Query psy12524
Match_columns 151
No_of_seqs 131 out of 1087
Neff 8.2
Searched_HMMs 29240
Date Fri Aug 16 21:33:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12524.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12524hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gbj_A KIF13B protein; kinesin 100.0 2.3E-44 7.9E-49 288.9 13.1 149 2-150 49-198 (354)
2 2owm_A Nckin3-434, related to 100.0 2.5E-43 8.4E-48 289.7 16.7 148 3-150 95-247 (443)
3 1t5c_A CENP-E protein, centrom 100.0 9.6E-43 3.3E-47 279.0 14.1 140 2-150 42-181 (349)
4 4a14_A Kinesin, kinesin-like p 100.0 3.7E-42 1.3E-46 275.3 16.0 140 2-150 48-193 (344)
5 2vvg_A Kinesin-2; motor protei 100.0 4.2E-42 1.4E-46 275.3 14.0 138 2-150 54-191 (350)
6 2zfi_A Kinesin-like protein KI 100.0 4.6E-42 1.6E-46 276.6 14.1 148 2-150 46-196 (366)
7 3bfn_A Kinesin-like protein KI 100.0 4.8E-42 1.6E-46 277.7 13.6 139 3-150 64-204 (388)
8 1bg2_A Kinesin; motor protein, 100.0 1.3E-41 4.4E-46 270.3 15.4 138 3-150 43-183 (325)
9 3b6u_A Kinesin-like protein KI 100.0 1.2E-41 4E-46 274.4 15.0 139 2-150 66-207 (372)
10 1goj_A Kinesin, kinesin heavy 100.0 2E-41 6.7E-46 271.9 15.1 139 2-150 45-187 (355)
11 3lre_A Kinesin-like protein KI 100.0 2.2E-41 7.4E-46 271.8 13.8 138 2-150 70-207 (355)
12 3cob_A Kinesin heavy chain-lik 100.0 2.5E-41 8.4E-46 272.4 13.6 140 2-150 45-185 (369)
13 2y65_A Kinesin, kinesin heavy 100.0 6.5E-41 2.2E-45 269.7 15.7 138 3-150 50-190 (365)
14 2h58_A Kinesin-like protein KI 100.0 2.8E-41 9.5E-46 268.8 12.7 139 3-150 47-186 (330)
15 3u06_A Protein claret segregat 100.0 5.8E-41 2E-45 273.5 12.8 140 3-150 105-244 (412)
16 2wbe_C Bipolar kinesin KRP-130 100.0 1.6E-40 5.4E-45 268.2 14.7 138 2-150 65-215 (373)
17 2heh_A KIF2C protein; kinesin, 100.0 5E-41 1.7E-45 271.6 11.5 138 3-150 100-243 (387)
18 1x88_A Kinesin-like protein KI 100.0 1.2E-40 4E-45 267.9 12.8 138 3-150 54-205 (359)
19 2rep_A Kinesin-like protein KI 100.0 1.8E-40 6.2E-45 267.9 13.8 140 3-150 82-230 (376)
20 1v8k_A Kinesin-like protein KI 100.0 8.8E-41 3E-45 271.8 10.9 138 3-150 120-263 (410)
21 1f9v_A Kinesin-like protein KA 100.0 4.3E-40 1.5E-44 263.5 12.9 139 2-150 50-196 (347)
22 3t0q_A AGR253WP; kinesin, alph 100.0 8.2E-40 2.8E-44 262.1 13.4 138 3-150 52-199 (349)
23 2nr8_A Kinesin-like protein KI 100.0 1.1E-39 3.9E-44 261.9 13.8 137 3-150 70-213 (358)
24 3nwn_A Kinesin-like protein KI 100.0 2.1E-39 7.3E-44 260.4 13.8 138 2-150 70-214 (359)
25 4etp_A Kinesin-like protein KA 100.0 7.5E-39 2.6E-43 260.7 14.9 138 3-150 107-252 (403)
26 1ry6_A Internal kinesin; kines 100.0 4.9E-39 1.7E-43 258.4 11.5 137 3-150 49-191 (360)
27 3dc4_A Kinesin-like protein NO 100.0 2.9E-37 9.8E-42 246.8 11.1 133 3-150 60-199 (344)
28 4h1g_A Maltose binding protein 100.0 8.1E-37 2.8E-41 263.9 12.8 139 2-150 428-568 (715)
29 2o0a_A S.cerevisiae chromosome 99.9 1.1E-25 3.8E-30 173.5 8.2 123 4-150 57-185 (298)
30 3ec2_A DNA replication protein 95.7 0.0017 5.7E-08 45.9 -0.1 40 22-62 16-55 (180)
31 4etp_B Spindle POLE BODY-assoc 93.5 0.5 1.7E-05 36.9 8.8 90 2-114 90-183 (333)
32 1jbk_A CLPB protein; beta barr 93.4 0.044 1.5E-06 37.7 2.6 29 34-62 32-60 (195)
33 2w58_A DNAI, primosome compone 93.4 0.045 1.5E-06 38.9 2.7 38 24-62 33-71 (202)
34 2qgz_A Helicase loader, putati 93.3 0.02 6.8E-07 44.3 0.7 38 24-62 132-169 (308)
35 2p65_A Hypothetical protein PF 92.8 0.05 1.7E-06 37.5 2.1 29 34-62 32-60 (187)
36 3te6_A Regulatory protein SIR3 92.1 0.065 2.2E-06 41.9 2.2 24 39-62 39-62 (318)
37 3uk6_A RUVB-like 2; hexameric 91.0 0.14 4.9E-06 39.7 3.1 38 24-62 48-87 (368)
38 2bjv_A PSP operon transcriptio 90.4 0.11 3.8E-06 38.6 1.9 18 45-62 29-46 (265)
39 3t15_A Ribulose bisphosphate c 90.4 0.1 3.6E-06 39.8 1.7 58 26-83 13-91 (293)
40 1g8p_A Magnesium-chelatase 38 90.0 0.085 2.9E-06 40.5 1.0 23 40-62 40-62 (350)
41 2chg_A Replication factor C sm 89.5 0.19 6.4E-06 35.3 2.4 21 42-62 35-55 (226)
42 3h4m_A Proteasome-activating n 89.3 0.14 4.8E-06 38.3 1.7 41 44-84 50-107 (285)
43 3bos_A Putative DNA replicatio 89.2 0.22 7.5E-06 35.7 2.6 20 43-62 50-69 (242)
44 1l8q_A Chromosomal replication 88.8 0.13 4.4E-06 39.4 1.2 18 45-62 37-54 (324)
45 1d2n_A N-ethylmaleimide-sensit 88.7 0.39 1.3E-05 35.7 3.8 21 42-62 61-81 (272)
46 2c9o_A RUVB-like 1; hexameric 88.4 0.37 1.3E-05 39.0 3.8 38 24-62 41-80 (456)
47 4b4t_M 26S protease regulatory 87.7 0.35 1.2E-05 39.4 3.1 61 26-86 191-273 (434)
48 2r62_A Cell division protease 87.7 0.18 6E-06 37.4 1.3 18 45-62 44-61 (268)
49 2kjq_A DNAA-related protein; s 86.1 0.23 7.9E-06 34.1 1.1 18 45-62 36-53 (149)
50 1sxj_C Activator 1 40 kDa subu 85.3 0.44 1.5E-05 36.7 2.5 25 38-62 39-63 (340)
51 3syl_A Protein CBBX; photosynt 85.3 0.47 1.6E-05 35.7 2.5 19 44-62 66-84 (309)
52 1fnn_A CDC6P, cell division co 84.4 1 3.5E-05 34.7 4.2 39 23-62 20-61 (389)
53 3cf0_A Transitional endoplasmi 84.1 0.22 7.6E-06 38.0 0.3 18 45-62 49-66 (301)
54 4b4t_K 26S protease regulatory 84.1 0.61 2.1E-05 37.9 2.9 42 45-86 206-264 (428)
55 3n70_A Transport activator; si 83.8 0.5 1.7E-05 31.8 1.9 20 43-62 22-41 (145)
56 2qby_B CDC6 homolog 3, cell di 83.6 0.85 2.9E-05 35.2 3.4 38 24-62 24-62 (384)
57 2v1u_A Cell division control p 83.4 0.42 1.4E-05 36.8 1.6 39 23-62 22-61 (387)
58 2qz4_A Paraplegin; AAA+, SPG7, 83.1 1.1 3.6E-05 32.7 3.7 41 44-84 38-95 (262)
59 1p9r_A General secretion pathw 83.1 0.57 1.9E-05 37.8 2.3 27 36-62 158-184 (418)
60 1iqp_A RFCS; clamp loader, ext 82.7 0.66 2.3E-05 34.9 2.4 36 23-62 28-63 (327)
61 3co5_A Putative two-component 82.5 0.65 2.2E-05 31.2 2.1 28 35-63 18-45 (143)
62 3b9p_A CG5977-PA, isoform A; A 82.3 0.24 8.2E-06 37.3 -0.2 40 45-84 54-110 (297)
63 1njg_A DNA polymerase III subu 82.3 0.7 2.4E-05 32.6 2.3 17 46-62 46-62 (250)
64 4b4t_J 26S protease regulatory 82.2 0.84 2.9E-05 36.8 2.9 61 26-86 158-240 (405)
65 1ofh_A ATP-dependent HSL prote 81.9 0.68 2.3E-05 34.6 2.2 18 45-62 50-67 (310)
66 3pxg_A Negative regulator of g 81.9 0.8 2.7E-05 37.3 2.7 29 36-64 192-220 (468)
67 1sxj_D Activator 1 41 kDa subu 81.8 0.53 1.8E-05 36.0 1.6 27 36-62 49-75 (353)
68 3d8b_A Fidgetin-like protein 1 81.6 0.24 8.2E-06 38.8 -0.5 20 43-62 115-134 (357)
69 3jvv_A Twitching mobility prot 81.4 0.63 2.1E-05 36.7 1.9 27 36-62 114-140 (356)
70 1ixz_A ATP-dependent metallopr 81.2 0.62 2.1E-05 34.2 1.7 16 47-62 51-66 (254)
71 3pvs_A Replication-associated 81.0 0.64 2.2E-05 37.8 1.9 40 22-62 28-67 (447)
72 1u0j_A DNA replication protein 80.8 1 3.5E-05 34.3 2.8 28 35-62 91-121 (267)
73 1qde_A EIF4A, translation init 80.8 0.98 3.3E-05 32.2 2.6 24 36-61 44-67 (224)
74 1vec_A ATP-dependent RNA helic 80.6 1.2 4.3E-05 31.1 3.1 25 36-62 33-57 (206)
75 1tue_A Replication protein E1; 80.3 0.46 1.6E-05 35.0 0.7 26 37-62 48-75 (212)
76 3pfi_A Holliday junction ATP-d 80.2 0.96 3.3E-05 34.5 2.6 39 23-62 32-72 (338)
77 4fcw_A Chaperone protein CLPB; 80.1 0.68 2.3E-05 34.8 1.7 17 46-62 48-64 (311)
78 2gxq_A Heat resistant RNA depe 79.9 1.1 3.7E-05 31.4 2.6 24 36-61 31-54 (207)
79 2chq_A Replication factor C sm 79.8 0.58 2E-05 35.1 1.2 21 42-62 35-55 (319)
80 3vfd_A Spastin; ATPase, microt 79.4 0.77 2.6E-05 36.2 1.8 18 45-62 148-165 (389)
81 3dkp_A Probable ATP-dependent 78.7 1.2 4.1E-05 32.3 2.6 24 36-61 59-82 (245)
82 1lv7_A FTSH; alpha/beta domain 78.4 0.51 1.7E-05 34.7 0.4 18 45-62 45-62 (257)
83 4b4t_L 26S protease subunit RP 78.2 1.3 4.3E-05 36.1 2.8 60 27-86 192-273 (437)
