Sum_probs=19.5
Q ss_pred cCCCeeEEeeccCCCCCceee
Q psy12524 42 QGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 42 ~G~~~~v~~yG~~~sGKt~t~ 62 (151)
.+.|.||+.-|.+|||||.+.
T Consensus 91 ~~~~QsIiisGESGAGKTet~ 111 (692)
T cd01385 91 KKVNQCIVISGESGSGKTEST 111 (692)
T ss_pred cCCCceEEEecCCCCCchHHH
Confidence 588999999999999999887
No 129
>cd01380 MYSc_type_V Myosin motor domain, type V myosins. Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act
Probab=76.22 E-value=3 Score=37.10 Aligned_cols=21 Identities=29% Similarity=0.531 Sum_probs=19.7
Q ss_pred cCCCeeEEeeccCCCCCceee
Q psy12524 42 QGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 42 ~G~~~~v~~yG~~~sGKt~t~ 62 (151)
.+.|.+|+.-|.+|||||.+.
T Consensus 83 ~~~~QsIiiSGESGaGKTes~ 103 (691)
T cd01380 83 DEKNQSIIVSGESGAGKTVSA 103 (691)
T ss_pred cCCCceEEEEcCCCCCchHHH
Confidence 599999999999999999887
No 130
>PRK13342 recombination factor protein RarA; Reviewed
Probab=76.00 E-value=1.5 Score=36.36 Aligned_cols=39 Identities=18% Similarity=0.275 Sum_probs=24.4
Q ss_pred CHHHHHHHHhHHHHHHhhcCCCeeEEeeccCCCCCceeec
Q psy12524 24 SQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYTMM 63 (151)
Q Consensus 24 ~q~~vy~~~~~~lv~~~~~G~~~~v~~yG~~~sGKt~t~~ 63 (151)
.|+.+.... .++...+-.+....++.+|++|+|||....
T Consensus 16 Gq~~~v~~~-~~L~~~i~~~~~~~ilL~GppGtGKTtLA~ 54 (413)
T PRK13342 16 GQEHLLGPG-KPLRRMIEAGRLSSMILWGPPGTGKTTLAR 54 (413)
T ss_pred CcHHHhCcc-hHHHHHHHcCCCceEEEECCCCCCHHHHHH
Confidence 445444321 223333345566678889999999998873
No 131
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins. In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus
Probab=75.57 E-value=3.6 Score=36.59 Aligned_cols=21 Identities=33% Similarity=0.646 Sum_probs=19.7
Q ss_pred cCCCeeEEeeccCCCCCceee
Q psy12524 42 QGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 42 ~G~~~~v~~yG~~~sGKt~t~ 62 (151)
.+.|.+|+.-|.+|||||.+.
T Consensus 84 ~~~~QsIiisGESGaGKTe~~ 104 (677)
T cd01387 84 AKQNQCVIISGESGSGKTEAT 104 (677)
T ss_pred cCCCceEEEEcCCCCCeehHH
Confidence 589999999999999999987
No 132
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=75.06 E-value=1.6 Score=32.29 Aligned_cols=20 Identities=40% Similarity=0.395 Sum_probs=15.0
Q ss_pred CCCeeEEeeccCCCCCceee
Q psy12524 43 GYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 43 G~~~~v~~yG~~~sGKt~t~ 62 (151)
.....++..|++|||||.++
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~ 32 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLA 32 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHH
T ss_pred cCCEEEEEeCCCCCCHHHHH
Confidence 34567888999999999877
No 133
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=75.02 E-value=5.6 Score=36.14 Aligned_cols=25 Identities=36% Similarity=0.465 Sum_probs=20.3
Q ss_pred HHHHhhcCCCeeEEeeccCCCCCceee
Q psy12524 36 ILDNAFQGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 36 lv~~~~~G~~~~v~~yG~~~sGKt~t~ 62 (151)
.+..+.+|.|+.|+| +||||||-+.
T Consensus 30 a~~~i~~G~nvLiiA--PTGsGKTeAA 54 (814)
T COG1201 30 AIPEIHSGENVLIIA--PTGSGKTEAA 54 (814)
T ss_pred HHHHHhCCCceEEEc--CCCCChHHHH
Confidence 445677999997777 8999999876
No 134
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=74.96 E-value=2.3 Score=32.11 Aligned_cols=19 Identities=26% Similarity=0.578 Sum_probs=13.5
Q ss_pred CCeeEEeeccCCCCCceee
Q psy12524 44 YNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 44 ~~~~v~~yG~~~sGKt~t~ 62 (151)
.+-.+++.|+.|||||+..
T Consensus 18 ~~~~v~~~G~AGTGKT~LA 36 (205)
T PF02562_consen 18 NNDLVIVNGPAGTGKTFLA 36 (205)
T ss_dssp H-SEEEEE--TTSSTTHHH
T ss_pred hCCeEEEECCCCCcHHHHH
Confidence 3447899999999999876
No 135
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=74.81 E-value=0.99 Score=33.36 Aligned_cols=17 Identities=41% Similarity=0.591 Sum_probs=12.9
Q ss_pred eeEEeeccCCCCCceee
Q psy12524 46 ACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 46 ~~v~~yG~~~sGKt~t~ 62 (151)
..++..|.+|||||.++
T Consensus 39 ~h~li~G~tgsGKS~~l 55 (205)
T PF01580_consen 39 PHLLIAGATGSGKSTLL 55 (205)
T ss_dssp -SEEEE--TTSSHHHHH
T ss_pred ceEEEEcCCCCCccHHH
Confidence 36799999999999988
No 136
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=74.81 E-value=1.1 Score=33.41 Aligned_cols=16 Identities=44% Similarity=0.590 Sum_probs=14.0
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
.++..|++|+|||.|+
T Consensus 3 vi~lvGptGvGKTTt~ 18 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTI 18 (196)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCchHhHH
Confidence 4667899999999998
No 137
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=74.73 E-value=1.1 Score=36.22 Aligned_cols=17 Identities=47% Similarity=0.593 Sum_probs=14.7
Q ss_pred eEEeeccCCCCCceeec
Q psy12524 47 CIFAYGQTGSGKSYTMM 63 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~~ 63 (151)
-.+.||+|||||++.+.
T Consensus 89 I~~VYGPTG~GKSqLlR 105 (369)
T PF02456_consen 89 IGVVYGPTGSGKSQLLR 105 (369)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 34789999999999885
No 138
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=74.68 E-value=5 Score=31.91 Aligned_cols=16 Identities=31% Similarity=0.576 Sum_probs=14.1
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
.|+.-|.+|||||..|
T Consensus 3 ~vIiTGlSGaGKs~Al 18 (284)
T PF03668_consen 3 LVIITGLSGAGKSTAL 18 (284)
T ss_pred EEEEeCCCcCCHHHHH
Confidence 4678899999999988
No 139
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=74.14 E-value=2.3 Score=29.86 Aligned_cols=19 Identities=26% Similarity=0.319 Sum_probs=14.9
Q ss_pred eeEEeeccCCCCCceeecc
Q psy12524 46 ACIFAYGQTGSGKSYTMMG 64 (151)
Q Consensus 46 ~~v~~yG~~~sGKt~t~~G 64 (151)
..++..|.+|||||.++..
T Consensus 25 ~~~~i~~~~GsGKT~~~~~ 43 (201)
T smart00487 25 RDVILAAPTGSGKTLAALL 43 (201)
T ss_pred CcEEEECCCCCchhHHHHH
Confidence 3557789999999997743
No 140
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=74.13 E-value=2.2 Score=34.46 Aligned_cols=27 Identities=30% Similarity=0.404 Sum_probs=19.4
Q ss_pred HHHHHhhcCCCeeEEeeccCCCCCceee
Q psy12524 35 DILDNAFQGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 35 ~lv~~~~~G~~~~v~~yG~~~sGKt~t~ 62 (151)
.++..++... .+++..|.+|||||.+|
T Consensus 135 ~~L~~~v~~~-~nilI~G~tGSGKTTll 161 (323)
T PRK13833 135 SVIRSAIDSR-LNIVISGGTGSGKTTLA 161 (323)
T ss_pred HHHHHHHHcC-CeEEEECCCCCCHHHHH
Confidence 3444555432 35789999999999988
No 141
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=74.11 E-value=2.4 Score=34.34 Aligned_cols=27 Identities=26% Similarity=0.373 Sum_probs=19.1
Q ss_pred HHHHHhhcCCCeeEEeeccCCCCCceee
Q psy12524 35 DILDNAFQGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 35 ~lv~~~~~G~~~~v~~yG~~~sGKt~t~ 62 (151)
.++..++.+ ..+++..|.+|||||.++
T Consensus 151 ~~L~~~v~~-~~nili~G~tgSGKTTll 177 (332)
T PRK13900 151 EFLEHAVIS-KKNIIISGGTSTGKTTFT 177 (332)
T ss_pred HHHHHHHHc-CCcEEEECCCCCCHHHHH
Confidence 444444443 345788999999999988
No 142
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=74.04 E-value=1.2 Score=30.74 Aligned_cols=15 Identities=47% Similarity=0.806 Sum_probs=13.2
Q ss_pred EEeeccCCCCCceee
Q psy12524 48 IFAYGQTGSGKSYTM 62 (151)
Q Consensus 48 v~~yG~~~sGKt~t~ 62 (151)
++.+|.+|+|||..+
T Consensus 2 ~~i~G~~G~GKT~l~ 16 (165)
T cd01120 2 ILVFGPTGSGKTTLA 16 (165)
T ss_pred eeEeCCCCCCHHHHH
Confidence 467899999999987
No 143
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=73.80 E-value=2.5 Score=36.34 Aligned_cols=29 Identities=31% Similarity=0.589 Sum_probs=22.1
Q ss_pred HHHHHHhhcCCC--eeEEeeccCCCCCceee
Q psy12524 34 RDILDNAFQGYN--ACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 34 ~~lv~~~~~G~~--~~v~~yG~~~sGKt~t~ 62 (151)
+.+++..+.|.. ..++..|++|+|||.|+
T Consensus 32 ~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv 62 (519)
T PF03215_consen 32 RSWLEEMFSGSSPKRILLLTGPSGCGKTTTV 62 (519)
T ss_pred HHHHHHHhccCCCcceEEEECCCCCCHHHHH
Confidence 566666665543 46788999999999998
No 144
>PRK04195 replication factor C large subunit; Provisional
Probab=73.72 E-value=2.6 Score=35.72 Aligned_cols=29 Identities=24% Similarity=0.555 Sum_probs=21.4
Q ss_pred HHHHHHhhcCC-CeeEEeeccCCCCCceee
Q psy12524 34 RDILDNAFQGY-NACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 34 ~~lv~~~~~G~-~~~v~~yG~~~sGKt~t~ 62 (151)
..+++....|. ...++.||++|+|||+++
T Consensus 27 ~~~l~~~~~g~~~~~lLL~GppG~GKTtla 56 (482)
T PRK04195 27 REWIESWLKGKPKKALLLYGPPGVGKTSLA 56 (482)
T ss_pred HHHHHHHhcCCCCCeEEEECCCCCCHHHHH
Confidence 44555555554 457889999999999887
No 145
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=73.69 E-value=1.3 Score=36.15 Aligned_cols=27 Identities=26% Similarity=0.327 Sum_probs=19.1
Q ss_pred HHHHHhhcCCCeeEEeeccCCCCCceee
Q psy12524 35 DILDNAFQGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 35 ~lv~~~~~G~~~~v~~yG~~~sGKt~t~ 62 (151)
.++..+.. ...+++..|.+|||||.++
T Consensus 153 ~~l~~~v~-~~~nilI~G~tGSGKTTll 179 (344)
T PRK13851 153 AFLHACVV-GRLTMLLCGPTGSGKTTMS 179 (344)
T ss_pred HHHHHHHH-cCCeEEEECCCCccHHHHH
Confidence 34444443 2345788999999999988
No 146
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=73.21 E-value=4.6 Score=31.73 Aligned_cols=16 Identities=44% Similarity=0.596 Sum_probs=13.9
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
.+...|.+|+|||.|+
T Consensus 196 vi~~vGptGvGKTTt~ 211 (282)
T TIGR03499 196 VIALVGPTGVGKTTTL 211 (282)
T ss_pred EEEEECCCCCCHHHHH
Confidence 5666799999999998
No 147
>KOG0736|consensus
Probab=73.13 E-value=4.6 Score=36.55 Aligned_cols=21 Identities=14% Similarity=0.349 Sum_probs=17.6
Q ss_pred CCCcHHHHHHHHHHHHHhhcC
Q psy12524 68 NKGIIPRLCDSLFDLIAKQES 88 (151)
Q Consensus 68 ~~Gli~~~~~~lf~~~~~~~~ 88 (151)
+-|+|-|++.+|.+.+.....
T Consensus 786 SGGVMDRVVSQLLAELDgls~ 806 (953)
T KOG0736|consen 786 SGGVMDRVVSQLLAELDGLSD 806 (953)
T ss_pred ccccHHHHHHHHHHHhhcccC
Confidence 469999999999999887653
No 148
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=72.96 E-value=1.7 Score=28.92 Aligned_cols=15 Identities=40% Similarity=0.397 Sum_probs=12.8
Q ss_pred EEeeccCCCCCceee
Q psy12524 48 IFAYGQTGSGKSYTM 62 (151)
Q Consensus 48 v~~yG~~~sGKt~t~ 62 (151)
|+..|.+|||||...
T Consensus 1 I~i~G~~GsGKtTia 15 (129)
T PF13238_consen 1 IGISGIPGSGKTTIA 15 (129)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred CEEECCCCCCHHHHH
Confidence 567899999999876
No 149
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=72.65 E-value=1.4 Score=35.74 Aligned_cols=19 Identities=26% Similarity=0.543 Sum_probs=15.8
Q ss_pred CeeEEeeccCCCCCceeec
Q psy12524 45 NACIFAYGQTGSGKSYTMM 63 (151)
Q Consensus 45 ~~~v~~yG~~~sGKt~t~~ 63 (151)
...++.||++|+|||+++.
T Consensus 156 p~gvLL~GppGtGKT~lak 174 (364)
T TIGR01242 156 PKGVLLYGPPGTGKTLLAK 174 (364)
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 3458999999999998873
No 150
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=72.59 E-value=2.2 Score=31.95 Aligned_cols=28 Identities=29% Similarity=0.433 Sum_probs=21.0
Q ss_pred HHHHHhhcC---CCeeEEeeccCCCCCceee
Q psy12524 35 DILDNAFQG---YNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 35 ~lv~~~~~G---~~~~v~~yG~~~sGKt~t~ 62 (151)
+-++.++.| ....+..+|.+|||||..+
T Consensus 6 ~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~ 36 (235)
T cd01123 6 KALDELLGGGIETGSITEIFGEFGSGKTQLC 36 (235)
T ss_pred hhhHhhccCCCCCCeEEEEECCCCCCHHHHH
Confidence 345666664 3556788999999999877
No 151
>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the
Probab=72.39 E-value=4.2 Score=36.73 Aligned_cols=21 Identities=24% Similarity=0.466 Sum_probs=19.6
Q ss_pred cCCCeeEEeeccCCCCCceee
Q psy12524 42 QGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 42 ~G~~~~v~~yG~~~sGKt~t~ 62 (151)
.+.+.+|+.-|.+|||||.+.
T Consensus 83 ~~~~QsIiiSGESGAGKTe~t 103 (767)
T cd01386 83 TRRDQSIIFLGRSGAGKTTSC 103 (767)
T ss_pred cCCCceEEEecCCCCCcHHHH
Confidence 589999999999999999887
No 152
>PRK04328 hypothetical protein; Provisional
Probab=72.33 E-value=3.2 Score=31.96 Aligned_cols=28 Identities=25% Similarity=0.360 Sum_probs=21.3
Q ss_pred HHHHHhhcC---CCeeEEeeccCCCCCceee
Q psy12524 35 DILDNAFQG---YNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 35 ~lv~~~~~G---~~~~v~~yG~~~sGKt~t~ 62 (151)
+-++.++.| ...+++.+|.+|+|||...
T Consensus 10 ~~LD~lL~GGip~gs~ili~G~pGsGKT~l~ 40 (249)
T PRK04328 10 PGMDEILYGGIPERNVVLLSGGPGTGKSIFS 40 (249)
T ss_pred hhHHHHhcCCCcCCcEEEEEcCCCCCHHHHH
Confidence 345677765 4778899999999997653
No 153
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=72.17 E-value=4.7 Score=33.43 Aligned_cols=18 Identities=33% Similarity=0.534 Sum_probs=15.9
Q ss_pred CeeEEeeccCCCCCceee
Q psy12524 45 NACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 45 ~~~v~~yG~~~sGKt~t~ 62 (151)
...++.+|.+|+|||.|+
T Consensus 174 ~~vi~lvGptGvGKTTT~ 191 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTI 191 (388)
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 457888999999999998
No 154
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=71.43 E-value=2.5 Score=33.19 Aligned_cols=27 Identities=22% Similarity=0.411 Sum_probs=19.1
Q ss_pred HHHHhhcCCCeeEEeeccCCCCCceeec
Q psy12524 36 ILDNAFQGYNACIFAYGQTGSGKSYTMM 63 (151)
Q Consensus 36 lv~~~~~G~~~~v~~yG~~~sGKt~t~~ 63 (151)
+++..+. .+.-++..|++|+|||.++.
T Consensus 25 ll~~l~~-~~~pvLl~G~~GtGKT~li~ 51 (272)
T PF12775_consen 25 LLDLLLS-NGRPVLLVGPSGTGKTSLIQ 51 (272)
T ss_dssp HHHHHHH-CTEEEEEESSTTSSHHHHHH
T ss_pred HHHHHHH-cCCcEEEECCCCCchhHHHH
Confidence 3444443 25567899999999998873
No 155
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=71.05 E-value=2.9 Score=36.68 Aligned_cols=27 Identities=26% Similarity=0.487 Sum_probs=20.8
Q ss_pred HHHHhhcCCCeeEEeeccCCCCCceee
Q psy12524 36 ILDNAFQGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 36 lv~~~~~G~~~~v~~yG~~~sGKt~t~ 62 (151)
++..+..+....++.+|++|+|||...
T Consensus 166 l~~~ia~~~~~~vlL~Gp~GtGKTTLA 192 (615)
T TIGR02903 166 LLAKVASPFPQHIILYGPPGVGKTTAA 192 (615)
T ss_pred HHHHHhcCCCCeEEEECCCCCCHHHHH
Confidence 344455567777899999999999866
No 156
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=71.03 E-value=2 Score=35.47 Aligned_cols=61 Identities=23% Similarity=0.448 Sum_probs=39.2
Q ss_pred HHHHHHHhHHHHHH-hhc--CCC--eeEEeeccCCCCCceeecc--------------CC---CCCCcHHHHHHHHHHHH
Q psy12524 26 EKVFDALGRDILDN-AFQ--GYN--ACIFAYGQTGSGKSYTMMG--------------SQ---DNKGIIPRLCDSLFDLI 83 (151)
Q Consensus 26 ~~vy~~~~~~lv~~-~~~--G~~--~~v~~yG~~~sGKt~t~~G--------------~~---~~~Gli~~~~~~lf~~~ 83 (151)
+++.+.+..||.+. .+. |.. --|+.||+.|||||-...- +. .-.|==+|.++++|...
T Consensus 161 ~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiGEGaRlVRelF~lA 240 (406)
T COG1222 161 QEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGEGARLVRELFELA 240 (406)
T ss_pred HHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhccchHHHHHHHHHH
Confidence 45555555677654 333 553 3689999999999866522 11 11355578889999876
Q ss_pred Hhh
Q psy12524 84 AKQ 86 (151)
Q Consensus 84 ~~~ 86 (151)
..+
T Consensus 241 rek 243 (406)
T COG1222 241 REK 243 (406)
T ss_pred hhc
Confidence 644
No 157
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=70.59 E-value=1.7 Score=26.43 Aligned_cols=16 Identities=38% Similarity=0.542 Sum_probs=13.4
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
..+..|.+|||||..|
T Consensus 25 ~tli~G~nGsGKSTll 40 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLL 40 (62)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3567899999999877
No 158
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=70.52 E-value=6.7 Score=32.26 Aligned_cols=39 Identities=23% Similarity=0.363 Sum_probs=24.4
Q ss_pred CCHHHHHHHHhHHHHHHhhcC---CCeeEEeeccCCCCCceee
Q psy12524 23 ASQEKVFDALGRDILDNAFQG---YNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 23 ~~q~~vy~~~~~~lv~~~~~G---~~~~v~~yG~~~sGKt~t~ 62 (151)
..+++.-+..+.- +.....| ....++..|++|+|||...
T Consensus 54 ~G~~~~i~~lv~~-l~~~a~g~~~~r~il~L~GPPGsGKStla 95 (361)
T smart00763 54 FGMEEAIERFVNY-FKSAAQGLEERKQILYLLGPVGGGKSSLV 95 (361)
T ss_pred cCcHHHHHHHHHH-HHHHHhcCCCCCcEEEEECCCCCCHHHHH
Confidence 3556666666543 3333333 4566788899999997544
No 159
>PF05729 NACHT: NACHT domain
Probab=70.32 E-value=2 Score=29.86 Aligned_cols=16 Identities=38% Similarity=0.677 Sum_probs=14.0
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
.++..|..|+|||..+
T Consensus 2 ~l~I~G~~G~GKStll 17 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLL 17 (166)
T ss_pred EEEEECCCCCChHHHH
Confidence 3678999999999887
No 160
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=70.28 E-value=3.1 Score=37.29 Aligned_cols=22 Identities=23% Similarity=0.376 Sum_probs=18.1
Q ss_pred cCCCeeEEeeccCCCCCceeec
Q psy12524 42 QGYNACIFAYGQTGSGKSYTMM 63 (151)
Q Consensus 42 ~G~~~~v~~yG~~~sGKt~t~~ 63 (151)
.+....++.||++|+|||++..
T Consensus 49 ~~~~~slLL~GPpGtGKTTLA~ 70 (725)
T PRK13341 49 ADRVGSLILYGPPGVGKTTLAR 70 (725)
T ss_pred cCCCceEEEECCCCCCHHHHHH
Confidence 4555678999999999998874
No 161
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=69.63 E-value=2 Score=30.93 Aligned_cols=17 Identities=41% Similarity=0.614 Sum_probs=14.6
Q ss_pred eeEEeeccCCCCCceee
Q psy12524 46 ACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 46 ~~v~~yG~~~sGKt~t~ 62 (151)
...+.+|.+|+|||..+
T Consensus 20 g~~vi~G~Ng~GKStil 36 (202)
T PF13476_consen 20 GLNVIYGPNGSGKSTIL 36 (202)
T ss_dssp EEEEEEESTTSSHHHHH
T ss_pred CcEEEECCCCCCHHHHH
Confidence 45678999999999888
No 162
>KOG3859|consensus
Probab=69.40 E-value=2.6 Score=33.81 Aligned_cols=29 Identities=34% Similarity=0.550 Sum_probs=23.7
Q ss_pred HHHHHH-hhcCCCeeEEeeccCCCCCceee
Q psy12524 34 RDILDN-AFQGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 34 ~~lv~~-~~~G~~~~v~~yG~~~sGKt~t~ 62 (151)
..||+. +-+|+.-.|++.|.||.||+..|
T Consensus 30 dQLV~ksv~~GF~FNilCvGETg~GKsTLm 59 (406)
T KOG3859|consen 30 DQLVNKSVSQGFCFNILCVGETGLGKSTLM 59 (406)
T ss_pred HHHHHHHHhcCceEEEEEeccCCccHHHHH
Confidence 456654 45699999999999999999776
No 163
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=69.30 E-value=4.1 Score=29.57 Aligned_cols=21 Identities=24% Similarity=0.406 Sum_probs=16.8
Q ss_pred cCCCeeEEeeccCCCCCceee
Q psy12524 42 QGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 42 ~G~~~~v~~yG~~~sGKt~t~ 62 (151)
...+..|+.+|.+||||+...
T Consensus 19 a~~~~pVlI~GE~GtGK~~lA 39 (168)
T PF00158_consen 19 ASSDLPVLITGETGTGKELLA 39 (168)
T ss_dssp TTSTS-EEEECSTTSSHHHHH
T ss_pred hCCCCCEEEEcCCCCcHHHHH
Confidence 366788999999999998665
No 164
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=69.11 E-value=1.7 Score=34.81 Aligned_cols=39 Identities=28% Similarity=0.376 Sum_probs=23.7
Q ss_pred CCHHHHHHHHhHHHHHHhhc--CCCeeEEeeccCCCCCceee
Q psy12524 23 ASQEKVFDALGRDILDNAFQ--GYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 23 ~~q~~vy~~~~~~lv~~~~~--G~~~~v~~yG~~~sGKt~t~ 62 (151)
..|+++-+.. ..++..... +....++.||++|+|||+.+
T Consensus 28 vG~~~~~~~l-~~~l~~~~~~~~~~~~~ll~GppG~GKT~la 68 (328)
T PRK00080 28 IGQEKVKENL-KIFIEAAKKRGEALDHVLLYGPPGLGKTTLA 68 (328)
T ss_pred cCcHHHHHHH-HHHHHHHHhcCCCCCcEEEECCCCccHHHHH
Confidence 4555555443 333333322 22346788999999999887
No 165
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=69.09 E-value=6.6 Score=30.17 Aligned_cols=30 Identities=17% Similarity=0.118 Sum_probs=22.2
Q ss_pred hHHHHHHhhc--CCCeeEEeeccCCCCCceee
Q psy12524 33 GRDILDNAFQ--GYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 33 ~~~lv~~~~~--G~~~~v~~yG~~~sGKt~t~ 62 (151)
+..+.+.+.+ .....|..+|..|+|||...
T Consensus 5 ~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA 36 (287)
T PF00931_consen 5 IEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLA 36 (287)
T ss_dssp HHHHHHHHHTTTTSSEEEEEEESTTSSHHHHH
T ss_pred HHHHHHHhhCCCCCeEEEEEEcCCcCCcceee
Confidence 3455555555 56677889999999998776
No 166
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=68.99 E-value=1.9 Score=35.59 Aligned_cols=40 Identities=28% Similarity=0.438 Sum_probs=26.4
Q ss_pred CeeEEeeccCCCCCceeecc------CC-----------CCCCcHHHHHHHHHHHHH
Q psy12524 45 NACIFAYGQTGSGKSYTMMG------SQ-----------DNKGIIPRLCDSLFDLIA 84 (151)
Q Consensus 45 ~~~v~~yG~~~sGKt~t~~G------~~-----------~~~Gli~~~~~~lf~~~~ 84 (151)
...++.||++|+|||..... .. ...|-..+.++.+|+...
T Consensus 165 p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~ 221 (389)
T PRK03992 165 PKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQKFIGEGARLVRELFELAR 221 (389)
T ss_pred CCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhHhhccchHHHHHHHHHHHH
Confidence 44689999999999987622 10 112444567778887654
No 167
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=68.98 E-value=3.4 Score=36.89 Aligned_cols=23 Identities=22% Similarity=0.300 Sum_probs=18.3
Q ss_pred cCCCeeEEeeccCCCCCceeecc
Q psy12524 42 QGYNACIFAYGQTGSGKSYTMMG 64 (151)
Q Consensus 42 ~G~~~~v~~yG~~~sGKt~t~~G 64 (151)
.+...+++.||.+|+|||....+
T Consensus 200 ~~~~~n~lL~G~pG~GKT~l~~~ 222 (731)
T TIGR02639 200 RRKKNNPLLVGEPGVGKTAIAEG 222 (731)
T ss_pred cCCCCceEEECCCCCCHHHHHHH
Confidence 44455678999999999999854
No 168
>PHA02244 ATPase-like protein
Probab=68.86 E-value=5.1 Score=33.18 Aligned_cols=19 Identities=32% Similarity=0.485 Sum_probs=14.9
Q ss_pred cCCCeeEEeeccCCCCCceee
Q psy12524 42 QGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 42 ~G~~~~v~~yG~~~sGKt~t~ 62 (151)
.+.+ |+..|++|+|||+..
T Consensus 118 ~~~P--VLL~GppGtGKTtLA 136 (383)
T PHA02244 118 ANIP--VFLKGGAGSGKNHIA 136 (383)
T ss_pred cCCC--EEEECCCCCCHHHHH
Confidence 3544 566999999999877
No 169
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=68.76 E-value=2 Score=32.81 Aligned_cols=20 Identities=30% Similarity=0.526 Sum_probs=16.6
Q ss_pred CeeEEeeccCCCCCceeecc
Q psy12524 45 NACIFAYGQTGSGKSYTMMG 64 (151)
Q Consensus 45 ~~~v~~yG~~~sGKt~t~~G 64 (151)
...++.||.+|+|||.+...
T Consensus 12 ~~~~liyG~~G~GKtt~a~~ 31 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKY 31 (220)
T ss_pred CcEEEEECCCCCCHHHHHHh
Confidence 45689999999999988743
No 170
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=68.74 E-value=5.8 Score=29.95 Aligned_cols=37 Identities=24% Similarity=0.209 Sum_probs=22.8
Q ss_pred HHHHHHHhHHHHHHhhc-CCCeeEEeeccCCCCCceee
Q psy12524 26 EKVFDALGRDILDNAFQ-GYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 26 ~~vy~~~~~~lv~~~~~-G~~~~v~~yG~~~sGKt~t~ 62 (151)
+.++...+.-+....-. +....+...|.+|||||..+
T Consensus 13 ~~~~~~l~~~~~~~~~~~~~~~iigi~G~~GsGKTTl~ 50 (229)
T PRK09270 13 EAVHKPLLRRLAALQAEPQRRTIVGIAGPPGAGKSTLA 50 (229)
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHH
Confidence 45555555444433333 44445556699999999866
No 171
>KOG2543|consensus
Probab=68.68 E-value=2.2 Score=35.43 Aligned_cols=19 Identities=32% Similarity=0.775 Sum_probs=15.7
Q ss_pred CeeEEeeccCCCCCceeec
Q psy12524 45 NACIFAYGQTGSGKSYTMM 63 (151)
Q Consensus 45 ~~~v~~yG~~~sGKt~t~~ 63 (151)
...++.||.+|||||+++.