84 4b4t_I 26S protease regulatory 78.1 1.3 4.5E-05 36.1 2.8 42 45-86 216-274 (437)
85 1gvn_B Zeta; postsegregational 78.0 3 0.0001 31.5 4.7 32 31-62 14-50 (287)
86 4b4t_H 26S protease regulatory 78.0 1.3 4.4E-05 36.4 2.7 42 45-86 243-301 (467)
87 3fmo_B ATP-dependent RNA helic 77.6 1.3 4.4E-05 33.7 2.5 27 36-62 122-148 (300)
88 1hqc_A RUVB; extended AAA-ATPa 77.4 1.7 5.7E-05 32.8 3.1 38 24-62 16-55 (324)
89 3eie_A Vacuolar protein sortin 77.4 0.57 2E-05 35.9 0.5 40 46-85 52-108 (322)
90 1sxj_B Activator 1 37 kDa subu 77.4 1 3.5E-05 33.7 1.9 22 41-62 38-59 (323)
91 3ly5_A ATP-dependent RNA helic 77.3 0.93 3.2E-05 33.6 1.6 25 35-61 83-107 (262)
92 2eyu_A Twitching motility prot 77.3 1 3.4E-05 33.8 1.8 20 43-62 23-42 (261)
93 2qby_A CDC6 homolog 1, cell di 77.1 0.87 3E-05 34.9 1.5 20 43-62 43-62 (386)
94 3bor_A Human initiation factor 76.7 0.87 3E-05 33.1 1.3 25 36-62 60-84 (237)
95 1iy2_A ATP-dependent metallopr 76.7 0.56 1.9E-05 35.1 0.2 16 47-62 75-90 (278)
96 3fmp_B ATP-dependent RNA helic 76.6 1.5 5.1E-05 35.2 2.8 26 36-61 122-147 (479)
97 2pl3_A Probable ATP-dependent 76.3 1.6 5.3E-05 31.5 2.6 24 36-61 55-78 (236)
98 3llm_A ATP-dependent RNA helic 76.2 1.3 4.4E-05 32.2 2.1 24 37-62 70-93 (235)
99 1xwi_A SKD1 protein; VPS4B, AA 75.7 0.67 2.3E-05 35.7 0.5 39 46-84 46-102 (322)
100 3iuy_A Probable ATP-dependent 75.7 1.6 5.6E-05 31.2 2.5 25 36-62 50-74 (228)
101 2r44_A Uncharacterized protein 75.6 0.8 2.7E-05 35.0 0.9 16 47-62 48-63 (331)
102 2z4s_A Chromosomal replication 75.6 0.62 2.1E-05 37.6 0.3 18 45-62 130-147 (440)
103 1w5s_A Origin recognition comp 75.2 1.5 5.1E-05 34.1 2.4 25 38-62 40-69 (412)
104 3upu_A ATP-dependent DNA helic 75.1 1.7 5.8E-05 35.1 2.7 35 23-62 28-62 (459)
105 1wrb_A DJVLGB; RNA helicase, D 74.8 1.8 6.2E-05 31.5 2.6 25 36-62 53-77 (253)
106 1t6n_A Probable ATP-dependent 74.7 1.8 6.3E-05 30.7 2.6 25 36-62 44-68 (220)
107 3eiq_A Eukaryotic initiation f 74.6 2 6.9E-05 33.3 3.0 26 35-62 69-94 (414)
108 2p5t_B PEZT; postsegregational 74.4 1.9 6.4E-05 31.8 2.6 18 45-62 32-49 (253)
109 3fht_A ATP-dependent RNA helic 73.8 1.9 6.4E-05 33.4 2.6 27 36-62 55-81 (412)
110 3pxi_A Negative regulator of g 73.4 2.9 0.0001 35.9 3.9 29 35-63 191-219 (758)
111 1jr3_A DNA polymerase III subu 72.7 1.9 6.4E-05 33.1 2.3 36 23-62 19-55 (373)
112 2x8a_A Nuclear valosin-contain 72.7 0.8 2.8E-05 34.5 0.2 37 48-84 47-100 (274)
113 1n0w_A DNA repair protein RAD5 72.6 1.5 5.2E-05 31.4 1.7 28 35-62 11-41 (243)
114 1r6b_X CLPA protein; AAA+, N-t 72.6 1.7 5.8E-05 37.3 2.2 29 35-63 197-225 (758)
115 1sxj_E Activator 1 40 kDa subu 72.5 1.1 3.7E-05 34.3 0.9 20 43-62 34-53 (354)
116 3pey_A ATP-dependent RNA helic 72.5 2.1 7.2E-05 32.7 2.6 27 36-62 35-61 (395)
117 3ber_A Probable ATP-dependent 72.4 2.2 7.6E-05 31.3 2.6 25 36-62 73-97 (249)
118 3b6e_A Interferon-induced heli 72.3 0.79 2.7E-05 32.2 0.1 24 37-62 42-65 (216)
119 1in4_A RUVB, holliday junction 72.2 0.85 2.9E-05 35.2 0.3 17 46-62 52-68 (334)
120 3c8u_A Fructokinase; YP_612366 72.2 2.5 8.4E-05 30.0 2.7 29 34-62 9-39 (208)
121 1rz3_A Hypothetical protein rb 72.0 2.6 8.8E-05 29.8 2.8 29 34-62 8-39 (201)
122 2oxc_A Probable ATP-dependent 71.6 2.4 8.3E-05 30.4 2.6 24 36-61 54-77 (230)
123 1ojl_A Transcriptional regulat 71.5 2.2 7.4E-05 32.5 2.4 20 43-62 23-42 (304)
124 3fe2_A Probable ATP-dependent 71.3 2.1 7E-05 31.1 2.2 25 36-62 59-83 (242)
125 4b3f_X DNA-binding protein smu 71.2 1.4 4.7E-05 37.3 1.3 24 38-62 199-222 (646)
126 1lkx_A Myosin IE heavy chain; 70.7 2.9 9.9E-05 36.1 3.2 21 42-62 91-111 (697)
127 4gp7_A Metallophosphoesterase; 70.3 1.1 3.7E-05 31.1 0.4 18 46-63 10-27 (171)
128 2qp9_X Vacuolar protein sortin 70.0 0.98 3.4E-05 35.3 0.2 17 46-62 85-101 (355)
129 2ewv_A Twitching motility prot 70.0 1.3 4.6E-05 34.9 0.9 28 35-62 126-153 (372)
130 3i5x_A ATP-dependent RNA helic 69.1 3.2 0.00011 34.0 3.1 26 36-61 102-127 (563)
131 1w9i_A Myosin II heavy chain; 69.0 3.3 0.00011 36.2 3.2 21 42-62 169-189 (770)
132 1um8_A ATP-dependent CLP prote 69.0 1.1 3.8E-05 34.9 0.3 18 45-62 72-89 (376)
133 2j0s_A ATP-dependent RNA helic 68.9 2.8 9.7E-05 32.5 2.6 25 36-62 67-91 (410)
134 2oap_1 GSPE-2, type II secreti 68.6 2.5 8.6E-05 34.9 2.3 19 42-62 259-277 (511)
135 2v26_A Myosin VI; calmodulin-b 68.4 3.4 0.00012 36.1 3.2 21 42-62 137-157 (784)
136 1q0u_A Bstdead; DEAD protein, 68.2 1.7 5.9E-05 30.9 1.2 23 37-61 35-57 (219)
137 1qvr_A CLPB protein; coiled co 68.1 1.7 5.9E-05 38.0 1.3 30 34-63 180-209 (854)
138 3b85_A Phosphate starvation-in 68.0 2.5 8.5E-05 30.5 2.0 25 36-62 15-39 (208)
139 3hu3_A Transitional endoplasmi 67.9 2.3 7.8E-05 34.9 2.0 20 43-62 236-255 (489)
140 3h1t_A Type I site-specific re 67.7 2.7 9.3E-05 34.7 2.4 28 34-62 188-215 (590)
141 2w0m_A SSO2452; RECA, SSPF, un 67.2 2.1 7.3E-05 30.2 1.5 27 36-62 11-40 (235)
142 2fz4_A DNA repair protein RAD2 66.9 2.3 7.8E-05 31.1 1.6 24 38-63 103-126 (237)
143 4db1_A Myosin-7; S1DC, cardiac 66.7 3.9 0.00013 35.8 3.2 21 42-62 168-188 (783)
144 1w7j_A Myosin VA; motor protei 66.7 3.9 0.00013 35.8 3.2 21 42-62 153-173 (795)
145 1s2m_A Putative ATP-dependent 66.7 3 0.0001 32.2 2.4 25 36-62 51-75 (400)
146 2zan_A Vacuolar protein sortin 66.6 1.4 4.8E-05 35.5 0.5 17 46-62 168-184 (444)
147 1kk8_A Myosin heavy chain, str 66.3 3.6 0.00012 36.3 2.9 21 42-62 166-186 (837)
148 3hws_A ATP-dependent CLP prote 66.2 1.5 5.2E-05 34.0 0.5 18 45-62 51-68 (363)
149 1g8x_A Myosin II heavy chain f 65.6 3.9 0.00013 36.8 3.1 21 42-62 169-189 (1010)
150 1i84_S Smooth muscle myosin he 65.5 4.4 0.00015 36.9 3.5 21 42-62 166-186 (1184)
151 4anj_A Unconventional myosin-V 65.1 4.2 0.00014 36.7 3.2 21 42-62 141-161 (1052)
152 2ycu_A Non muscle myosin 2C, a 65.1 4.2 0.00014 36.5 3.2 21 42-62 143-163 (995)
153 2z0m_A 337AA long hypothetical 64.9 3.9 0.00013 30.5 2.6 24 37-62 25-48 (337)
154 2cvh_A DNA repair and recombin 64.8 2.8 9.7E-05 29.4 1.7 28 35-62 7-37 (220)
155 3lfu_A DNA helicase II; SF1 he 64.6 1.9 6.7E-05 35.9 0.9 24 40-63 17-40 (647)
156 4a74_A DNA repair and recombin 64.4 3.1 0.00011 29.4 1.9 28 35-62 12-42 (231)
157 3nbx_X ATPase RAVA; AAA+ ATPas 64.2 3.5 0.00012 34.0 2.4 17 46-62 42-58 (500)
158 1sxj_A Activator 1 95 kDa subu 63.9 3.9 0.00013 33.5 2.6 18 45-62 77-94 (516)
159 3fho_A ATP-dependent RNA helic 63.8 4 0.00014 33.3 2.6 25 37-61 150-174 (508)
160 1e9r_A Conjugal transfer prote 63.6 1.4 4.6E-05 35.2 -0.2 18 45-62 53-70 (437)
161 1moz_A ARL1, ADP-ribosylation 63.4 2.7 9.4E-05 28.4 1.4 27 36-62 8-35 (183)
162 2dfs_A Myosin-5A; myosin-V, in 63.2 4.8 0.00016 36.5 3.2 21 42-62 153-173 (1080)
163 3lw7_A Adenylate kinase relate 63.1 2.6 8.7E-05 28.2 1.2 16 47-62 3-18 (179)
164 3oiy_A Reverse gyrase helicase 63.0 3.4 0.00012 32.3 2.0 24 36-61 29-52 (414)
165 2qnr_A Septin-2, protein NEDD5 62.6 1.8 6.2E-05 33.0 0.4 24 39-62 12-35 (301)
166 3a00_A Guanylate kinase, GMP k 62.5 1.8 6.3E-05 30.1 0.4 15 48-62 4-18 (186)
167 1qhx_A CPT, protein (chloramph 62.3 2.8 9.7E-05 28.5 1.3 17 46-62 4-20 (178)
168 3tr0_A Guanylate kinase, GMP k 62.1 1.9 6.6E-05 30.1 0.4 16 47-62 9-24 (205)
169 2dr3_A UPF0273 protein PH0284; 62.0 2.8 9.7E-05 29.9 1.3 26 37-62 12-40 (247)
170 2qen_A Walker-type ATPase; unk 62.0 3.9 0.00013 30.7 2.1 17 46-62 32-48 (350)
171 2i4i_A ATP-dependent RNA helic 62.0 4.5 0.00015 31.3 2.5 24 37-62 46-69 (417)
172 1zp6_A Hypothetical protein AT 61.7 2.1 7.3E-05 29.5 0.6 17 46-62 10-26 (191)
173 3u61_B DNA polymerase accessor 61.4 4.4 0.00015 30.6 2.3 21 42-62 44-65 (324)
174 3pxi_A Negative regulator of g 61.3 5.5 0.00019 34.2 3.2 16 47-62 523-538 (758)
175 1kgd_A CASK, peripheral plasma 61.3 2.1 7.1E-05 29.7 0.4 16 47-62 7-22 (180)
176 2v1x_A ATP-dependent DNA helic 61.3 5.8 0.0002 33.2 3.2 25 35-61 51-75 (591)
177 3sqw_A ATP-dependent RNA helic 60.9 5.6 0.00019 32.8 3.1 26 36-61 51-76 (579)
178 1ye8_A Protein THEP1, hypothet 60.7 2 6.8E-05 30.2 0.2 15 48-62 3-17 (178)
179 1ly1_A Polynucleotide kinase; 60.6 3 0.0001 28.2 1.2 16 47-62 4-19 (181)
180 3tau_A Guanylate kinase, GMP k 60.5 2.2 7.4E-05 30.4 0.4 17 46-62 9-25 (208)
181 2db3_A ATP-dependent RNA helic 60.2 5 0.00017 31.9 2.6 24 36-61 86-109 (434)
182 2qag_C Septin-7; cell cycle, c 59.9 2.3 8E-05 34.2 0.6 23 40-62 26-48 (418)
183 2ehv_A Hypothetical protein PH 59.9 2.3 7.7E-05 30.6 0.4 17 46-62 31-47 (251)
184 1qvr_A CLPB protein; coiled co 59.8 5.9 0.0002 34.6 3.1 17 46-62 589-605 (854)
185 1xti_A Probable ATP-dependent 59.3 5.4 0.00018 30.5 2.6 25 36-62 38-62 (391)
186 1gm5_A RECG; helicase, replica 59.3 5.3 0.00018 34.8 2.7 27 36-62 380-406 (780)
187 1odf_A YGR205W, hypothetical 3 59.2 5.8 0.0002 30.1 2.7 20 43-62 29-48 (290)
188 2gk6_A Regulator of nonsense t 58.9 3.8 0.00013 34.5 1.7 17 47-63 197-213 (624)
189 1w36_D RECD, exodeoxyribonucle 58.8 2.3 8E-05 35.8 0.4 18 45-62 164-181 (608)
190 4ag6_A VIRB4 ATPase, type IV s 58.5 2.3 7.8E-05 33.4 0.3 19 44-62 34-52 (392)
191 2dhr_A FTSH; AAA+ protein, hex 58.2 2.3 8E-05 35.1 0.3 16 47-62 66-81 (499)
192 3trf_A Shikimate kinase, SK; a 58.1 3.5 0.00012 28.2 1.2 16 47-62 7-22 (185)
193 4a2p_A RIG-I, retinoic acid in 58.1 5.7 0.00019 32.0 2.6 25 36-62 15-39 (556)
194 2bdt_A BH3686; alpha-beta prot 57.6 2.6 9E-05 29.1 0.5 16 47-62 4-19 (189)
195 1lvg_A Guanylate kinase, GMP k 57.5 2.4 8.1E-05 30.1 0.2 16 47-62 6-21 (198)
196 3kta_A Chromosome segregation 57.3 2.5 8.6E-05 29.0 0.3 16 47-62 28-43 (182)
197 3iij_A Coilin-interacting nucl 57.3 3 0.0001 28.6 0.7 17 46-62 12-28 (180)
198 1uaa_A REP helicase, protein ( 57.1 3.2 0.00011 35.1 0.9 20 44-63 14-33 (673)
199 1r6b_X CLPA protein; AAA+, N-t 57.1 7.4 0.00025 33.3 3.3 17 46-62 489-505 (758)
200 2yvu_A Probable adenylyl-sulfa 56.7 4.2 0.00014 28.0 1.4 18 45-62 13-30 (186)
201 2j41_A Guanylate kinase; GMP, 56.4 2.8 9.6E-05 29.2 0.4 16 47-62 8-23 (207)
202 1znw_A Guanylate kinase, GMP k 55.9 2.9 0.0001 29.6 0.5 16 47-62 22-37 (207)
203 1f2t_A RAD50 ABC-ATPase; DNA d 55.8 3.4 0.00011 28.0 0.7 16 47-62 25-40 (149)
204 1a5t_A Delta prime, HOLB; zinc 55.4 6.9 0.00024 30.0 2.6 27 36-62 14-41 (334)
205 2ze6_A Isopentenyl transferase 55.3 4.1 0.00014 30.1 1.2 16 47-62 3-18 (253)
206 3lnc_A Guanylate kinase, GMP k 55.0 3.7 0.00013 29.5 0.9 16 47-62 29-44 (231)
207 3kb2_A SPBC2 prophage-derived 55.0 4.4 0.00015 27.1 1.3 16 47-62 3-18 (173)
208 4gl2_A Interferon-induced heli 54.9 6.4 0.00022 33.0 2.5 25 36-62 15-39 (699)
209 1rj9_A FTSY, signal recognitio 54.9 3.5 0.00012 31.6 0.8 17 46-62 103-119 (304)
210 2ce7_A Cell division protein F 54.8 2.8 9.6E-05 34.4 0.2 17 46-62 50-66 (476)
211 2ykg_A Probable ATP-dependent 54.7 6.7 0.00023 32.9 2.6 24 37-62 22-45 (696)
212 3uie_A Adenylyl-sulfate kinase 54.7 6.6 0.00023 27.5 2.2 20 43-62 23-42 (200)
213 1kag_A SKI, shikimate kinase I 54.5 4 0.00014 27.6 1.0 16 47-62 6-21 (173)
214 3vaa_A Shikimate kinase, SK; s 54.5 4.3 0.00015 28.4 1.2 16 47-62 27-42 (199)
215 2ga8_A Hypothetical 39.9 kDa p 54.2 13 0.00044 29.4 4.0 21 42-62 21-41 (359)
216 2jlq_A Serine protease subunit 54.2 4.3 0.00015 32.6 1.2 24 37-61 12-35 (451)
217 3tbk_A RIG-I helicase domain; 54.0 7.3 0.00025 31.2 2.6 24 37-62 13-36 (555)
218 3e70_C DPA, signal recognition 53.9 9.4 0.00032 29.5 3.1 18 45-62 129-146 (328)
219 1hv8_A Putative ATP-dependent 53.7 7.3 0.00025 29.3 2.4 25 37-62 37-61 (367)
220 2fna_A Conserved hypothetical 53.5 5.9 0.0002 29.8 1.9 17 46-62 31-47 (357)
221 3sop_A Neuronal-specific septi 53.2 3.4 0.00012 31.0 0.5 17 46-62 3-19 (270)
222 1fuu_A Yeast initiation factor 53.1 4.4 0.00015 31.0 1.1 24 36-61 51-74 (394)
223 1v5w_A DMC1, meiotic recombina 52.8 6.4 0.00022 30.4 2.0 28 35-62 109-139 (343)
224 1kht_A Adenylate kinase; phosp 52.5 4.5 0.00015 27.6 1.0 16 47-62 5-20 (192)
225 1zj6_A ADP-ribosylation factor 52.3 8.4 0.00029 26.2 2.4 23 40-62 11-33 (187)
226 2eyq_A TRCF, transcription-rep 52.3 12 0.00041 34.0 3.9 28 34-61 613-640 (1151)
227 1z6g_A Guanylate kinase; struc 51.4 3.4 0.00012 29.7 0.2 16 47-62 25-40 (218)
228 3b9q_A Chloroplast SRP recepto 51.4 4.7 0.00016 30.8 1.0 17 46-62 101-117 (302)
229 1knq_A Gluconate kinase; ALFA/ 51.3 5.3 0.00018 27.1 1.2 17 46-62 9-25 (175)
230 2qor_A Guanylate kinase; phosp 51.2 4.8 0.00016 28.3 1.0 16 47-62 14-29 (204)
231 2gno_A DNA polymerase III, gam 51.2 7.6 0.00026 29.6 2.2 29 34-62 7-35 (305)
232 1rif_A DAR protein, DNA helica 51.1 5.8 0.0002 29.4 1.5 23 38-62 123-145 (282)
233 1htw_A HI0065; nucleotide-bind 51.1 3.9 0.00013 28.2 0.5 18 45-62 33-50 (158)
234 2rhm_A Putative kinase; P-loop 50.8 6.5 0.00022 26.9 1.6 17 46-62 6-22 (193)
235 1pzn_A RAD51, DNA repair and r 50.7 7.3 0.00025 30.3 2.0 28 35-62 118-148 (349)
236 2xzl_A ATP-dependent helicase 50.5 6.1 0.00021 34.5 1.7 16 47-62 377-392 (802)
237 1s96_A Guanylate kinase, GMP k 50.3 4 0.00014 29.6 0.4 16 47-62 18-33 (219)
238 2bbw_A Adenylate kinase 4, AK4 50.0 4.1 0.00014 29.6 0.4 17 46-62 28-44 (246)
239 2gza_A Type IV secretion syste 49.5 3.6 0.00012 32.2 0.1 19 42-62 174-192 (361)
240 3cm0_A Adenylate kinase; ATP-b 49.4 5.9 0.0002 27.1 1.2 16 47-62 6-21 (186)
241 3cf2_A TER ATPase, transitiona 49.3 8.9 0.0003 33.6 2.5 65 20-84 208-294 (806)
242 2fwr_A DNA repair protein RAD2 49.3 8.3 0.00029 30.6 2.2 23 38-62 103-125 (472)
243 3e1s_A Exodeoxyribonuclease V, 49.1 4.2 0.00014 34.0 0.4 18 45-62 204-221 (574)
244 3m6a_A ATP-dependent protease 48.8 4.4 0.00015 33.6 0.5 18 45-62 108-125 (543)
245 2pt7_A CAG-ALFA; ATPase, prote 48.8 3.7 0.00013 31.8 0.0 16 47-62 173-188 (330)
246 2i1q_A DNA repair and recombin 48.7 7.8 0.00027 29.4 1.9 28 35-62 85-115 (322)
247 1tev_A UMP-CMP kinase; ploop, 48.6 6.2 0.00021 26.9 1.2 17 46-62 4-20 (196)
248 2wjy_A Regulator of nonsense t 48.5 7.1 0.00024 34.1 1.7 17 47-63 373-389 (800)
249 2vli_A Antibiotic resistance p 48.5 6.7 0.00023 26.6 1.4 17 46-62 6-22 (183)
250 2i3b_A HCR-ntpase, human cance 48.4 4.2 0.00014 28.9 0.3 16 47-62 3-18 (189)
251 1nks_A Adenylate kinase; therm 48.3 5.9 0.0002 27.0 1.0 16 47-62 3-18 (194)
252 3t61_A Gluconokinase; PSI-biol 47.9 5.8 0.0002 27.7 1.0 18 45-62 18-35 (202)
253 1gku_B Reverse gyrase, TOP-RG; 47.9 9.8 0.00034 34.2 2.6 23 36-60 64-86 (1054)
254 2b8t_A Thymidine kinase; deoxy 47.8 4.1 0.00014 29.9 0.2 18 45-62 12-29 (223)
255 2r2a_A Uncharacterized protein 47.7 4.3 0.00015 29.1 0.2 16 47-62 7-22 (199)
256 3kl4_A SRP54, signal recogniti 47.5 20 0.0007 28.9 4.3 18 45-62 97-114 (433)
257 2z43_A DNA repair and recombin 47.5 7.4 0.00025 29.7 1.6 28 35-62 94-124 (324)
258 3tif_A Uncharacterized ABC tra 47.4 4.8 0.00016 29.5 0.5 16 47-62 33-48 (235)
259 1pjr_A PCRA; DNA repair, DNA r 47.4 5.1 0.00018 34.3 0.7 20 44-63 23-42 (724)
260 1y63_A LMAJ004144AAA protein; 47.4 6.7 0.00023 27.1 1.2 17 46-62 11-27 (184)
261 3qks_A DNA double-strand break 47.2 5.5 0.00019 28.3 0.7 17 46-62 24-40 (203)