T Consensus 30 PS~~~iyG~sgTGKT~~~r 48 (438)
T KOG2543|consen 30 PSIVHIYGHSGTGKTYLVR 48 (438)
T ss_pred ceeEEEeccCCCchhHHHH
Confidence 3456899999999999883
No 172
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=68.26 E-value=6.3 Score=30.95 Aligned_cols=25 Identities=28% Similarity=0.527 Sum_probs=20.9
Q ss_pred HHhhcCCCee-EEeeccCCCCCceee
Q psy12524 38 DNAFQGYNAC-IFAYGQTGSGKSYTM 62 (151)
Q Consensus 38 ~~~~~G~~~~-v~~yG~~~sGKt~t~ 62 (151)
..++.|..+. |+.+|.-|+||+..+
T Consensus 77 ~~F~~G~pANnVLLwGaRGtGKSSLV 102 (287)
T COG2607 77 EQFAEGLPANNVLLWGARGTGKSSLV 102 (287)
T ss_pred HHHHcCCcccceEEecCCCCChHHHH
Confidence 4577888764 899999999999877
No 173
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=68.14 E-value=4.9 Score=31.12 Aligned_cols=27 Identities=26% Similarity=0.378 Sum_probs=18.1
Q ss_pred HHHHHHhhcCCCeeEEeeccCCCCCceee
Q psy12524 34 RDILDNAFQGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 34 ~~lv~~~~~G~~~~v~~yG~~~sGKt~t~ 62 (151)
..+...+..|. .++..|.+|+|||...
T Consensus 12 ~~~l~~l~~g~--~vLL~G~~GtGKT~lA 38 (262)
T TIGR02640 12 SRALRYLKSGY--PVHLRGPAGTGKTTLA 38 (262)
T ss_pred HHHHHHHhcCC--eEEEEcCCCCCHHHHH
Confidence 33334444454 4567899999999876
No 174
>KOG1803|consensus
Probab=68.04 E-value=2.8 Score=36.64 Aligned_cols=17 Identities=29% Similarity=0.557 Sum_probs=14.7
Q ss_pred eeEEeeccCCCCCceee
Q psy12524 46 ACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 46 ~~v~~yG~~~sGKt~t~ 62 (151)
...+..|++|||||+|+
T Consensus 202 ~l~~I~GPPGTGKT~Tl 218 (649)
T KOG1803|consen 202 DLLIIHGPPGTGKTRTL 218 (649)
T ss_pred CceEeeCCCCCCceeeH
Confidence 34667899999999999
No 175
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=67.86 E-value=4.5 Score=33.80 Aligned_cols=24 Identities=33% Similarity=0.511 Sum_probs=18.0
Q ss_pred HHHHhhcCCCeeEEeeccCCCCCcee
Q psy12524 36 ILDNAFQGYNACIFAYGQTGSGKSYT 61 (151)
Q Consensus 36 lv~~~~~G~~~~v~~yG~~~sGKt~t 61 (151)
.+..+++|.+ +++.++||||||..
T Consensus 34 ai~~~l~g~d--vi~~a~TGsGKT~a 57 (460)
T PRK11776 34 SLPAILAGKD--VIAQAKTGSGKTAA 57 (460)
T ss_pred HHHHHhcCCC--EEEECCCCCcHHHH
Confidence 3445667876 67788999999965
No 176
>PF10923 DUF2791: P-loop Domain of unknown function (DUF2791); InterPro: IPR021228 This is a family of proteins found in archaea and bacteria. Some of the proteins in this family are annotated as being methyl-accepting chemotaxis proteins and ATP/GTP binding proteins.
Probab=67.42 E-value=5.5 Score=33.37 Aligned_cols=29 Identities=31% Similarity=0.479 Sum_probs=24.9
Q ss_pred HHHHHHhhcCCCeeEEeeccCCCCCceee
Q psy12524 34 RDILDNAFQGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 34 ~~lv~~~~~G~~~~v~~yG~~~sGKt~t~ 62 (151)
..-++.+-+|.+..-+..|.-||||||.+
T Consensus 38 ~~~l~~v~~G~s~~kfi~G~YGsGKTf~l 66 (416)
T PF10923_consen 38 DRDLDRVADGGSSFKFIRGEYGSGKTFFL 66 (416)
T ss_pred HHHHHHHhCCCCeEEEEEeCCCCcHHHHH
Confidence 34457788899999999999999999988
No 177
>PRK13764 ATPase; Provisional
Probab=67.40 E-value=3 Score=36.52 Aligned_cols=19 Identities=32% Similarity=0.357 Sum_probs=16.3
Q ss_pred CCeeEEeeccCCCCCceee
Q psy12524 44 YNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 44 ~~~~v~~yG~~~sGKt~t~ 62 (151)
....++..|.||||||.++
T Consensus 256 ~~~~ILIsG~TGSGKTTll 274 (602)
T PRK13764 256 RAEGILIAGAPGAGKSTFA 274 (602)
T ss_pred cCCEEEEECCCCCCHHHHH
Confidence 3455899999999999998
No 178
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=67.12 E-value=2.4 Score=35.01 Aligned_cols=18 Identities=33% Similarity=0.446 Sum_probs=15.6
Q ss_pred CeeEEeeccCCCCCceee
Q psy12524 45 NACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 45 ~~~v~~yG~~~sGKt~t~ 62 (151)
...++..|++|+|||.|+
T Consensus 137 g~ii~lvGptGvGKTTti 154 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTT 154 (374)
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 456778899999999998
No 179
>PTZ00014 myosin-A; Provisional
Probab=67.12 E-value=6.6 Score=35.76 Aligned_cols=21 Identities=24% Similarity=0.395 Sum_probs=19.1
Q ss_pred cCCCeeEEeeccCCCCCceee
Q psy12524 42 QGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 42 ~G~~~~v~~yG~~~sGKt~t~ 62 (151)
.+.|.+|+.-|.+|+|||.+.
T Consensus 180 ~~~~QsIiiSGESGAGKTe~t 200 (821)
T PTZ00014 180 VKKSQTIIVSGESGAGKTEAT 200 (821)
T ss_pred cCCCceEEEEcCCCCCchHHH
Confidence 589999999999999999765
No 180
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=67.07 E-value=5.2 Score=33.93 Aligned_cols=27 Identities=26% Similarity=0.357 Sum_probs=18.3
Q ss_pred HHHHHHhhcCCCeeEEeeccCCCCCceee
Q psy12524 34 RDILDNAFQGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 34 ~~lv~~~~~G~~~~v~~yG~~~sGKt~t~ 62 (151)
..++..+..+. .++.+|.+|+|||+..
T Consensus 185 e~l~~~L~~~~--~iil~GppGtGKT~lA 211 (459)
T PRK11331 185 ETILKRLTIKK--NIILQGPPGVGKTFVA 211 (459)
T ss_pred HHHHHHHhcCC--CEEEECCCCCCHHHHH
Confidence 34444444444 4566999999999776
No 181
>KOG0651|consensus
Probab=66.94 E-value=2.7 Score=34.18 Aligned_cols=78 Identities=19% Similarity=0.347 Sum_probs=47.6
Q ss_pred CCeEEEeceEeccCCCCCCCCCCHHHHHH-HHhHHHHHHhhc---CC--CeeEEeeccCCCCCceee------ccC----
Q psy12524 2 PPKTFAFDHCFYSLDPNLPNFASQEKVFD-ALGRDILDNAFQ---GY--NACIFAYGQTGSGKSYTM------MGS---- 65 (151)
Q Consensus 2 ~~k~f~fD~vf~~~d~~~~~~~~q~~vy~-~~~~~lv~~~~~---G~--~~~v~~yG~~~sGKt~t~------~G~---- 65 (151)
.|+.++|+++- ....|-.-|. .+..|+++..+- |. .--++.||+.|+|||+.. +|-
T Consensus 125 ~~~~~s~~~~g--------gl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~ 196 (388)
T KOG0651|consen 125 DPRNISFENVG--------GLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLK 196 (388)
T ss_pred CccccCHHHhC--------ChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEE
Confidence 34556666665 1223333333 334677766432 33 335789999999999865 231
Q ss_pred -------CCCCCcHHHHHHHHHHHHHhhc
Q psy12524 66 -------QDNKGIIPRLCDSLFDLIAKQE 87 (151)
Q Consensus 66 -------~~~~Gli~~~~~~lf~~~~~~~ 87 (151)
+...|=-.|.+++.|+......
T Consensus 197 v~ss~lv~kyiGEsaRlIRemf~yA~~~~ 225 (388)
T KOG0651|consen 197 VVSSALVDKYIGESARLIRDMFRYAREVI 225 (388)
T ss_pred eeHhhhhhhhcccHHHHHHHHHHHHhhhC
Confidence 1246778899999998876543
No 182
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=66.74 E-value=2.7 Score=34.30 Aligned_cols=17 Identities=41% Similarity=0.597 Sum_probs=14.5
Q ss_pred eeEEeeccCCCCCceee
Q psy12524 46 ACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 46 ~~v~~yG~~~sGKt~t~ 62 (151)
+.++..|+||||||...
T Consensus 98 SNILLiGPTGsGKTlLA 114 (408)
T COG1219 98 SNILLIGPTGSGKTLLA 114 (408)
T ss_pred ccEEEECCCCCcHHHHH
Confidence 46899999999999765
No 183
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=66.49 E-value=4.6 Score=32.26 Aligned_cols=23 Identities=30% Similarity=0.312 Sum_probs=19.2
Q ss_pred hcCCCeeEEeeccCCCCCceeec
Q psy12524 41 FQGYNACIFAYGQTGSGKSYTMM 63 (151)
Q Consensus 41 ~~G~~~~v~~yG~~~sGKt~t~~ 63 (151)
....+..++.+|..|||||.+|.
T Consensus 19 ~~~~~~r~vL~G~~GsGKS~~L~ 41 (309)
T PF10236_consen 19 KSSKNNRYVLTGERGSGKSVLLA 41 (309)
T ss_pred ccCCceEEEEECCCCCCHHHHHH
Confidence 34667789999999999999983
No 184
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=66.38 E-value=2 Score=36.56 Aligned_cols=24 Identities=25% Similarity=0.576 Sum_probs=17.8
Q ss_pred EEeeccCCCCCceeeccCCCCCCcHHH
Q psy12524 48 IFAYGQTGSGKSYTMMGSQDNKGIIPR 74 (151)
Q Consensus 48 v~~yG~~~sGKt~t~~G~~~~~Gli~~ 74 (151)
++.+|+.|||||.+. ..-+||+|.
T Consensus 201 Ll~~GpPGtGKTmla---~Rl~~lLPp 224 (490)
T COG0606 201 LLLVGPPGTGKTMLA---SRLPGLLPP 224 (490)
T ss_pred EEEecCCCCchHHhh---hhhcccCCC
Confidence 689999999999877 233566543
No 185
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=66.27 E-value=9.6 Score=33.59 Aligned_cols=39 Identities=18% Similarity=0.241 Sum_probs=27.0
Q ss_pred CCHHHHHHHHhHHHHHHhh--cCCCeeEEeeccCCCCCcee
Q psy12524 23 ASQEKVFDALGRDILDNAF--QGYNACIFAYGQTGSGKSYT 61 (151)
Q Consensus 23 ~~q~~vy~~~~~~lv~~~~--~G~~~~v~~yG~~~sGKt~t 61 (151)
-.++++-+.++..+...+. ......++..|++|+|||..
T Consensus 79 yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsL 119 (644)
T PRK15455 79 YGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSL 119 (644)
T ss_pred cCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHH
Confidence 3667777777766644433 34455677789999999843
No 186
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=66.00 E-value=2.2 Score=36.17 Aligned_cols=18 Identities=22% Similarity=0.425 Sum_probs=15.5
Q ss_pred eeEEeeccCCCCCceeec
Q psy12524 46 ACIFAYGQTGSGKSYTMM 63 (151)
Q Consensus 46 ~~v~~yG~~~sGKt~t~~ 63 (151)
-.++.||++|||||+.+.
T Consensus 89 ~giLL~GppGtGKT~la~ 106 (495)
T TIGR01241 89 KGVLLVGPPGTGKTLLAK 106 (495)
T ss_pred CcEEEECCCCCCHHHHHH
Confidence 358999999999999873
No 187
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=65.59 E-value=4.1 Score=30.02 Aligned_cols=18 Identities=33% Similarity=0.508 Sum_probs=15.4
Q ss_pred CeeEEeeccCCCCCceee
Q psy12524 45 NACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 45 ~~~v~~yG~~~sGKt~t~ 62 (151)
...+..+|.+|||||..+
T Consensus 12 g~i~~i~G~~GsGKT~l~ 29 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNIC 29 (209)
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 457788999999999876
No 188
>PF06048 DUF927: Domain of unknown function (DUF927); InterPro: IPR009270 This entry is represented by Bacteriophage PT1028, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=65.34 E-value=6.7 Score=30.88 Aligned_cols=30 Identities=23% Similarity=0.362 Sum_probs=22.4
Q ss_pred HhHHHHHHhhcCCCeeEEeeccCCCCCceee
Q psy12524 32 LGRDILDNAFQGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 32 ~~~~lv~~~~~G~~~~v~~yG~~~sGKt~t~ 62 (151)
.+.||+ ..+.-.+..+-.||.+++|||.++
T Consensus 181 fa~pLL-~~l~~~~~~~hl~G~Ss~GKTt~~ 210 (286)
T PF06048_consen 181 FAAPLL-SLLGVEGFGFHLYGQSSSGKTTAL 210 (286)
T ss_pred HHHHHH-HHhCCCceEEEEEeCCCCCHHHHH
Confidence 335666 445566677888999999999877
No 189
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=65.31 E-value=6.1 Score=28.71 Aligned_cols=25 Identities=28% Similarity=0.495 Sum_probs=17.6
Q ss_pred HHHHhhcCCCeeEEeeccCCCCCceee
Q psy12524 36 ILDNAFQGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 36 lv~~~~~G~~~~v~~yG~~~sGKt~t~ 62 (151)
.++.++.|.+ ++..++||+|||.+.
T Consensus 29 ~~~~~~~~~~--~li~~~TG~GKT~~~ 53 (203)
T cd00268 29 AIPPLLSGRD--VIGQAQTGSGKTAAF 53 (203)
T ss_pred HHHHHhcCCc--EEEECCCCCcHHHHH
Confidence 3344555766 577789999999763
No 190
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=65.31 E-value=2.7 Score=33.21 Aligned_cols=20 Identities=35% Similarity=0.667 Sum_probs=17.7
Q ss_pred CCCeeEEeeccCCCCCceee
Q psy12524 43 GYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 43 G~~~~v~~yG~~~sGKt~t~ 62 (151)
|.+-+|+..|.+|+|||.-+
T Consensus 2 g~~fnImVvG~sG~GKTTFI 21 (281)
T PF00735_consen 2 GFNFNIMVVGESGLGKTTFI 21 (281)
T ss_dssp EEEEEEEEEECTTSSHHHHH
T ss_pred CceEEEEEECCCCCCHHHHH
Confidence 67789999999999999766
No 191
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=65.14 E-value=2.5 Score=35.06 Aligned_cols=40 Identities=25% Similarity=0.458 Sum_probs=26.5
Q ss_pred CeeEEeeccCCCCCceeecc------CC-----------CCCCcHHHHHHHHHHHHH
Q psy12524 45 NACIFAYGQTGSGKSYTMMG------SQ-----------DNKGIIPRLCDSLFDLIA 84 (151)
Q Consensus 45 ~~~v~~yG~~~sGKt~t~~G------~~-----------~~~Gli~~~~~~lf~~~~ 84 (151)
...++.||++|+|||..... .. ...|--.+.++++|....
T Consensus 179 pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~k~~ge~~~~lr~lf~~A~ 235 (398)
T PTZ00454 179 PRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQKYLGEGPRMVRDVFRLAR 235 (398)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHHHhcchhHHHHHHHHHHHH
Confidence 45689999999999988732 00 013444566777887654
No 192
>PTZ00424 helicase 45; Provisional
Probab=64.81 E-value=5.3 Score=32.43 Aligned_cols=26 Identities=27% Similarity=0.548 Sum_probs=19.2
Q ss_pred HHHHHhhcCCCeeEEeeccCCCCCceee
Q psy12524 35 DILDNAFQGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 35 ~lv~~~~~G~~~~v~~yG~~~sGKt~t~ 62 (151)
..+..+++|.+. +..++||||||...
T Consensus 57 ~ai~~i~~~~d~--ii~apTGsGKT~~~ 82 (401)
T PTZ00424 57 RGIKPILDGYDT--IGQAQSGTGKTATF 82 (401)
T ss_pred HHHHHHhCCCCE--EEECCCCChHHHHH
Confidence 445567788875 46789999999654
No 193
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=64.66 E-value=2.4 Score=27.92 Aligned_cols=15 Identities=33% Similarity=0.654 Sum_probs=13.3
Q ss_pred EEeeccCCCCCceee
Q psy12524 48 IFAYGQTGSGKSYTM 62 (151)
Q Consensus 48 v~~yG~~~sGKt~t~ 62 (151)
|+..|..|+|||..+
T Consensus 2 I~V~G~~g~GKTsLi 16 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLI 16 (119)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECcCCCCHHHHH
Confidence 578899999999887
No 194
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=64.43 E-value=3.9 Score=34.19 Aligned_cols=39 Identities=18% Similarity=0.292 Sum_probs=26.3
Q ss_pred CCHHHHHHHHhHHHHHHhhcCCCeeEEeeccCCCCCceee
Q psy12524 23 ASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 23 ~~q~~vy~~~~~~lv~~~~~G~~~~v~~yG~~~sGKt~t~ 62 (151)
..|+.+.-.- .++-.-+-.|.-.+.+.||+.|+|||...
T Consensus 27 vGQ~HLlg~~-~~lrr~v~~~~l~SmIl~GPPG~GKTTlA 65 (436)
T COG2256 27 VGQEHLLGEG-KPLRRAVEAGHLHSMILWGPPGTGKTTLA 65 (436)
T ss_pred cChHhhhCCC-chHHHHHhcCCCceeEEECCCCCCHHHHH
Confidence 4565555332 34433344577788899999999999765
No 195
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=64.31 E-value=5.6 Score=32.90 Aligned_cols=24 Identities=25% Similarity=0.515 Sum_probs=18.5
Q ss_pred HHHHhhcCCCeeEEeeccCCCCCcee
Q psy12524 36 ILDNAFQGYNACIFAYGQTGSGKSYT 61 (151)
Q Consensus 36 lv~~~~~G~~~~v~~yG~~~sGKt~t 61 (151)
.+..+++|.+ +++.++||||||..
T Consensus 31 ai~~~~~g~d--~l~~apTGsGKT~~ 54 (434)
T PRK11192 31 AIPPALDGRD--VLGSAPTGTGKTAA 54 (434)
T ss_pred HHHHHhCCCC--EEEECCCCChHHHH
Confidence 3455667776 67888999999975
No 196
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=64.16 E-value=7 Score=26.93 Aligned_cols=20 Identities=25% Similarity=0.414 Sum_probs=16.2
Q ss_pred CCCeeEEeeccCCCCCceee
Q psy12524 43 GYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 43 G~~~~v~~yG~~~sGKt~t~ 62 (151)
..+..|+.+|..||||++..
T Consensus 19 ~~~~pvli~GE~GtGK~~~A 38 (138)
T PF14532_consen 19 KSSSPVLITGEPGTGKSLLA 38 (138)
T ss_dssp CSSS-EEEECCTTSSHHHHH
T ss_pred CCCCcEEEEcCCCCCHHHHH
Confidence 56677899999999998875
No 197
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=64.10 E-value=3.4 Score=29.61 Aligned_cols=15 Identities=27% Similarity=0.414 Sum_probs=13.0
Q ss_pred EEeeccCCCCCceee
Q psy12524 48 IFAYGQTGSGKSYTM 62 (151)
Q Consensus 48 v~~yG~~~sGKt~t~ 62 (151)
++.+|.+|+|||...
T Consensus 2 ~li~G~~G~GKT~l~ 16 (187)
T cd01124 2 TLLSGGPGTGKTTFA 16 (187)
T ss_pred EEEEcCCCCCHHHHH
Confidence 578999999999866
No 198
>PRK06696 uridine kinase; Validated
Probab=64.07 E-value=9.8 Score=28.58 Aligned_cols=21 Identities=24% Similarity=0.078 Sum_probs=15.8
Q ss_pred cCCCeeEEeeccCCCCCceee
Q psy12524 42 QGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 42 ~G~~~~v~~yG~~~sGKt~t~ 62 (151)
.+....|..-|.+|||||...
T Consensus 19 ~~~~~iI~I~G~sgsGKSTlA 39 (223)
T PRK06696 19 LTRPLRVAIDGITASGKTTFA 39 (223)
T ss_pred CCCceEEEEECCCCCCHHHHH
Confidence 355556677799999999854
No 199
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=63.98 E-value=2.8 Score=29.16 Aligned_cols=15 Identities=47% Similarity=0.578 Sum_probs=12.7
Q ss_pred EEeeccCCCCCceee
Q psy12524 48 IFAYGQTGSGKSYTM 62 (151)
Q Consensus 48 v~~yG~~~sGKt~t~ 62 (151)
++..|.+|||||...
T Consensus 2 i~l~G~~GsGKST~a 16 (150)
T cd02021 2 IVVMGVSGSGKSTVG 16 (150)
T ss_pred EEEEcCCCCCHHHHH
Confidence 567899999998775
No 200
>PRK07261 topology modulation protein; Provisional
Probab=63.86 E-value=3.6 Score=29.74 Aligned_cols=15 Identities=47% Similarity=0.523 Sum_probs=12.9
Q ss_pred EEeeccCCCCCceee
Q psy12524 48 IFAYGQTGSGKSYTM 62 (151)
Q Consensus 48 v~~yG~~~sGKt~t~ 62 (151)
++..|.+|||||...
T Consensus 3 i~i~G~~GsGKSTla 17 (171)
T PRK07261 3 IAIIGYSGSGKSTLA 17 (171)
T ss_pred EEEEcCCCCCHHHHH
Confidence 677899999998766
No 201
>PRK10536 hypothetical protein; Provisional
Probab=63.84 E-value=3.2 Score=32.58 Aligned_cols=17 Identities=41% Similarity=0.761 Sum_probs=15.2
Q ss_pred eeEEeeccCCCCCceee
Q psy12524 46 ACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 46 ~~v~~yG~~~sGKt~t~ 62 (151)
..++..|..|||||+..
T Consensus 75 ~lV~i~G~aGTGKT~La 91 (262)
T PRK10536 75 QLIFATGEAGCGKTWIS 91 (262)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 47899999999999876
No 202
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=63.64 E-value=4.9 Score=34.18 Aligned_cols=23 Identities=17% Similarity=0.164 Sum_probs=17.3
Q ss_pred hhcCCC-eeEEeeccCCCCCceee
Q psy12524 40 AFQGYN-ACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 40 ~~~G~~-~~v~~yG~~~sGKt~t~ 62 (151)
+..|.- ..++.||+.|+|||.+.
T Consensus 30 i~~~~l~~~~Lf~GPpGtGKTTlA 53 (472)
T PRK14962 30 LKKNSISHAYIFAGPRGTGKTTVA 53 (472)
T ss_pred HHcCCCCeEEEEECCCCCCHHHHH
Confidence 334443 45789999999999877
No 203
>KOG0953|consensus
Probab=63.54 E-value=6.5 Score=34.35 Aligned_cols=40 Identities=25% Similarity=0.372 Sum_probs=30.2
Q ss_pred eEEeeccCCCCCceeeccC------CCCCCcHHHHHHHHHHHHHhh
Q psy12524 47 CIFAYGQTGSGKSYTMMGS------QDNKGIIPRLCDSLFDLIAKQ 86 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~~G~------~~~~Gli~~~~~~lf~~~~~~ 86 (151)
-++..|+|+|||||...-. .---|-+-..+.++|+..+..
T Consensus 193 Ii~H~GPTNSGKTy~ALqrl~~aksGvycGPLrLLA~EV~~r~na~ 238 (700)
T KOG0953|consen 193 IIMHVGPTNSGKTYRALQRLKSAKSGVYCGPLRLLAHEVYDRLNAL 238 (700)
T ss_pred EEEEeCCCCCchhHHHHHHHhhhccceecchHHHHHHHHHHHhhhc
Confidence 4788899999999998542 123577888888999887643
No 204
>cd01379 MYSc_type_III Myosin motor domain, type III myosins. Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the
Probab=63.47 E-value=7.8 Score=34.36 Aligned_cols=21 Identities=33% Similarity=0.634 Sum_probs=19.4
Q ss_pred cCCCeeEEeeccCCCCCceee
Q psy12524 42 QGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 42 ~G~~~~v~~yG~~~sGKt~t~ 62 (151)
.+.+.+++.-|.+|||||.+.
T Consensus 83 ~~~~QsIiisGESGsGKTet~ 103 (653)
T cd01379 83 YNQDQCIVISGESGSGKTESA 103 (653)
T ss_pred cCCCceEEEecCCCCCchHHH
Confidence 488999999999999999887
No 205
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=63.16 E-value=2.8 Score=34.72 Aligned_cols=18 Identities=33% Similarity=0.567 Sum_probs=15.0
Q ss_pred CeeEEeeccCCCCCceee
Q psy12524 45 NACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 45 ~~~v~~yG~~~sGKt~t~ 62 (151)
+.-++.+|.+|||||..+
T Consensus 42 ~~h~~i~g~tGsGKt~~i 59 (410)
T cd01127 42 EAHTMIIGTTGTGKTTQI 59 (410)
T ss_pred hccEEEEcCCCCCHHHHH
Confidence 346789999999999766
No 206
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=63.00 E-value=2.7 Score=35.42 Aligned_cols=17 Identities=29% Similarity=0.632 Sum_probs=14.6
Q ss_pred eeEEeeccCCCCCceee
Q psy12524 46 ACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 46 ~~v~~yG~~~sGKt~t~ 62 (151)
..++.||++|||||.+.
T Consensus 218 ~gVLL~GPPGTGKT~LA 234 (438)
T PTZ00361 218 KGVILYGPPGTGKTLLA 234 (438)
T ss_pred cEEEEECCCCCCHHHHH
Confidence 35788999999999886
No 207
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=62.87 E-value=6.6 Score=32.88 Aligned_cols=25 Identities=28% Similarity=0.535 Sum_probs=18.8
Q ss_pred HHHHhhcCCCeeEEeeccCCCCCceee
Q psy12524 36 ILDNAFQGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 36 lv~~~~~G~~~~v~~yG~~~sGKt~t~ 62 (151)
.+..+++|.+ +++..+||||||...
T Consensus 31 ai~~il~g~d--vlv~apTGsGKTla~ 55 (456)
T PRK10590 31 AIPAVLEGRD--LMASAQTGTGKTAGF 55 (456)
T ss_pred HHHHHhCCCC--EEEECCCCCcHHHHH
Confidence 4456677877 577789999999763
No 208
>PRK00131 aroK shikimate kinase; Reviewed
Probab=62.68 E-value=3.8 Score=28.84 Aligned_cols=17 Identities=35% Similarity=0.350 Sum_probs=14.7
Q ss_pred eeEEeeccCCCCCceee
Q psy12524 46 ACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 46 ~~v~~yG~~~sGKt~t~ 62 (151)
..++..|.+|||||...
T Consensus 5 ~~i~l~G~~GsGKstla 21 (175)
T PRK00131 5 PNIVLIGFMGAGKSTIG 21 (175)
T ss_pred CeEEEEcCCCCCHHHHH
Confidence 46889999999999875
No 209
>KOG0926|consensus
Probab=62.67 E-value=5.6 Score=36.31 Aligned_cols=19 Identities=37% Similarity=0.611 Sum_probs=16.4
Q ss_pred CCeeEEeeccCCCCCceee
Q psy12524 44 YNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 44 ~~~~v~~yG~~~sGKt~t~ 62 (151)
.|-.++.+|+||||||.-+
T Consensus 270 ~n~vvIIcGeTGsGKTTQv 288 (1172)
T KOG0926|consen 270 ENPVVIICGETGSGKTTQV 288 (1172)
T ss_pred cCCeEEEecCCCCCccccc
Confidence 4667889999999999877
No 210
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=62.44 E-value=4.9 Score=28.96 Aligned_cols=28 Identities=25% Similarity=0.342 Sum_probs=21.8
Q ss_pred HHHHHhhc-CCCeeEEeeccCCCCCceee
Q psy12524 35 DILDNAFQ-GYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 35 ~lv~~~~~-G~~~~v~~yG~~~sGKt~t~ 62 (151)
.++..+.. .....|+..|..+||||..+
T Consensus 3 ~~~~~~~~~~~~~~ililGl~~sGKTtll 31 (175)
T PF00025_consen 3 SVLSKLKSKKKEIKILILGLDGSGKTTLL 31 (175)
T ss_dssp HHHHHCTTTTSEEEEEEEESTTSSHHHHH
T ss_pred HHHHHhcccCcEEEEEEECCCccchHHHH
Confidence 45556654 67788999999999999755
No 211
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=62.11 E-value=9.8 Score=33.78 Aligned_cols=27 Identities=26% Similarity=0.273 Sum_probs=19.4
Q ss_pred HHHHhhcCCCeeEEeeccCCCCCceee
Q psy12524 36 ILDNAFQGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 36 lv~~~~~G~~~~v~~yG~~~sGKt~t~ 62 (151)
+..+.-++....++..|.||||||...
T Consensus 273 I~~d~~~~~~~~~Ll~~~TGSGKT~va 299 (681)
T PRK10917 273 ILADLASPKPMNRLLQGDVGSGKTVVA 299 (681)
T ss_pred HHHhhhccCCceEEEECCCCCcHHHHH
Confidence 334444455567899999999999765
No 212
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=62.07 E-value=3.6 Score=28.48 Aligned_cols=16 Identities=31% Similarity=0.397 Sum_probs=13.7
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
+|+..|.+|||||...
T Consensus 1 ~i~l~G~~GsGKstla 16 (154)
T cd00464 1 NIVLIGMMGAGKTTVG 16 (154)
T ss_pred CEEEEcCCCCCHHHHH
Confidence 4788999999999776
No 213
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=62.01 E-value=3.1 Score=32.78 Aligned_cols=16 Identities=25% Similarity=0.385 Sum_probs=14.2
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
-++.+|.+|||||+..
T Consensus 60 ~vll~G~pGTGKT~lA 75 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVA 75 (284)
T ss_pred eEEEEcCCCCCHHHHH
Confidence 5889999999999876
No 214
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=61.91 E-value=7.6 Score=32.44 Aligned_cols=37 Identities=27% Similarity=0.341 Sum_probs=24.0
Q ss_pred HHHHHHHhHHHHHHhhcC----CCeeEEeeccCCCCCceee
Q psy12524 26 EKVFDALGRDILDNAFQG----YNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 26 ~~vy~~~~~~lv~~~~~G----~~~~v~~yG~~~sGKt~t~ 62 (151)
...|......+..++.+- ....+...|+||.|||.|+
T Consensus 180 ~~~~~~~l~~~~~~~~~~~~~~~~~vi~LVGPTGVGKTTTl 220 (407)
T COG1419 180 LRYFSEKLRKLLLSLIENLIVEQKRVIALVGPTGVGKTTTL 220 (407)
T ss_pred hhhHHHHHHHHHHhhccccccccCcEEEEECCCCCcHHHHH
Confidence 444555544444444433 2556677799999999998
No 215
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=61.90 E-value=2.9 Score=36.82 Aligned_cols=17 Identities=29% Similarity=0.579 Sum_probs=14.8
Q ss_pred eEEeeccCCCCCceeec
Q psy12524 47 CIFAYGQTGSGKSYTMM 63 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~~ 63 (151)
.++..|++|||||+|+.