262 3t5d_A Septin-7; GTP-binding p 47.2 4.8 0.00016 29.9 0.4 21 42-62 5-25 (274)
263 3k1j_A LON protease, ATP-depen 47.0 9.2 0.00031 32.0 2.2 21 40-62 57-77 (604)
264 2qag_A Septin-2, protein NEDD5 46.8 5.3 0.00018 31.2 0.6 23 40-62 32-54 (361)
265 2orw_A Thymidine kinase; TMTK, 46.8 3.9 0.00013 28.7 -0.1 16 47-62 5-20 (184)
266 2px0_A Flagellar biosynthesis 46.7 4.7 0.00016 30.7 0.3 17 46-62 106-122 (296)
267 1w4r_A Thymidine kinase; type 46.6 5.5 0.00019 28.7 0.7 26 37-62 12-38 (195)
268 4eun_A Thermoresistant glucoki 46.5 6.9 0.00023 27.4 1.2 17 46-62 30-46 (200)
269 2r8r_A Sensor protein; KDPD, P 46.4 5 0.00017 29.7 0.4 18 46-63 7-24 (228)
270 1e6c_A Shikimate kinase; phosp 46.4 6.5 0.00022 26.4 1.0 16 47-62 4-19 (173)
271 1wp9_A ATP-dependent RNA helic 46.3 11 0.00036 29.3 2.4 24 36-62 17-40 (494)
272 2v6i_A RNA helicase; membrane, 46.2 8.9 0.00031 30.5 1.9 16 47-62 4-19 (431)
273 2ce2_X GTPase HRAS; signaling 46.2 4.5 0.00015 26.4 0.1 16 47-62 5-20 (166)
274 1uf9_A TT1252 protein; P-loop, 46.1 8.3 0.00028 26.6 1.6 20 43-62 6-25 (203)
275 2yhs_A FTSY, cell division pro 46.0 11 0.00038 31.2 2.4 17 46-62 294-310 (503)
276 1via_A Shikimate kinase; struc 45.9 6.6 0.00023 26.7 1.0 16 47-62 6-21 (175)
277 2ged_A SR-beta, signal recogni 45.8 5.2 0.00018 27.3 0.4 19 44-62 47-65 (193)
278 2zr9_A Protein RECA, recombina 45.6 8.3 0.00028 30.1 1.6 28 35-62 47-78 (349)
279 2dyk_A GTP-binding protein; GT 45.5 4.9 0.00017 26.3 0.2 16 47-62 3-18 (161)
280 2og2_A Putative signal recogni 45.5 6.6 0.00022 30.9 1.0 17 46-62 158-174 (359)
281 4a4z_A Antiviral helicase SKI2 45.2 12 0.00041 33.5 2.7 24 36-61 47-70 (997)
282 2iyv_A Shikimate kinase, SK; t 45.2 7 0.00024 26.7 1.0 16 47-62 4-19 (184)
283 3asz_A Uridine kinase; cytidin 45.1 5.2 0.00018 28.1 0.3 16 47-62 8-23 (211)
284 3dm5_A SRP54, signal recogniti 45.1 24 0.00083 28.6 4.3 18 45-62 100-117 (443)
285 1c9k_A COBU, adenosylcobinamid 44.8 6.7 0.00023 27.8 0.9 15 48-62 2-16 (180)
286 2pt5_A Shikimate kinase, SK; a 44.3 7.9 0.00027 25.9 1.2 16 47-62 2-17 (168)
287 1ex7_A Guanylate kinase; subst 44.1 5.3 0.00018 28.4 0.2 15 48-62 4-18 (186)
288 1ksh_A ARF-like protein 2; sma 44.1 6.9 0.00024 26.5 0.9 20 43-62 16-35 (186)
289 1z2a_A RAS-related protein RAB 43.8 5.4 0.00019 26.2 0.3 17 46-62 6-22 (168)
290 1f6b_A SAR1; gtpases, N-termin 43.5 9.2 0.00031 26.5 1.4 28 35-62 14-42 (198)
291 1ypw_A Transitional endoplasmi 43.5 5.5 0.00019 34.7 0.3 41 45-85 238-295 (806)
292 1svm_A Large T antigen; AAA+ f 43.5 14 0.00047 29.2 2.6 18 45-62 169-186 (377)
293 2z83_A Helicase/nucleoside tri 43.4 9.8 0.00033 30.6 1.8 15 47-61 23-37 (459)
294 3a4m_A L-seryl-tRNA(SEC) kinas 43.1 9.8 0.00033 28.0 1.6 17 46-62 5-21 (260)
295 3ney_A 55 kDa erythrocyte memb 42.9 6.2 0.00021 28.4 0.4 16 47-62 21-36 (197)
296 2oca_A DAR protein, ATP-depend 42.9 10 0.00035 30.4 1.8 23 38-62 123-145 (510)
297 3qf7_A RAD50; ABC-ATPase, ATPa 42.5 7 0.00024 30.6 0.7 16 47-62 25-40 (365)
298 2iut_A DNA translocase FTSK; n 42.5 5.7 0.0002 33.4 0.2 17 46-62 215-231 (574)
299 4a2q_A RIG-I, retinoic acid in 42.4 14 0.00046 31.9 2.6 25 36-62 256-280 (797)
300 1oyw_A RECQ helicase, ATP-depe 42.4 7.1 0.00024 32.0 0.8 25 36-62 33-57 (523)
301 3crm_A TRNA delta(2)-isopenten 42.3 8.5 0.00029 29.9 1.2 17 46-62 6-22 (323)
302 1nlf_A Regulatory protein REPA 42.2 6 0.00021 29.3 0.3 17 46-62 31-47 (279)
303 1ukz_A Uridylate kinase; trans 42.2 8.9 0.00031 26.6 1.2 18 45-62 15-32 (203)
304 2pcj_A ABC transporter, lipopr 42.2 6 0.00021 28.7 0.3 15 48-62 33-47 (224)
305 3a8t_A Adenylate isopentenyltr 42.2 8.6 0.0003 30.1 1.2 16 47-62 42-57 (339)
306 2bwj_A Adenylate kinase 5; pho 42.2 8.5 0.00029 26.4 1.1 16 47-62 14-29 (199)
307 2onk_A Molybdate/tungstate ABC 42.1 6.4 0.00022 29.0 0.4 16 47-62 26-41 (240)
308 1ek0_A Protein (GTP-binding pr 42.1 6 0.0002 26.0 0.3 16 47-62 5-20 (170)
309 1c4o_A DNA nucleotide excision 42.0 23 0.00078 30.0 3.9 39 20-63 8-46 (664)
310 1qf9_A UMP/CMP kinase, protein 42.0 8.6 0.00029 26.1 1.1 16 47-62 8-23 (194)
311 2obl_A ESCN; ATPase, hydrolase 41.9 8.9 0.0003 29.9 1.3 28 35-62 60-88 (347)
312 1zd8_A GTP:AMP phosphotransfer 41.9 7.8 0.00027 27.6 0.9 17 46-62 8-24 (227)
313 3fb4_A Adenylate kinase; psych 41.8 8.4 0.00029 27.0 1.0 15 48-62 3-17 (216)
314 2fu5_C RAS-related protein RAB 41.5 10 0.00034 25.5 1.3 17 46-62 9-25 (183)
315 2f9l_A RAB11B, member RAS onco 41.5 6.2 0.00021 27.3 0.3 17 46-62 6-22 (199)
316 2c95_A Adenylate kinase 1; tra 41.5 8.8 0.0003 26.3 1.1 17 46-62 10-26 (196)
317 2cbz_A Multidrug resistance-as 41.5 6.7 0.00023 28.7 0.5 16 47-62 33-48 (237)
318 2cdn_A Adenylate kinase; phosp 41.4 11 0.00038 26.1 1.6 20 43-62 18-37 (201)
319 1g6h_A High-affinity branched- 41.4 6.7 0.00023 29.0 0.5 16 47-62 35-50 (257)
320 1yks_A Genome polyprotein [con 41.3 11 0.00037 30.2 1.7 20 41-62 6-25 (440)
321 1ji0_A ABC transporter; ATP bi 41.3 6.8 0.00023 28.7 0.5 16 47-62 34-49 (240)
322 2plr_A DTMP kinase, probable t 41.3 11 0.00036 26.1 1.5 17 46-62 5-21 (213)
323 2jaq_A Deoxyguanosine kinase; 41.3 8.5 0.00029 26.5 1.0 15 48-62 3-17 (205)
324 3u4q_A ATP-dependent helicase/ 41.3 7.2 0.00024 35.6 0.7 20 44-63 22-41 (1232)
325 1zuh_A Shikimate kinase; alpha 41.3 9.5 0.00033 25.6 1.2 17 46-62 8-24 (168)
326 3auy_A DNA double-strand break 41.2 9.7 0.00033 29.7 1.4 17 46-62 26-42 (371)
327 1ky3_A GTP-binding protein YPT 41.1 6.3 0.00022 26.3 0.2 18 45-62 8-25 (182)
328 2p6r_A Afuhel308 helicase; pro 41.1 7.4 0.00025 32.9 0.7 20 41-62 38-57 (702)
329 1sgw_A Putative ABC transporte 41.0 6.3 0.00022 28.5 0.2 15 48-62 38-52 (214)
330 1vma_A Cell division protein F 41.0 8.6 0.00029 29.5 1.0 17 46-62 105-121 (306)
331 2b6h_A ADP-ribosylation factor 40.9 4.6 0.00016 27.9 -0.5 27 36-62 20-46 (192)
332 1z0j_A RAB-22, RAS-related pro 40.7 6.5 0.00022 25.9 0.2 17 46-62 7-23 (170)
333 1u8z_A RAS-related protein RAL 40.7 6.5 0.00022 25.7 0.3 17 46-62 5-21 (168)
334 2ius_A DNA translocase FTSK; n 40.7 6.4 0.00022 32.6 0.2 16 47-62 169-184 (512)
335 1aky_A Adenylate kinase; ATP:A 40.7 11 0.00036 26.7 1.4 17 46-62 5-21 (220)
336 1g5t_A COB(I)alamin adenosyltr 40.6 5 0.00017 29.0 -0.3 21 44-64 27-47 (196)
337 2yz2_A Putative ABC transporte 40.4 7.1 0.00024 29.1 0.5 16 47-62 35-50 (266)
338 2qmh_A HPR kinase/phosphorylas 40.4 10 0.00035 27.6 1.3 18 45-62 34-51 (205)
339 2zts_A Putative uncharacterize 40.2 10 0.00035 26.9 1.3 26 37-62 19-47 (251)
340 2if2_A Dephospho-COA kinase; a 40.1 8.7 0.0003 26.7 0.9 16 47-62 3-18 (204)
341 1nrj_B SR-beta, signal recogni 40.0 8.4 0.00029 26.9 0.8 20 43-62 10-29 (218)
342 2erx_A GTP-binding protein DI- 40.0 6.7 0.00023 25.8 0.2 17 46-62 4-20 (172)
343 1b0u_A Histidine permease; ABC 39.9 7.3 0.00025 29.0 0.4 15 48-62 35-49 (262)
344 3f9v_A Minichromosome maintena 39.9 6.5 0.00022 33.0 0.2 16 47-62 329-344 (595)
345 1g16_A RAS-related protein SEC 39.8 6.4 0.00022 25.9 0.1 16 47-62 5-20 (170)
346 3dl0_A Adenylate kinase; phosp 39.8 9.4 0.00032 26.8 1.0 15 48-62 3-17 (216)
347 2vhj_A Ntpase P4, P4; non- hyd 39.8 10 0.00035 29.6 1.3 16 47-62 125-140 (331)
348 2v9p_A Replication protein E1; 39.7 7.5 0.00026 29.9 0.5 18 45-62 126-143 (305)
349 1mv5_A LMRA, multidrug resista 39.7 8.3 0.00028 28.2 0.7 16 47-62 30-45 (243)
350 1zak_A Adenylate kinase; ATP:A 39.6 8.9 0.00031 27.2 0.9 16 47-62 7-22 (222)