T Consensus 175 ~~lI~GpPGTGKT~t~~ 191 (637)
T TIGR00376 175 LFLIHGPPGTGKTRTLV 191 (637)
T ss_pred eEEEEcCCCCCHHHHHH
Confidence 46789999999999984
No 216
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=61.88 E-value=4.1 Score=29.23 Aligned_cols=15 Identities=40% Similarity=0.713 Sum_probs=13.0
Q ss_pred EEeeccCCCCCceee
Q psy12524 48 IFAYGQTGSGKSYTM 62 (151)
Q Consensus 48 v~~yG~~~sGKt~t~ 62 (151)
++.+|.+|||||...
T Consensus 2 i~i~G~pGsGKst~a 16 (183)
T TIGR01359 2 VFVLGGPGSGKGTQC 16 (183)
T ss_pred EEEECCCCCCHHHHH
Confidence 678999999998864
No 217
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=61.78 E-value=8 Score=33.94 Aligned_cols=27 Identities=26% Similarity=0.322 Sum_probs=18.6
Q ss_pred HHHHhhcCCCeeEEeeccCCCCCceee
Q psy12524 36 ILDNAFQGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 36 lv~~~~~G~~~~v~~yG~~~sGKt~t~ 62 (151)
+..+.-.......+..|.||||||...
T Consensus 247 I~~~~~~~~~~~~Ll~g~TGSGKT~va 273 (630)
T TIGR00643 247 ILQDLKSDVPMNRLLQGDVGSGKTLVA 273 (630)
T ss_pred HHHHhccCCCccEEEECCCCCcHHHHH
Confidence 333333344556799999999999864
No 218
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=61.72 E-value=8.1 Score=28.84 Aligned_cols=28 Identities=32% Similarity=0.614 Sum_probs=20.8
Q ss_pred HHHHHhhc-CC--CeeEEeeccCCCCCceee
Q psy12524 35 DILDNAFQ-GY--NACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 35 ~lv~~~~~-G~--~~~v~~yG~~~sGKt~t~ 62 (151)
+-++.++. |. ...+..+|.+|+|||..+
T Consensus 10 ~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~ 40 (225)
T PRK09361 10 KMLDELLGGGFERGTITQIYGPPGSGKTNIC 40 (225)
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 44567775 43 456788999999998876
No 219
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=61.63 E-value=3.2 Score=31.93 Aligned_cols=15 Identities=40% Similarity=0.667 Sum_probs=12.7
Q ss_pred EEeeccCCCCCceee
Q psy12524 48 IFAYGQTGSGKSYTM 62 (151)
Q Consensus 48 v~~yG~~~sGKt~t~ 62 (151)
+...|++|||||..+
T Consensus 31 v~iiGpSGSGKSTlL 45 (240)
T COG1126 31 VVIIGPSGSGKSTLL 45 (240)
T ss_pred EEEECCCCCCHHHHH
Confidence 366799999999877
No 220
>PRK08118 topology modulation protein; Reviewed
Probab=61.63 E-value=4.2 Score=29.32 Aligned_cols=15 Identities=47% Similarity=0.572 Sum_probs=12.7
Q ss_pred EEeeccCCCCCceee
Q psy12524 48 IFAYGQTGSGKSYTM 62 (151)
Q Consensus 48 v~~yG~~~sGKt~t~ 62 (151)
|+..|.+|||||...
T Consensus 4 I~I~G~~GsGKSTla 18 (167)
T PRK08118 4 IILIGSGGSGKSTLA 18 (167)
T ss_pred EEEECCCCCCHHHHH
Confidence 678999999999654
No 221
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=61.56 E-value=6.5 Score=32.48 Aligned_cols=25 Identities=28% Similarity=0.436 Sum_probs=18.1
Q ss_pred HHHHhhcCCCeeEEeeccCCCCCceee
Q psy12524 36 ILDNAFQGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 36 lv~~~~~G~~~~v~~yG~~~sGKt~t~ 62 (151)
.+..++.|.+. ++-++||||||...
T Consensus 38 aip~il~g~dv--i~~ApTGsGKTla~ 62 (423)
T PRK04837 38 ALPLTLAGRDV--AGQAQTGTGKTMAF 62 (423)
T ss_pred HHHHHhCCCcE--EEECCCCchHHHHH
Confidence 34456788774 66779999999753
No 222
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=61.50 E-value=6.1 Score=34.20 Aligned_cols=19 Identities=21% Similarity=0.576 Sum_probs=17.1
Q ss_pred hcCCCeeEEeeccCCCCCc
Q psy12524 41 FQGYNACIFAYGQTGSGKS 59 (151)
Q Consensus 41 ~~G~~~~v~~yG~~~sGKt 59 (151)
..+.+++|+..|.|||||-
T Consensus 264 ~A~tdstVLi~GESGTGKE 282 (560)
T COG3829 264 IAKTDSTVLILGESGTGKE 282 (560)
T ss_pred hcCCCCcEEEecCCCccHH
Confidence 5688999999999999994
No 223
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=61.20 E-value=12 Score=30.13 Aligned_cols=18 Identities=33% Similarity=0.508 Sum_probs=14.8
Q ss_pred CeeEEeeccCCCCCceee
Q psy12524 45 NACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 45 ~~~v~~yG~~~sGKt~t~ 62 (151)
...+...|.+|+|||.|+
T Consensus 114 ~~vi~lvGpnGsGKTTt~ 131 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTI 131 (318)
T ss_pred CeEEEEECCCCCcHHHHH
Confidence 345667799999999988
No 224
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=61.13 E-value=7.4 Score=30.96 Aligned_cols=28 Identities=32% Similarity=0.428 Sum_probs=19.8
Q ss_pred HHHHHHhhcCCCeeEEeeccCCCCCceee
Q psy12524 34 RDILDNAFQGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 34 ~~lv~~~~~G~~~~v~~yG~~~sGKt~t~ 62 (151)
..+++..+.+. .+++..|.+|||||..+
T Consensus 134 ~~~l~~~v~~~-~~ili~G~tGsGKTTll 161 (308)
T TIGR02788 134 KEFLRLAIASR-KNIIISGGTGSGKTTFL 161 (308)
T ss_pred HHHHHHHhhCC-CEEEEECCCCCCHHHHH
Confidence 44555555433 46778899999999877
No 225
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=61.12 E-value=3.6 Score=30.80 Aligned_cols=16 Identities=50% Similarity=0.569 Sum_probs=14.0
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
.|+..|.+||||+.+.
T Consensus 2 ~IlllG~tGsGKSs~~ 17 (212)
T PF04548_consen 2 RILLLGKTGSGKSSLG 17 (212)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 6889999999999765
No 226
>KOG0726|consensus
Probab=61.10 E-value=4.5 Score=32.82 Aligned_cols=41 Identities=27% Similarity=0.498 Sum_probs=29.8
Q ss_pred eEEeeccCCCCCceeecc--------------CC---CCCCcHHHHHHHHHHHHHhhc
Q psy12524 47 CIFAYGQTGSGKSYTMMG--------------SQ---DNKGIIPRLCDSLFDLIAKQE 87 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~~G--------------~~---~~~Gli~~~~~~lf~~~~~~~ 87 (151)
-|+.||..|+|||-.... +. ...|==|+.+++||+..+.+.
T Consensus 221 GVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQkylGdGpklvRqlF~vA~e~a 278 (440)
T KOG0726|consen 221 GVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHA 278 (440)
T ss_pred eeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHHHHhccchHHHHHHHHHHHhcC
Confidence 589999999999866532 11 124566899999999877554
No 227
>PRK14974 cell division protein FtsY; Provisional
Probab=60.98 E-value=14 Score=30.05 Aligned_cols=18 Identities=33% Similarity=0.519 Sum_probs=15.4
Q ss_pred CeeEEeeccCCCCCceee
Q psy12524 45 NACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 45 ~~~v~~yG~~~sGKt~t~ 62 (151)
...+...|.+|+|||.|+
T Consensus 140 ~~vi~~~G~~GvGKTTti 157 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTI 157 (336)
T ss_pred CeEEEEEcCCCCCHHHHH
Confidence 457788899999999977
No 228
>PHA02653 RNA helicase NPH-II; Provisional
Probab=60.89 E-value=10 Score=33.72 Aligned_cols=33 Identities=21% Similarity=0.225 Sum_probs=21.4
Q ss_pred CCHHHHHHHHhHHHHHHhhcCCCeeEEeeccCCCCCcee
Q psy12524 23 ASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYT 61 (151)
Q Consensus 23 ~~q~~vy~~~~~~lv~~~~~G~~~~v~~yG~~~sGKt~t 61 (151)
.-|.++-+.+ +..+.+|.+ +++.|+||||||..
T Consensus 163 ~~~~~iQ~qi----l~~i~~gkd--vIv~A~TGSGKTtq 195 (675)
T PHA02653 163 SLQPDVQLKI----FEAWISRKP--VVLTGGTGVGKTSQ 195 (675)
T ss_pred chhHHHHHHH----HHHHHhCCC--EEEECCCCCCchhH
Confidence 3444444433 344555654 58899999999975
No 229
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=60.76 E-value=6.7 Score=32.09 Aligned_cols=35 Identities=31% Similarity=0.324 Sum_probs=22.7
Q ss_pred CHHHHHHHHhHHHHHHhhcCCCeeEEeeccCCCCCceee
Q psy12524 24 SQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 24 ~q~~vy~~~~~~lv~~~~~G~~~~v~~yG~~~sGKt~t~ 62 (151)
.|+++=...+. .+.+..-+.++..|.+|||||+.+
T Consensus 21 Gq~~~k~al~~----~~~~p~~~~vli~G~~GtGKs~~a 55 (350)
T CHL00081 21 GQEEMKLALIL----NVIDPKIGGVMIMGDRGTGKSTTI 55 (350)
T ss_pred ChHHHHHHHHH----hccCCCCCeEEEEcCCCCCHHHHH
Confidence 55554444333 333323345889999999999988
No 230
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=60.75 E-value=7.9 Score=31.30 Aligned_cols=27 Identities=19% Similarity=0.309 Sum_probs=19.0
Q ss_pred HHHHhhcCC-CeeEEeeccCCCCCceee
Q psy12524 36 ILDNAFQGY-NACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 36 lv~~~~~G~-~~~v~~yG~~~sGKt~t~ 62 (151)
+.+.+-.|. ...++-||+.|+|||.+.
T Consensus 29 l~~~i~~~~~~~~~L~~G~~G~GKt~~a 56 (367)
T PRK14970 29 LLNAIENNHLAQALLFCGPRGVGKTTCA 56 (367)
T ss_pred HHHHHHcCCCCeEEEEECCCCCCHHHHH
Confidence 333444454 447889999999999766
No 231
>PHA01747 putative ATP-dependent protease
Probab=60.74 E-value=6.4 Score=32.74 Aligned_cols=31 Identities=16% Similarity=0.209 Sum_probs=25.5
Q ss_pred HhHHHHHHhhcCCCeeEEeeccCCCCCceee
Q psy12524 32 LGRDILDNAFQGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 32 ~~~~lv~~~~~G~~~~v~~yG~~~sGKt~t~ 62 (151)
-+-|+++.-..+.|..++=.|+.||||||+.
T Consensus 177 RLiPlVE~~~~~~NyNliELgPRGTGKS~~f 207 (425)
T PHA01747 177 RLLPLFTSPVSKRPVHIIELSNRGTGKTTTF 207 (425)
T ss_pred hhhhheeccCCCCCeeEEEecCCCCChhhHH
Confidence 3357777555788999999999999999987
No 232
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=60.73 E-value=3.4 Score=29.65 Aligned_cols=16 Identities=31% Similarity=0.669 Sum_probs=13.9
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
.++..|.+|||||..+
T Consensus 3 ~~~i~G~sGsGKttl~ 18 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLL 18 (179)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678899999999887
No 233
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=60.72 E-value=9.8 Score=32.79 Aligned_cols=25 Identities=20% Similarity=0.311 Sum_probs=19.1
Q ss_pred HHhhcCCCeeEEeeccCCCCCceee
Q psy12524 38 DNAFQGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 38 ~~~~~G~~~~v~~yG~~~sGKt~t~ 62 (151)
..+.......++.||++|+|||...
T Consensus 79 ~al~~~~~~~vLi~Ge~GtGKt~lA 103 (531)
T TIGR02902 79 AALCGPNPQHVIIYGPPGVGKTAAA 103 (531)
T ss_pred HHHhCCCCceEEEECCCCCCHHHHH
Confidence 3345556677889999999998765
No 234
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=60.54 E-value=5.5 Score=37.51 Aligned_cols=30 Identities=23% Similarity=0.354 Sum_probs=19.7
Q ss_pred HHHHHHhhcCCCeeEEeeccCCCCCceeecc
Q psy12524 34 RDILDNAFQGYNACIFAYGQTGSGKSYTMMG 64 (151)
Q Consensus 34 ~~lv~~~~~G~~~~v~~yG~~~sGKt~t~~G 64 (151)
..+.+.+..|... .+....||||||+|+..
T Consensus 423 ~ai~~a~~~g~r~-~Ll~maTGSGKT~tai~ 452 (1123)
T PRK11448 423 QAVEKAIVEGQRE-ILLAMATGTGKTRTAIA 452 (1123)
T ss_pred HHHHHHHHhccCC-eEEEeCCCCCHHHHHHH
Confidence 3444555556554 34457999999999854
No 235
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=60.49 E-value=6.9 Score=29.09 Aligned_cols=28 Identities=29% Similarity=0.427 Sum_probs=20.4
Q ss_pred HHHHHhhc-CC--CeeEEeeccCCCCCceee
Q psy12524 35 DILDNAFQ-GY--NACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 35 ~lv~~~~~-G~--~~~v~~yG~~~sGKt~t~ 62 (151)
+-++.++. |. ...+..+|.+|+|||..+
T Consensus 6 ~~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~ 36 (226)
T cd01393 6 KALDELLGGGIPTGRITEIFGEFGSGKTQLC 36 (226)
T ss_pred HHHHHHhCCCCcCCcEEEEeCCCCCChhHHH
Confidence 44566665 43 446778899999999876
No 236
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=60.46 E-value=8.2 Score=31.41 Aligned_cols=35 Identities=23% Similarity=0.320 Sum_probs=22.3
Q ss_pred CHHHHHHHHhHHHHHHhhcC-CCeeEEeeccCCCCCceee
Q psy12524 24 SQEKVFDALGRDILDNAFQG-YNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 24 ~q~~vy~~~~~~lv~~~~~G-~~~~v~~yG~~~sGKt~t~ 62 (151)
.|+.+-+. +.+.+..| ..-+++.+|+.|+|||.++
T Consensus 20 Gq~~~~~~----l~~~~~~~~~~h~~L~~Gp~G~GKTtla 55 (363)
T PRK14961 20 GQKHIVTA----ISNGLSLGRIHHAWLLSGTRGVGKTTIA 55 (363)
T ss_pred ChHHHHHH----HHHHHHcCCCCeEEEEecCCCCCHHHHH
Confidence 45554433 33333344 3456789999999999866
No 237
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=60.41 E-value=3.5 Score=32.68 Aligned_cols=14 Identities=43% Similarity=0.705 Sum_probs=12.1
Q ss_pred EeeccCCCCCceee
Q psy12524 49 FAYGQTGSGKSYTM 62 (151)
Q Consensus 49 ~~yG~~~sGKt~t~ 62 (151)
...|++|||||.||
T Consensus 31 vliGpSGsGKTTtL 44 (309)
T COG1125 31 VLIGPSGSGKTTTL 44 (309)
T ss_pred EEECCCCCcHHHHH
Confidence 44599999999998
No 238
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=60.01 E-value=14 Score=31.22 Aligned_cols=19 Identities=37% Similarity=0.457 Sum_probs=16.2
Q ss_pred CeeEEeeccCCCCCceeec
Q psy12524 45 NACIFAYGQTGSGKSYTMM 63 (151)
Q Consensus 45 ~~~v~~yG~~~sGKt~t~~ 63 (151)
...++.+|.+|+|||.|+.
T Consensus 95 p~vI~lvG~~GsGKTTtaa 113 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAA 113 (437)
T ss_pred CeEEEEECCCCCcHHHHHH
Confidence 4578888999999999983
No 239
>PHA02624 large T antigen; Provisional
Probab=60.01 E-value=9.5 Score=33.68 Aligned_cols=28 Identities=25% Similarity=0.251 Sum_probs=21.5
Q ss_pred HHHHHhhcCCCe--eEEeeccCCCCCceee
Q psy12524 35 DILDNAFQGYNA--CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 35 ~lv~~~~~G~~~--~v~~yG~~~sGKt~t~ 62 (151)
..++.++.|..- +++-||+.+||||...
T Consensus 419 ~~lk~~l~giPKk~~il~~GPpnTGKTtf~ 448 (647)
T PHA02624 419 DILKLIVENVPKRRYWLFKGPVNSGKTTLA 448 (647)
T ss_pred HHHHHHHhcCCCCeEEEEECCCCCCHHHHH
Confidence 345566666654 8999999999999876
No 240
>CHL00181 cbbX CbbX; Provisional
Probab=59.78 E-value=4 Score=32.24 Aligned_cols=16 Identities=25% Similarity=0.374 Sum_probs=14.0
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
.++.+|.+|+|||+..
T Consensus 61 ~ill~G~pGtGKT~lA 76 (287)
T CHL00181 61 HMSFTGSPGTGKTTVA 76 (287)
T ss_pred eEEEECCCCCCHHHHH
Confidence 3788999999999877
No 241
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=59.74 E-value=6.5 Score=31.91 Aligned_cols=28 Identities=25% Similarity=0.389 Sum_probs=21.2
Q ss_pred HHHHHHhhcCCCeeEEeeccCCCCCceee
Q psy12524 34 RDILDNAFQGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 34 ~~lv~~~~~G~~~~v~~yG~~~sGKt~t~ 62 (151)
..++..++.+ ..+++..|.+|||||.++
T Consensus 168 ~~~L~~~v~~-~~~ili~G~tGsGKTTll 195 (340)
T TIGR03819 168 ARLLRAIVAA-RLAFLISGGTGSGKTTLL 195 (340)
T ss_pred HHHHHHHHhC-CCeEEEECCCCCCHHHHH
Confidence 4556666654 367899999999999877
No 242
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=59.66 E-value=8.3 Score=34.17 Aligned_cols=31 Identities=23% Similarity=0.393 Sum_probs=20.7
Q ss_pred HhHHHHHHhhc-----CCCeeEEeeccCCCCCceeec
Q psy12524 32 LGRDILDNAFQ-----GYNACIFAYGQTGSGKSYTMM 63 (151)
Q Consensus 32 ~~~~lv~~~~~-----G~~~~v~~yG~~~sGKt~t~~ 63 (151)
.+..+++++.. |.... +.+-.||||||.||.
T Consensus 246 av~~~~~~~~~~~~~~~~~~g-li~~~TGsGKT~t~~ 281 (667)
T TIGR00348 246 AVKKIVESITRKTWGKDERGG-LIWHTQGSGKTLTML 281 (667)
T ss_pred HHHHHHHHHHhcccCCCCcee-EEEEecCCCccHHHH
Confidence 34566677665 33333 455599999999994
No 243
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=59.60 E-value=8 Score=29.15 Aligned_cols=28 Identities=32% Similarity=0.479 Sum_probs=20.2
Q ss_pred HHHHHhhc-CC--CeeEEeeccCCCCCceee
Q psy12524 35 DILDNAFQ-GY--NACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 35 ~lv~~~~~-G~--~~~v~~yG~~~sGKt~t~ 62 (151)
+-++.++. |. ...++.+|.+|+|||...
T Consensus 12 ~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~ 42 (234)
T PRK06067 12 EELDRKLGGGIPFPSLILIEGDHGTGKSVLS 42 (234)
T ss_pred HHHHHhhCCCCcCCcEEEEECCCCCChHHHH
Confidence 44566665 43 567788899999997665
No 244
>KOG2228|consensus
Probab=59.44 E-value=17 Score=29.96 Aligned_cols=54 Identities=17% Similarity=0.297 Sum_probs=37.0
Q ss_pred HHHHH-HhhcCCCeeEEeeccCCCCCceeecc---C----CC------CCCcHHH---HHHHHHHHHHhhc
Q psy12524 34 RDILD-NAFQGYNACIFAYGQTGSGKSYTMMG---S----QD------NKGIIPR---LCDSLFDLIAKQE 87 (151)
Q Consensus 34 ~~lv~-~~~~G~~~~v~~yG~~~sGKt~t~~G---~----~~------~~Gli~~---~~~~lf~~~~~~~ 87 (151)
..+++ .++.|.+-+++..|+.|||||..+-- . .+ =.|.+.- +++.|-.+++...
T Consensus 37 ~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~al~~I~rql~~e~ 107 (408)
T KOG2228|consen 37 SELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIALKGITRQLALEL 107 (408)
T ss_pred HHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHHHHHHHHHHHHHH
Confidence 34444 47789999999999999999998722 1 01 1466666 7777776665443
No 245
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=59.36 E-value=4.3 Score=31.83 Aligned_cols=21 Identities=33% Similarity=0.621 Sum_probs=18.4
Q ss_pred cCCCeeEEeeccCCCCCceee
Q psy12524 42 QGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 42 ~G~~~~v~~yG~~~sGKt~t~ 62 (151)
.|..-.|+..|.+|+|||..+
T Consensus 1 ~g~~f~I~vvG~sg~GKSTli 21 (276)
T cd01850 1 KGFQFNIMVVGESGLGKSTFI 21 (276)
T ss_pred CCcEEEEEEEcCCCCCHHHHH
Confidence 377889999999999999776
No 246
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=59.28 E-value=4.1 Score=27.55 Aligned_cols=17 Identities=24% Similarity=0.411 Sum_probs=14.0
Q ss_pred eeEEeeccCCCCCceee
Q psy12524 46 ACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 46 ~~v~~yG~~~sGKt~t~ 62 (151)
..+...|++|||||.++
T Consensus 16 e~v~I~GpSGsGKSTLl 32 (107)
T cd00820 16 VGVLITGDSGIGKTELA 32 (107)
T ss_pred EEEEEEcCCCCCHHHHH
Confidence 45677899999999877
No 247
>PRK10865 protein disaggregation chaperone; Provisional
Probab=59.05 E-value=10 Score=34.61 Aligned_cols=17 Identities=29% Similarity=0.436 Sum_probs=14.9
Q ss_pred eeEEeeccCCCCCceee
Q psy12524 46 ACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 46 ~~v~~yG~~~sGKt~t~ 62 (151)
..++..|++|+|||++.
T Consensus 599 ~~~Lf~Gp~G~GKT~lA 615 (857)
T PRK10865 599 GSFLFLGPTGVGKTELC 615 (857)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 46788899999999977
No 248
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=58.84 E-value=3.5 Score=35.44 Aligned_cols=17 Identities=29% Similarity=0.638 Sum_probs=14.3
Q ss_pred eeEEeeccCCCCCceee
Q psy12524 46 ACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 46 ~~v~~yG~~~sGKt~t~ 62 (151)
-.++.||++|+|||.+.
T Consensus 217 ~GILLyGPPGTGKT~LA 233 (512)
T TIGR03689 217 KGVLLYGPPGCGKTLIA 233 (512)
T ss_pred cceEEECCCCCcHHHHH
Confidence 35889999999999755
No 249
>CHL00195 ycf46 Ycf46; Provisional
Probab=58.83 E-value=3.8 Score=35.02 Aligned_cols=40 Identities=18% Similarity=0.176 Sum_probs=26.7
Q ss_pred CeeEEeeccCCCCCceeecc------C-----------CCCCCcHHHHHHHHHHHHH
Q psy12524 45 NACIFAYGQTGSGKSYTMMG------S-----------QDNKGIIPRLCDSLFDLIA 84 (151)
Q Consensus 45 ~~~v~~yG~~~sGKt~t~~G------~-----------~~~~Gli~~~~~~lf~~~~ 84 (151)
.-.++.||+.|||||.+... - ....|--...++.+|+..+
T Consensus 259 pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~vGese~~l~~~f~~A~ 315 (489)
T CHL00195 259 PRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGIVGESESRMRQMIRIAE 315 (489)
T ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccccChHHHHHHHHHHHHH
Confidence 34689999999999977622 0 0123555667778887654
No 250
>PRK06217 hypothetical protein; Validated
Probab=58.32 E-value=5 Score=29.13 Aligned_cols=15 Identities=33% Similarity=0.432 Sum_probs=12.9
Q ss_pred EEeeccCCCCCceee
Q psy12524 48 IFAYGQTGSGKSYTM 62 (151)
Q Consensus 48 v~~yG~~~sGKt~t~ 62 (151)
|+..|.+|||||...
T Consensus 4 I~i~G~~GsGKSTla 18 (183)
T PRK06217 4 IHITGASGSGTTTLG 18 (183)
T ss_pred EEEECCCCCCHHHHH
Confidence 778899999998655
No 251
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=58.26 E-value=4.1 Score=34.36 Aligned_cols=20 Identities=35% Similarity=0.591 Sum_probs=16.4
Q ss_pred CeeEEeeccCCCCCceeecc
Q psy12524 45 NACIFAYGQTGSGKSYTMMG 64 (151)
Q Consensus 45 ~~~v~~yG~~~sGKt~t~~G 64 (151)
+..++-.|++|+||||...+
T Consensus 209 ~~Nli~lGp~GTGKThla~~ 228 (449)
T TIGR02688 209 NYNLIELGPKGTGKSYIYNN 228 (449)
T ss_pred CCcEEEECCCCCCHHHHHHH
Confidence 44568899999999998854
No 252
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=58.00 E-value=6.3 Score=32.14 Aligned_cols=16 Identities=25% Similarity=0.532 Sum_probs=13.7
Q ss_pred EEeeccCCCCCceeec
Q psy12524 48 IFAYGQTGSGKSYTMM 63 (151)
Q Consensus 48 v~~yG~~~sGKt~t~~ 63 (151)
++..|.+|||||..+.
T Consensus 2 ~lv~g~tGsGKt~~~v 17 (384)
T cd01126 2 VLVFAPTRSGKGVGFV 17 (384)
T ss_pred eeEecCCCCCCccEEE
Confidence 5788999999998874
No 253
>KOG0652|consensus
Probab=57.97 E-value=5.1 Score=32.01 Aligned_cols=16 Identities=31% Similarity=0.725 Sum_probs=13.8
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
-++.||+.|+|||-..
T Consensus 207 GvLmYGPPGTGKTlmA 222 (424)
T KOG0652|consen 207 GVLMYGPPGTGKTLMA 222 (424)
T ss_pred ceEeeCCCCCcHHHHH
Confidence 5899999999998654
No 254
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=57.95 E-value=7.3 Score=29.86 Aligned_cols=36 Identities=17% Similarity=0.186 Sum_probs=22.0
Q ss_pred EEeeccCCCCCceeec------cC-----CCCCCcHHHHHHHHHHHH
Q psy12524 48 IFAYGQTGSGKSYTMM------GS-----QDNKGIIPRLCDSLFDLI 83 (151)
Q Consensus 48 v~~yG~~~sGKt~t~~------G~-----~~~~Gli~~~~~~lf~~~ 83 (151)
-..+|++|||||.|+. |. ..++++=...+..||..+
T Consensus 35 ~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~~~~l~ril~G~ 81 (231)
T PF12774_consen 35 GALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMDYQSLSRILKGL 81 (231)
T ss_dssp EEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-HHHHHHHHHHH
T ss_pred CCCcCCCCCCchhHHHHHHHHhCCeEEEecccccccHHHHHHHHHHH
Confidence 3579999999999983 32 124455555555555444
No 255
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=57.72 E-value=7 Score=32.19 Aligned_cols=21 Identities=29% Similarity=0.563 Sum_probs=18.8
Q ss_pred cCCCeeEEeeccCCCCCceee
Q psy12524 42 QGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 42 ~G~~~~v~~yG~~~sGKt~t~ 62 (151)
.|+.-+|++.|++|+|||.-+
T Consensus 20 ~Gi~f~im~~G~sG~GKttfi 40 (373)
T COG5019 20 KGIDFTIMVVGESGLGKTTFI 40 (373)
T ss_pred cCCceEEEEecCCCCchhHHH
Confidence 499999999999999998654
No 256
>PF13173 AAA_14: AAA domain
Probab=57.33 E-value=4.4 Score=27.59 Aligned_cols=16 Identities=31% Similarity=0.491 Sum_probs=14.4
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
.++.+|+.++|||..+
T Consensus 4 ~~~l~G~R~vGKTtll 19 (128)
T PF13173_consen 4 IIILTGPRGVGKTTLL 19 (128)
T ss_pred eEEEECCCCCCHHHHH
Confidence 5788999999999988
No 257
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=57.07 E-value=8.1 Score=33.12 Aligned_cols=19 Identities=32% Similarity=0.581 Sum_probs=15.6
Q ss_pred eeEEeeccCCCCCceeecc
Q psy12524 46 ACIFAYGQTGSGKSYTMMG 64 (151)
Q Consensus 46 ~~v~~yG~~~sGKt~t~~G 64 (151)
..+..+|++|||||..+.+
T Consensus 33 Eiv~L~G~SGsGKSTLLr~ 51 (504)
T TIGR03238 33 SLLFLCGSSGDGKSEILAE 51 (504)
T ss_pred CEEEEECCCCCCHHHHHhc
Confidence 4567889999999998863
No 258
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=56.89 E-value=5.1 Score=35.18 Aligned_cols=20 Identities=20% Similarity=0.328 Sum_probs=16.2
Q ss_pred CeeEEeeccCCCCCceeecc
Q psy12524 45 NACIFAYGQTGSGKSYTMMG 64 (151)
Q Consensus 45 ~~~v~~yG~~~sGKt~t~~G 64 (151)
...++..|..|||||.+|..
T Consensus 14 ~~~~~V~Ag~GSGKT~~L~~ 33 (664)
T TIGR01074 14 TGPCLVLAGAGSGKTRVITN 33 (664)
T ss_pred CCCEEEEecCCCCHHHHHHH
Confidence 44577889999999999943
No 259
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=56.74 E-value=5.7 Score=28.64 Aligned_cols=15 Identities=40% Similarity=0.616 Sum_probs=12.9
Q ss_pred EEeeccCCCCCceee
Q psy12524 48 IFAYGQTGSGKSYTM 62 (151)
Q Consensus 48 v~~yG~~~sGKt~t~ 62 (151)
|+..|..|||||...