351 2pbr_A DTMP kinase, thymidylat 39.4 9.6 0.00033 25.9 1.0 15 48-62 3-17 (195)
352 3foz_A TRNA delta(2)-isopenten 39.3 10 0.00035 29.5 1.2 17 46-62 11-27 (316)
353 3qkt_A DNA double-strand break 39.3 8.5 0.00029 29.6 0.7 17 46-62 24-40 (339)
354 1r2q_A RAS-related protein RAB 39.3 7 0.00024 25.7 0.3 17 46-62 7-23 (170)
355 1z08_A RAS-related protein RAB 39.3 6.9 0.00024 25.8 0.2 17 46-62 7-23 (170)
356 3gfo_A Cobalt import ATP-bindi 39.3 7.5 0.00026 29.3 0.4 15 48-62 37-51 (275)
357 2ff7_A Alpha-hemolysin translo 39.3 7.6 0.00026 28.6 0.5 16 47-62 37-52 (247)
358 1kao_A RAP2A; GTP-binding prot 39.2 7 0.00024 25.5 0.2 17 46-62 4-20 (167)
359 2ghi_A Transport protein; mult 39.1 7.6 0.00026 28.8 0.5 16 47-62 48-63 (260)
360 1wms_A RAB-9, RAB9, RAS-relate 39.1 7.1 0.00024 26.0 0.2 17 46-62 8-24 (177)
361 2pez_A Bifunctional 3'-phospho 39.1 12 0.00042 25.4 1.5 16 47-62 7-22 (179)
362 1c1y_A RAS-related protein RAP 39.0 7.1 0.00024 25.6 0.3 16 47-62 5-20 (167)
363 2pze_A Cystic fibrosis transme 38.9 7.7 0.00026 28.2 0.4 15 48-62 37-51 (229)
364 2lkc_A Translation initiation 38.8 7 0.00024 26.1 0.2 18 45-62 8-25 (178)
365 3aez_A Pantothenate kinase; tr 38.8 7.7 0.00026 29.8 0.4 18 45-62 90-107 (312)
366 1vpl_A ABC transporter, ATP-bi 38.7 7.8 0.00027 28.8 0.4 16 47-62 43-58 (256)
367 3sr0_A Adenylate kinase; phosp 38.6 10 0.00034 27.2 1.0 13 48-60 3-15 (206)
368 2nq2_C Hypothetical ABC transp 38.6 8 0.00028 28.6 0.5 15 48-62 34-48 (253)
369 1ak2_A Adenylate kinase isoenz 38.5 9.1 0.00031 27.5 0.8 19 44-62 15-33 (233)
370 1svi_A GTP-binding protein YSX 38.5 6.9 0.00023 26.7 0.1 18 45-62 23-40 (195)
371 1jjv_A Dephospho-COA kinase; P 38.4 11 0.00038 26.2 1.2 16 47-62 4-19 (206)
372 2olj_A Amino acid ABC transpor 38.4 8 0.00027 28.9 0.4 16 47-62 52-67 (263)
373 2wsm_A Hydrogenase expression/ 38.3 16 0.00053 25.5 2.0 20 43-62 28-47 (221)
374 1xx6_A Thymidine kinase; NESG, 38.2 6.2 0.00021 28.1 -0.2 16 47-62 10-25 (191)
375 1xjc_A MOBB protein homolog; s 38.2 8.1 0.00028 27.0 0.4 16 47-62 6-21 (169)
376 3pqc_A Probable GTP-binding pr 38.1 7 0.00024 26.5 0.1 17 46-62 24-40 (195)
377 3l9o_A ATP-dependent RNA helic 38.1 13 0.00045 33.6 1.9 24 37-62 193-216 (1108)
378 1e69_A Chromosome segregation 38.1 10 0.00035 28.8 1.1 16 47-62 26-41 (322)
379 1pui_A ENGB, probable GTP-bind 38.1 7.7 0.00026 26.9 0.3 18 45-62 26-43 (210)
380 2qi9_C Vitamin B12 import ATP- 38.1 8.1 0.00028 28.6 0.4 16 47-62 28-43 (249)
381 4g1u_C Hemin import ATP-bindin 38.0 8.1 0.00028 28.9 0.4 15 48-62 40-54 (266)
382 2d2e_A SUFC protein; ABC-ATPas 37.9 8.2 0.00028 28.4 0.5 16 47-62 31-46 (250)
383 1oix_A RAS-related protein RAB 37.9 7.1 0.00024 26.9 0.1 17 46-62 30-46 (191)
384 2dpy_A FLII, flagellum-specifi 37.8 12 0.00042 30.1 1.5 28 35-62 146-174 (438)
385 1sq5_A Pantothenate kinase; P- 37.8 21 0.00072 26.9 2.8 18 45-62 80-97 (308)
386 3con_A GTPase NRAS; structural 37.8 7.7 0.00026 26.3 0.3 17 46-62 22-38 (190)
387 3exa_A TRNA delta(2)-isopenten 37.8 11 0.00038 29.4 1.2 16 47-62 5-20 (322)
388 2zu0_C Probable ATP-dependent 37.8 8.2 0.00028 28.8 0.4 16 47-62 48-63 (267)
389 3umf_A Adenylate kinase; rossm 37.7 10 0.00035 27.5 1.0 15 47-61 31-45 (217)
390 1ltq_A Polynucleotide kinase; 37.5 11 0.00039 27.9 1.2 16 47-62 4-19 (301)
391 1fzq_A ADP-ribosylation factor 37.5 12 0.00042 25.3 1.3 19 44-62 15-33 (181)
392 2z0h_A DTMP kinase, thymidylat 37.3 11 0.00037 25.8 1.0 15 48-62 3-17 (197)
393 2y8e_A RAB-protein 6, GH09086P 37.2 7.5 0.00026 25.8 0.1 17 46-62 15-31 (179)
394 1upt_A ARL1, ADP-ribosylation 37.1 8 0.00027 25.5 0.3 18 45-62 7-24 (171)
395 4a2w_A RIG-I, retinoic acid in 37.1 18 0.00063 31.9 2.6 25 36-62 256-280 (936)
396 1cke_A CK, MSSA, protein (cyti 37.0 12 0.00041 26.4 1.2 16 47-62 7-22 (227)
397 1z0f_A RAB14, member RAS oncog 37.0 8 0.00027 25.7 0.3 17 46-62 16-32 (179)
398 1cr0_A DNA primase/helicase; R 36.9 8.2 0.00028 28.7 0.3 26 37-62 25-52 (296)
399 2ixe_A Antigen peptide transpo 36.9 8.7 0.0003 28.8 0.5 16 47-62 47-62 (271)
400 3p32_A Probable GTPase RV1496/ 36.9 24 0.00083 27.2 3.1 29 34-62 66-96 (355)
401 3tw8_B RAS-related protein RAB 36.9 8 0.00027 25.7 0.2 17 46-62 10-26 (181)
402 2ihy_A ABC transporter, ATP-bi 36.8 8.7 0.0003 28.9 0.4 15 48-62 50-64 (279)
403 2pjz_A Hypothetical protein ST 36.8 8.7 0.0003 28.7 0.4 16 47-62 32-47 (263)
404 1r8s_A ADP-ribosylation factor 36.7 8.2 0.00028 25.3 0.3 16 47-62 2-17 (164)
405 1np6_A Molybdopterin-guanine d 36.6 8.8 0.0003 26.8 0.4 16 47-62 8-23 (174)
406 2fn4_A P23, RAS-related protei 36.6 7.7 0.00026 25.8 0.1 17 46-62 10-26 (181)
407 3q72_A GTP-binding protein RAD 36.6 7.8 0.00027 25.5 0.1 16 47-62 4-19 (166)
408 2xgj_A ATP-dependent RNA helic 36.5 16 0.00054 32.8 2.1 23 38-62 96-118 (1010)
409 1m7g_A Adenylylsulfate kinase; 36.5 14 0.00048 26.0 1.5 18 45-62 25-42 (211)
410 2v3c_C SRP54, signal recogniti 36.4 12 0.00043 30.0 1.3 17 46-62 100-116 (432)
411 1e4v_A Adenylate kinase; trans 36.4 11 0.00037 26.6 0.9 15 48-62 3-17 (214)
412 2d7d_A Uvrabc system protein B 36.2 19 0.00066 30.5 2.5 81 18-104 10-97 (661)
413 1z47_A CYSA, putative ABC-tran 36.2 9 0.00031 30.1 0.5 16 47-62 43-58 (355)
414 3fvq_A Fe(3+) IONS import ATP- 36.1 8.6 0.00029 30.3 0.3 16 47-62 32-47 (359)
415 2efe_B Small GTP-binding prote 36.0 8.4 0.00029 25.7 0.2 18 45-62 12-29 (181)
416 2yyz_A Sugar ABC transporter, 35.9 9.2 0.00031 30.1 0.5 16 47-62 31-46 (359)
417 3d3q_A TRNA delta(2)-isopenten 35.8 12 0.00043 29.2 1.2 16 47-62 9-24 (340)
418 2yc2_C IFT27, small RAB-relate 35.8 10 0.00035 25.9 0.7 18 45-62 20-37 (208)
419 2wjg_A FEOB, ferrous iron tran 35.8 8.6 0.00029 26.0 0.3 16 47-62 9-24 (188)
420 2va8_A SSO2462, SKI2-type heli 35.7 11 0.00039 31.8 1.0 18 45-62 46-63 (715)
421 2wwf_A Thymidilate kinase, put 35.7 11 0.00039 26.1 0.9 17 46-62 11-27 (212)
422 2nzj_A GTP-binding protein REM 35.6 8.7 0.0003 25.4 0.2 17 46-62 5-21 (175)
423 4ddu_A Reverse gyrase; topoiso 35.4 18 0.0006 32.8 2.2 25 36-62 86-110 (1104)
424 3q85_A GTP-binding protein REM 35.4 8.8 0.0003 25.3 0.3 16 47-62 4-19 (169)
425 1g41_A Heat shock protein HSLU 35.3 12 0.0004 30.5 1.0 17 46-62 51-67 (444)
426 3rlf_A Maltose/maltodextrin im 35.3 9.5 0.00032 30.3 0.4 16 47-62 31-46 (381)
427 2it1_A 362AA long hypothetical 35.3 9.5 0.00032 30.0 0.4 16 47-62 31-46 (362)
428 2hf9_A Probable hydrogenase ni 35.2 23 0.00078 24.7 2.5 20 43-62 36-55 (226)
429 1g29_1 MALK, maltose transport 35.2 9.5 0.00033 30.1 0.5 16 47-62 31-46 (372)
430 2bme_A RAB4A, RAS-related prot 35.2 8.4 0.00029 25.9 0.1 17 46-62 11-27 (186)
431 2a9k_A RAS-related protein RAL 35.1 9 0.00031 25.6 0.3 17 46-62 19-35 (187)
432 3rc3_A ATP-dependent RNA helic 35.1 13 0.00043 31.9 1.2 40 47-86 157-202 (677)
433 1j8m_F SRP54, signal recogniti 35.0 60 0.0021 24.4 5.0 16 47-62 100-115 (297)
434 3clv_A RAB5 protein, putative; 35.0 9 0.00031 25.9 0.2 18 45-62 7-24 (208)
435 2qt1_A Nicotinamide riboside k 35.0 13 0.00044 25.9 1.1 16 47-62 23-38 (207)
436 3kkq_A RAS-related protein M-R 34.9 9.1 0.00031 25.7 0.3 18 45-62 18-35 (183)
437 3be4_A Adenylate kinase; malar 34.9 12 0.0004 26.5 0.9 16 47-62 7-22 (217)
438 2xb4_A Adenylate kinase; ATP-b 34.8 12 0.00042 26.6 1.0 15 48-62 3-17 (223)
439 3bc1_A RAS-related protein RAB 34.8 9.1 0.00031 25.7 0.3 17 46-62 12-28 (195)
440 4dsu_A GTPase KRAS, isoform 2B 34.8 9.1 0.00031 25.7 0.2 17 46-62 5-21 (189)
441 2v54_A DTMP kinase, thymidylat 34.8 13 0.00043 25.7 1.0 16 47-62 6-21 (204)
442 2bov_A RAla, RAS-related prote 34.7 9.2 0.00031 26.2 0.3 17 46-62 15-31 (206)
443 2o5v_A DNA replication and rep 34.5 11 0.00038 29.5 0.7 16 47-62 28-43 (359)
444 2cxx_A Probable GTP-binding pr 34.4 8.7 0.0003 25.9 0.1 16 47-62 3-18 (190)
445 1h65_A Chloroplast outer envel 34.4 21 0.00071 26.2 2.2 29 34-62 26-56 (270)
446 1mh1_A RAC1; GTP-binding, GTPa 34.3 9.4 0.00032 25.5 0.3 17 46-62 6-22 (186)
447 2oil_A CATX-8, RAS-related pro 34.2 9.4 0.00032 26.0 0.3 17 46-62 26-42 (193)
448 2wji_A Ferrous iron transport 34.1 9.5 0.00033 25.4 0.3 16 47-62 5-20 (165)
449 3tlx_A Adenylate kinase 2; str 33.9 13 0.00045 27.0 1.0 19 44-62 28-46 (243)
450 1v43_A Sugar-binding transport 33.9 10 0.00035 30.0 0.4 16 47-62 39-54 (372)
451 1vht_A Dephospho-COA kinase; s 33.7 14 0.00049 25.9 1.2 17 46-62 5-21 (218)
452 2hxs_A RAB-26, RAS-related pro 33.4 9.9 0.00034 25.3 0.2 18 45-62 6-23 (178)
453 3lxx_A GTPase IMAP family memb 33.1 10 0.00034 27.2 0.2 19 44-62 28-46 (239)
454 2atv_A RERG, RAS-like estrogen 33.0 13 0.00045 25.4 0.8 19 44-62 27-45 (196)
455 1u94_A RECA protein, recombina 32.9 18 0.00062 28.2 1.7 28 35-62 49-80 (356)
456 3crv_A XPD/RAD3 related DNA he 32.8 27 0.00093 28.6 2.9 25 36-62 15-39 (551)
457 2jeo_A Uridine-cytidine kinase 32.8 11 0.00038 27.3 0.5 16 47-62 27-42 (245)
458 1tf7_A KAIC; homohexamer, hexa 32.6 12 0.00043 30.5 0.8 28 35-62 26-56 (525)
459 2g6b_A RAS-related protein RAB 32.6 10 0.00036 25.2 0.3 17 46-62 11-27 (180)
460 1nn5_A Similar to deoxythymidy 32.6 15 0.00051 25.5 1.1 17 46-62 10-26 (215)
461 3bh0_A DNAB-like replicative h 32.4 27 0.00092 26.4 2.6 28 35-62 56-85 (315)
462 1nij_A Hypothetical protein YJ 32.4 13 0.00045 28.3 0.8 16 47-62 6-21 (318)
463 3l0i_B RAS-related protein RAB 32.2 16 0.00054 25.1 1.2 17 46-62 34-50 (199)
464 3bwd_D RAC-like GTP-binding pr 32.2 11 0.00037 25.2 0.3 19 44-62 7-25 (182)
465 1zu4_A FTSY; GTPase, signal re 32.1 14 0.00049 28.4 1.0 16 47-62 107-122 (320)
466 2h57_A ADP-ribosylation factor 32.0 10 0.00035 25.8 0.1 19 44-62 20-38 (190)
467 2zej_A Dardarin, leucine-rich 32.0 11 0.00037 25.7 0.2 16 47-62 4-19 (184)
468 3tqc_A Pantothenate kinase; bi 32.0 15 0.0005 28.4 1.0 16 47-62 94-109 (321)
469 1z06_A RAS-related protein RAB 32.0 11 0.00037 25.6 0.2 19 44-62 19-37 (189)
470 2bbs_A Cystic fibrosis transme 31.6 11 0.00038 28.5 0.3 15 48-62 67-81 (290)
471 1vg8_A RAS-related protein RAB 31.4 11 0.00038 25.8 0.2 18 45-62 8-25 (207)
472 1x3s_A RAS-related protein RAB 31.3 11 0.00039 25.4 0.3 17 46-62 16-32 (195)
473 2zj8_A DNA helicase, putative 31.2 14 0.00046 31.4 0.8 17 46-62 40-56 (720)
474 2xau_A PRE-mRNA-splicing facto 31.1 16 0.00055 31.6 1.2 15 47-61 111-125 (773)
475 3cf2_A TER ATPase, transitiona 31.1 12 0.00041 32.8 0.4 40 46-85 512-568 (806)
476 3th5_A RAS-related C3 botulinu 37.3 10 0.00035 26.2 0.0 22 41-62 26-47 (204)
477 2il1_A RAB12; G-protein, GDP, 31.0 12 0.00039 25.7 0.3 18 45-62 26-43 (192)
478 2w00_A HSDR, R.ECOR124I; ATP-b 30.8 16 0.00053 33.0 1.1 16 47-62 302-317 (1038)
479 2xtp_A GTPase IMAP family memb 30.8 13 0.00045 26.9 0.6 19 44-62 21-39 (260)
480 3hr8_A Protein RECA; alpha and 30.8 13 0.00043 29.3 0.5 28 35-62 47-78 (356)
481 2vl7_A XPD; helicase, unknown 30.7 31 0.001 28.3 2.8 23 38-62 21-43 (540)
482 1ypw_A Transitional endoplasmi 30.7 7 0.00024 34.1 -1.1 17 46-62 512-528 (806)
483 2gf9_A RAS-related protein RAB 30.7 12 0.0004 25.4 0.3 17 46-62 23-39 (189)
484 1m7b_A RND3/RHOE small GTP-bin 30.7 11 0.00038 25.5 0.1 18 45-62 7-24 (184)
485 3vkw_A Replicase large subunit 30.6 11 0.00037 30.7 0.1 18 47-64 163-180 (446)
486 1zbd_A Rabphilin-3A; G protein 30.5 12 0.0004 25.7 0.3 17 46-62 9-25 (203)
487 2fg5_A RAB-22B, RAS-related pr 30.4 11 0.00038 25.7 0.1 18 45-62 23-40 (192)
488 3tkl_A RAS-related protein RAB 30.3 12 0.00041 25.3 0.3 17 46-62 17-33 (196)
489 3zvl_A Bifunctional polynucleo 30.3 19 0.00064 28.6 1.4 20 43-62 256-275 (416)
490 3def_A T7I23.11 protein; chlor 30.3 27 0.00091 25.5 2.2 19 44-62 35-53 (262)
491 2bcg_Y Protein YP2, GTP-bindin 30.1 11 0.00039 25.9 0.1 17 46-62 9-25 (206)
492 2a5j_A RAS-related protein RAB 30.1 12 0.00042 25.5 0.3 17 46-62 22-38 (191)
493 3c5c_A RAS-like protein 12; GD 30.0 12 0.00042 25.5 0.2 19 44-62 20-38 (187)
494 2h17_A ADP-ribosylation factor 29.9 10 0.00036 25.5 -0.1 19 44-62 20-38 (181)
495 2p5s_A RAS and EF-hand domain 29.8 12 0.00042 25.7 0.3 19 44-62 27-45 (199)
496 1zd9_A ADP-ribosylation factor 29.8 12 0.00042 25.4 0.3 18 45-62 22-39 (188)
497 4bas_A ADP-ribosylation factor 29.8 12 0.00042 25.4 0.2 19 44-62 16-34 (199)
498 3t5g_A GTP-binding protein RHE 29.7 12 0.0004 25.1 0.1 17 46-62 7-23 (181)
499 2gf0_A GTP-binding protein DI- 29.7 12 0.0004 25.5 0.1 18 45-62 8-25 (199)
500 3ake_A Cytidylate kinase; CMP 29.6 19 0.00065 24.8 1.2 16 47-62 4-19 (208)
No 1
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=100.00 E-value=2.3e-44 Score=288.92 Aligned_cols=149 Identities=65% Similarity=1.123 Sum_probs=128.7
Q ss_pred CCeEEEeceEeccCCCC-CCCCCCHHHHHHHHhHHHHHHhhcCCCeeEEeeccCCCCCceeeccCCCCCCcHHHHHHHHH
Q psy12524 2 PPKTFAFDHCFYSLDPN-LPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYTMMGSQDNKGIIPRLCDSLF 80 (151)
Q Consensus 2 ~~k~f~fD~vf~~~d~~-~~~~~~q~~vy~~~~~~lv~~~~~G~~~~v~~yG~~~sGKt~t~~G~~~~~Gli~~~~~~lf 80 (151)
++|+|+||+|||++|.. .++.++|++||+.++.|+|+.+++|+|+||||||+|||||||||+|+..++||+||++++||
T Consensus 49 ~~k~F~FD~vF~~~d~~~~~~~a~Q~~vy~~~~~~lv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~lF 128 (354)
T 3gbj_A 49 QPKVFAYDHCFWSMDESVKEKYAGQDIVFKCLGENILQNAFDGYNACIFAYGQTGSGKSYTMMGTADQPGLIPRLCSGLF 128 (354)
T ss_dssp CCEEEECSEEEECSCTTCTTTBCCHHHHHHHHHHHHHHHHHTTCCEEEEEEECTTSSHHHHHTBCSSSBCHHHHHHHHHH
T ss_pred CceEEEeeEEeccCccccccccccHHHHHHHhhHHHHHHHhCCceeEEEeeCCCCCCCceEEecCCCCCchhhHHHHHHH
Confidence 47899999999988853 36779999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCceEEEEEEEEEEECCeeeecCCCCCCCceeeEEecCCCCeEEcCceEEEcCCHHHHhcCC
Q psy12524 81 DLIAKQESSELTYKVEVSYMEIYNEKVHDLLDPKANKQSLKVREHNVLGPYVDGLSQLAVTSFQARANPT 150 (151)
Q Consensus 81 ~~~~~~~~~~~~~~v~~S~~eiy~e~v~DLL~~~~~~~~l~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll 150 (151)
+.++.....++.|.|.+||+|||||+|+|||++...+..|+++|++.+|++|+||+++.|.|++|+.++|
T Consensus 129 ~~i~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~l~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll 198 (354)
T 3gbj_A 129 ERTQKEENEEQSFKVEVSYMEIYNEKVRDLLDPKGSRQTLKVREHSVLGPYVDGLSKLAVTSYKDIESLM 198 (354)
T ss_dssp HHHHHHCBTTEEEEEEEEEEEEETTEEEETTC------CBCBC------CCBTTCCCEEECSHHHHHHHH
T ss_pred HHHHhhcccccceeeeceeEEEecCeeeEccCCCCCCcceEEEEcCCCCEEEEeeEEEecCCHHHHHHHH
Confidence 9998777778899999999999999999999987667789999999999999999999999999998765
No 2
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=100.00 E-value=2.5e-43 Score=289.73 Aligned_cols=148 Identities=48% Similarity=0.884 Sum_probs=135.5
Q ss_pred CeEEEeceEeccCCCCCCCCCCHHHHHHHHhHHHHHHhhcCCCeeEEeeccCCCCCceeeccCCCCCCcHHHHHHHHHHH
Q psy12524 3 PKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYTMMGSQDNKGIIPRLCDSLFDL 82 (151)
Q Consensus 3 ~k~f~fD~vf~~~d~~~~~~~~q~~vy~~~~~~lv~~~~~G~~~~v~~yG~~~sGKt~t~~G~~~~~Gli~~~~~~lf~~ 82 (151)
+++|+||+|||+.+...++.++|++||+.++.|+|+.+++|+|+||||||+|||||||||+|+..++|||||++++||+.