T Consensus 2 I~i~G~pGsGKst~a 16 (194)
T cd01428 2 ILLLGPPGSGKGTQA 16 (194)
T ss_pred EEEECCCCCCHHHHH
Confidence 678999999998665
No 260
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=56.73 E-value=6 Score=29.59 Aligned_cols=26 Identities=31% Similarity=0.538 Sum_probs=19.2
Q ss_pred HHHhhc-CC--CeeEEeeccCCCCCceee
Q psy12524 37 LDNAFQ-GY--NACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 37 v~~~~~-G~--~~~v~~yG~~~sGKt~t~ 62 (151)
++.++. |. +.+++..|.+|||||...
T Consensus 8 LD~~l~GGip~gs~~li~G~~GsGKT~l~ 36 (226)
T PF06745_consen 8 LDELLGGGIPKGSVVLISGPPGSGKTTLA 36 (226)
T ss_dssp HHHHTTTSEETTSEEEEEESTTSSHHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCCcHHHH
Confidence 455553 33 667899999999998665
No 261
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=56.66 E-value=4.1 Score=27.31 Aligned_cols=16 Identities=31% Similarity=0.376 Sum_probs=13.8
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
-|...|.+|+|||..+
T Consensus 3 ki~~~G~~~~GKstl~ 18 (161)
T TIGR00231 3 KIVIVGDPNVGKSTLL 18 (161)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678899999999876
No 262
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=56.59 E-value=9.9 Score=30.28 Aligned_cols=24 Identities=21% Similarity=0.279 Sum_probs=17.6
Q ss_pred HhhcCC-CeeEEeeccCCCCCceee
Q psy12524 39 NAFQGY-NACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 39 ~~~~G~-~~~v~~yG~~~sGKt~t~ 62 (151)
.+-.|. ...++.||+.|+|||.+.
T Consensus 29 ~~~~~~~~~~~Ll~G~~G~GKt~~a 53 (355)
T TIGR02397 29 AIKNGRIAHAYLFSGPRGTGKTSIA 53 (355)
T ss_pred HHHcCCCCeEEEEECCCCCCHHHHH
Confidence 333454 446789999999999766
No 263
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=56.57 E-value=7.5 Score=30.73 Aligned_cols=28 Identities=32% Similarity=0.463 Sum_probs=20.5
Q ss_pred HHHHHhhc-CC--CeeEEeeccCCCCCceee
Q psy12524 35 DILDNAFQ-GY--NACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 35 ~lv~~~~~-G~--~~~v~~yG~~~sGKt~t~ 62 (151)
+-++.++. |. ...+..+|.+|+|||..+
T Consensus 82 ~~lD~~l~GGi~~g~i~ei~G~~g~GKT~l~ 112 (310)
T TIGR02236 82 KELDELLGGGIETQAITEVFGEFGSGKTQIC 112 (310)
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 45666766 32 445679999999999875
No 264
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=56.52 E-value=4 Score=28.78 Aligned_cols=14 Identities=43% Similarity=0.525 Sum_probs=11.3
Q ss_pred EeeccCCCCCceee
Q psy12524 49 FAYGQTGSGKSYTM 62 (151)
Q Consensus 49 ~~yG~~~sGKt~t~ 62 (151)
+..|.+|||||...
T Consensus 2 ~l~G~~GsGKSTla 15 (163)
T TIGR01313 2 VLMGVAGSGKSTIA 15 (163)
T ss_pred EEECCCCCCHHHHH
Confidence 46799999998664
No 265
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=56.22 E-value=12 Score=27.75 Aligned_cols=27 Identities=30% Similarity=0.486 Sum_probs=20.0
Q ss_pred HHHHhhc-CC--CeeEEeeccCCCCCceee
Q psy12524 36 ILDNAFQ-GY--NACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 36 lv~~~~~-G~--~~~v~~yG~~~sGKt~t~ 62 (151)
-++.++. |. ...+..+|.+|||||..+
T Consensus 7 ~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~ 36 (218)
T cd01394 7 GLDELLGGGVERGTVTQVYGPPGTGKTNIA 36 (218)
T ss_pred HHHHHhcCCccCCeEEEEECCCCCCHHHHH
Confidence 3566665 44 345789999999999876
No 266
>KOG0729|consensus
Probab=55.81 E-value=6.5 Score=31.52 Aligned_cols=51 Identities=25% Similarity=0.464 Sum_probs=31.4
Q ss_pred HHHHHH--hh-cCCCe--eEEeeccCCCCCceeec--------------cCC---CCCCcHHHHHHHHHHHHH
Q psy12524 34 RDILDN--AF-QGYNA--CIFAYGQTGSGKSYTMM--------------GSQ---DNKGIIPRLCDSLFDLIA 84 (151)
Q Consensus 34 ~~lv~~--~~-~G~~~--~v~~yG~~~sGKt~t~~--------------G~~---~~~Gli~~~~~~lf~~~~ 84 (151)
.|++.. +. -|..- -|+.||+.|+|||-... |+. ...|-=.|.+++||++..
T Consensus 195 ~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigselvqkyvgegarmvrelf~mar 267 (435)
T KOG0729|consen 195 LPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMAR 267 (435)
T ss_pred ccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHHHHHhhhhHHHHHHHHHHhc
Confidence 455532 33 36543 58999999999987552 221 112444577888887654
No 267
>KOG0354|consensus
Probab=55.63 E-value=9.8 Score=34.20 Aligned_cols=25 Identities=36% Similarity=0.616 Sum_probs=20.1
Q ss_pred HHHHHhhcCCCeeEEeeccCCCCCceee
Q psy12524 35 DILDNAFQGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 35 ~lv~~~~~G~~~~v~~yG~~~sGKt~t~ 62 (151)
.+++.++ |.|+.|.+ +||+|||+..
T Consensus 69 eivq~AL-gkNtii~l--PTG~GKTfIA 93 (746)
T KOG0354|consen 69 ELVQPAL-GKNTIIAL--PTGSGKTFIA 93 (746)
T ss_pred HHhHHhh-cCCeEEEe--ecCCCccchH
Confidence 5778888 99985544 8999999876
No 268
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=55.63 E-value=4.8 Score=32.99 Aligned_cols=18 Identities=28% Similarity=0.637 Sum_probs=15.9
Q ss_pred CeeEEeeccCCCCCceee
Q psy12524 45 NACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 45 ~~~v~~yG~~~sGKt~t~ 62 (151)
.--+..||..|.|||+.|
T Consensus 62 ~~GlYl~G~vG~GKT~Lm 79 (362)
T PF03969_consen 62 PKGLYLWGPVGRGKTMLM 79 (362)
T ss_pred CceEEEECCCCCchhHHH
Confidence 346899999999999998
No 269
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=55.51 E-value=6.3 Score=28.20 Aligned_cols=16 Identities=44% Similarity=0.623 Sum_probs=13.5
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
.++..|.+|||||..+
T Consensus 5 ii~i~G~~GsGKsTl~ 20 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQC 20 (188)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4667899999999876
No 270
>KOG1532|consensus
Probab=55.49 E-value=11 Score=30.29 Aligned_cols=19 Identities=37% Similarity=0.489 Sum_probs=16.6
Q ss_pred CCeeEEeeccCCCCCceee
Q psy12524 44 YNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 44 ~~~~v~~yG~~~sGKt~t~ 62 (151)
..+++++.|..|||||.-+
T Consensus 18 ~p~~ilVvGMAGSGKTTF~ 36 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFM 36 (366)
T ss_pred CCcEEEEEecCCCCchhHH
Confidence 4678999999999999766
No 271
>PRK14531 adenylate kinase; Provisional
Probab=55.32 E-value=6.3 Score=28.63 Aligned_cols=16 Identities=25% Similarity=0.461 Sum_probs=13.5
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
-++..|.+|||||...
T Consensus 4 ~i~i~G~pGsGKsT~~ 19 (183)
T PRK14531 4 RLLFLGPPGAGKGTQA 19 (183)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788999999998765
No 272
>TIGR03744 traC_PFL_4706 conjugative transfer ATPase, PFL_4706 family. Members of this protein family are predicted ATP-binding proteins apparently associated with DNA conjugal transfer. Members are found both in plasmids and in bacterial chromosomal regions that appear to derive from integrative elements such as conjugative transposons. More distant homologs, outside the scope of this family, include type IV secretion/conjugal transfer proteins such as TraC, VirB4 and TrsE. The granularity of this protein family definition is chosen so as to represent one distinctive clade and act as a marker through which to define and recognize the class of mobile element it serves.
Probab=55.24 E-value=4.4 Score=37.13 Aligned_cols=19 Identities=47% Similarity=0.676 Sum_probs=17.0
Q ss_pred CCeeEEeeccCCCCCceee
Q psy12524 44 YNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 44 ~~~~v~~yG~~~sGKt~t~ 62 (151)
.|...+..|.||||||.++
T Consensus 474 ~n~n~~I~G~TGSGKS~l~ 492 (893)
T TIGR03744 474 KNAHLLILGPTGAGKSATL 492 (893)
T ss_pred CcccEEEECCCCCCHHHHH
Confidence 4778899999999999988
No 273
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=54.78 E-value=11 Score=30.49 Aligned_cols=26 Identities=23% Similarity=0.327 Sum_probs=20.1
Q ss_pred HHHhhcCCCeeEEeeccCCCCCceee
Q psy12524 37 LDNAFQGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 37 v~~~~~G~~~~v~~yG~~~sGKt~t~ 62 (151)
.+.+.+|.+..++...+||||||...
T Consensus 6 ~~~~~~~~~~~~~i~apTGsGKT~~~ 31 (357)
T TIGR03158 6 FEALQSKDADIIFNTAPTGAGKTLAW 31 (357)
T ss_pred HHHHHcCCCCEEEEECCCCCCHHHHH
Confidence 34556677767888899999999864
No 274
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=54.58 E-value=12 Score=31.59 Aligned_cols=25 Identities=28% Similarity=0.519 Sum_probs=18.2
Q ss_pred HHHHhhcCCCeeEEeeccCCCCCceee
Q psy12524 36 ILDNAFQGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 36 lv~~~~~G~~~~v~~yG~~~sGKt~t~ 62 (151)
.+..++.|.++ ++..+||||||.+.
T Consensus 19 ai~~~l~g~dv--lv~apTGsGKTl~y 43 (470)
T TIGR00614 19 VINAVLLGRDC--FVVMPTGGGKSLCY 43 (470)
T ss_pred HHHHHHcCCCE--EEEcCCCCcHhHHH
Confidence 44567788864 55679999999753
No 275
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=54.38 E-value=6.9 Score=35.30 Aligned_cols=20 Identities=25% Similarity=0.395 Sum_probs=16.3
Q ss_pred CeeEEeeccCCCCCceeecc
Q psy12524 45 NACIFAYGQTGSGKSYTMMG 64 (151)
Q Consensus 45 ~~~v~~yG~~~sGKt~t~~G 64 (151)
...++.+|.+|+|||+...+
T Consensus 207 ~~n~LLvGppGvGKT~lae~ 226 (758)
T PRK11034 207 KNNPLLVGESGVGKTAIAEG 226 (758)
T ss_pred CCCeEEECCCCCCHHHHHHH
Confidence 34567799999999999855
No 276
>PRK14532 adenylate kinase; Provisional
Probab=54.25 E-value=7.4 Score=28.15 Aligned_cols=16 Identities=19% Similarity=0.451 Sum_probs=13.4
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
.++..|..|||||...
T Consensus 2 ~i~~~G~pGsGKsT~a 17 (188)
T PRK14532 2 NLILFGPPAAGKGTQA 17 (188)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788999999998665
No 277
>TIGR02746 TraC-F-type type-IV secretion system protein TraC. The protein family described here is common among the F, P and I-like type IV secretion systems. Gene symbols include TraC (F-type), TrbE/VirB4 (P-type) and TraU (I-type). The protein conyains the Walker A and B motifs and so is a putative nucleotide triphosphatase.
Probab=54.19 E-value=4.8 Score=36.08 Aligned_cols=18 Identities=44% Similarity=0.639 Sum_probs=15.8
Q ss_pred CeeEEeeccCCCCCceee
Q psy12524 45 NACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 45 ~~~v~~yG~~~sGKt~t~ 62 (151)
|..++..|.+|||||.++
T Consensus 430 n~n~~I~G~tGsGKS~~~ 447 (797)
T TIGR02746 430 NYNIAVVGGSGAGKSFFM 447 (797)
T ss_pred ccceEEEcCCCCCHHHHH
Confidence 456789999999999998
No 278
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=54.00 E-value=7 Score=23.70 Aligned_cols=15 Identities=47% Similarity=0.541 Sum_probs=11.9
Q ss_pred EEeeccCCCCCceee
Q psy12524 48 IFAYGQTGSGKSYTM 62 (151)
Q Consensus 48 v~~yG~~~sGKt~t~ 62 (151)
+...|..|||||...
T Consensus 2 i~i~G~~gsGKst~~ 16 (69)
T cd02019 2 IAITGGSGSGKSTVA 16 (69)
T ss_pred EEEECCCCCCHHHHH
Confidence 345699999998776
No 279
>KOG0739|consensus
Probab=53.86 E-value=6.1 Score=32.14 Aligned_cols=60 Identities=28% Similarity=0.449 Sum_probs=38.9
Q ss_pred HHHHHhHHHH-HHhhcCCC---eeEEeeccCCCCCceeecc----------CCCC-------CCcHHHHHHHHHHHHHhh
Q psy12524 28 VFDALGRDIL-DNAFQGYN---ACIFAYGQTGSGKSYTMMG----------SQDN-------KGIIPRLCDSLFDLIAKQ 86 (151)
Q Consensus 28 vy~~~~~~lv-~~~~~G~~---~~v~~yG~~~sGKt~t~~G----------~~~~-------~Gli~~~~~~lf~~~~~~ 86 (151)
+=+.++.|+- .++|.|.. ..++.||+.|+||+|.... +-++ -|=-...++.||++..+.
T Consensus 145 LKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWmGESEkLVknLFemARe~ 224 (439)
T KOG0739|consen 145 LKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKNLFEMAREN 224 (439)
T ss_pred HHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHHhccHHHHHHHHHHHHHhc
Confidence 3334444432 45676653 5799999999999997632 0111 366677889999887655
Q ss_pred c
Q psy12524 87 E 87 (151)
Q Consensus 87 ~ 87 (151)
.
T Consensus 225 k 225 (439)
T KOG0739|consen 225 K 225 (439)
T ss_pred C
Confidence 4
No 280
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=53.84 E-value=7.4 Score=27.80 Aligned_cols=16 Identities=38% Similarity=0.497 Sum_probs=13.2
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
.++..|++|||||..+
T Consensus 3 ii~l~G~~GsGKsTl~ 18 (180)
T TIGR03263 3 LIVISGPSGVGKSTLV 18 (180)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4677899999999854
No 281
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=53.82 E-value=10 Score=31.64 Aligned_cols=18 Identities=33% Similarity=0.660 Sum_probs=15.7
Q ss_pred eeEEeeccCCCCCceeec
Q psy12524 46 ACIFAYGQTGSGKSYTMM 63 (151)
Q Consensus 46 ~~v~~yG~~~sGKt~t~~ 63 (151)
.-+++.|.+|||||.++.
T Consensus 45 ~h~lvig~tgSGKt~~~v 62 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFV 62 (469)
T ss_pred eEEEEEeCCCCCccceee
Confidence 568999999999999883
No 282
>PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein. It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A.
Probab=53.67 E-value=4.3 Score=33.38 Aligned_cols=17 Identities=41% Similarity=0.647 Sum_probs=12.8
Q ss_pred eeEEeeccCCCCCceee
Q psy12524 46 ACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 46 ~~v~~yG~~~sGKt~t~ 62 (151)
..++..|.+|||||..|
T Consensus 16 ~~~li~G~~GsGKT~~i 32 (386)
T PF10412_consen 16 RHILIIGATGSGKTQAI 32 (386)
T ss_dssp G-EEEEE-TTSSHHHHH
T ss_pred CcEEEECCCCCCHHHHH
Confidence 35688999999999866
No 283
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=53.66 E-value=18 Score=33.68 Aligned_cols=17 Identities=29% Similarity=0.591 Sum_probs=14.1
Q ss_pred eeEEeeccCCCCCceee
Q psy12524 46 ACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 46 ~~v~~yG~~~sGKt~t~ 62 (151)
..++.+|+||+|||..+
T Consensus 27 gl~~I~G~nGaGKSTil 43 (1042)
T TIGR00618 27 PIFLICGKTGAGKTTLL 43 (1042)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 56668899999998766
No 284
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=53.64 E-value=7 Score=26.63 Aligned_cols=15 Identities=47% Similarity=0.519 Sum_probs=12.6
Q ss_pred EEeeccCCCCCceee
Q psy12524 48 IFAYGQTGSGKSYTM 62 (151)
Q Consensus 48 v~~yG~~~sGKt~t~ 62 (151)
++..|.+|||||...
T Consensus 2 I~i~G~~GsGKst~a 16 (147)
T cd02020 2 IAIDGPAGSGKSTVA 16 (147)
T ss_pred EEEECCCCCCHHHHH
Confidence 567899999999865
No 285
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=53.61 E-value=5.4 Score=33.38 Aligned_cols=16 Identities=38% Similarity=0.578 Sum_probs=13.8
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
.++..|++|+|||.|+
T Consensus 223 ~i~~vGptGvGKTTt~ 238 (424)
T PRK05703 223 VVALVGPTGVGKTTTL 238 (424)
T ss_pred EEEEECCCCCCHHHHH
Confidence 5666799999999987
No 286
>PRK06762 hypothetical protein; Provisional
Probab=53.58 E-value=7.3 Score=27.52 Aligned_cols=15 Identities=40% Similarity=0.607 Sum_probs=12.2
Q ss_pred eEEeeccCCCCCcee
Q psy12524 47 CIFAYGQTGSGKSYT 61 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t 61 (151)
.+...|.+|||||..
T Consensus 4 li~i~G~~GsGKST~ 18 (166)
T PRK06762 4 LIIIRGNSGSGKTTI 18 (166)
T ss_pred EEEEECCCCCCHHHH
Confidence 466789999999873
No 287
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=53.23 E-value=5 Score=30.83 Aligned_cols=15 Identities=40% Similarity=0.605 Sum_probs=12.7
Q ss_pred EEeeccCCCCCceee
Q psy12524 48 IFAYGQTGSGKSYTM 62 (151)
Q Consensus 48 v~~yG~~~sGKt~t~ 62 (151)
+...|++|||||..|
T Consensus 34 vaI~GpSGSGKSTLL 48 (226)
T COG1136 34 VAIVGPSGSGKSTLL 48 (226)
T ss_pred EEEECCCCCCHHHHH
Confidence 466799999999877
No 288
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=53.23 E-value=9.1 Score=32.77 Aligned_cols=20 Identities=25% Similarity=0.504 Sum_probs=17.2
Q ss_pred CCCeeEEeeccCCCCCceee
Q psy12524 43 GYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 43 G~~~~v~~yG~~~sGKt~t~ 62 (151)
..+..|+..|.+||||+...
T Consensus 217 ~~~~pvli~Ge~GtGK~~lA 236 (534)
T TIGR01817 217 RSNSTVLLRGESGTGKELIA 236 (534)
T ss_pred CcCCCEEEECCCCccHHHHH
Confidence 56778999999999998776
No 289
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=53.17 E-value=5.7 Score=35.46 Aligned_cols=17 Identities=29% Similarity=0.651 Sum_probs=14.9
Q ss_pred eeEEeeccCCCCCceee
Q psy12524 46 ACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 46 ~~v~~yG~~~sGKt~t~ 62 (151)
..++.||++|+|||+.+
T Consensus 213 ~giLL~GppGtGKT~la 229 (733)
T TIGR01243 213 KGVLLYGPPGTGKTLLA 229 (733)
T ss_pred ceEEEECCCCCChHHHH
Confidence 46899999999999876
No 290
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=53.16 E-value=4.7 Score=26.62 Aligned_cols=15 Identities=27% Similarity=0.406 Sum_probs=12.7
Q ss_pred EEeeccCCCCCceee
Q psy12524 48 IFAYGQTGSGKSYTM 62 (151)
Q Consensus 48 v~~yG~~~sGKt~t~ 62 (151)
|...|.+|+|||..+
T Consensus 2 V~iiG~~~~GKSTli 16 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLI 16 (116)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 567899999999876
No 291
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=53.16 E-value=13 Score=31.71 Aligned_cols=24 Identities=29% Similarity=0.468 Sum_probs=17.6
Q ss_pred HHHHhhcCCCeeEEeeccCCCCCcee
Q psy12524 36 ILDNAFQGYNACIFAYGQTGSGKSYT 61 (151)
Q Consensus 36 lv~~~~~G~~~~v~~yG~~~sGKt~t 61 (151)
.+..++.|.+. ++..+||||||..
T Consensus 151 aip~il~g~dv--iv~ApTGSGKTla 174 (518)
T PLN00206 151 AIPAALSGRSL--LVSADTGSGKTAS 174 (518)
T ss_pred HHHHHhcCCCE--EEEecCCCCccHH
Confidence 34556778764 6677999999964
No 292
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=52.89 E-value=11 Score=33.14 Aligned_cols=25 Identities=28% Similarity=0.559 Sum_probs=18.7
Q ss_pred HHHHhhcCCCeeEEeeccCCCCCceee
Q psy12524 36 ILDNAFQGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 36 lv~~~~~G~~~~v~~yG~~~sGKt~t~ 62 (151)
.+..++.|.+ +++.++||||||...
T Consensus 36 ai~~ll~g~d--vl~~ApTGsGKT~af 60 (629)
T PRK11634 36 CIPHLLNGRD--VLGMAQTGSGKTAAF 60 (629)
T ss_pred HHHHHHcCCC--EEEEcCCCCcHHHHH
Confidence 4455667765 678889999999764
No 293
>KOG0744|consensus
Probab=52.69 E-value=5.8 Score=32.55 Aligned_cols=20 Identities=30% Similarity=0.421 Sum_probs=16.3
Q ss_pred CeeEEeeccCCCCCceeecc
Q psy12524 45 NACIFAYGQTGSGKSYTMMG 64 (151)
Q Consensus 45 ~~~v~~yG~~~sGKt~t~~G 64 (151)
|-.++..|++|+|||..+.+
T Consensus 177 NRliLlhGPPGTGKTSLCKa 196 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKA 196 (423)
T ss_pred eeEEEEeCCCCCChhHHHHH
Confidence 44568889999999998855
No 294
>KOG0727|consensus
Probab=52.56 E-value=7 Score=31.11 Aligned_cols=64 Identities=22% Similarity=0.413 Sum_probs=40.7
Q ss_pred CCCHHHHHHHHhHHHHHHhhc---CCC--eeEEeeccCCCCCceeec--------------cCC---CCCCcHHHHHHHH
Q psy12524 22 FASQEKVFDALGRDILDNAFQ---GYN--ACIFAYGQTGSGKSYTMM--------------GSQ---DNKGIIPRLCDSL 79 (151)
Q Consensus 22 ~~~q~~vy~~~~~~lv~~~~~---G~~--~~v~~yG~~~sGKt~t~~--------------G~~---~~~Gli~~~~~~l 79 (151)
+.--++|-+.+-.|+.+.=+- |.+ --|+.||+.|+|||-... |+. ...|-=||.++++
T Consensus 161 d~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvqkylgegprmvrdv 240 (408)
T KOG0727|consen 161 DVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDV 240 (408)
T ss_pred hhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHhccCcHHHHHH
Confidence 344456666666677765331 443 368999999999985542 221 1245668999999
Q ss_pred HHHHHh
Q psy12524 80 FDLIAK 85 (151)
Q Consensus 80 f~~~~~ 85 (151)
|+...+
T Consensus 241 frlake 246 (408)
T KOG0727|consen 241 FRLAKE 246 (408)
T ss_pred HHHHhc
Confidence 987653
No 295
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=52.56 E-value=11 Score=30.22 Aligned_cols=28 Identities=21% Similarity=0.310 Sum_probs=21.1
Q ss_pred HHHHHhhcC-C--CeeEEeeccCCCCCceee
Q psy12524 35 DILDNAFQG-Y--NACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 35 ~lv~~~~~G-~--~~~v~~yG~~~sGKt~t~ 62 (151)
+-++.++.| . ......||.+|||||..+
T Consensus 83 ~~LD~lLgGGi~~G~iteI~G~~GsGKTql~ 113 (313)
T TIGR02238 83 QALDGILGGGIESMSITEVFGEFRCGKTQLS 113 (313)
T ss_pred HHHHHHhCCCCcCCeEEEEECCCCCCcCHHH
Confidence 556777764 4 345678999999999876
No 296
>PRK08233 hypothetical protein; Provisional
Probab=52.49 E-value=7.1 Score=27.76 Aligned_cols=16 Identities=25% Similarity=0.266 Sum_probs=12.1
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
.|..-|.+|||||...
T Consensus 5 iI~I~G~~GsGKtTla 20 (182)
T PRK08233 5 IITIAAVSGGGKTTLT 20 (182)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3455699999998754
No 297
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=52.28 E-value=5.8 Score=29.50 Aligned_cols=16 Identities=31% Similarity=0.559 Sum_probs=14.3
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
++...|.+|+|||..+
T Consensus 24 ~~~i~G~NGsGKTTLl 39 (204)
T cd03240 24 LTLIVGQNGAGKTTII 39 (204)
T ss_pred eEEEECCCCCCHHHHH
Confidence 6778899999999887
No 298
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=52.23 E-value=13 Score=27.79 Aligned_cols=26 Identities=31% Similarity=0.578 Sum_probs=18.7
Q ss_pred HHHhhc-CC--CeeEEeeccCCCCCceee
Q psy12524 37 LDNAFQ-GY--NACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 37 v~~~~~-G~--~~~v~~yG~~~sGKt~t~ 62 (151)
++.++. |. ...++..|.+|+|||...
T Consensus 5 LD~~l~gGi~~g~~~li~G~~G~GKt~~~ 33 (224)
T TIGR03880 5 LDEMLGGGFPEGHVIVVIGEYGTGKTTFS 33 (224)
T ss_pred hHHHhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 455554 43 556778999999998765
No 299
>PRK13531 regulatory ATPase RavA; Provisional
Probab=52.03 E-value=12 Score=32.07 Aligned_cols=18 Identities=28% Similarity=0.469 Sum_probs=14.9
Q ss_pred CeeEEeeccCCCCCceee
Q psy12524 45 NACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 45 ~~~v~~yG~~~sGKt~t~ 62 (151)
+..++.+|.+|+|||+..
T Consensus 39 g~hVLL~GpPGTGKT~LA 56 (498)
T PRK13531 39 GESVFLLGPPGIAKSLIA 56 (498)
T ss_pred CCCEEEECCCChhHHHHH
Confidence 345689999999999877
No 300
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=51.97 E-value=5.5 Score=32.63 Aligned_cols=15 Identities=27% Similarity=0.561 Sum_probs=12.5
Q ss_pred EEeeccCCCCCceee
Q psy12524 48 IFAYGQTGSGKSYTM 62 (151)
Q Consensus 48 v~~yG~~~sGKt~t~ 62 (151)
+...|++|||||.++
T Consensus 34 ~~lLGPSGcGKTTlL 48 (352)
T COG3842 34 VTLLGPSGCGKTTLL 48 (352)
T ss_pred EEEECCCCCCHHHHH
Confidence 345699999999988
No 301
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=51.94 E-value=15 Score=33.95 Aligned_cols=32 Identities=16% Similarity=0.071 Sum_probs=21.8
Q ss_pred HHhHHHHHHhhcCCCeeEEeeccCCCCCceee
Q psy12524 31 ALGRDILDNAFQGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 31 ~~~~~lv~~~~~G~~~~v~~yG~~~sGKt~t~ 62 (151)
.++..+.++.-.+....++..|.||||||...
T Consensus 458 ~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~va 489 (926)
T TIGR00580 458 KAIEEIKADMESPRPMDRLVCGDVGFGKTEVA 489 (926)
T ss_pred HHHHHHHhhhcccCcCCEEEECCCCccHHHHH
Confidence 34444445544555556789999999999754
No 302
>PRK04040 adenylate kinase; Provisional
Probab=51.76 E-value=6.8 Score=28.89 Aligned_cols=16 Identities=25% Similarity=0.509 Sum_probs=13.9
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
.++.+|.+|||||..+
T Consensus 4 ~i~v~G~pG~GKtt~~ 19 (188)
T PRK04040 4 VVVVTGVPGVGKTTVL 19 (188)
T ss_pred EEEEEeCCCCCHHHHH
Confidence 4778999999999877
No 303
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=51.59 E-value=8 Score=28.63 Aligned_cols=17 Identities=29% Similarity=0.563 Sum_probs=13.0
Q ss_pred eeEEeeccCCCCCceee
Q psy12524 46 ACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 46 ~~v~~yG~~~sGKt~t~ 62 (151)
-+|+..|+.|||||..+
T Consensus 4 ~~vlL~Gps~SGKTaLf 20 (181)
T PF09439_consen 4 PTVLLVGPSGSGKTALF 20 (181)
T ss_dssp -EEEEE-STTSSHHHHH
T ss_pred ceEEEEcCCCCCHHHHH
Confidence 46888999999999765
No 304
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=51.57 E-value=14 Score=27.49 Aligned_cols=27 Identities=26% Similarity=0.417 Sum_probs=19.6
Q ss_pred HHHHhhc-CC--CeeEEeeccCCCCCceee
Q psy12524 36 ILDNAFQ-GY--NACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 36 lv~~~~~-G~--~~~v~~yG~~~sGKt~t~ 62 (151)
-++.++. |. ..+++.+|.+|+|||...