T Consensus 95 ~~~F~FD~vF~~~~~~~~~~asQ~~Vy~~~~~plv~~~l~GyN~tIfAYGQTGSGKTyTM~G~~~~~GIipr~~~~lF~~ 174 (443)
T 2owm_A 95 EKSFTFDKSFWSHNTEDEHYATQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTMMGTPDQPGLIPRTCEDLFQR 174 (443)
T ss_dssp CEEEECSEEEEESCTTSTTCCCHHHHHHHHHHHHHHHHHTTCCEEEEEESSTTSSHHHHHTCCTTSCCHHHHHHHHHHHH
T ss_pred CceEecCeEeCCCCcCCccCCCHHHHHHhhhhhHHHHhhcCCceEEEEeCCCCCCCCEEeecCCCCCchHHHHHHHHHHH
Confidence 68999999999887666678999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhc--CCCceEEEEEEEEEEECCeeeecCCCCC---CCceeeEEecCCCCeEEcCceEEEcCCHHHHhcCC
Q psy12524 83 IAKQE--SSELTYKVEVSYMEIYNEKVHDLLDPKA---NKQSLKVREHNVLGPYVDGLSQLAVTSFQARANPT 150 (151)
Q Consensus 83 ~~~~~--~~~~~~~v~~S~~eiy~e~v~DLL~~~~---~~~~l~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll 150 (151)
++... ..++.|.|.+||+|||||+|+|||++.. ....|+|+|++.+|++|+||+++.|.|++|+.++|
T Consensus 175 i~~~~~~~~~~~~~V~vS~lEIYnE~i~DLL~~~~~~~~~~~l~ire~~~~g~~V~gl~e~~V~s~~e~~~ll 247 (443)
T 2owm_A 175 IASAQDETPNISYNVKVSYFEVYNEHVRDLLAPVVPNKPPYYLKVRESPTEGPYVKDLTEVPVRGLEEIIRWM 247 (443)
T ss_dssp HHHTTTTSTTCEEEEEEEEEEEETTEEEETTSCCCSSCCCCCCEEEEETTTEEEEETCCCEECCSHHHHHHHH
T ss_pred HHhhhcccCCceEEEEEEEEEEECCEeeEccCccccCCcccccceeECCCCCEeccCCEEEEcCCHHHHHHHH
Confidence 98653 3567999999999999999999998732 23469999999999999999999999999998765
No 3
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=100.00 E-value=9.6e-43 Score=278.97 Aligned_cols=140 Identities=40% Similarity=0.646 Sum_probs=131.1
Q ss_pred CCeEEEeceEeccCCCCCCCCCCHHHHHHHHhHHHHHHhhcCCCeeEEeeccCCCCCceeeccCCCCCCcHHHHHHHHHH
Q psy12524 2 PPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYTMMGSQDNKGIIPRLCDSLFD 81 (151)
Q Consensus 2 ~~k~f~fD~vf~~~d~~~~~~~~q~~vy~~~~~~lv~~~~~G~~~~v~~yG~~~sGKt~t~~G~~~~~Gli~~~~~~lf~ 81 (151)
.+++|+||+|| +++++|++||+.++.|+|+.+++|+|+||||||+|||||||||+|+..++||+||++++||+
T Consensus 42 ~~~~F~FD~Vf-------~~~~tQ~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTM~G~~~~~Giipr~~~~lF~ 114 (349)
T 1t5c_A 42 GSKSFNFDRVF-------HGNETTKNVYEEIAAPIIDSAIQGYNGTIFAYGQTASGKTYTMMGSEDHLGVIPRAIHDIFQ 114 (349)
T ss_dssp SSCEEECSCEE-------CTTSCHHHHHHHTTHHHHHHHHTTCCEEEEEEESTTSSHHHHHTBCSSSBCHHHHHHHHHHH
T ss_pred CCeEEECCEEE-------CCCCCHHHHHHHHHHHHHHHHHcCCccceeeecCCCCCCCeEEecCCCCCchHHHHHHHHHH
Confidence 35799999999 88999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCceEEEEEEEEEEECCeeeecCCCCCCCceeeEEecCCCCeEEcCceEEEcCCHHHHhcCC
Q psy12524 82 LIAKQESSELTYKVEVSYMEIYNEKVHDLLDPKANKQSLKVREHNVLGPYVDGLSQLAVTSFQARANPT 150 (151)
Q Consensus 82 ~~~~~~~~~~~~~v~~S~~eiy~e~v~DLL~~~~~~~~l~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll 150 (151)
.++.. .+..|.|++||+|||||+|+|||++.....+|+++||+.++++|+||+++.|.|.+|++++|
T Consensus 115 ~i~~~--~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~l~i~ed~~~~~~v~gl~~~~v~s~~e~~~ll 181 (349)
T 1t5c_A 115 KIKKF--PDREFLLRVSYMEIYNETITDLLCGTQKMKPLIIREDVNRNVYVADLTEEVVYTSEMALKWI 181 (349)
T ss_dssp HGGGC--TTEEEEEEEEEEEEETTEEEESSSSSCTTCCEEEEETTTTEEEETTCCCEECSSHHHHHHHH
T ss_pred HHHhC--cCCcEEEEEEEEEEeCCEEEEccCCCCCCCCceEEECCCCCEEecCCEEEEeCCHHHHHHHH
Confidence 98754 35689999999999999999999987666789999999999999999999999999998765
No 4
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=100.00 E-value=3.7e-42 Score=275.32 Aligned_cols=140 Identities=34% Similarity=0.588 Sum_probs=129.6
Q ss_pred CCeEEEeceEeccCCCCCCCCCCHHHHHHHHhHHHHHHhhcCCCeeEEeeccCCCCCceeeccC------CCCCCcHHHH
Q psy12524 2 PPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYTMMGS------QDNKGIIPRL 75 (151)
Q Consensus 2 ~~k~f~fD~vf~~~d~~~~~~~~q~~vy~~~~~~lv~~~~~G~~~~v~~yG~~~sGKt~t~~G~------~~~~Gli~~~ 75 (151)
++++|+||+|| +++++|++||+.++.|+|+++++|+|+||||||+|||||||||.|. ..++||+||+
T Consensus 48 ~~~~f~FD~Vf-------~~~~~Q~~vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~~~~Giipr~ 120 (344)
T 4a14_A 48 RDRHFGFHVVL-------AEDAGQEAVYQACVQPLLEAFFEGFNATVFAYGQTGSGKTYTMGEASVASLLEDEQGIVPRA 120 (344)
T ss_dssp TTEEEECSEEE-------CTTCCHHHHHHHHTHHHHHHHHTTCCEEEEEESSTTSSHHHHHCC--------CCCCHHHHH
T ss_pred ccceEEEEEEE-------ecCcchhHHHHHHHHHHHHHHHhhcCeeEEEecccCCCceEeecccchhhhhhcccCCchHH
Confidence 46899999999 8999999999999999999999999999999999999999999997 3679999999
Q ss_pred HHHHHHHHHhhcCCCceEEEEEEEEEEECCeeeecCCCCCCCceeeEEecCCCCeEEcCceEEEcCCHHHHhcCC
Q psy12524 76 CDSLFDLIAKQESSELTYKVEVSYMEIYNEKVHDLLDPKANKQSLKVREHNVLGPYVDGLSQLAVTSFQARANPT 150 (151)
Q Consensus 76 ~~~lf~~~~~~~~~~~~~~v~~S~~eiy~e~v~DLL~~~~~~~~l~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll 150 (151)
+++||+.++.. ..+.+.|.+||+|||||+|+|||++......++++|++.++++|+|++++.|.|++|++++|
T Consensus 121 ~~~lF~~i~~~--~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll 193 (344)
T 4a14_A 121 MAEAFKLIDEN--DLLDCLVHVSYLEVYKEEFRDLLEVGTASRDIQLREDERGNVVLCGVKEVDVEGLDEVLSLL 193 (344)
T ss_dssp HHHHHHHHHHC--TTSEEEEEEEEEEEETTEEEETTSSCCCGGGCEEEECTTSCEEEESCCCEECCSHHHHHHHH
T ss_pred HHHHHHhcccc--cceeeEEEEehhhhhHHHHHHHHHhccccccceeeeccCCCEEEEeeeeccccCHHHHHHHH
Confidence 99999999855 45689999999999999999999987667789999999999999999999999999998875
No 5
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=100.00 E-value=4.2e-42 Score=275.25 Aligned_cols=138 Identities=38% Similarity=0.652 Sum_probs=128.0
Q ss_pred CCeEEEeceEeccCCCCCCCCCCHHHHHHHHhHHHHHHhhcCCCeeEEeeccCCCCCceeeccCCCCCCcHHHHHHHHHH
Q psy12524 2 PPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYTMMGSQDNKGIIPRLCDSLFD 81 (151)
Q Consensus 2 ~~k~f~fD~vf~~~d~~~~~~~~q~~vy~~~~~~lv~~~~~G~~~~v~~yG~~~sGKt~t~~G~~~~~Gli~~~~~~lf~ 81 (151)
.+++|+||+|| +++++|++||+.++.|+|+++++|+|+||||||+|||||||||.|+..++||+||++++||+
T Consensus 54 ~~~~f~FD~Vf-------~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~lF~ 126 (350)
T 2vvg_A 54 VPRTFTFDAVY-------DQTSCNYGIFQASFKPLIDAVLEGFNSTIFAYGQTGAGKTWTMGGNKEEPGAIPNSFKHLFD 126 (350)
T ss_dssp --EEEECSEEE-------CTTCCHHHHHHHTTHHHHHHHHTTCCEEEEEECSTTSSHHHHHTBCSSSBCHHHHHHHHHHH
T ss_pred CceEeeCCEEE-------CCCcchhHHHHHHHHHHHHHHhCCCceeEEeecCCCCCCCEEeecCCccCchHHHHHHHHHH
Confidence 36899999999 88999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCceEEEEEEEEEEECCeeeecCCCCCCCceeeEEecCCCCeEEcCceEEEcCCHHHHhcCC
Q psy12524 82 LIAKQESSELTYKVEVSYMEIYNEKVHDLLDPKANKQSLKVREHNVLGPYVDGLSQLAVTSFQARANPT 150 (151)
Q Consensus 82 ~~~~~~~~~~~~~v~~S~~eiy~e~v~DLL~~~~~~~~l~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll 150 (151)
.++.. ..++.|.|.+||+|||||+|+|||++ +.+++++|++.+|++|+|++++.|.|++|+.++|
T Consensus 127 ~i~~~-~~~~~~~v~vS~~EIYnE~i~DLL~~---~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll 191 (350)
T 2vvg_A 127 AINSS-SSNQNFLVIGSYLELYNEEIRDLIKN---NTKLPLKEDKTRGIYVDGLSMHRVTTAAELSALM 191 (350)
T ss_dssp HHHTC-CTTEEEEEEEEEEEEETTEEEETTTT---EEEECEEEETTTEEEETTCCCEEESSHHHHHHHH
T ss_pred HHHhh-ccCCcEEEEEEEEEEeCCEEEEcccC---CcCceeeEcCCCCEEecCCEEEEcCCHHHHHHHH
Confidence 98743 45678999999999999999999983 4589999999999999999999999999998764
No 6
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=100.00 E-value=4.6e-42 Score=276.64 Aligned_cols=148 Identities=55% Similarity=0.991 Sum_probs=132.2
Q ss_pred CCeEEEeceEeccCCC-CCCCCCCHHHHHHHHhHHHHHHhhcCCCeeEEeeccCCCCCceeeccCC--CCCCcHHHHHHH
Q psy12524 2 PPKTFAFDHCFYSLDP-NLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYTMMGSQ--DNKGIIPRLCDS 78 (151)
Q Consensus 2 ~~k~f~fD~vf~~~d~-~~~~~~~q~~vy~~~~~~lv~~~~~G~~~~v~~yG~~~sGKt~t~~G~~--~~~Gli~~~~~~ 78 (151)
.+++|+||+|||+.+. .....++|++||+.++.|+|+++++|+|+||||||+|||||||||+|+. .++||+||++++
T Consensus 46 ~~~~f~FD~vf~~~~~~~~~~~asQ~~Vy~~~~~plv~~~l~G~N~tifAYGqTGSGKTyTm~G~~~~~~~Giipr~~~~ 125 (366)
T 2zfi_A 46 TPKSFSFDYSYWSHTSPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIPQLCED 125 (366)
T ss_dssp CCEEEECSEEEECSSCTTSSSCCCHHHHHHHTHHHHHHHHHTTCCEEEEEECSTTSSHHHHHTBCSGGGCBCHHHHHHHH
T ss_pred CceEEecceEeecCccccccccCcHHHHHHHHHHHHHHHHhcCCeeEEEEeCCCCCCCceEeeCCCccCCCccHHHHHHH
Confidence 3689999999976532 1123389999999999999999999999999999999999999999985 478999999999
Q ss_pred HHHHHHhhcCCCceEEEEEEEEEEECCeeeecCCCCCCCceeeEEecCCCCeEEcCceEEEcCCHHHHhcCC
Q psy12524 79 LFDLIAKQESSELTYKVEVSYMEIYNEKVHDLLDPKANKQSLKVREHNVLGPYVDGLSQLAVTSFQARANPT 150 (151)
Q Consensus 79 lf~~~~~~~~~~~~~~v~~S~~eiy~e~v~DLL~~~~~~~~l~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll 150 (151)
||+.++.....++.|.|++||+|||||+|+|||++.. +..|+++|++.+|++|+||+++.|.|.+|+.++|
T Consensus 126 lF~~i~~~~~~~~~~~v~vS~~EIYnE~v~DLL~~~~-~~~l~ire~~~~g~~v~gl~~~~V~s~~e~~~ll 196 (366)
T 2zfi_A 126 LFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKN-KGNLRVREHPLLGPYVEDLSKLAVTSYNDIQDLM 196 (366)
T ss_dssp HHHHHHTCCCTTEEEEEEEEEEEEETTEEEETTCTTT-CSCBCEEEETTTEEEETTCCCEECCSHHHHHHHH
T ss_pred HHHHHhhcccCCeeEEEEEEEEEeeCCeEEEcccccc-CCCceEEEcCCCCEEEeCCEEEEECCHHHHHHHH
Confidence 9999987766678999999999999999999999763 4579999999999999999999999999998765
No 7
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=100.00 E-value=4.8e-42 Score=277.67 Aligned_cols=139 Identities=35% Similarity=0.568 Sum_probs=129.3
Q ss_pred CeEEEeceEeccCCCCCCCCCCHHHHHHHHhHHHHHHhhcCCCeeEEeeccCCCCCceeeccCCCCCCcHHHHHHHHHHH
Q psy12524 3 PKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYTMMGSQDNKGIIPRLCDSLFDL 82 (151)
Q Consensus 3 ~k~f~fD~vf~~~d~~~~~~~~q~~vy~~~~~~lv~~~~~G~~~~v~~yG~~~sGKt~t~~G~~~~~Gli~~~~~~lf~~ 82 (151)
.++|+||+|| +++++|++||+.++.|+|+.+++|+|+||||||+|||||||||+|+..++||+||++++||+.