T Consensus 8 ~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~ 37 (229)
T TIGR03881 8 GLDKLLEGGIPRGFFVAVTGEPGTGKTIFC 37 (229)
T ss_pred hHHHhhcCCCcCCeEEEEECCCCCChHHHH
Confidence 3455553 43 567888999999998865
No 305
>PRK00300 gmk guanylate kinase; Provisional
Probab=51.54 E-value=8.7 Score=28.10 Aligned_cols=17 Identities=35% Similarity=0.477 Sum_probs=13.7
Q ss_pred eeEEeeccCCCCCceee
Q psy12524 46 ACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 46 ~~v~~yG~~~sGKt~t~ 62 (151)
..+...|++|||||..+
T Consensus 6 ~~i~i~G~sGsGKstl~ 22 (205)
T PRK00300 6 LLIVLSGPSGAGKSTLV 22 (205)
T ss_pred CEEEEECCCCCCHHHHH
Confidence 45778899999999754
No 306
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=51.48 E-value=8.8 Score=31.26 Aligned_cols=20 Identities=30% Similarity=0.365 Sum_probs=16.9
Q ss_pred CCCeeEEeeccCCCCCceee
Q psy12524 43 GYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 43 G~~~~v~~yG~~~sGKt~t~ 62 (151)
+....++..|.+|+|||.|+
T Consensus 137 ~~p~Vil~vGVNG~GKTTTI 156 (340)
T COG0552 137 KKPFVILFVGVNGVGKTTTI 156 (340)
T ss_pred CCcEEEEEEecCCCchHhHH
Confidence 44567788899999999998
No 307
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=51.44 E-value=5.4 Score=31.96 Aligned_cols=17 Identities=35% Similarity=0.493 Sum_probs=14.9
Q ss_pred eeEEeeccCCCCCceee
Q psy12524 46 ACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 46 ~~v~~yG~~~sGKt~t~ 62 (151)
-+++..|.|+||||..|
T Consensus 144 ~siii~G~t~sGKTt~l 160 (312)
T COG0630 144 KSIIICGGTASGKTTLL 160 (312)
T ss_pred CcEEEECCCCCCHHHHH
Confidence 35788999999999988
No 308
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=51.44 E-value=11 Score=30.12 Aligned_cols=28 Identities=32% Similarity=0.451 Sum_probs=20.5
Q ss_pred HHHHHhhcC-C--CeeEEeeccCCCCCceee
Q psy12524 35 DILDNAFQG-Y--NACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 35 ~lv~~~~~G-~--~~~v~~yG~~~sGKt~t~ 62 (151)
+-++.++.| . ...+..+|.+|+|||..+
T Consensus 89 ~~lD~~l~GGi~~g~vtei~G~~GsGKT~l~ 119 (317)
T PRK04301 89 KELDELLGGGIETQSITEFYGEFGSGKTQIC 119 (317)
T ss_pred HHHHHHhcCCccCCcEEEEECCCCCCHhHHH
Confidence 445666663 3 456778999999999876
No 309
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=51.23 E-value=5.8 Score=26.90 Aligned_cols=16 Identities=38% Similarity=0.524 Sum_probs=13.4
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
.+...|.+|||||..+
T Consensus 13 ~~~i~G~nGsGKStLl 28 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLL 28 (137)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEEccCCCccccce
Confidence 4567899999999877
No 310
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=51.14 E-value=12 Score=31.50 Aligned_cols=26 Identities=31% Similarity=0.551 Sum_probs=18.9
Q ss_pred HHHHHhhcCCCeeEEeeccCCCCCceee
Q psy12524 35 DILDNAFQGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 35 ~lv~~~~~G~~~~v~~yG~~~sGKt~t~ 62 (151)
..+..+++|.+. +...+||||||...
T Consensus 116 ~ai~~~~~G~dv--i~~apTGSGKTlay 141 (475)
T PRK01297 116 QVLGYTLAGHDA--IGRAQTGTGKTAAF 141 (475)
T ss_pred HHHHHHhCCCCE--EEECCCCChHHHHH
Confidence 455667889876 44569999999554
No 311
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=51.12 E-value=9.2 Score=29.03 Aligned_cols=27 Identities=26% Similarity=0.442 Sum_probs=19.5
Q ss_pred HHHHhhc-CC--CeeEEeeccCCCCCceee
Q psy12524 36 ILDNAFQ-GY--NACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 36 lv~~~~~-G~--~~~v~~yG~~~sGKt~t~ 62 (151)
-++.++. |. ..+++.+|.+|||||-..
T Consensus 9 ~LD~~l~GG~~~gs~~lI~G~pGsGKT~la 38 (237)
T TIGR03877 9 GMDEILHGGIPERNVVLLSGGPGTGKSIFS 38 (237)
T ss_pred hHHHHhcCCCcCCeEEEEEcCCCCCHHHHH
Confidence 3455554 44 567889999999998744
No 312
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=50.69 E-value=5.3 Score=27.66 Aligned_cols=18 Identities=28% Similarity=0.438 Sum_probs=15.6
Q ss_pred eeEEeeccCCCCCceeec
Q psy12524 46 ACIFAYGQTGSGKSYTMM 63 (151)
Q Consensus 46 ~~v~~yG~~~sGKt~t~~ 63 (151)
..|+.+|.-|+|||....
T Consensus 16 ~vi~L~GdLGaGKTtf~r 33 (123)
T PF02367_consen 16 DVILLSGDLGAGKTTFVR 33 (123)
T ss_dssp EEEEEEESTTSSHHHHHH
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 568899999999999883
No 313
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=50.65 E-value=4.7 Score=29.98 Aligned_cols=15 Identities=40% Similarity=0.488 Sum_probs=12.7
Q ss_pred EeeccCCCCCceeec
Q psy12524 49 FAYGQTGSGKSYTMM 63 (151)
Q Consensus 49 ~~yG~~~sGKt~t~~ 63 (151)
+..|..|||||+.+.
T Consensus 2 vv~G~pGsGKSt~i~ 16 (234)
T PF01443_consen 2 VVHGVPGSGKSTLIK 16 (234)
T ss_pred EEEcCCCCCHHHHHH
Confidence 567999999999883
No 314
>PRK13700 conjugal transfer protein TraD; Provisional
Probab=50.55 E-value=7.8 Score=34.77 Aligned_cols=16 Identities=31% Similarity=0.441 Sum_probs=13.6
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
-++..|.+|||||..|
T Consensus 187 H~li~GttGSGKS~~i 202 (732)
T PRK13700 187 NFCLHGTVGAGKSEVI 202 (732)
T ss_pred ceEEeCCCCCCHHHHH
Confidence 3578899999999876
No 315
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=50.37 E-value=8.6 Score=30.77 Aligned_cols=16 Identities=38% Similarity=0.719 Sum_probs=13.7
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
.++..|+|+||||...
T Consensus 6 ii~I~GpTasGKS~LA 21 (300)
T PRK14729 6 IVFIFGPTAVGKSNIL 21 (300)
T ss_pred EEEEECCCccCHHHHH
Confidence 5788899999999855
No 316
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=50.35 E-value=21 Score=30.10 Aligned_cols=17 Identities=41% Similarity=0.556 Sum_probs=15.0
Q ss_pred eeEEeeccCCCCCceee
Q psy12524 46 ACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 46 ~~v~~yG~~~sGKt~t~ 62 (151)
..+...|++|+|||.++
T Consensus 242 ~vI~LVGptGvGKTTTi 258 (436)
T PRK11889 242 QTIALIGPTGVGKTTTL 258 (436)
T ss_pred cEEEEECCCCCcHHHHH
Confidence 46778899999999998
No 317
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=50.29 E-value=8.2 Score=26.79 Aligned_cols=15 Identities=40% Similarity=0.581 Sum_probs=11.9
Q ss_pred EEeeccCCCCCceee
Q psy12524 48 IFAYGQTGSGKSYTM 62 (151)
Q Consensus 48 v~~yG~~~sGKt~t~ 62 (151)
++..|++|||||..+
T Consensus 2 i~i~GpsGsGKstl~ 16 (137)
T cd00071 2 IVLSGPSGVGKSTLL 16 (137)
T ss_pred EEEECCCCCCHHHHH
Confidence 456799999999754
No 318
>PHA02774 E1; Provisional
Probab=50.24 E-value=14 Score=32.41 Aligned_cols=27 Identities=30% Similarity=0.618 Sum_probs=20.1
Q ss_pred HHHHhhcCCC--eeEEeeccCCCCCceee
Q psy12524 36 ILDNAFQGYN--ACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 36 lv~~~~~G~~--~~v~~yG~~~sGKt~t~ 62 (151)
.+..++.|.. .|++.||+.++|||+..
T Consensus 423 ~lk~~l~~~PKknciv~~GPP~TGKS~fa 451 (613)
T PHA02774 423 ALKDFLKGIPKKNCLVIYGPPDTGKSMFC 451 (613)
T ss_pred HHHHHHhcCCcccEEEEECCCCCCHHHHH
Confidence 3445555543 48899999999999876
No 319
>PRK14527 adenylate kinase; Provisional
Probab=50.24 E-value=9.1 Score=27.89 Aligned_cols=18 Identities=28% Similarity=0.501 Sum_probs=14.7
Q ss_pred CeeEEeeccCCCCCceee
Q psy12524 45 NACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 45 ~~~v~~yG~~~sGKt~t~ 62 (151)
...++..|.+|||||...
T Consensus 6 ~~~i~i~G~pGsGKsT~a 23 (191)
T PRK14527 6 NKVVIFLGPPGAGKGTQA 23 (191)
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 346889999999998755
No 320
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=50.23 E-value=19 Score=32.63 Aligned_cols=17 Identities=29% Similarity=0.425 Sum_probs=14.8
Q ss_pred eeEEeeccCCCCCceee
Q psy12524 46 ACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 46 ~~v~~yG~~~sGKt~t~ 62 (151)
++++.+|++|+|||++.
T Consensus 489 ~~~Lf~GP~GvGKT~lA 505 (758)
T PRK11034 489 GSFLFAGPTGVGKTEVT 505 (758)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 57899999999999765
No 321
>PRK05580 primosome assembly protein PriA; Validated
Probab=50.18 E-value=12 Score=33.23 Aligned_cols=17 Identities=35% Similarity=0.428 Sum_probs=14.4
Q ss_pred eeEEeeccCCCCCceee
Q psy12524 46 ACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 46 ~~v~~yG~~~sGKt~t~ 62 (151)
..++.+|.||||||...
T Consensus 163 ~~~Ll~~~TGSGKT~v~ 179 (679)
T PRK05580 163 SPFLLDGVTGSGKTEVY 179 (679)
T ss_pred CcEEEECCCCChHHHHH
Confidence 34789999999999766
No 322
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=50.10 E-value=5.9 Score=27.08 Aligned_cols=15 Identities=33% Similarity=0.390 Sum_probs=12.6
Q ss_pred EEeeccCCCCCceee
Q psy12524 48 IFAYGQTGSGKSYTM 62 (151)
Q Consensus 48 v~~yG~~~sGKt~t~ 62 (151)
|...|.+|+|||..+
T Consensus 2 i~l~G~~g~GKTtL~ 16 (170)
T cd01876 2 IAFAGRSNVGKSSLI 16 (170)
T ss_pred EEEEcCCCCCHHHHH
Confidence 467899999999877
No 323
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=50.03 E-value=9.3 Score=29.57 Aligned_cols=18 Identities=28% Similarity=0.355 Sum_probs=14.8
Q ss_pred CeeEEeeccCCCCCceee
Q psy12524 45 NACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 45 ~~~v~~yG~~~sGKt~t~ 62 (151)
..+++.+|.+|+|||...
T Consensus 36 gs~~lI~G~pGtGKT~l~ 53 (259)
T TIGR03878 36 YSVINITGVSDTGKSLMV 53 (259)
T ss_pred CcEEEEEcCCCCCHHHHH
Confidence 456788999999998754
No 324
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=50.00 E-value=11 Score=30.70 Aligned_cols=29 Identities=28% Similarity=0.378 Sum_probs=21.1
Q ss_pred HHHHHHhhcC-C--CeeEEeeccCCCCCceee
Q psy12524 34 RDILDNAFQG-Y--NACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 34 ~~lv~~~~~G-~--~~~v~~yG~~~sGKt~t~ 62 (151)
.+-++.++.| . ......||.+|||||..+
T Consensus 112 ~~~LD~lLgGGi~~G~ItEI~G~~GsGKTql~ 143 (344)
T PLN03187 112 SQALDELLGGGIETRCITEAFGEFRSGKTQLA 143 (344)
T ss_pred cHhHHhhcCCCCCCCeEEEEecCCCCChhHHH
Confidence 3556777763 3 345568999999999866
No 325
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=49.99 E-value=9.4 Score=29.32 Aligned_cols=26 Identities=27% Similarity=0.524 Sum_probs=19.0
Q ss_pred HHHhhcC---CCeeEEeeccCCCCCceee
Q psy12524 37 LDNAFQG---YNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 37 v~~~~~G---~~~~v~~yG~~~sGKt~t~ 62 (151)
++.++.| ....++.+|.+|||||-..
T Consensus 12 lD~~l~GG~p~g~~~lI~G~pGsGKT~f~ 40 (260)
T COG0467 12 LDEILGGGLPRGSVVLITGPPGTGKTIFA 40 (260)
T ss_pred hHHHhcCCCcCCcEEEEEcCCCCcHHHHH
Confidence 4555553 3567899999999998655
No 326
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=49.99 E-value=13 Score=32.23 Aligned_cols=25 Identities=32% Similarity=0.486 Sum_probs=18.7
Q ss_pred HHHHhhcCCCeeEEeeccCCCCCceee
Q psy12524 36 ILDNAFQGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 36 lv~~~~~G~~~~v~~yG~~~sGKt~t~ 62 (151)
.+..+++|.+ +++..+||||||...
T Consensus 39 ~ip~~l~G~D--vi~~ApTGSGKTlaf 63 (572)
T PRK04537 39 TLPVALPGGD--VAGQAQTGTGKTLAF 63 (572)
T ss_pred HHHHHhCCCC--EEEEcCCCCcHHHHH
Confidence 3455778887 466779999999653
No 327
>KOG0745|consensus
Probab=49.83 E-value=8.2 Score=32.86 Aligned_cols=17 Identities=35% Similarity=0.593 Sum_probs=14.3
Q ss_pred eeEEeeccCCCCCceee
Q psy12524 46 ACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 46 ~~v~~yG~~~sGKt~t~ 62 (151)
..|+..|+||||||...
T Consensus 227 SNvLllGPtGsGKTlla 243 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLA 243 (564)
T ss_pred ccEEEECCCCCchhHHH
Confidence 45789999999998765
No 328
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=49.74 E-value=8 Score=32.31 Aligned_cols=17 Identities=41% Similarity=0.597 Sum_probs=14.9
Q ss_pred eeEEeeccCCCCCceee
Q psy12524 46 ACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 46 ~~v~~yG~~~sGKt~t~ 62 (151)
..++.+|++|+|||...
T Consensus 109 ~~iLl~Gp~GtGKT~lA 125 (412)
T PRK05342 109 SNILLIGPTGSGKTLLA 125 (412)
T ss_pred ceEEEEcCCCCCHHHHH
Confidence 56899999999999766
No 329
>KOG0742|consensus
Probab=49.63 E-value=8.4 Score=32.69 Aligned_cols=14 Identities=43% Similarity=0.842 Sum_probs=12.4
Q ss_pred eEEeeccCCCCCce
Q psy12524 47 CIFAYGQTGSGKSY 60 (151)
Q Consensus 47 ~v~~yG~~~sGKt~ 60 (151)
.++.||+.|+|||-
T Consensus 386 NilfyGPPGTGKTm 399 (630)
T KOG0742|consen 386 NILFYGPPGTGKTM 399 (630)
T ss_pred heeeeCCCCCCchH
Confidence 67999999999974
No 330
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=49.62 E-value=6.9 Score=29.26 Aligned_cols=20 Identities=25% Similarity=0.414 Sum_probs=17.3
Q ss_pred CeeEEeeccCCCCCceeecc
Q psy12524 45 NACIFAYGQTGSGKSYTMMG 64 (151)
Q Consensus 45 ~~~v~~yG~~~sGKt~t~~G 64 (151)
...|..|+.+|.|||+..+|
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g 41 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFG 41 (191)
T ss_pred CCeEEEECCCCCChHHHHHH
Confidence 46889999999999999854
No 331
>COG3596 Predicted GTPase [General function prediction only]
Probab=49.57 E-value=13 Score=29.66 Aligned_cols=24 Identities=25% Similarity=0.337 Sum_probs=19.9
Q ss_pred HhhcCCCeeEEeeccCCCCCceee
Q psy12524 39 NAFQGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 39 ~~~~G~~~~v~~yG~~~sGKt~t~ 62 (151)
.+.+-....++..|.||+||+.++
T Consensus 33 ~l~~~~pvnvLi~G~TG~GKSSli 56 (296)
T COG3596 33 QLTEKEPVNVLLMGATGAGKSSLI 56 (296)
T ss_pred hhcccCceeEEEecCCCCcHHHHH
Confidence 345667788899999999999887
No 332
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=49.52 E-value=14 Score=31.49 Aligned_cols=28 Identities=21% Similarity=0.381 Sum_probs=21.2
Q ss_pred HHHHHhhc-CC--CeeEEeeccCCCCCceee
Q psy12524 35 DILDNAFQ-GY--NACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 35 ~lv~~~~~-G~--~~~v~~yG~~~sGKt~t~ 62 (151)
+-++.++. |+ ...++.+|.+|+|||-..
T Consensus 18 ~~LD~~l~GG~p~Gs~~li~G~pGsGKT~l~ 48 (509)
T PRK09302 18 EGFDDITHGGLPKGRPTLVSGTAGTGKTLFA 48 (509)
T ss_pred hhHHHhhcCCCCCCcEEEEEeCCCCCHHHHH
Confidence 45567775 43 567899999999998755
No 333
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=49.47 E-value=6.8 Score=33.49 Aligned_cols=17 Identities=35% Similarity=0.464 Sum_probs=14.6
Q ss_pred eeEEeeccCCCCCceee
Q psy12524 46 ACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 46 ~~v~~yG~~~sGKt~t~ 62 (151)
..+...|.+|+|||.|+
T Consensus 257 ~Vi~LvGpnGvGKTTTi 273 (484)
T PRK06995 257 GVFALMGPTGVGKTTTT 273 (484)
T ss_pred cEEEEECCCCccHHHHH
Confidence 45677799999999998
No 334
>PRK03839 putative kinase; Provisional
Probab=49.44 E-value=8.4 Score=27.68 Aligned_cols=15 Identities=33% Similarity=0.430 Sum_probs=12.5
Q ss_pred EEeeccCCCCCceee
Q psy12524 48 IFAYGQTGSGKSYTM 62 (151)
Q Consensus 48 v~~yG~~~sGKt~t~ 62 (151)
|+..|..|||||...
T Consensus 3 I~l~G~pGsGKsT~~ 17 (180)
T PRK03839 3 IAITGTPGVGKTTVS 17 (180)
T ss_pred EEEECCCCCCHHHHH
Confidence 677899999998654
No 335
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=49.43 E-value=6.7 Score=32.83 Aligned_cols=17 Identities=41% Similarity=0.597 Sum_probs=15.2
Q ss_pred eeEEeeccCCCCCceee
Q psy12524 46 ACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 46 ~~v~~yG~~~sGKt~t~ 62 (151)
..++.+|++|+|||...
T Consensus 117 ~~iLL~GP~GsGKT~lA 133 (413)
T TIGR00382 117 SNILLIGPTGSGKTLLA 133 (413)
T ss_pred ceEEEECCCCcCHHHHH
Confidence 57899999999999877
No 336
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=49.21 E-value=14 Score=32.32 Aligned_cols=25 Identities=32% Similarity=0.561 Sum_probs=18.1
Q ss_pred HHHHHhhcCCCeeEEeeccCCCCCcee
Q psy12524 35 DILDNAFQGYNACIFAYGQTGSGKSYT 61 (151)
Q Consensus 35 ~lv~~~~~G~~~~v~~yG~~~sGKt~t 61 (151)
..++.++.|.++ ++..+||+|||-+
T Consensus 32 ~ai~~il~g~dv--lv~apTGsGKTl~ 56 (607)
T PRK11057 32 EIIDAVLSGRDC--LVVMPTGGGKSLC 56 (607)
T ss_pred HHHHHHHcCCCE--EEEcCCCchHHHH
Confidence 345566788876 4456999999964
No 337
>CHL00095 clpC Clp protease ATP binding subunit
Probab=49.19 E-value=11 Score=34.32 Aligned_cols=20 Identities=25% Similarity=0.361 Sum_probs=16.5
Q ss_pred CeeEEeeccCCCCCceeecc
Q psy12524 45 NACIFAYGQTGSGKSYTMMG 64 (151)
Q Consensus 45 ~~~v~~yG~~~sGKt~t~~G 64 (151)
..+++.+|.+|+|||..+.|
T Consensus 200 ~~n~lL~G~pGvGKTal~~~ 219 (821)
T CHL00095 200 KNNPILIGEPGVGKTAIAEG 219 (821)
T ss_pred cCCeEEECCCCCCHHHHHHH
Confidence 34678999999999998854
No 338
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=49.09 E-value=8.9 Score=28.44 Aligned_cols=15 Identities=33% Similarity=0.547 Sum_probs=12.5
Q ss_pred EEeeccCCCCCceee
Q psy12524 48 IFAYGQTGSGKSYTM 62 (151)
Q Consensus 48 v~~yG~~~sGKt~t~ 62 (151)
|+..|.+||||+...
T Consensus 2 I~i~G~pGsGKsT~a 16 (210)
T TIGR01351 2 LVLLGPPGSGKGTQA 16 (210)
T ss_pred EEEECCCCCCHHHHH
Confidence 678999999997654
No 339
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=49.08 E-value=6.3 Score=28.81 Aligned_cols=15 Identities=40% Similarity=0.454 Sum_probs=12.1
Q ss_pred EEeeccCCCCCceee
Q psy12524 48 IFAYGQTGSGKSYTM 62 (151)
Q Consensus 48 v~~yG~~~sGKt~t~ 62 (151)
+..-|.+|||||.++
T Consensus 2 igi~G~~GsGKSTl~ 16 (198)
T cd02023 2 IGIAGGSGSGKTTVA 16 (198)
T ss_pred EEEECCCCCCHHHHH
Confidence 345699999999876
No 340
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=49.02 E-value=8.4 Score=27.09 Aligned_cols=15 Identities=47% Similarity=0.636 Sum_probs=12.1
Q ss_pred EEeeccCCCCCceee
Q psy12524 48 IFAYGQTGSGKSYTM 62 (151)
Q Consensus 48 v~~yG~~~sGKt~t~ 62 (151)
++..|.+|||||...
T Consensus 2 i~i~G~~GsGKSTla 16 (149)
T cd02027 2 IWLTGLSGSGKSTIA 16 (149)
T ss_pred EEEEcCCCCCHHHHH
Confidence 567799999998743
No 341
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=48.98 E-value=6.6 Score=28.75 Aligned_cols=15 Identities=40% Similarity=0.443 Sum_probs=12.1
Q ss_pred EEeeccCCCCCceee
Q psy12524 48 IFAYGQTGSGKSYTM 62 (151)
Q Consensus 48 v~~yG~~~sGKt~t~ 62 (151)
|-..|.+|||||...
T Consensus 2 IgI~G~sgSGKTTla 16 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLA 16 (194)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 456799999998765
No 342
>PRK01172 ski2-like helicase; Provisional
Probab=48.81 E-value=14 Score=32.62 Aligned_cols=24 Identities=21% Similarity=0.333 Sum_probs=17.2
Q ss_pred HHHhhcCCCeeEEeeccCCCCCceee
Q psy12524 37 LDNAFQGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 37 v~~~~~G~~~~v~~yG~~~sGKt~t~ 62 (151)
++.+.+|.| ++..++||||||...
T Consensus 31 i~~l~~~~n--vlv~apTGSGKTl~a 54 (674)
T PRK01172 31 IEQLRKGEN--VIVSVPTAAGKTLIA 54 (674)
T ss_pred HHHHhcCCc--EEEECCCCchHHHHH
Confidence 344566665 577789999999753
No 343
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=48.79 E-value=14 Score=31.29 Aligned_cols=28 Identities=21% Similarity=0.406 Sum_probs=20.6
Q ss_pred HHHHHhhc-C--CCeeEEeeccCCCCCceee
Q psy12524 35 DILDNAFQ-G--YNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 35 ~lv~~~~~-G--~~~~v~~yG~~~sGKt~t~ 62 (151)
+-++.++. | ...+++..|.+|||||-..
T Consensus 8 ~gLD~il~GGlp~g~~~Li~G~pGsGKT~la 38 (484)
T TIGR02655 8 EGFDDISHGGLPIGRSTLVSGTSGTGKTLFS 38 (484)
T ss_pred hhHHHhcCCCCCCCeEEEEEcCCCCCHHHHH
Confidence 34566665 4 3678899999999998554
No 344
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=48.65 E-value=5.8 Score=28.78 Aligned_cols=14 Identities=43% Similarity=0.646 Sum_probs=0.0
Q ss_pred EeeccCCCCCceee
Q psy12524 49 FAYGQTGSGKSYTM 62 (151)
Q Consensus 49 ~~yG~~~sGKt~t~ 62 (151)
+-+|.+|||||..+
T Consensus 3 viiG~N~sGKS~il 16 (303)
T PF13304_consen 3 VIIGPNGSGKSNIL 16 (303)
T ss_dssp --------------
T ss_pred cccccccccccccc
Confidence 35799999999988
No 345
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=48.53 E-value=9.7 Score=27.66 Aligned_cols=16 Identities=38% Similarity=0.652 Sum_probs=13.3
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
.++..|++|||||..+
T Consensus 4 ~i~l~G~sGsGKsTl~ 19 (186)
T PRK10078 4 LIWLMGPSGSGKDSLL 19 (186)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4667899999998766
No 346
>CHL00176 ftsH cell division protein; Validated
Probab=48.52 E-value=6.6 Score=34.69 Aligned_cols=17 Identities=24% Similarity=0.477 Sum_probs=15.1
Q ss_pred eeEEeeccCCCCCceee
Q psy12524 46 ACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 46 ~~v~~yG~~~sGKt~t~ 62 (151)
..++.||++|+|||+..
T Consensus 217 ~gVLL~GPpGTGKT~LA 233 (638)
T CHL00176 217 KGVLLVGPPGTGKTLLA 233 (638)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 45899999999999887
No 347
>PRK14530 adenylate kinase; Provisional
Probab=48.46 E-value=8.9 Score=28.56 Aligned_cols=16 Identities=31% Similarity=0.495 Sum_probs=13.2
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
.|+..|.+|||||...
T Consensus 5 ~I~i~G~pGsGKsT~~ 20 (215)
T PRK14530 5 RILLLGAPGAGKGTQS 20 (215)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4778999999998655
No 348
>KOG0743|consensus
Probab=48.44 E-value=5.8 Score=33.52 Aligned_cols=15 Identities=40% Similarity=0.731 Sum_probs=13.2
Q ss_pred EEeeccCCCCCceee
Q psy12524 48 IFAYGQTGSGKSYTM 62 (151)
Q Consensus 48 v~~yG~~~sGKt~t~ 62 (151)
-+.||++||||+..+
T Consensus 238 YLLYGPPGTGKSS~I 252 (457)
T KOG0743|consen 238 YLLYGPPGTGKSSFI 252 (457)
T ss_pred ceeeCCCCCCHHHHH
Confidence 489999999999876
No 349
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=48.38 E-value=7.2 Score=34.84 Aligned_cols=39 Identities=15% Similarity=0.292 Sum_probs=26.6
Q ss_pred eeEEeeccCCCCCceeecc------C-----------CCCCCcHHHHHHHHHHHHH
Q psy12524 46 ACIFAYGQTGSGKSYTMMG------S-----------QDNKGIIPRLCDSLFDLIA 84 (151)
Q Consensus 46 ~~v~~yG~~~sGKt~t~~G------~-----------~~~~Gli~~~~~~lf~~~~ 84 (151)
..++.||++|+|||..... . ....|=-...++.+|....
T Consensus 488 ~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~vGese~~i~~~f~~A~ 543 (733)
T TIGR01243 488 KGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKWVGESEKAIREIFRKAR 543 (733)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhcccCcHHHHHHHHHHHHH
Confidence 3578899999999987622 0 0123555677888887665
No 350
>KOG2035|consensus
Probab=48.35 E-value=17 Score=29.21 Aligned_cols=36 Identities=19% Similarity=0.405 Sum_probs=24.0
Q ss_pred HHHHHHhHHHHHHhhc-CCCeeEEeeccCCCCCceee
Q psy12524 27 KVFDALGRDILDNAFQ-GYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 27 ~vy~~~~~~lv~~~~~-G~~~~v~~yG~~~sGKt~t~ 62 (151)
-.|..-..+.+.+... |----++.||++|+||-..+
T Consensus 15 l~~~~e~~~~Lksl~~~~d~PHll~yGPSGaGKKTri 51 (351)
T KOG2035|consen 15 LIYHEELANLLKSLSSTGDFPHLLVYGPSGAGKKTRI 51 (351)
T ss_pred cccHHHHHHHHHHhcccCCCCeEEEECCCCCCchhhH
Confidence 3444555566666554 54456899999999996554
No 351
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=48.35 E-value=7.6 Score=29.13 Aligned_cols=16 Identities=38% Similarity=0.459 Sum_probs=13.0
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
.+...|++|+|||.+|
T Consensus 27 i~~ivGpNGaGKSTll 42 (212)
T cd03274 27 FSAIVGPNGSGKSNVI 42 (212)
T ss_pred eEEEECCCCCCHHHHH
Confidence 3446699999999988
No 352
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=48.28 E-value=19 Score=32.45 Aligned_cols=17 Identities=24% Similarity=0.307 Sum_probs=14.5
Q ss_pred eeEEeeccCCCCCceee
Q psy12524 46 ACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 46 ~~v~~yG~~~sGKt~t~ 62 (151)
..++.+|++|+|||...
T Consensus 348 ~~lll~GppG~GKT~lA 364 (775)
T TIGR00763 348 PILCLVGPPGVGKTSLG 364 (775)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 35788999999999876
No 353
>PRK06851 hypothetical protein; Provisional
Probab=48.25 E-value=9.9 Score=31.34 Aligned_cols=27 Identities=33% Similarity=0.514 Sum_probs=21.6
Q ss_pred HHHHhhcCCCeeEEeeccCCCCCceee
Q psy12524 36 ILDNAFQGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 36 lv~~~~~G~~~~v~~yG~~~sGKt~t~ 62 (151)
+.+.++.+.+-.++.-|.+|+|||.+|
T Consensus 21 ~~~~~~~~~~~~~il~G~pGtGKStl~ 47 (367)
T PRK06851 21 LYDSIIDGANRIFILKGGPGTGKSTLM 47 (367)
T ss_pred hhhhhccccceEEEEECCCCCCHHHHH
Confidence 334555677778899999999999988
No 354
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=48.19 E-value=9.5 Score=28.27 Aligned_cols=16 Identities=38% Similarity=0.468 Sum_probs=13.5
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
..+.+|++|+|||-.+
T Consensus 26 ~~~i~G~NGsGKS~il 41 (220)
T PF02463_consen 26 LNVIVGPNGSGKSNIL 41 (220)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred CEEEEcCCCCCHHHHH
Confidence 5578899999999776
No 355
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=48.17 E-value=7.2 Score=28.87 Aligned_cols=16 Identities=38% Similarity=0.366 Sum_probs=12.8
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
.+...|.+|||||..+
T Consensus 8 vi~I~G~sGsGKSTl~ 23 (207)
T TIGR00235 8 IIGIGGGSGSGKTTVA 23 (207)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4566799999999765
No 356
>PRK10865 protein disaggregation chaperone; Provisional
Probab=48.08 E-value=12 Score=34.26 Aligned_cols=31 Identities=19% Similarity=0.250 Sum_probs=21.2
Q ss_pred HHHHHHhhcCCCeeEEeeccCCCCCceeecc
Q psy12524 34 RDILDNAFQGYNACIFAYGQTGSGKSYTMMG 64 (151)
Q Consensus 34 ~~lv~~~~~G~~~~v~~yG~~~sGKt~t~~G 64 (151)
..+++-+.......++.+|.+|+|||..+.|
T Consensus 188 ~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~ 218 (857)
T PRK10865 188 RRTIQVLQRRTKNNPVLIGEPGVGKTAIVEG 218 (857)
T ss_pred HHHHHHHhcCCcCceEEECCCCCCHHHHHHH
Confidence 4444333344444677899999999999855
No 357
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=48.04 E-value=13 Score=26.67 Aligned_cols=28 Identities=21% Similarity=0.144 Sum_probs=22.0
Q ss_pred HHHHHhhcCCCeeEEeeccCCCCCceee
Q psy12524 35 DILDNAFQGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 35 ~lv~~~~~G~~~~v~~yG~~~sGKt~t~ 62 (151)
+.++......-..|...|.+|+|||..+
T Consensus 14 ~~~~~~~~~~~~~v~ivG~~~~GKSsli 41 (196)
T PRK00454 14 PKLEQLPPDDGPEIAFAGRSNVGKSSLI 41 (196)
T ss_pred ccHhhCCCCCCCEEEEEcCCCCCHHHHH
Confidence 4566666666667899999999999877
No 358
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=48.01 E-value=9.9 Score=27.86 Aligned_cols=15 Identities=40% Similarity=0.612 Sum_probs=12.2
Q ss_pred EEeeccCCCCCceee
Q psy12524 48 IFAYGQTGSGKSYTM 62 (151)
Q Consensus 48 v~~yG~~~sGKt~t~ 62 (151)
|+..|++||||+.-.
T Consensus 3 iiilG~pGaGK~T~A 17 (178)
T COG0563 3 ILILGPPGAGKSTLA 17 (178)
T ss_pred EEEECCCCCCHHHHH
Confidence 678899999997544
No 359
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=47.97 E-value=6.9 Score=31.87 Aligned_cols=15 Identities=33% Similarity=0.627 Sum_probs=13.0
Q ss_pred EEeeccCCCCCceee
Q psy12524 48 IFAYGQTGSGKSYTM 62 (151)
Q Consensus 48 v~~yG~~~sGKt~t~ 62 (151)
+...|++|||||.++
T Consensus 32 ~vllGPSGcGKSTlL 46 (338)
T COG3839 32 VVLLGPSGCGKSTLL 46 (338)
T ss_pred EEEECCCCCCHHHHH
Confidence 456799999999988
No 360
>KOG0738|consensus
Probab=47.70 E-value=18 Score=30.40 Aligned_cols=57 Identities=23% Similarity=0.361 Sum_probs=37.1
Q ss_pred HHhHHHH-HHhhcCCCe---eEEeeccCCCCCceee------ccC-----------CCCCCcHHHHHHHHHHHHHhhc
Q psy12524 31 ALGRDIL-DNAFQGYNA---CIFAYGQTGSGKSYTM------MGS-----------QDNKGIIPRLCDSLFDLIAKQE 87 (151)
Q Consensus 31 ~~~~~lv-~~~~~G~~~---~v~~yG~~~sGKt~t~------~G~-----------~~~~Gli~~~~~~lf~~~~~~~ 87 (151)
.++.|+. ..+|.|.-. .|+..|+.|||||-.. .|. ..-+|=-...++-||.+.....
T Consensus 227 AVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstltSKwRGeSEKlvRlLFemARfyA 304 (491)
T KOG0738|consen 227 AVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLTSKWRGESEKLVRLLFEMARFYA 304 (491)
T ss_pred HHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhhhhhccchHHHHHHHHHHHHHhC
Confidence 4445554 557777643 6889999999998544 221 1126777788888887765443
No 361
>KOG0741|consensus
Probab=47.62 E-value=10 Score=33.11 Aligned_cols=16 Identities=38% Similarity=0.733 Sum_probs=14.1
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
-++.||+.|+|||-..
T Consensus 258 GiLLyGPPGTGKTLiA 273 (744)
T KOG0741|consen 258 GILLYGPPGTGKTLIA 273 (744)
T ss_pred eEEEECCCCCChhHHH
Confidence 4899999999999765
No 362
>KOG1547|consensus
Probab=47.60 E-value=25 Score=27.76 Aligned_cols=33 Identities=27% Similarity=0.503 Sum_probs=24.2
Q ss_pred HHHhHHHHHHhh-cCCCeeEEeeccCCCCCceee
Q psy12524 30 DALGRDILDNAF-QGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 30 ~~~~~~lv~~~~-~G~~~~v~~yG~~~sGKt~t~ 62 (151)
+.++..+=...+ .|+.-.+++-|++|.||+..+
T Consensus 30 dtI~~Qm~~k~mk~GF~FNIMVVgqSglgkstli 63 (336)
T KOG1547|consen 30 DTIIEQMRKKTMKTGFDFNIMVVGQSGLGKSTLI 63 (336)
T ss_pred HHHHHHHHHHHHhccCceEEEEEecCCCCchhhH
Confidence 344444444444 599999999999999998655
No 363
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=47.59 E-value=23 Score=33.17 Aligned_cols=18 Identities=33% Similarity=0.488 Sum_probs=14.2
Q ss_pred CeeEEeeccCCCCCceee
Q psy12524 45 NACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 45 ~~~v~~yG~~~sGKt~t~ 62 (151)
...+.-.|.||+|||..+
T Consensus 30 ~~l~~I~G~tGaGKStil 47 (1047)
T PRK10246 30 NGLFAITGPTGAGKTTLL 47 (1047)
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 445677899999998765
No 364
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=47.54 E-value=21 Score=32.52 Aligned_cols=27 Identities=22% Similarity=0.255 Sum_probs=19.6
Q ss_pred HHHHHHhhcCCCeeEEeeccCCCCCceee
Q psy12524 34 RDILDNAFQGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 34 ~~lv~~~~~G~~~~v~~yG~~~sGKt~t~ 62 (151)
..+++.+.++. .++..|.||||||..+
T Consensus 11 ~~i~~~l~~~~--~vvv~A~TGSGKTt~~ 37 (812)
T PRK11664 11 PELLTALKTAP--QVLLKAPTGAGKSTWL 37 (812)
T ss_pred HHHHHHHHhCC--CEEEEcCCCCCHHHHH
Confidence 55665654443 4678999999999776
No 365
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=47.50 E-value=24 Score=29.75 Aligned_cols=17 Identities=41% Similarity=0.733 Sum_probs=14.4
Q ss_pred eeEEeeccCCCCCceee
Q psy12524 46 ACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 46 ~~v~~yG~~~sGKt~t~ 62 (151)
..++..|.+|+|||.++
T Consensus 224 ~vi~lvGptGvGKTTta 240 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSI 240 (432)
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45677799999999988
No 366
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=47.47 E-value=5 Score=30.37 Aligned_cols=13 Identities=38% Similarity=0.391 Sum_probs=11.0
Q ss_pred eeccCCCCCceee
Q psy12524 50 AYGQTGSGKSYTM 62 (151)
Q Consensus 50 ~yG~~~sGKt~t~ 62 (151)
.-|.+|||||.++
T Consensus 4 I~G~sGSGKTTla 16 (220)
T cd02025 4 IAGSVAVGKSTTA 16 (220)
T ss_pred eeCCCCCCHHHHH
Confidence 3499999999887
No 367
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=47.44 E-value=17 Score=31.57 Aligned_cols=26 Identities=27% Similarity=0.506 Sum_probs=19.0
Q ss_pred HHHHHhhcCCCeeEEeeccCCCCCceee
Q psy12524 35 DILDNAFQGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 35 ~lv~~~~~G~~~~v~~yG~~~sGKt~t~ 62 (151)
..++.+++|.++ ++.-+||+|||...
T Consensus 20 ~~i~~il~g~dv--lv~~PTG~GKTl~y 45 (591)
T TIGR01389 20 EIISHVLDGRDV--LVVMPTGGGKSLCY 45 (591)
T ss_pred HHHHHHHcCCCE--EEEcCCCccHhHHH
Confidence 345566788875 55569999999864
No 368
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=47.30 E-value=7.6 Score=28.25 Aligned_cols=16 Identities=38% Similarity=0.465 Sum_probs=13.5
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
.+...|.+|||||..+
T Consensus 5 ~i~l~G~sGsGKSTl~ 20 (176)
T PRK09825 5 SYILMGVSGSGKSLIG 20 (176)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4677899999999866
No 369
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=47.30 E-value=24 Score=32.32 Aligned_cols=37 Identities=24% Similarity=0.464 Sum_probs=0.0
Q ss_pred CHHHHHHHHhHHHHHHhhcCCC------eeEEeeccCCCCCcee
Q psy12524 24 SQEKVFDALGRDILDNAFQGYN------ACIFAYGQTGSGKSYT 61 (151)
Q Consensus 24 ~q~~vy~~~~~~lv~~~~~G~~------~~v~~yG~~~sGKt~t 61 (151)
.|++.-+.+ ...+..+..|.+ ++++..|++|+|||++
T Consensus 570 GQ~~Av~~v-~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~l 612 (852)
T TIGR03345 570 GQDHALEAI-AERIRTARAGLEDPRKPLGVFLLVGPSGVGKTET 612 (852)
T ss_pred ChHHHHHHH-HHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHH
No 370
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=47.25 E-value=8.2 Score=28.73 Aligned_cols=17 Identities=35% Similarity=0.581 Sum_probs=13.9
Q ss_pred eeEEeeccCCCCCceee
Q psy12524 46 ACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 46 ~~v~~yG~~~sGKt~t~ 62 (151)
..+...|++|||||..+
T Consensus 29 ~~~~i~G~NGsGKSTll 45 (213)
T cd03279 29 GLFLICGPTGAGKSTIL 45 (213)
T ss_pred CEEEEECCCCCCHHHHH
Confidence 35667899999999877
No 371
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=46.97 E-value=12 Score=34.10 Aligned_cols=32 Identities=19% Similarity=0.194 Sum_probs=21.5
Q ss_pred hHHHHHHhhcCCCeeEEeeccCCCCCceeecc
Q psy12524 33 GRDILDNAFQGYNACIFAYGQTGSGKSYTMMG 64 (151)
Q Consensus 33 ~~~lv~~~~~G~~~~v~~yG~~~sGKt~t~~G 64 (151)
+..+++-+..+.-.+++.+|.+|+|||..+.|
T Consensus 182 i~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~ 213 (852)
T TIGR03346 182 IRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEG 213 (852)
T ss_pred HHHHHHHHhcCCCCceEEEcCCCCCHHHHHHH
Confidence 34444443344445567799999999998854
No 372
>PRK00279 adk adenylate kinase; Reviewed
Probab=46.89 E-value=10 Score=28.24 Aligned_cols=15 Identities=27% Similarity=0.543 Sum_probs=12.7
Q ss_pred EEeeccCCCCCceee
Q psy12524 48 IFAYGQTGSGKSYTM 62 (151)
Q Consensus 48 v~~yG~~~sGKt~t~ 62 (151)
|+.+|..|||||...
T Consensus 3 I~v~G~pGsGKsT~a 17 (215)
T PRK00279 3 LILLGPPGAGKGTQA 17 (215)
T ss_pred EEEECCCCCCHHHHH
Confidence 788999999998653
No 373
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=46.66 E-value=8.8 Score=29.70 Aligned_cols=20 Identities=40% Similarity=0.697 Sum_probs=16.9
Q ss_pred CCCeeEEeeccCCCCCceee
Q psy12524 43 GYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 43 G~~~~v~~yG~~~sGKt~t~ 62 (151)
.....|+..|.+|+||+.++
T Consensus 29 ~~~~~IllvG~tGvGKSSli 48 (249)
T cd01853 29 DFSLTILVLGKTGVGKSSTI 48 (249)
T ss_pred cCCeEEEEECCCCCcHHHHH
Confidence 35668899999999999886
No 374
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=46.61 E-value=22 Score=31.90 Aligned_cols=17 Identities=29% Similarity=0.403 Sum_probs=14.4
Q ss_pred eeEEeeccCCCCCceee
Q psy12524 46 ACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 46 ~~v~~yG~~~sGKt~t~ 62 (151)
++++.+|++|+|||++.
T Consensus 485 ~~~lf~Gp~GvGKT~lA 501 (731)
T TIGR02639 485 GSFLFTGPTGVGKTELA 501 (731)
T ss_pred eeEEEECCCCccHHHHH
Confidence 46788999999999765
No 375
>KOG0340|consensus
Probab=46.57 E-value=13 Score=30.73 Aligned_cols=28 Identities=21% Similarity=0.387 Sum_probs=22.6
Q ss_pred HHHHHhhcCCCeeEEeeccCCCCCceeecc
Q psy12524 35 DILDNAFQGYNACIFAYGQTGSGKSYTMMG 64 (151)
Q Consensus 35 ~lv~~~~~G~~~~v~~yG~~~sGKt~t~~G 64 (151)
.+|..+++|.+| +....||||||.-+-.
T Consensus 36 ~cIpkILeGrdc--ig~AkTGsGKT~AFaL 63 (442)
T KOG0340|consen 36 ACIPKILEGRDC--IGCAKTGSGKTAAFAL 63 (442)
T ss_pred hhhHHHhccccc--ccccccCCCcchhhhH
Confidence 456678999998 5677999999988855
No 376
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=46.50 E-value=7.4 Score=28.45 Aligned_cols=16 Identities=38% Similarity=0.536 Sum_probs=13.4
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
.+...|++|+|||..+
T Consensus 23 ~~~l~G~nG~GKSTLl 38 (176)
T cd03238 23 LVVVTGVSGSGKSTLV 38 (176)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3466799999999888
No 377
>PRK05480 uridine/cytidine kinase; Provisional
Probab=46.36 E-value=9.7 Score=28.10 Aligned_cols=18 Identities=33% Similarity=0.327 Sum_probs=13.9
Q ss_pred CeeEEeeccCCCCCceee
Q psy12524 45 NACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 45 ~~~v~~yG~~~sGKt~t~ 62 (151)
...|..-|.+|||||...
T Consensus 6 ~~iI~I~G~sGsGKTTl~ 23 (209)
T PRK05480 6 PIIIGIAGGSGSGKTTVA 23 (209)
T ss_pred CEEEEEECCCCCCHHHHH
Confidence 345667799999999766
No 378
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=46.35 E-value=7.4 Score=26.78 Aligned_cols=15 Identities=40% Similarity=0.651 Sum_probs=13.3
Q ss_pred EEeeccCCCCCceee
Q psy12524 48 IFAYGQTGSGKSYTM 62 (151)
Q Consensus 48 v~~yG~~~sGKt~t~ 62 (151)
|+..|..++|||..+
T Consensus 3 v~v~G~~~~GKTtli 17 (164)
T smart00175 3 IILIGDSGVGKSSLL 17 (164)
T ss_pred EEEECCCCCCHHHHH
Confidence 678899999999877
No 379
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=46.07 E-value=10 Score=26.59 Aligned_cols=16 Identities=38% Similarity=0.459 Sum_probs=13.5
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
.|...|..|||||...
T Consensus 2 iI~i~G~~GSGKstia 17 (171)
T TIGR02173 2 IITISGPPGSGKTTVA 17 (171)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3678899999999776
No 380
>KOG0735|consensus
Probab=45.98 E-value=9.5 Score=34.47 Aligned_cols=42 Identities=21% Similarity=0.350 Sum_probs=29.9
Q ss_pred CCCeeEEeeccCCCCCceeecc--------------CC---CCCCcHHHHHHHHHHHHH
Q psy12524 43 GYNACIFAYGQTGSGKSYTMMG--------------SQ---DNKGIIPRLCDSLFDLIA 84 (151)
Q Consensus 43 G~~~~v~~yG~~~sGKt~t~~G--------------~~---~~~Gli~~~~~~lf~~~~ 84 (151)
...+.|+.||.+|+|||+..-- +. ...|--...+++||.+.+
T Consensus 699 r~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyIGaSEq~vR~lF~rA~ 757 (952)
T KOG0735|consen 699 RLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYIGASEQNVRDLFERAQ 757 (952)
T ss_pred ccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHhcccHHHHHHHHHHhh
Confidence 3456789999999999997632 10 124666778889998755
No 381
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=45.92 E-value=11 Score=26.99 Aligned_cols=16 Identities=31% Similarity=0.391 Sum_probs=13.4
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
.++..|.+|||||...
T Consensus 4 ~i~l~G~~gsGKst~a 19 (175)
T cd00227 4 IIILNGGSSAGKSSIA 19 (175)
T ss_pred EEEEECCCCCCHHHHH
Confidence 5788899999998655
No 382
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=45.90 E-value=8.6 Score=26.10 Aligned_cols=16 Identities=25% Similarity=0.362 Sum_probs=13.1
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
.+...|.+|+|||..+
T Consensus 5 ~i~~~G~~g~GKttl~ 20 (168)
T cd04163 5 FVAIVGRPNVGKSTLL 20 (168)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4667799999998766
No 383
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=45.64 E-value=8.9 Score=29.40 Aligned_cols=16 Identities=25% Similarity=0.569 Sum_probs=13.8
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
.|.+.|++|+|||..+
T Consensus 33 ~vv~lGpSGcGKTTLL 48 (259)
T COG4525 33 LVVVLGPSGCGKTTLL 48 (259)
T ss_pred EEEEEcCCCccHHHHH
Confidence 5688999999999766
No 384
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=45.64 E-value=25 Score=31.72 Aligned_cols=41 Identities=24% Similarity=0.264 Sum_probs=29.2
Q ss_pred CCCeeEEeeccCCCCCceeecc---------C-----CCCCCcHHHHHHHHHHHH
Q psy12524 43 GYNACIFAYGQTGSGKSYTMMG---------S-----QDNKGIIPRLCDSLFDLI 83 (151)
Q Consensus 43 G~~~~v~~yG~~~sGKt~t~~G---------~-----~~~~Gli~~~~~~lf~~~ 83 (151)
|.....+.+|.||||||-..+. . -++.++.|++++.+-.+.
T Consensus 215 ~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rF 269 (730)
T COG1198 215 GGFAPFLLDGVTGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARF 269 (730)
T ss_pred ccccceeEeCCCCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHh
Confidence 4455677899999999976633 1 256788888887765544
No 385
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=45.58 E-value=12 Score=27.14 Aligned_cols=23 Identities=30% Similarity=0.497 Sum_probs=17.4
Q ss_pred HHhhcCCCeeEEeeccCCCCCceee
Q psy12524 38 DNAFQGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 38 ~~~~~G~~~~v~~yG~~~sGKt~t~ 62 (151)
...+.+ -+++..|++|.||+..+
T Consensus 30 ~~~l~~--k~~vl~G~SGvGKSSLi 52 (161)
T PF03193_consen 30 KELLKG--KTSVLLGQSGVGKSSLI 52 (161)
T ss_dssp HHHHTT--SEEEEECSTTSSHHHHH
T ss_pred HHHhcC--CEEEEECCCCCCHHHHH
Confidence 345555 46677899999999877
No 386
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=45.52 E-value=10 Score=33.82 Aligned_cols=20 Identities=20% Similarity=0.366 Sum_probs=15.7
Q ss_pred CeeEEeeccCCCCCceeecc
Q psy12524 45 NACIFAYGQTGSGKSYTMMG 64 (151)
Q Consensus 45 ~~~v~~yG~~~sGKt~t~~G 64 (151)
.+.++..+..|||||.||..
T Consensus 17 ~g~~lV~AgaGSGKT~~L~~ 36 (715)
T TIGR01075 17 PGNLLVLAGAGSGKTRVLTH 36 (715)
T ss_pred CCCEEEEecCCCCHHHHHHH
Confidence 34567778999999999943
No 387
>PRK13767 ATP-dependent helicase; Provisional
Probab=45.42 E-value=17 Score=33.30 Aligned_cols=24 Identities=29% Similarity=0.422 Sum_probs=17.0
Q ss_pred HHHhhcCCCeeEEeeccCCCCCceee
Q psy12524 37 LDNAFQGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 37 v~~~~~G~~~~v~~yG~~~sGKt~t~ 62 (151)
++.+++|.|+ +...+||||||...
T Consensus 41 i~~il~g~nv--li~APTGSGKTlaa 64 (876)
T PRK13767 41 IPLIHEGKNV--LISSPTGSGKTLAA 64 (876)
T ss_pred HHHHHcCCCE--EEECCCCCcHHHHH
Confidence 3445678875 44569999999864
No 388
>PRK14738 gmk guanylate kinase; Provisional
Probab=45.28 E-value=10 Score=28.19 Aligned_cols=19 Identities=21% Similarity=0.338 Sum_probs=14.9
Q ss_pred CCeeEEeeccCCCCCceee
Q psy12524 44 YNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 44 ~~~~v~~yG~~~sGKt~t~ 62 (151)
....++..|++|+||+..+
T Consensus 12 ~~~~ivi~GpsG~GK~tl~ 30 (206)
T PRK14738 12 KPLLVVISGPSGVGKDAVL 30 (206)
T ss_pred CCeEEEEECcCCCCHHHHH
Confidence 3445677899999999866
No 389
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=45.26 E-value=8.1 Score=26.10 Aligned_cols=15 Identities=33% Similarity=0.375 Sum_probs=12.3
Q ss_pred EEeeccCCCCCceee
Q psy12524 48 IFAYGQTGSGKSYTM 62 (151)
Q Consensus 48 v~~yG~~~sGKt~t~ 62 (151)
+...|.+|+|||..+
T Consensus 2 i~i~G~~~~GKssl~ 16 (159)
T cd04159 2 ITLVGLQNSGKTTLV 16 (159)
T ss_pred EEEEcCCCCCHHHHH
Confidence 456799999999776
No 390
>TIGR00929 VirB4_CagE type IV secretion/conjugal transfer ATPase, VirB4 family. Type IV secretion systems are found in Gram-negative pathogens. They export proteins, DNA, or complexes in different systems and are related to plasmid conjugation systems. This model represents related ATPases that include VirB4 in Agrobacterium tumefaciens (DNA export) CagE in Helicobacter pylori (protein export) and plasmid TraB (conjugation).
Probab=45.17 E-value=8.4 Score=34.39 Aligned_cols=18 Identities=33% Similarity=0.565 Sum_probs=16.2
Q ss_pred CeeEEeeccCCCCCceee
Q psy12524 45 NACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 45 ~~~v~~yG~~~sGKt~t~ 62 (151)
|...+..|.+|+|||.++
T Consensus 434 ~~n~~I~G~tGsGKS~~~ 451 (785)
T TIGR00929 434 LGHTLIFGPTGSGKTTLL 451 (785)
T ss_pred CceEEEECCCCCCHHHHH
Confidence 677889999999999988
No 391
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=45.17 E-value=10 Score=33.88 Aligned_cols=20 Identities=20% Similarity=0.363 Sum_probs=15.7
Q ss_pred CeeEEeeccCCCCCceeecc
Q psy12524 45 NACIFAYGQTGSGKSYTMMG 64 (151)
Q Consensus 45 ~~~v~~yG~~~sGKt~t~~G 64 (151)
...++..+..|||||.+|..
T Consensus 22 ~g~~lV~AgaGSGKT~vl~~ 41 (721)
T PRK11773 22 LGNMLVLAGAGSGKTRVLVH 41 (721)
T ss_pred CCCEEEEecCCCCHHHHHHH
Confidence 44567778899999999943
No 392
>PRK02496 adk adenylate kinase; Provisional
Probab=45.15 E-value=11 Score=27.11 Aligned_cols=15 Identities=27% Similarity=0.519 Sum_probs=12.7
Q ss_pred EEeeccCCCCCceee
Q psy12524 48 IFAYGQTGSGKSYTM 62 (151)
Q Consensus 48 v~~yG~~~sGKt~t~ 62 (151)
++..|.+|||||...
T Consensus 4 i~i~G~pGsGKst~a 18 (184)
T PRK02496 4 LIFLGPPGAGKGTQA 18 (184)
T ss_pred EEEECCCCCCHHHHH
Confidence 677899999998765
No 393
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=44.86 E-value=11 Score=29.64 Aligned_cols=17 Identities=35% Similarity=0.548 Sum_probs=14.0
Q ss_pred eeEEeeccCCCCCceee
Q psy12524 46 ACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 46 ~~v~~yG~~~sGKt~t~ 62 (151)
..+...|.+|+|||.|+
T Consensus 73 ~vi~l~G~~G~GKTTt~ 89 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTI 89 (272)
T ss_pred eEEEEECCCCCcHHHHH
Confidence 45556699999999988
No 394
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=44.84 E-value=9.9 Score=26.45 Aligned_cols=19 Identities=26% Similarity=0.419 Sum_probs=16.2
Q ss_pred CCeeEEeeccCCCCCceee
Q psy12524 44 YNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 44 ~~~~v~~yG~~~sGKt~t~ 62 (151)
....++..|..|+|||..+
T Consensus 6 ~~~~v~v~G~~~~GKSsli 24 (169)
T cd04114 6 FLFKIVLIGNAGVGKTCLV 24 (169)
T ss_pred ceeEEEEECCCCCCHHHHH
Confidence 3567889999999999887
No 395
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=44.76 E-value=16 Score=28.68 Aligned_cols=35 Identities=17% Similarity=0.299 Sum_probs=26.4
Q ss_pred HHHHHHhHHHHHHhhcCCCeeEEeeccCCCCCceee
Q psy12524 27 KVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 27 ~vy~~~~~~lv~~~~~G~~~~v~~yG~~~sGKt~t~ 62 (151)
++| .+..||+..+.+.-....+..|+.++|||..+
T Consensus 120 ~v~-Gt~~~li~~ly~~g~lntLiigpP~~GKTTlL 154 (308)
T COG3854 120 QVF-GTANPLIKDLYQNGWLNTLIIGPPQVGKTTLL 154 (308)
T ss_pred hhh-ccchHHHHHHHhcCceeeEEecCCCCChHHHH
Confidence 344 34478999988755555678899999999877
No 396
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=44.73 E-value=10 Score=33.76 Aligned_cols=21 Identities=19% Similarity=0.309 Sum_probs=16.7
Q ss_pred CCeeEEeeccCCCCCceeecc
Q psy12524 44 YNACIFAYGQTGSGKSYTMMG 64 (151)
Q Consensus 44 ~~~~v~~yG~~~sGKt~t~~G 64 (151)
....++..|..|||||.++.-
T Consensus 16 ~~g~~lV~AgaGSGKT~~l~~ 36 (726)
T TIGR01073 16 TEGPLLIMAGAGSGKTRVLTH 36 (726)
T ss_pred CCCCEEEEeCCCCCHHHHHHH
Confidence 345678888999999999943
No 397
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=44.47 E-value=8.3 Score=26.70 Aligned_cols=15 Identities=33% Similarity=0.494 Sum_probs=13.0
Q ss_pred EEeeccCCCCCceee
Q psy12524 48 IFAYGQTGSGKSYTM 62 (151)
Q Consensus 48 v~~yG~~~sGKt~t~ 62 (151)
|...|..|+|||..+
T Consensus 3 i~v~G~~~~GKTsli 17 (164)
T smart00173 3 LVVLGSGGVGKSALT 17 (164)
T ss_pred EEEECCCCCCHHHHH
Confidence 567799999999876
No 398
>PRK05541 adenylylsulfate kinase; Provisional
Probab=44.41 E-value=12 Score=26.71 Aligned_cols=17 Identities=35% Similarity=0.495 Sum_probs=13.8
Q ss_pred eeEEeeccCCCCCceee
Q psy12524 46 ACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 46 ~~v~~yG~~~sGKt~t~ 62 (151)
..++..|.+|||||...
T Consensus 8 ~~I~i~G~~GsGKst~a 24 (176)
T PRK05541 8 YVIWITGLAGSGKTTIA 24 (176)
T ss_pred CEEEEEcCCCCCHHHHH
Confidence 36777899999998766
No 399
>PRK13721 conjugal transfer ATP-binding protein TraC; Provisional
Probab=44.36 E-value=8.6 Score=35.00 Aligned_cols=18 Identities=28% Similarity=0.444 Sum_probs=15.8
Q ss_pred CeeEEeeccCCCCCceee
Q psy12524 45 NACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 45 ~~~v~~yG~~~sGKt~t~ 62 (151)
|...+..|.+|||||.++
T Consensus 449 N~N~~I~G~sGsGKS~l~ 466 (844)
T PRK13721 449 NYNMAVCGTSGAGKTGLI 466 (844)
T ss_pred cccEEEEcCCCCCHHHHH
Confidence 556889999999999988
No 400
>PTZ00110 helicase; Provisional
Probab=44.25 E-value=17 Score=31.38 Aligned_cols=24 Identities=29% Similarity=0.480 Sum_probs=17.9
Q ss_pred HHHhhcCCCeeEEeeccCCCCCceee
Q psy12524 37 LDNAFQGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 37 v~~~~~G~~~~v~~yG~~~sGKt~t~ 62 (151)
+..+++|.+. ++..+||||||...
T Consensus 161 ip~~l~G~dv--I~~ApTGSGKTlay 184 (545)
T PTZ00110 161 WPIALSGRDM--IGIAETGSGKTLAF 184 (545)
T ss_pred HHHHhcCCCE--EEEeCCCChHHHHH
Confidence 4456788865 56679999999753
No 401
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=44.24 E-value=13 Score=29.99 Aligned_cols=16 Identities=38% Similarity=0.383 Sum_probs=14.0
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
.++.+|+|+||||...
T Consensus 5 ~i~I~GPTAsGKT~la 20 (308)
T COG0324 5 LIVIAGPTASGKTALA 20 (308)
T ss_pred EEEEECCCCcCHHHHH
Confidence 4788999999999876
No 402
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=44.14 E-value=12 Score=29.16 Aligned_cols=16 Identities=44% Similarity=0.507 Sum_probs=13.4
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
.++..|.+|||||...
T Consensus 4 liil~G~pGSGKSTla 19 (300)
T PHA02530 4 IILTVGVPGSGKSTWA 19 (300)
T ss_pred EEEEEcCCCCCHHHHH
Confidence 5778899999998764
No 403
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=44.04 E-value=13 Score=28.18 Aligned_cols=18 Identities=28% Similarity=0.379 Sum_probs=15.1
Q ss_pred CeeEEeeccCCCCCceee
Q psy12524 45 NACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 45 ~~~v~~yG~~~sGKt~t~ 62 (151)
...++..|.+|+|||...
T Consensus 24 g~~~~i~G~~G~GKTtl~ 41 (230)
T PRK08533 24 GSLILIEGDESTGKSILS 41 (230)
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 347889999999999884
No 404
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=43.93 E-value=18 Score=32.06 Aligned_cols=16 Identities=38% Similarity=0.640 Sum_probs=14.4
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
.++.+|++|+|||.++
T Consensus 112 illL~GP~GsGKTTl~ 127 (637)
T TIGR00602 112 ILLITGPSGCGKSTTI 127 (637)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788999999999987
No 405
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=43.62 E-value=8.9 Score=32.17 Aligned_cols=18 Identities=33% Similarity=0.405 Sum_probs=15.1
Q ss_pred CeeEEeeccCCCCCceee
Q psy12524 45 NACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 45 ~~~v~~yG~~~sGKt~t~ 62 (151)
...+...|.+|+|||.|+
T Consensus 191 g~vi~lvGpnG~GKTTtl 208 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTT 208 (420)
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 345677899999999999
No 406
>PRK10867 signal recognition particle protein; Provisional
Probab=43.56 E-value=34 Score=28.83 Aligned_cols=18 Identities=33% Similarity=0.508 Sum_probs=15.1
Q ss_pred CeeEEeeccCCCCCceee
Q psy12524 45 NACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 45 ~~~v~~yG~~~sGKt~t~ 62 (151)
...++..|.+|+|||.|.
T Consensus 100 p~vI~~vG~~GsGKTTta 117 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTA 117 (433)
T ss_pred CEEEEEECCCCCcHHHHH
Confidence 456778899999999987
No 407
>KOG0336|consensus
Probab=43.42 E-value=17 Score=30.83 Aligned_cols=20 Identities=40% Similarity=0.542 Sum_probs=15.4
Q ss_pred hhcCCCeeEEeeccCCCCCcee
Q psy12524 40 AFQGYNACIFAYGQTGSGKSYT 61 (151)
Q Consensus 40 ~~~G~~~~v~~yG~~~sGKt~t 61 (151)
+++|.++.-+| +||+|||-.
T Consensus 254 ~LQG~DliGVA--QTgtgKtL~ 273 (629)
T KOG0336|consen 254 LLQGIDLIGVA--QTGTGKTLA 273 (629)
T ss_pred eecCcceEEEE--ecCCCcCHH
Confidence 57888886555 899999854
No 408
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=43.39 E-value=9.2 Score=32.33 Aligned_cols=42 Identities=19% Similarity=0.247 Sum_probs=30.6
Q ss_pred CCCeeEEeeccCCCCCceeecc--C---------------CCCCCcHHHHHHHHHHHHH
Q psy12524 43 GYNACIFAYGQTGSGKSYTMMG--S---------------QDNKGIIPRLCDSLFDLIA 84 (151)
Q Consensus 43 G~~~~v~~yG~~~sGKt~t~~G--~---------------~~~~Gli~~~~~~lf~~~~ 84 (151)
.....++-||+.|+|||.+..- . ...-|-....++.+|....
T Consensus 274 ~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk~vGesek~ir~~F~~A~ 332 (494)
T COG0464 274 RPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSKWVGESEKNIRELFEKAR 332 (494)
T ss_pred CCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhccccchHHHHHHHHHHHHH
Confidence 3444799999999999987722 1 1135777888899998765
No 409
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=43.39 E-value=9.9 Score=31.74 Aligned_cols=18 Identities=44% Similarity=0.580 Sum_probs=14.8
Q ss_pred eeEEeeccCCCCCceeec
Q psy12524 46 ACIFAYGQTGSGKSYTMM 63 (151)
Q Consensus 46 ~~v~~yG~~~sGKt~t~~ 63 (151)
-.+...|++|+|||.++.
T Consensus 207 ~ii~lvGptGvGKTTt~a 224 (407)
T PRK12726 207 RIISLIGQTGVGKTTTLV 224 (407)
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 356778999999999883
No 410
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=43.36 E-value=28 Score=27.59 Aligned_cols=17 Identities=29% Similarity=0.542 Sum_probs=14.6
Q ss_pred eEEeeccCCCCCceeec
Q psy12524 47 CIFAYGQTGSGKSYTMM 63 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~~ 63 (151)
.++..|.+|||||..+.
T Consensus 8 ~i~i~G~~GsGKtt~~~ 24 (288)
T PRK05416 8 LVIVTGLSGAGKSVALR 24 (288)
T ss_pred EEEEECCCCCcHHHHHH
Confidence 57888999999998873
No 411
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=43.25 E-value=24 Score=30.41 Aligned_cols=23 Identities=17% Similarity=0.247 Sum_probs=17.7
Q ss_pred hhcCC-CeeEEeeccCCCCCceee
Q psy12524 40 AFQGY-NACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 40 ~~~G~-~~~v~~yG~~~sGKt~t~ 62 (151)
+..|. ...++.+|+.|+|||.+.
T Consensus 37 i~~~ri~~a~Lf~Gp~G~GKTT~A 60 (507)
T PRK06645 37 ILNDRLAGGYLLTGIRGVGKTTSA 60 (507)
T ss_pred HHcCCCCceEEEECCCCCCHHHHH
Confidence 34444 457899999999999876
No 412
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=43.17 E-value=6.1 Score=28.28 Aligned_cols=13 Identities=46% Similarity=0.588 Sum_probs=10.9
Q ss_pred eccCCCCCceeec
Q psy12524 51 YGQTGSGKSYTMM 63 (151)
Q Consensus 51 yG~~~sGKt~t~~ 63 (151)
.|.+|||||..+.
T Consensus 1 ~G~sGsGKSTla~ 13 (163)
T PRK11545 1 MGVSGSGKSAVAS 13 (163)
T ss_pred CCCCCCcHHHHHH
Confidence 4899999998873
No 413
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=43.11 E-value=9.2 Score=26.77 Aligned_cols=19 Identities=21% Similarity=0.345 Sum_probs=15.9
Q ss_pred CCeeEEeeccCCCCCceee
Q psy12524 44 YNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 44 ~~~~v~~yG~~~sGKt~t~ 62 (151)
....+...|.+|+|||..+
T Consensus 13 ~~~~v~i~G~~g~GKStLl 31 (173)
T cd04155 13 EEPRILILGLDNAGKTTIL 31 (173)
T ss_pred CccEEEEEccCCCCHHHHH
Confidence 3556889999999999877
No 414
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=42.99 E-value=12 Score=27.07 Aligned_cols=16 Identities=38% Similarity=0.364 Sum_probs=13.3
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
.++..|.+|||||...
T Consensus 3 ~ili~G~~~sGKS~~a 18 (170)
T PRK05800 3 LILVTGGARSGKSRFA 18 (170)
T ss_pred EEEEECCCCccHHHHH
Confidence 4788999999998655
No 415
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=42.98 E-value=16 Score=31.36 Aligned_cols=20 Identities=30% Similarity=0.443 Sum_probs=17.0
Q ss_pred CCCeeEEeeccCCCCCceee
Q psy12524 43 GYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 43 G~~~~v~~yG~~~sGKt~t~ 62 (151)
..+..|+.+|.+||||++..
T Consensus 225 ~~~~pvlI~GE~GtGK~~lA 244 (520)
T PRK10820 225 MLDAPLLITGDTGTGKDLLA 244 (520)
T ss_pred CCCCCEEEECCCCccHHHHH
Confidence 45667999999999998876
No 416
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=42.90 E-value=19 Score=26.00 Aligned_cols=24 Identities=21% Similarity=0.263 Sum_probs=17.7
Q ss_pred HhhcC-CCeeEEeeccCCCCCceee
Q psy12524 39 NAFQG-YNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 39 ~~~~G-~~~~v~~yG~~~sGKt~t~ 62 (151)
.+-.| ...+++-||+.|+|||..+
T Consensus 7 ~i~~~~~~~~~L~~G~~G~gkt~~a 31 (188)
T TIGR00678 7 ALEKGRLAHAYLFAGPEGVGKELLA 31 (188)
T ss_pred HHHcCCCCeEEEEECCCCCCHHHHH
Confidence 33344 4567889999999998665
No 417
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=42.82 E-value=14 Score=26.67 Aligned_cols=17 Identities=41% Similarity=0.507 Sum_probs=14.4
Q ss_pred eeEEeeccCCCCCceee
Q psy12524 46 ACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 46 ~~v~~yG~~~sGKt~t~ 62 (151)
..|+..|.+|+|||...
T Consensus 5 ~~I~liG~~GaGKStl~ 21 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIG 21 (172)
T ss_pred CEEEEECCCCcCHHHHH
Confidence 35888999999998766
No 418
>PLN02200 adenylate kinase family protein
Probab=42.81 E-value=14 Score=28.26 Aligned_cols=19 Identities=32% Similarity=0.391 Sum_probs=15.3
Q ss_pred CCeeEEeeccCCCCCceee
Q psy12524 44 YNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 44 ~~~~v~~yG~~~sGKt~t~ 62 (151)
....++..|.+||||+...
T Consensus 42 ~~~ii~I~G~PGSGKsT~a 60 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQC 60 (234)
T ss_pred CCEEEEEECCCCCCHHHHH
Confidence 3456889999999998764
No 419
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=42.79 E-value=22 Score=28.25 Aligned_cols=17 Identities=35% Similarity=0.259 Sum_probs=13.3
Q ss_pred eeEEeeccCCCCCceee
Q psy12524 46 ACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 46 ~~v~~yG~~~sGKt~t~ 62 (151)
-.+-..|.+|||||.++
T Consensus 63 ~IIGIaG~~GSGKSTla 79 (290)
T TIGR00554 63 YIISIAGSVAVGKSTTA 79 (290)
T ss_pred EEEEEECCCCCCHHHHH
Confidence 34455699999999887
No 420
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=42.77 E-value=12 Score=25.40 Aligned_cols=15 Identities=33% Similarity=0.508 Sum_probs=13.0
Q ss_pred EEeeccCCCCCceee
Q psy12524 48 IFAYGQTGSGKSYTM 62 (151)
Q Consensus 48 v~~yG~~~sGKt~t~ 62 (151)
++..|..|+|||..+
T Consensus 2 i~i~G~~~~GKTsli 16 (160)
T cd00876 2 VVVLGAGGVGKSAIT 16 (160)
T ss_pred EEEECCCCCCHHHHH
Confidence 567899999999876
No 421
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=42.72 E-value=9.4 Score=26.29 Aligned_cols=15 Identities=27% Similarity=0.490 Sum_probs=12.6
Q ss_pred EEeeccCCCCCceee
Q psy12524 48 IFAYGQTGSGKSYTM 62 (151)
Q Consensus 48 v~~yG~~~sGKt~t~ 62 (151)
|+..|..|+|||..+
T Consensus 2 i~i~G~~~~GKTsl~ 16 (160)
T cd04156 2 VLLLGLDSAGKSTLL 16 (160)
T ss_pred EEEEcCCCCCHHHHH
Confidence 456799999999876
No 422
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=42.71 E-value=20 Score=32.25 Aligned_cols=26 Identities=27% Similarity=0.284 Sum_probs=18.8
Q ss_pred HHHHHhhcCCCeeEEeeccCCCCCceee
Q psy12524 35 DILDNAFQGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 35 ~lv~~~~~G~~~~v~~yG~~~sGKt~t~ 62 (151)
..+..+++|.|..+ --+||||||...
T Consensus 43 ~ai~~il~G~nvvv--~apTGSGKTla~ 68 (742)
T TIGR03817 43 RAAELAHAGRHVVV--ATGTASGKSLAY 68 (742)
T ss_pred HHHHHHHCCCCEEE--ECCCCCcHHHHH
Confidence 34556788998644 448999999764
No 423
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=42.70 E-value=9.4 Score=28.24 Aligned_cols=16 Identities=38% Similarity=0.457 Sum_probs=13.5
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
.+...|.+|+|||..+
T Consensus 24 ~~~i~G~nGsGKStll 39 (197)
T cd03278 24 LTAIVGPNGSGKSNII 39 (197)
T ss_pred cEEEECCCCCCHHHHH
Confidence 3457899999999887
No 424
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=42.53 E-value=24 Score=30.22 Aligned_cols=23 Identities=22% Similarity=0.215 Sum_probs=17.3
Q ss_pred hhcCCC-eeEEeeccCCCCCceee
Q psy12524 40 AFQGYN-ACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 40 ~~~G~~-~~v~~yG~~~sGKt~t~ 62 (151)
+-.|.- -.++.+|..|+|||.+.
T Consensus 29 ~~~~ri~ha~Lf~Gp~G~GKTT~A 52 (491)
T PRK14964 29 FTLNKIPQSILLVGASGVGKTTCA 52 (491)
T ss_pred HHcCCCCceEEEECCCCccHHHHH
Confidence 334543 37999999999999855
No 425
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=42.50 E-value=9.6 Score=25.83 Aligned_cols=16 Identities=25% Similarity=0.370 Sum_probs=13.3
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
.+...|.+|+|||..+
T Consensus 3 ~i~l~G~~~~GKstli 18 (157)
T cd04164 3 KVVIVGKPNVGKSSLL 18 (157)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678899999999766
No 426
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=42.50 E-value=14 Score=28.50 Aligned_cols=18 Identities=33% Similarity=0.532 Sum_probs=14.8
Q ss_pred CeeEEeeccCCCCCceee
Q psy12524 45 NACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 45 ~~~v~~yG~~~sGKt~t~ 62 (151)
...+...|.+|||||..+
T Consensus 30 Ge~~~i~G~nGsGKSTL~ 47 (235)
T COG1122 30 GERVLLIGPNGSGKSTLL 47 (235)
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 346688999999999876
No 427
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=42.48 E-value=12 Score=28.50 Aligned_cols=15 Identities=40% Similarity=0.426 Sum_probs=13.1
Q ss_pred EEeeccCCCCCceee
Q psy12524 48 IFAYGQTGSGKSYTM 62 (151)
Q Consensus 48 v~~yG~~~sGKt~t~ 62 (151)
|+..|..|||||...
T Consensus 2 Ivl~G~pGSGKST~a 16 (249)
T TIGR03574 2 IILTGLPGVGKSTFS 16 (249)
T ss_pred EEEEcCCCCCHHHHH
Confidence 678899999999876
No 428
>PF13337 Lon_2: Putative ATP-dependent Lon protease
Probab=42.45 E-value=26 Score=29.82 Aligned_cols=32 Identities=25% Similarity=0.362 Sum_probs=22.2
Q ss_pred HHHHHHHhHHHHHHhhcCCCeeEEeeccCCCCCceee
Q psy12524 26 EKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 26 ~~vy~~~~~~lv~~~~~G~~~~v~~yG~~~sGKt~t~ 62 (151)
...+=.-+-|+|+ .|..++=.|+.||||||..
T Consensus 194 Kl~~L~RLiPlVE-----~N~NliELgPrGTGKS~vy 225 (457)
T PF13337_consen 194 KLLLLARLIPLVE-----RNYNLIELGPRGTGKSYVY 225 (457)
T ss_pred HHHHHHhHHHhcc-----cccceEEEcCCCCCceeeh
Confidence 3333344446554 3667789999999999986
No 429
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=42.44 E-value=13 Score=26.96 Aligned_cols=15 Identities=40% Similarity=0.421 Sum_probs=12.3
Q ss_pred EEeeccCCCCCceee
Q psy12524 48 IFAYGQTGSGKSYTM 62 (151)
Q Consensus 48 v~~yG~~~sGKt~t~ 62 (151)
++..|.+|||||...
T Consensus 2 ~li~G~~~sGKS~~a 16 (169)
T cd00544 2 ILVTGGARSGKSRFA 16 (169)
T ss_pred EEEECCCCCCHHHHH
Confidence 567899999998654
No 430
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=42.40 E-value=16 Score=34.08 Aligned_cols=27 Identities=26% Similarity=0.315 Sum_probs=20.2
Q ss_pred HHHHhhcCCCeeEEeeccCCCCCceeec
Q psy12524 36 ILDNAFQGYNACIFAYGQTGSGKSYTMM 63 (151)
Q Consensus 36 lv~~~~~G~~~~v~~yG~~~sGKt~t~~ 63 (151)
.|..++.+.+. ++.-|..|||||++|.
T Consensus 354 Av~~il~s~~v-~vv~G~AGTGKTT~l~ 380 (988)
T PRK13889 354 ALAHVTDGRDL-GVVVGYAGTGKSAMLG 380 (988)
T ss_pred HHHHHhcCCCe-EEEEeCCCCCHHHHHH
Confidence 45566766664 4588999999999873
No 431
>KOG3347|consensus
Probab=42.37 E-value=13 Score=27.21 Aligned_cols=17 Identities=35% Similarity=0.503 Sum_probs=14.8
Q ss_pred eeEEeeccCCCCCceee
Q psy12524 46 ACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 46 ~~v~~yG~~~sGKt~t~ 62 (151)
-.|+..|.+|+|||.+.
T Consensus 8 PNILvtGTPG~GKstl~ 24 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLA 24 (176)
T ss_pred CCEEEeCCCCCCchhHH
Confidence 46889999999999876
No 432
>KOG0922|consensus
Probab=42.35 E-value=16 Score=32.35 Aligned_cols=19 Identities=42% Similarity=0.635 Sum_probs=15.9
Q ss_pred CCeeEEeeccCCCCCceee
Q psy12524 44 YNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 44 ~~~~v~~yG~~~sGKt~t~ 62 (151)
.|..++.-|.||||||.-+
T Consensus 65 ~nqvlIviGeTGsGKSTQi 83 (674)
T KOG0922|consen 65 DNQVLIVIGETGSGKSTQI 83 (674)
T ss_pred HCCEEEEEcCCCCCccccH
Confidence 4667788999999998766
No 433
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=42.29 E-value=18 Score=31.23 Aligned_cols=21 Identities=24% Similarity=0.517 Sum_probs=17.6
Q ss_pred cCCCeeEEeeccCCCCCceee
Q psy12524 42 QGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 42 ~G~~~~v~~yG~~~sGKt~t~ 62 (151)
...+..|+..|.+||||+...
T Consensus 232 A~~~~pVLI~GE~GTGKe~lA 252 (526)
T TIGR02329 232 ARSDATVLILGESGTGKELVA 252 (526)
T ss_pred hCCCCcEEEECCCCcCHHHHH
Confidence 456778999999999997765
No 434
>cd03071 PDI_b'_NRX PDIb' family, NRX subgroup, redox inactive TRX-like domain b'; composed of vertebrate nucleoredoxins (NRX). NRX is a 400-amino acid nuclear protein with one redox active TRX domain followed by one redox inactive TRX-like domain homologous to the b' domain of PDI. In vitro studies show that NRX has thiol oxidoreductase activity and that it may be involved in the redox regulation of transcription, in a manner different from that of TRX or glutaredoxin. NRX enhances the activation of NF-kB by TNFalpha, as well as PMA-1 induced AP-1 and FK-induced CREB activation. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. The mouse NRX gene is implicated in streptozotocin-induced diabetes. Similar to PDI, the b' domain of NRX is likely involved in substrate recognition.
Probab=42.24 E-value=7.1 Score=26.57 Aligned_cols=74 Identities=9% Similarity=0.164 Sum_probs=49.3
Q ss_pred CcHHHHHHHHHHHHHhhcCCCceEEEEEEEEEEE---CCeeeecCCCCCCCceeeEEecCCCCeEEcCceEEEcCCHHHH
Q psy12524 70 GIIPRLCDSLFDLIAKQESSELTYKVEVSYMEIY---NEKVHDLLDPKANKQSLKVREHNVLGPYVDGLSQLAVTSFQAR 146 (151)
Q Consensus 70 Gli~~~~~~lf~~~~~~~~~~~~~~v~~S~~eiy---~e~v~DLL~~~~~~~~l~i~e~~~~g~~v~gl~~~~v~s~~e~ 146 (151)
-+++.+.+.++..-....... . ..-++..- -+.++|++|-......|-+.+-+.++.||-...+++..+++++
T Consensus 35 ~llQpiAd~~~aka~~k~~da-p---~~f~~a~ede~tdsLRDf~nL~d~~P~LviLDip~r~~~v~~~eeIT~e~~~~f 110 (116)
T cd03071 35 QLIQPIAEKIIAKYKAKEEEA-P---LLFFVAGEDDMTDSLRDYTNLPEAAPLLTILDMSARAKYVMDVEEITPAIVEAF 110 (116)
T ss_pred HHHHHHHHHHHHHhhccCCCc-c---eeeeeeccchHHHHHHHhcCCCccCceEEEEeccccceEeCchHhcCHHHHHHH
Confidence 466666777666544333222 1 11122222 2346888887766677999999999999999999998888877
Q ss_pred h
Q psy12524 147 A 147 (151)
Q Consensus 147 ~ 147 (151)
.
T Consensus 111 v 111 (116)
T cd03071 111 V 111 (116)
T ss_pred H
Confidence 5
No 435
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=42.21 E-value=14 Score=29.64 Aligned_cols=16 Identities=38% Similarity=0.437 Sum_probs=13.6
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
.++..|+||||||...
T Consensus 6 ~i~i~GptgsGKt~la 21 (307)
T PRK00091 6 VIVIVGPTASGKTALA 21 (307)
T ss_pred EEEEECCCCcCHHHHH
Confidence 5778899999998765
No 436
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=42.19 E-value=18 Score=32.08 Aligned_cols=21 Identities=24% Similarity=0.502 Sum_probs=17.4
Q ss_pred cCCCeeEEeeccCCCCCceee
Q psy12524 42 QGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 42 ~G~~~~v~~yG~~~sGKt~t~ 62 (151)
...+..|+..|.+||||++..
T Consensus 396 a~~~~pVLI~GE~GTGK~~lA 416 (686)
T PRK15429 396 AQSDSTVLILGETGTGKELIA 416 (686)
T ss_pred hCCCCCEEEECCCCcCHHHHH
Confidence 355678999999999999765
No 437
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=42.09 E-value=10 Score=28.59 Aligned_cols=16 Identities=38% Similarity=0.468 Sum_probs=13.4
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
.....|++|+|||..|
T Consensus 25 ~~~i~GpNGsGKStll 40 (243)
T cd03272 25 HNVVVGRNGSGKSNFF 40 (243)
T ss_pred cEEEECCCCCCHHHHH
Confidence 4457799999999987
No 438
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=42.04 E-value=16 Score=32.81 Aligned_cols=27 Identities=19% Similarity=0.316 Sum_probs=18.8
Q ss_pred HHHhhcCCCeeEEeeccCCCCCceeecc
Q psy12524 37 LDNAFQGYNACIFAYGQTGSGKSYTMMG 64 (151)
Q Consensus 37 v~~~~~G~~~~v~~yG~~~sGKt~t~~G 64 (151)
+..++.+ +..++.-|..|+|||+++..
T Consensus 361 v~~i~~s-~~~~il~G~aGTGKTtll~~ 387 (744)
T TIGR02768 361 VRHVTGS-GDIAVVVGRAGTGKSTMLKA 387 (744)
T ss_pred HHHHhcC-CCEEEEEecCCCCHHHHHHH
Confidence 3444544 33567889999999998843
No 439
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=41.98 E-value=40 Score=28.44 Aligned_cols=18 Identities=39% Similarity=0.508 Sum_probs=15.3
Q ss_pred CeeEEeeccCCCCCceee
Q psy12524 45 NACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 45 ~~~v~~yG~~~sGKt~t~ 62 (151)
...++..|.+|+|||.|+
T Consensus 100 ~~vi~lvG~~GvGKTTta 117 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTC 117 (429)
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 456778899999999988
No 440
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=41.98 E-value=14 Score=28.48 Aligned_cols=15 Identities=33% Similarity=0.523 Sum_probs=11.8
Q ss_pred EEeeccCCCCCceee
Q psy12524 48 IFAYGQTGSGKSYTM 62 (151)
Q Consensus 48 v~~yG~~~sGKt~t~ 62 (151)
.+.+|+|+||||..-
T Consensus 4 ~~i~GpT~tGKt~~a 18 (233)
T PF01745_consen 4 YLIVGPTGTGKTALA 18 (233)
T ss_dssp EEEE-STTSSHHHHH
T ss_pred EEEECCCCCChhHHH
Confidence 567899999999875
No 441
>KOG0924|consensus
Probab=41.96 E-value=15 Score=33.10 Aligned_cols=20 Identities=35% Similarity=0.551 Sum_probs=17.5
Q ss_pred CCCeeEEeeccCCCCCceee
Q psy12524 43 GYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 43 G~~~~v~~yG~~~sGKt~t~ 62 (151)
+-|..|+..|.||||||.-+
T Consensus 369 r~n~vvvivgETGSGKTTQl 388 (1042)
T KOG0924|consen 369 RENQVVVIVGETGSGKTTQL 388 (1042)
T ss_pred hhCcEEEEEecCCCCchhhh
Confidence 56788999999999999776
No 442
>PRK13949 shikimate kinase; Provisional
Probab=41.94 E-value=14 Score=26.68 Aligned_cols=16 Identities=38% Similarity=0.482 Sum_probs=13.6
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
.|+..|..|||||...
T Consensus 3 ~I~liG~~GsGKstl~ 18 (169)
T PRK13949 3 RIFLVGYMGAGKTTLG 18 (169)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788999999999765
No 443
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=41.93 E-value=13 Score=25.45 Aligned_cols=15 Identities=33% Similarity=0.488 Sum_probs=12.8
Q ss_pred EEeeccCCCCCceee
Q psy12524 48 IFAYGQTGSGKSYTM 62 (151)
Q Consensus 48 v~~yG~~~sGKt~t~ 62 (151)
|..+|.+|+|||..+
T Consensus 3 i~~~G~~~~GKTsl~ 17 (164)
T cd04139 3 VIVVGAGGVGKSALT 17 (164)
T ss_pred EEEECCCCCCHHHHH
Confidence 677899999999865
No 444
>PRK14528 adenylate kinase; Provisional
Probab=41.89 E-value=14 Score=27.04 Aligned_cols=16 Identities=31% Similarity=0.470 Sum_probs=13.5
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
.++..|.+|||||...
T Consensus 3 ~i~i~G~pGsGKtt~a 18 (186)
T PRK14528 3 NIIFMGPPGAGKGTQA 18 (186)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678999999998766
No 445
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=41.77 E-value=16 Score=25.15 Aligned_cols=16 Identities=25% Similarity=0.370 Sum_probs=13.9
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
-++..|.+++|||..+
T Consensus 3 ki~v~G~~~~GKSsli 18 (163)
T cd01860 3 KLVLLGDSSVGKSSLV 18 (163)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4778999999999877
No 446
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=41.71 E-value=17 Score=34.96 Aligned_cols=21 Identities=29% Similarity=0.465 Sum_probs=18.9
Q ss_pred cCCCeeEEeeccCCCCCceee
Q psy12524 42 QGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 42 ~G~~~~v~~yG~~~sGKt~t~ 62 (151)
.+.|.||+.-|.+|+|||-.-
T Consensus 149 ~~eNQtIiISGESGAGKTe~a 169 (1463)
T COG5022 149 EKENQTIIISGESGAGKTENA 169 (1463)
T ss_pred cCCCceEEEecCCCCCchHHH
Confidence 488999999999999999765
No 447
>KOG0987|consensus
Probab=41.71 E-value=29 Score=29.99 Aligned_cols=35 Identities=34% Similarity=0.715 Sum_probs=22.9
Q ss_pred CCHHHHHHHHhHHHHHHhhcCCCeeEEeeccCCCCCceee
Q psy12524 23 ASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 23 ~~q~~vy~~~~~~lv~~~~~G~~~~v~~yG~~~sGKt~t~ 62 (151)
..|..+|+ . ++..+....-..++ ||..|+|||+..
T Consensus 120 ~eqk~v~d-~---~~~~v~~~~g~~ff-~g~~gtgKt~l~ 154 (540)
T KOG0987|consen 120 PEQKRVYD-A---ILEAVENNLGGVFF-YGFGGTGKTYLL 154 (540)
T ss_pred HHHHHHHH-H---HHHHHhccccceee-eccCCccceeeH
Confidence 45666666 2 22334444455566 999999999987
No 448
>PF13166 AAA_13: AAA domain
Probab=41.70 E-value=12 Score=33.09 Aligned_cols=16 Identities=44% Similarity=0.623 Sum_probs=13.0
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
.-+.||.+|||||...
T Consensus 18 ~n~IYG~NGsGKStls 33 (712)
T PF13166_consen 18 INLIYGRNGSGKSTLS 33 (712)
T ss_pred eEEEECCCCCCHHHHH
Confidence 3468999999999655
No 449
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=41.67 E-value=10 Score=33.23 Aligned_cols=17 Identities=29% Similarity=0.466 Sum_probs=14.2
Q ss_pred eeEEeeccCCCCCceee
Q psy12524 46 ACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 46 ~~v~~yG~~~sGKt~t~ 62 (151)
...+..|..|||||+++
T Consensus 161 ~~~vitGgpGTGKTt~v 177 (586)
T TIGR01447 161 NFSLITGGPGTGKTTTV 177 (586)
T ss_pred CeEEEEcCCCCCHHHHH
Confidence 45567899999999987
No 450
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=41.66 E-value=21 Score=28.96 Aligned_cols=37 Identities=27% Similarity=0.328 Sum_probs=24.6
Q ss_pred CCHHHHHHHHhHHHHHHhhcCCCeeEEeeccCCCCCceeec
Q psy12524 23 ASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYTMM 63 (151)
Q Consensus 23 ~~q~~vy~~~~~~lv~~~~~G~~~~v~~yG~~~sGKt~t~~ 63 (151)
..|+++=... +-.+++.....++..|.+|+|||..+.
T Consensus 7 vgq~~~~~al----~~~~~~~~~g~vli~G~~G~gKttl~r 43 (337)
T TIGR02030 7 VGQDEMKLAL----LLNVIDPKIGGVMVMGDRGTGKSTAVR 43 (337)
T ss_pred ccHHHHHHHH----HHHhcCCCCCeEEEEcCCCCCHHHHHH
Confidence 3566554433 334455444568899999999998873
No 451
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=41.64 E-value=9.2 Score=26.83 Aligned_cols=19 Identities=26% Similarity=0.555 Sum_probs=15.4
Q ss_pred eeEEeeccCCCCCceeecc
Q psy12524 46 ACIFAYGQTGSGKSYTMMG 64 (151)
Q Consensus 46 ~~v~~yG~~~sGKt~t~~G 64 (151)
..++..|..|+|||..+.+
T Consensus 23 ~~i~l~G~lGaGKTtl~~~ 41 (133)
T TIGR00150 23 TVVLLKGDLGAGKTTLVQG 41 (133)
T ss_pred CEEEEEcCCCCCHHHHHHH
Confidence 3578899999999988743
No 452
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=41.59 E-value=9.7 Score=25.63 Aligned_cols=16 Identities=31% Similarity=0.520 Sum_probs=13.3
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
.|+..|..++|||..+
T Consensus 2 ~i~~~G~~~~GKStl~ 17 (159)
T cd00154 2 KIVLIGDSGVGKTSLL 17 (159)
T ss_pred eEEEECCCCCCHHHHH
Confidence 3678899999999666
No 453
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=41.50 E-value=1.5e+02 Score=23.56 Aligned_cols=37 Identities=24% Similarity=0.302 Sum_probs=24.6
Q ss_pred HHHHHHHHh---HHHHHHhh-cCCCeeEEeeccCCCCCceee
Q psy12524 25 QEKVFDALG---RDILDNAF-QGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 25 q~~vy~~~~---~~lv~~~~-~G~~~~v~~yG~~~sGKt~t~ 62 (151)
-+++|+... ..++.... +|.+...+|.|.|| ||..++
T Consensus 218 ~~ef~~~l~~~l~~~LP~y~~egks~lTIaIGCTG-GqHRSV 258 (286)
T COG1660 218 VEEFYEKLRDLLEFWLPRYEKEGKSYLTIAIGCTG-GQHRSV 258 (286)
T ss_pred HHHHHHHHHHHHHHHhHHHHhcCCeEEEEEEccCC-CccchH
Confidence 344555442 23343333 59999999999999 887776
No 454
>PTZ00035 Rad51 protein; Provisional
Probab=41.43 E-value=21 Score=28.96 Aligned_cols=29 Identities=21% Similarity=0.311 Sum_probs=21.8
Q ss_pred HHHHHHhhc-CC--CeeEEeeccCCCCCceee
Q psy12524 34 RDILDNAFQ-GY--NACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 34 ~~lv~~~~~-G~--~~~v~~yG~~~sGKt~t~ 62 (151)
.+-++.++. |. ...+..+|.+|||||..+
T Consensus 104 ~~~LD~lLgGGi~~G~iteI~G~~GsGKT~l~ 135 (337)
T PTZ00035 104 STQLDKLLGGGIETGSITELFGEFRTGKTQLC 135 (337)
T ss_pred cHHHHHHhCCCCCCCeEEEEECCCCCchhHHH
Confidence 356677776 43 445678999999999876
No 455
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=41.22 E-value=13 Score=32.97 Aligned_cols=17 Identities=24% Similarity=0.358 Sum_probs=13.4
Q ss_pred eEEeeccCCCCCceeec
Q psy12524 47 CIFAYGQTGSGKSYTMM 63 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~~ 63 (151)
-++..+..|||||.|+.
T Consensus 17 ~~lV~AgpGSGKT~vL~ 33 (672)
T PRK10919 17 PCLVLAGAGSGKTRVIT 33 (672)
T ss_pred CEEEEecCCCCHHHHHH
Confidence 44566789999999984
No 456
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.
Probab=41.18 E-value=14 Score=29.20 Aligned_cols=19 Identities=37% Similarity=0.550 Sum_probs=15.4
Q ss_pred CCeeEEeeccCCCCCceee
Q psy12524 44 YNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 44 ~~~~v~~yG~~~sGKt~t~ 62 (151)
....++.+|..|+||+..+
T Consensus 75 ~~~~~~l~G~g~nGKStl~ 93 (304)
T TIGR01613 75 EQKLFFLYGNGGNGKSTFQ 93 (304)
T ss_pred ceEEEEEECCCCCcHHHHH
Confidence 3456889999999998776
No 457
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=41.18 E-value=19 Score=28.06 Aligned_cols=26 Identities=42% Similarity=0.676 Sum_probs=18.4
Q ss_pred HhhcCCCeeE------EeeccCCCCCce---eecc
Q psy12524 39 NAFQGYNACI------FAYGQTGSGKSY---TMMG 64 (151)
Q Consensus 39 ~~~~G~~~~v------~~yG~~~sGKt~---t~~G 64 (151)
.++.|.|-+| ...|++||||+. ++.|
T Consensus 18 eILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G 52 (251)
T COG0396 18 EILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMG 52 (251)
T ss_pred hhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 4566776665 567999999964 4455
No 458
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=41.13 E-value=35 Score=29.29 Aligned_cols=25 Identities=20% Similarity=0.337 Sum_probs=18.0
Q ss_pred HHhhcCC-CeeEEeeccCCCCCceee
Q psy12524 38 DNAFQGY-NACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 38 ~~~~~G~-~~~v~~yG~~~sGKt~t~ 62 (151)
..+-.|. ..+++.+|+.|+|||.+.
T Consensus 32 ~~i~~~ri~ha~Lf~GP~GtGKTTlA 57 (484)
T PRK14956 32 NALKSGKIGHAYIFFGPRGVGKTTIA 57 (484)
T ss_pred HHHHcCCCCeEEEEECCCCCCHHHHH
Confidence 3334444 346899999999999776
No 459
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=41.11 E-value=11 Score=27.93 Aligned_cols=16 Identities=38% Similarity=0.551 Sum_probs=13.1
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
.+...|.+|||||..+
T Consensus 32 ~~~l~G~nGsGKSTLl 47 (218)
T cd03255 32 FVAIVGPSGSGKSTLL 47 (218)
T ss_pred EEEEEcCCCCCHHHHH
Confidence 4567799999999776
No 460
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=41.10 E-value=1.2e+02 Score=22.01 Aligned_cols=13 Identities=31% Similarity=0.419 Sum_probs=10.8
Q ss_pred eeccCCCCCceee
Q psy12524 50 AYGQTGSGKSYTM 62 (151)
Q Consensus 50 ~yG~~~sGKt~t~ 62 (151)
..|..+||||..+
T Consensus 7 ivG~k~SGKTTLi 19 (161)
T COG1763 7 IVGYKNSGKTTLI 19 (161)
T ss_pred EEecCCCChhhHH
Confidence 3489999999877
No 461
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=41.03 E-value=11 Score=28.27 Aligned_cols=18 Identities=28% Similarity=0.412 Sum_probs=14.0
Q ss_pred CeeEEeeccCCCCCceee
Q psy12524 45 NACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 45 ~~~v~~yG~~~sGKt~t~ 62 (151)
...+...|.+|||||..+
T Consensus 31 Ge~~~l~G~nGsGKSTLl 48 (233)
T cd03258 31 GEIFGIIGRSGAGKSTLI 48 (233)
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 335567799999999776
No 462
>COG1162 Predicted GTPases [General function prediction only]
Probab=41.03 E-value=38 Score=27.21 Aligned_cols=64 Identities=20% Similarity=0.286 Sum_probs=34.5
Q ss_pred HHHhhcCCCeeEEeeccCCCCCceeeccCCCCCCcHHHHHHHHHHHHHhhcCCCceEEEEEEEEEE-ECCeeee
Q psy12524 37 LDNAFQGYNACIFAYGQTGSGKSYTMMGSQDNKGIIPRLCDSLFDLIAKQESSELTYKVEVSYMEI-YNEKVHD 109 (151)
Q Consensus 37 v~~~~~G~~~~v~~yG~~~sGKt~t~~G~~~~~Gli~~~~~~lf~~~~~~~~~~~~~~v~~S~~ei-y~e~v~D 109 (151)
+...+.|. +....|++|-||+..+ .-|.|..-...=. +.+....+...+-...++.+ .+..|.|
T Consensus 158 l~~~l~~~--~svl~GqSGVGKSSLi------N~L~p~~~~~t~e-IS~~~~rGkHTTt~~~l~~l~~gG~iiD 222 (301)
T COG1162 158 LAELLAGK--ITVLLGQSGVGKSTLI------NALLPELNQKTGE-ISEKLGRGRHTTTHVELFPLPGGGWIID 222 (301)
T ss_pred HHHHhcCC--eEEEECCCCCcHHHHH------HhhCchhhhhhhh-hcccCCCCCCccceEEEEEcCCCCEEEe
Confidence 34556666 3445699999999888 4444432222211 22222233344455666666 3555555
No 463
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=41.00 E-value=13 Score=28.57 Aligned_cols=15 Identities=33% Similarity=0.426 Sum_probs=12.8
Q ss_pred EEeeccCCCCCceee
Q psy12524 48 IFAYGQTGSGKSYTM 62 (151)
Q Consensus 48 v~~yG~~~sGKt~t~ 62 (151)
|+.+|..+||||...
T Consensus 2 iLLmG~~~SGKTSi~ 16 (232)
T PF04670_consen 2 ILLMGPRRSGKTSIR 16 (232)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEEcCCCCChhhHH
Confidence 678999999999754
No 464
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=40.81 E-value=11 Score=34.01 Aligned_cols=17 Identities=35% Similarity=0.481 Sum_probs=14.6
Q ss_pred eeEEeeccCCCCCceee
Q psy12524 46 ACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 46 ~~v~~yG~~~sGKt~t~ 62 (151)
..+...|++|+|||.|+
T Consensus 186 ~Vi~lVGpnGvGKTTTi 202 (767)
T PRK14723 186 GVLALVGPTGVGKTTTT 202 (767)
T ss_pred eEEEEECCCCCcHHHHH
Confidence 46677899999999998
No 465
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=40.80 E-value=9.7 Score=27.57 Aligned_cols=19 Identities=32% Similarity=0.564 Sum_probs=16.2
Q ss_pred eeEEeeccCCCCCceeecc
Q psy12524 46 ACIFAYGQTGSGKSYTMMG 64 (151)
Q Consensus 46 ~~v~~yG~~~sGKt~t~~G 64 (151)
+.+..|+.+|.|||+...|
T Consensus 3 G~i~vy~g~G~Gkt~~a~g 21 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALG 21 (159)
T ss_pred CEEEEECCCCCCHHHHHHH
Confidence 4688999999999999855
No 466
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=40.78 E-value=9.7 Score=27.43 Aligned_cols=27 Identities=30% Similarity=0.369 Sum_probs=17.3
Q ss_pred HHHHhhcCC---CeeEEeeccCCCCCceee
Q psy12524 36 ILDNAFQGY---NACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 36 lv~~~~~G~---~~~v~~yG~~~sGKt~t~ 62 (151)
-.+.++.|. ....+.+|.+|+|||..+
T Consensus 20 ~~~~li~g~~~~g~l~~i~g~~g~GKT~~~ 49 (193)
T PF13481_consen 20 PLDWLIDGLLPRGELTLIAGPPGSGKTTLA 49 (193)
T ss_dssp ---EEETTEE-TTSEEEEEECSTSSHHHHH
T ss_pred CcceeECCcccCCeEEEEEeCCCCCHHHHH
Confidence 334455443 235678899999999877
No 467
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=40.74 E-value=27 Score=28.26 Aligned_cols=29 Identities=38% Similarity=0.458 Sum_probs=22.0
Q ss_pred HHHHHHhhc--CC--CeeEEeeccCCCCCceee
Q psy12524 34 RDILDNAFQ--GY--NACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 34 ~~lv~~~~~--G~--~~~v~~yG~~~sGKt~t~ 62 (151)
.+-++.++. |. ...+..||++|||||..+
T Consensus 40 i~~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLa 72 (325)
T cd00983 40 SLSLDIALGIGGYPKGRIIEIYGPESSGKTTLA 72 (325)
T ss_pred CHHHHHHhcCCCccCCeEEEEECCCCCCHHHHH
Confidence 466778776 54 345779999999999766
No 468
>KOG0925|consensus
Probab=40.74 E-value=18 Score=31.42 Aligned_cols=20 Identities=40% Similarity=0.501 Sum_probs=18.0
Q ss_pred CCCeeEEeeccCCCCCceee
Q psy12524 43 GYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 43 G~~~~v~~yG~~~sGKt~t~ 62 (151)
..|.+++.-|.||||||.-+
T Consensus 60 ~~nQ~~v~vGetgsGKttQi 79 (699)
T KOG0925|consen 60 LNNQIIVLVGETGSGKTTQI 79 (699)
T ss_pred hcCceEEEEecCCCCccccC
Confidence 67899999999999999766
No 469
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=40.59 E-value=14 Score=29.53 Aligned_cols=15 Identities=27% Similarity=0.344 Sum_probs=12.3
Q ss_pred EEeeccCCCCCceee
Q psy12524 48 IFAYGQTGSGKSYTM 62 (151)
Q Consensus 48 v~~yG~~~sGKt~t~ 62 (151)
++..++||||||...
T Consensus 2 vvi~apTGsGKT~~~ 16 (358)
T TIGR01587 2 LVIEAPTGYGKTEAA 16 (358)
T ss_pred EEEEeCCCCCHHHHH
Confidence 567789999999764
No 470
>KOG0335|consensus
Probab=40.58 E-value=14 Score=31.55 Aligned_cols=58 Identities=22% Similarity=0.370 Sum_probs=34.7
Q ss_pred hcCCCeeEEeeccCCCCCceeeccC---------CC---------CCCcHH-----HHHHHHHHHHHhhcCCCceEEEEE
Q psy12524 41 FQGYNACIFAYGQTGSGKSYTMMGS---------QD---------NKGIIP-----RLCDSLFDLIAKQESSELTYKVEV 97 (151)
Q Consensus 41 ~~G~~~~v~~yG~~~sGKt~t~~G~---------~~---------~~Gli~-----~~~~~lf~~~~~~~~~~~~~~v~~ 97 (151)
.+|.. ++++++||||||.-...+ .. .|+.+- -.+..||...... .+...+
T Consensus 109 ~~Grd--l~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~nea~k~-----~~~s~~ 181 (482)
T KOG0335|consen 109 SGGRD--LMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQIYNEARKF-----SYLSGM 181 (482)
T ss_pred ecCCc--eEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHHHHHHHhh-----cccccc
Confidence 34444 489999999999887552 00 121111 1345666655422 455677
Q ss_pred EEEEEECC
Q psy12524 98 SYMEIYNE 105 (151)
Q Consensus 98 S~~eiy~e 105 (151)
-...+|+.
T Consensus 182 ~~~~~ygg 189 (482)
T KOG0335|consen 182 KSVVVYGG 189 (482)
T ss_pred eeeeeeCC
Confidence 78888866
No 471
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=40.58 E-value=10 Score=26.33 Aligned_cols=16 Identities=31% Similarity=0.574 Sum_probs=13.5
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
-|+..|..++|||..+
T Consensus 2 ki~viG~~~~GKSsl~ 17 (172)
T cd01862 2 KVIILGDSGVGKTSLM 17 (172)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3678899999999876
No 472
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=40.57 E-value=12 Score=34.39 Aligned_cols=26 Identities=27% Similarity=0.500 Sum_probs=18.6
Q ss_pred CeeEEeeccCCCCCceee-------ccCCCCCC
Q psy12524 45 NACIFAYGQTGSGKSYTM-------MGSQDNKG 70 (151)
Q Consensus 45 ~~~v~~yG~~~sGKt~t~-------~G~~~~~G 70 (151)
....+-.|+||||||..+ +|..+..|
T Consensus 25 ~gi~lI~G~nGsGKSSIldAI~~ALyG~~~~~~ 57 (908)
T COG0419 25 SGIFLIVGPNGAGKSSILDAITFALYGKTPRLG 57 (908)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHcCCCCCcc
Confidence 444567899999998665 67665444
No 473
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=40.55 E-value=20 Score=31.10 Aligned_cols=21 Identities=29% Similarity=0.510 Sum_probs=17.4
Q ss_pred cCCCeeEEeeccCCCCCceee
Q psy12524 42 QGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 42 ~G~~~~v~~yG~~~sGKt~t~ 62 (151)
...+..|+..|.+||||+...
T Consensus 239 A~s~~pVLI~GE~GTGKe~~A 259 (538)
T PRK15424 239 ARSSAAVLIQGETGTGKELAA 259 (538)
T ss_pred hCCCCcEEEECCCCCCHHHHH
Confidence 456778999999999997655
No 474
>PRK13947 shikimate kinase; Provisional
Probab=40.50 E-value=16 Score=25.84 Aligned_cols=16 Identities=31% Similarity=0.372 Sum_probs=13.5
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
.|+..|..|||||..-
T Consensus 3 ~I~l~G~~GsGKst~a 18 (171)
T PRK13947 3 NIVLIGFMGTGKTTVG 18 (171)
T ss_pred eEEEEcCCCCCHHHHH
Confidence 4788899999998765
No 475
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=40.46 E-value=14 Score=26.84 Aligned_cols=15 Identities=33% Similarity=0.403 Sum_probs=12.4
Q ss_pred EEeeccCCCCCceee
Q psy12524 48 IFAYGQTGSGKSYTM 62 (151)
Q Consensus 48 v~~yG~~~sGKt~t~ 62 (151)
|..-|.+|||||...
T Consensus 2 i~i~G~sgsGKttla 16 (179)
T cd02028 2 VGIAGPSGSGKTTFA 16 (179)
T ss_pred EEEECCCCCCHHHHH
Confidence 456799999999876
No 476
>KOG0328|consensus
Probab=40.38 E-value=32 Score=27.79 Aligned_cols=25 Identities=28% Similarity=0.527 Sum_probs=19.4
Q ss_pred HHHHhhcCCCeeEEeeccCCCCCceee
Q psy12524 36 ILDNAFQGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 36 lv~~~~~G~~~~v~~yG~~~sGKt~t~ 62 (151)
-|..++.|.++ +|-.++|+|||.+.
T Consensus 57 Ai~~IlkGrdV--iaQaqSGTGKTa~~ 81 (400)
T KOG0328|consen 57 AIPQILKGRDV--IAQAQSGTGKTATF 81 (400)
T ss_pred hhhhhhcccce--EEEecCCCCceEEE
Confidence 34457778875 77779999999887
No 477
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=40.32 E-value=24 Score=26.68 Aligned_cols=17 Identities=24% Similarity=0.481 Sum_probs=12.6
Q ss_pred eeEEeeccCCCCCceee
Q psy12524 46 ACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 46 ~~v~~yG~~~sGKt~t~ 62 (151)
-.++.+|..|+|||...
T Consensus 23 h~lLl~GppGtGKTmlA 39 (206)
T PF01078_consen 23 HHLLLIGPPGTGKTMLA 39 (206)
T ss_dssp --EEEES-CCCTHHHHH
T ss_pred CCeEEECCCCCCHHHHH
Confidence 36899999999999766
No 478
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=40.32 E-value=10 Score=26.01 Aligned_cols=16 Identities=31% Similarity=0.625 Sum_probs=13.4
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
.|+..|..|+|||..+
T Consensus 2 ki~~vG~~~vGKTsli 17 (168)
T cd04119 2 KVISMGNSGVGKSCII 17 (168)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3678899999999776
No 479
>PF05872 DUF853: Bacterial protein of unknown function (DUF853); InterPro: IPR008571 Members of this family have a P-loop containing nucleotide triphosphate hydrolases fold. This family is restricted to bacterial proteins, none of which have currently been characterised.
Probab=40.32 E-value=13 Score=31.75 Aligned_cols=14 Identities=43% Similarity=0.750 Sum_probs=12.5
Q ss_pred EeeccCCCCCceee
Q psy12524 49 FAYGQTGSGKSYTM 62 (151)
Q Consensus 49 ~~yG~~~sGKt~t~ 62 (151)
+.-|.||||||-|+
T Consensus 23 LIaGATGTGKTvTL 36 (502)
T PF05872_consen 23 LIAGATGTGKTVTL 36 (502)
T ss_pred eeeccCCCCceehH
Confidence 45699999999999
No 480
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=40.25 E-value=23 Score=33.61 Aligned_cols=27 Identities=37% Similarity=0.711 Sum_probs=20.2
Q ss_pred HHHHHHhhcCCCeeEEeeccCCCCCceee
Q psy12524 34 RDILDNAFQGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 34 ~~lv~~~~~G~~~~v~~yG~~~sGKt~t~ 62 (151)
...|..++.|.++.+ .-+||+|||..-
T Consensus 466 ~eaI~aiL~GrDVLV--imPTGSGKSLcY 492 (1195)
T PLN03137 466 REIINATMSGYDVFV--LMPTGGGKSLTY 492 (1195)
T ss_pred HHHHHHHHcCCCEEE--EcCCCccHHHHH
Confidence 356677889998644 448999999763
No 481
>PRK10689 transcription-repair coupling factor; Provisional
Probab=40.19 E-value=31 Score=32.77 Aligned_cols=37 Identities=19% Similarity=0.214 Sum_probs=22.5
Q ss_pred CCCCHHHHHHHHhHHHHHHhhcCCCeeEEeeccCCCCCcee
Q psy12524 21 NFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYT 61 (151)
Q Consensus 21 ~~~~q~~vy~~~~~~lv~~~~~G~~~~v~~yG~~~sGKt~t 61 (151)
+...|.+....+. .+.-.+....+++.|.+|+|||..
T Consensus 601 ~T~~Q~~aI~~il----~d~~~~~~~d~Ll~a~TGsGKT~v 637 (1147)
T PRK10689 601 TTPDQAQAINAVL----SDMCQPLAMDRLVCGDVGFGKTEV 637 (1147)
T ss_pred CCHHHHHHHHHHH----HHhhcCCCCCEEEEcCCCcCHHHH
Confidence 3444444443333 333334455689999999999964
No 482
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=40.19 E-value=12 Score=22.92 Aligned_cols=15 Identities=33% Similarity=0.496 Sum_probs=11.8
Q ss_pred EEeeccCCCCCceee
Q psy12524 48 IFAYGQTGSGKSYTM 62 (151)
Q Consensus 48 v~~yG~~~sGKt~t~ 62 (151)
++.+|..|+|||.+.
T Consensus 2 ~~~~g~~G~Gktt~~ 16 (99)
T cd01983 2 IVVTGKGGVGKTTLA 16 (99)
T ss_pred EEEECCCCCCHHHHH
Confidence 355677799999887
No 483
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=40.13 E-value=20 Score=28.85 Aligned_cols=20 Identities=20% Similarity=0.424 Sum_probs=17.0
Q ss_pred CCCeeEEeeccCCCCCceee
Q psy12524 43 GYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 43 G~~~~v~~yG~~~sGKt~t~ 62 (151)
..+..|+..|.+||||+...
T Consensus 20 ~~~~pVLI~GE~GtGK~~lA 39 (329)
T TIGR02974 20 PLDRPVLIIGERGTGKELIA 39 (329)
T ss_pred CCCCCEEEECCCCChHHHHH
Confidence 56777999999999998765
No 484
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=40.08 E-value=12 Score=31.60 Aligned_cols=17 Identities=35% Similarity=0.475 Sum_probs=15.0
Q ss_pred eeEEeeccCCCCCceee
Q psy12524 46 ACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 46 ~~v~~yG~~~sGKt~t~ 62 (151)
..++.+|++|+|||...
T Consensus 48 ~~ILLiGppG~GKT~lA 64 (441)
T TIGR00390 48 KNILMIGPTGVGKTEIA 64 (441)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 56899999999998876
No 485
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=40.04 E-value=12 Score=27.46 Aligned_cols=16 Identities=38% Similarity=0.517 Sum_probs=13.2
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
.+...|.+|+|||..+
T Consensus 26 ~~~i~G~nGsGKSTLl 41 (206)
T TIGR03608 26 MYAIIGESGSGKSTLL 41 (206)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4567799999999876
No 486
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=40.03 E-value=15 Score=29.25 Aligned_cols=15 Identities=47% Similarity=0.594 Sum_probs=12.9
Q ss_pred EEeeccCCCCCceee
Q psy12524 48 IFAYGQTGSGKSYTM 62 (151)
Q Consensus 48 v~~yG~~~sGKt~t~ 62 (151)
++..|+||||||...
T Consensus 2 i~i~G~t~~GKs~la 16 (287)
T TIGR00174 2 IFIMGPTAVGKSQLA 16 (287)
T ss_pred EEEECCCCCCHHHHH
Confidence 578899999999765
No 487
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=39.99 E-value=10 Score=27.71 Aligned_cols=17 Identities=29% Similarity=0.432 Sum_probs=15.0
Q ss_pred eeEEeeccCCCCCceee
Q psy12524 46 ACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 46 ~~v~~yG~~~sGKt~t~ 62 (151)
..++.+|..|+|||..+
T Consensus 6 ~kivv~G~~g~GKTtl~ 22 (219)
T COG1100 6 FKIVVLGDGGVGKTTLL 22 (219)
T ss_pred EEEEEEcCCCccHHHHH
Confidence 46889999999999877
No 488
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=39.95 E-value=13 Score=27.35 Aligned_cols=17 Identities=24% Similarity=0.292 Sum_probs=14.7
Q ss_pred eeEEeeccCCCCCceee
Q psy12524 46 ACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 46 ~~v~~yG~~~sGKt~t~ 62 (151)
-.+...|++|+|||..+
T Consensus 30 ~~~~l~G~Ng~GKStll 46 (202)
T cd03243 30 RLLLITGPNMGGKSTYL 46 (202)
T ss_pred eEEEEECCCCCccHHHH
Confidence 45678899999999988
No 489
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=39.88 E-value=12 Score=27.54 Aligned_cols=16 Identities=31% Similarity=0.443 Sum_probs=13.2
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
.+...|.+|||||..+
T Consensus 28 ~~~i~G~nGsGKSTLl 43 (205)
T cd03226 28 IIALTGKNGAGKTTLA 43 (205)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4567799999999876
No 490
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=39.86 E-value=48 Score=26.30 Aligned_cols=34 Identities=26% Similarity=0.553 Sum_probs=23.3
Q ss_pred eEEeeccCCCCCceee-----ccCC----CCCCcHHHHHHHHH
Q psy12524 47 CIFAYGQTGSGKSYTM-----MGSQ----DNKGIIPRLCDSLF 80 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~-----~G~~----~~~Gli~~~~~~lf 80 (151)
.|+.-|.+|+|||--+ .|.- =.+.|+|..++-+.
T Consensus 3 lvIVTGlSGAGKsvAl~~lEDlGyycvDNLPp~Llp~~~~~~~ 45 (286)
T COG1660 3 LVIVTGLSGAGKSVALRVLEDLGYYCVDNLPPQLLPKLADLML 45 (286)
T ss_pred EEEEecCCCCcHHHHHHHHHhcCeeeecCCCHHHHHHHHHHHh
Confidence 3678899999999877 3422 24677777776444
No 491
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=39.79 E-value=10 Score=26.26 Aligned_cols=16 Identities=19% Similarity=0.436 Sum_probs=13.2
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
+|...|..|+|||..+
T Consensus 1 ~i~~vG~~~~GKstLi 16 (167)
T cd04160 1 SVLILGLDNAGKTTFL 16 (167)
T ss_pred CEEEEecCCCCHHHHH
Confidence 3567899999999876
No 492
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=39.77 E-value=33 Score=28.28 Aligned_cols=21 Identities=24% Similarity=0.233 Sum_probs=15.5
Q ss_pred cCCC-eeEEeeccCCCCCceee
Q psy12524 42 QGYN-ACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 42 ~G~~-~~v~~yG~~~sGKt~t~ 62 (151)
.|.- .+++-+|+.|+|||...
T Consensus 34 ~~~~~ha~lf~Gp~G~GKtt~A 55 (397)
T PRK14955 34 MGRVGHGYIFSGLRGVGKTTAA 55 (397)
T ss_pred hCCcceeEEEECCCCCCHHHHH
Confidence 4443 35888999999999554
No 493
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=39.73 E-value=11 Score=28.66 Aligned_cols=16 Identities=44% Similarity=0.534 Sum_probs=13.6
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
....+|.+|||||-.+
T Consensus 24 ~~~i~G~NGsGKStll 39 (247)
T cd03275 24 FTCIIGPNGSGKSNLM 39 (247)
T ss_pred eEEEECCCCCCHHHHH
Confidence 4568899999999886
No 494
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=39.73 E-value=12 Score=27.85 Aligned_cols=17 Identities=29% Similarity=0.442 Sum_probs=13.6
Q ss_pred eeEEeeccCCCCCceee
Q psy12524 46 ACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 46 ~~v~~yG~~~sGKt~t~ 62 (151)
..+...|.+|||||..+
T Consensus 27 e~~~i~G~nGsGKSTLl 43 (220)
T cd03265 27 EIFGLLGPNGAGKTTTI 43 (220)
T ss_pred CEEEEECCCCCCHHHHH
Confidence 34567799999999777
No 495
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=39.60 E-value=13 Score=30.42 Aligned_cols=40 Identities=23% Similarity=0.414 Sum_probs=26.0
Q ss_pred CCCCHHHHHHHHhHHHHHHhh-cCCCeeEEeeccCCCCCceee
Q psy12524 21 NFASQEKVFDALGRDILDNAF-QGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 21 ~~~~q~~vy~~~~~~lv~~~~-~G~~~~v~~yG~~~sGKt~t~ 62 (151)
.+.++.+-=.+....+|+.++ .|+. ++.||.+|.|||..+
T Consensus 66 ~~~~~~eWdrs~~P~lId~~fr~g~~--~~~~gdsg~GKttll 106 (402)
T COG3598 66 EAMRLSEWDRSNSPQLIDEFFRKGYV--SILYGDSGVGKTTLL 106 (402)
T ss_pred hhcChhhcCcccChhhhhHHhhcCee--EEEecCCcccHhHHH
Confidence 333443332344466777765 4654 478999999999887
No 496
>PLN02165 adenylate isopentenyltransferase
Probab=39.59 E-value=15 Score=29.86 Aligned_cols=16 Identities=44% Similarity=0.571 Sum_probs=13.7
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
.++..|+||||||...
T Consensus 45 iivIiGPTGSGKStLA 60 (334)
T PLN02165 45 VVVIMGATGSGKSRLS 60 (334)
T ss_pred EEEEECCCCCcHHHHH
Confidence 5777899999999766
No 497
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=39.39 E-value=12 Score=27.11 Aligned_cols=16 Identities=31% Similarity=0.532 Sum_probs=12.9
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
.+...|.+|||||..+
T Consensus 20 ~~~i~G~nGsGKSTLl 35 (190)
T TIGR01166 20 VLALLGANGAGKSTLL 35 (190)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3456799999999876
No 498
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=39.39 E-value=12 Score=27.98 Aligned_cols=17 Identities=29% Similarity=0.466 Sum_probs=13.7
Q ss_pred eeEEeeccCCCCCceee
Q psy12524 46 ACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 46 ~~v~~yG~~~sGKt~t~ 62 (151)
..+...|.+|||||..+
T Consensus 27 e~~~l~G~nGsGKSTLl 43 (232)
T cd03218 27 EIVGLLGPNGAGKTTTF 43 (232)
T ss_pred cEEEEECCCCCCHHHHH
Confidence 34567799999999876
No 499
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=39.28 E-value=11 Score=26.03 Aligned_cols=15 Identities=20% Similarity=0.251 Sum_probs=12.9
Q ss_pred EEeeccCCCCCceee
Q psy12524 48 IFAYGQTGSGKSYTM 62 (151)
Q Consensus 48 v~~yG~~~sGKt~t~ 62 (151)
+...|.+|+|||..+
T Consensus 3 i~vvG~~~~GKtsl~ 17 (164)
T cd04101 3 CAVVGDPAVGKTAFV 17 (164)
T ss_pred EEEECCCCCCHHHHH
Confidence 567899999999876
No 500
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=39.17 E-value=12 Score=27.77 Aligned_cols=16 Identities=31% Similarity=0.499 Sum_probs=13.1
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
.+...|.+|||||..+
T Consensus 32 ~~~i~G~nGsGKSTLl 47 (220)
T cd03293 32 FVALVGPSGCGKSTLL 47 (220)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4566799999999877
Done!