T Consensus 64 ~~~f~FD~Vf-------~~~~tQ~~Vy~~~~~plv~~~l~G~N~tifAYGqTGSGKTyTM~G~~~~~Giipra~~~lF~~ 136 (388)
T 3bfn_A 64 TLKYQFDAFY-------GERSTQQDIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTHTMLGSPEQPGVIPRALMDLLQL 136 (388)
T ss_dssp EEEEECSEEE-------CTTCCHHHHHHHHTGGGHHHHTTTCCEEEEEESCTTSSHHHHHTBCSSSBCHHHHHHHHHHHH
T ss_pred eeEEEcceEe-------cCCCCHhHHHHHHHHHHHHHhhcCceeeEeeecCCCCCCCeEeecCccccchhHHHHHHHHHH
Confidence 5789999999 889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhc--CCCceEEEEEEEEEEECCeeeecCCCCCCCceeeEEecCCCCeEEcCceEEEcCCHHHHhcCC
Q psy12524 83 IAKQE--SSELTYKVEVSYMEIYNEKVHDLLDPKANKQSLKVREHNVLGPYVDGLSQLAVTSFQARANPT 150 (151)
Q Consensus 83 ~~~~~--~~~~~~~v~~S~~eiy~e~v~DLL~~~~~~~~l~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll 150 (151)
++... ...+.|.|.+||+|||||+|+|||++.. ..|+|+||+.++++|+||+++.|.|++|+.++|
T Consensus 137 i~~~~~~~~~~~~~V~vS~lEIYnE~i~DLL~~~~--~~l~ired~~~~v~v~gl~~~~V~s~~e~~~ll 204 (388)
T 3bfn_A 137 TREEGAEGRPWALSVTMSYLEIYQEKVLDLLDPAS--GDLVIREDCRGNILIPGLSQKPISSFADFERHF 204 (388)
T ss_dssp HHHHTSTTCSEEEEEEEEEEEEETTEEEESSSCSS--CBCCCEECTTSCEECTTCCCEECCSHHHHHHHH
T ss_pred HHHhhccCCCceEEEEEEEEEEECCeeeehhccCC--CCceEEEcCCCCEEeccceEEEeCCHHHHHHHH
Confidence 87643 3467899999999999999999999753 479999999999999999999999999998764
No 8
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=100.00 E-value=1.3e-41 Score=270.27 Aligned_cols=138 Identities=40% Similarity=0.681 Sum_probs=127.3
Q ss_pred CeEEEeceEeccCCCCCCCCCCHHHHHHHHhHHHHHHhhcCCCeeEEeeccCCCCCceeeccCCC---CCCcHHHHHHHH
Q psy12524 3 PKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYTMMGSQD---NKGIIPRLCDSL 79 (151)
Q Consensus 3 ~k~f~fD~vf~~~d~~~~~~~~q~~vy~~~~~~lv~~~~~G~~~~v~~yG~~~sGKt~t~~G~~~---~~Gli~~~~~~l 79 (151)
.++|+||+|| +++++|++||+.++.|+|+++++|+|+||||||+|||||||||.|+.. .+||+||++++|
T Consensus 43 ~~~f~FD~Vf-------~~~~sQ~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~Giipr~~~~l 115 (325)
T 1bg2_A 43 SKPYAFDRVF-------QSSTSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPEGMGIIPRIVQDI 115 (325)
T ss_dssp TEEEECSEEE-------CTTCCHHHHHHHHTHHHHHHHHTTCCEEEEEECSTTSSHHHHHTBSTTCTTTBCHHHHHHHHH
T ss_pred CEEEECCeEe-------CCCCCHHHHHHHHhhhhHHHHhCCCeEEEEEECCCCCCCceEecccCCCcccCccHHHHHHHH
Confidence 5789999999 889999999999999999999999999999999999999999999754 459999999999
Q ss_pred HHHHHhhcCCCceEEEEEEEEEEECCeeeecCCCCCCCceeeEEecCCCCeEEcCceEEEcCCHHHHhcCC
Q psy12524 80 FDLIAKQESSELTYKVEVSYMEIYNEKVHDLLDPKANKQSLKVREHNVLGPYVDGLSQLAVTSFQARANPT 150 (151)
Q Consensus 80 f~~~~~~~~~~~~~~v~~S~~eiy~e~v~DLL~~~~~~~~l~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll 150 (151)
|+.+... ..++.+.|++||+|||||+|+|||++. +..++++|++.++++|+|++++.|.|++|+.++|
T Consensus 116 F~~i~~~-~~~~~~~v~vS~~EIYnE~v~DLL~~~--~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll 183 (325)
T 1bg2_A 116 FNYIYSM-DENLEFHIKVSYFEIYLDKIRDLLDVS--KTNLSVHEDKNRVPYVKGCTERFVCSPDEVMDTI 183 (325)
T ss_dssp HHHHHHH-CSSEEEEEEEEEEEEETTEEEESSCTT--CCSBCEEECTTSCEEETTCCCEEECSHHHHHHHH
T ss_pred HHHHHhc-cCCceEEEEEEEEEEecCeeeecccCC--CCCceEEECCCCCEEecCceEEeCCCHHHHHHHH
Confidence 9998755 346789999999999999999999875 4579999999999999999999999999998765
No 9
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=100.00 E-value=1.2e-41 Score=274.36 Aligned_cols=139 Identities=39% Similarity=0.672 Sum_probs=127.9
Q ss_pred CCeEEEeceEeccCCCCCCCCCCHHHHHHHHhHHHHHHhhcCCCeeEEeeccCCCCCceeeccCCC---CCCcHHHHHHH
Q psy12524 2 PPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYTMMGSQD---NKGIIPRLCDS 78 (151)
Q Consensus 2 ~~k~f~fD~vf~~~d~~~~~~~~q~~vy~~~~~~lv~~~~~G~~~~v~~yG~~~sGKt~t~~G~~~---~~Gli~~~~~~ 78 (151)
.+++|+||+|| +++++|++||+.++.|+|+++++|+|+||||||+|||||||||.|... .+||+||++++
T Consensus 66 ~~~~F~FD~Vf-------~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~Giipr~~~~ 138 (372)
T 3b6u_A 66 MPKTFTFDAVY-------DWNAKQFELYDETFRPLVDSVLQGFNGTIFAYGQTGTGKTYTMEGIRGDPEKRGVIPNSFDH 138 (372)
T ss_dssp CCEEEECSEEE-------CTTCCHHHHHHHTHHHHHHHHHTTCCEEEEEEESTTSSHHHHHTBCTTSGGGBCHHHHHHHH
T ss_pred CceEEEcCeEe-------CCcCchHHHHHHHHHHHHHHHhCCCeeeEEeecCCCCCCCEeEecCCCCcccCCcHHHHHHH
Confidence 46899999999 889999999999999999999999999999999999999999999653 57999999999
Q ss_pred HHHHHHhhcCCCceEEEEEEEEEEECCeeeecCCCCCCCceeeEEecCCCCeEEcCceEEEcCCHHHHhcCC
Q psy12524 79 LFDLIAKQESSELTYKVEVSYMEIYNEKVHDLLDPKANKQSLKVREHNVLGPYVDGLSQLAVTSFQARANPT 150 (151)
Q Consensus 79 lf~~~~~~~~~~~~~~v~~S~~eiy~e~v~DLL~~~~~~~~l~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll 150 (151)
||+.++. ..++.|.|++||+|||||+|+|||++.. ...++++|++.+|++|+||+++.|.|++|+.++|
T Consensus 139 lF~~i~~--~~~~~~~v~vS~~EIYnE~i~DLL~~~~-~~~l~i~e~~~~~v~v~gl~~~~v~s~~e~~~ll 207 (372)
T 3b6u_A 139 IFTHISR--SQNQQYLVRASYLEIYQEEIRDLLSKDQ-TKRLELKERPDTGVYVKDLSSFVTKSVKEIEHVM 207 (372)
T ss_dssp HHHHHHT--CSSCEEEEEEEEEEEETTEEEETTSSCT-TCCBCEEEETTTEEEETTCCCEECCSHHHHHHHH
T ss_pred HHHHhhh--ccCCceEEEEEEEEEeCCEEEECCCCCC-CCCceEEECCCCcEecCCCEEEEecCHHHHHHHH
Confidence 9999875 3467899999999999999999998753 4579999999999999999999999999998765
No 10
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=100.00 E-value=2e-41 Score=271.92 Aligned_cols=139 Identities=42% Similarity=0.748 Sum_probs=127.8
Q ss_pred CCeEEEeceEeccCCCCCCCCCCHHHHHHHHhHHHHHHhhcCCCeeEEeeccCCCCCceeeccCC----CCCCcHHHHHH
Q psy12524 2 PPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYTMMGSQ----DNKGIIPRLCD 77 (151)
Q Consensus 2 ~~k~f~fD~vf~~~d~~~~~~~~q~~vy~~~~~~lv~~~~~G~~~~v~~yG~~~sGKt~t~~G~~----~~~Gli~~~~~ 77 (151)
..++|+||+|| +++++|++||+.++.|+|+.+++|+|+||||||+|||||||||+|.. ..+||+||+++
T Consensus 45 ~~~~f~FD~Vf-------~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~~Giipr~~~ 117 (355)
T 1goj_A 45 AQGSFTFDRVF-------DMSCKQSDIFDFSIKPTVDDILNGYNGTVFAYGQTGAGKSYTMMGTSIDDPDGRGVIPRIVE 117 (355)
T ss_dssp CCEEEECSEEE-------CTTCCHHHHHHHHTHHHHHHHTTTCCEEEEEECSTTSSHHHHHTBSCTTSTTTBCHHHHHHH
T ss_pred CccEEeeCeEE-------CCCCccHHHHHHHHHHHHHHHhCCCcceEEEECCCCCCcceEeecCCCCCcccCCchHHHHH
Confidence 46789999999 88999999999999999999999999999999999999999999963 56899999999
Q ss_pred HHHHHHHhhcCCCceEEEEEEEEEEECCeeeecCCCCCCCceeeEEecCCCCeEEcCceEEEcCCHHHHhcCC
Q psy12524 78 SLFDLIAKQESSELTYKVEVSYMEIYNEKVHDLLDPKANKQSLKVREHNVLGPYVDGLSQLAVTSFQARANPT 150 (151)
Q Consensus 78 ~lf~~~~~~~~~~~~~~v~~S~~eiy~e~v~DLL~~~~~~~~l~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll 150 (151)
+||+.+... ..++.+.|.+||+|||||+|+|||++.. ..++++|++.+|++|+|++++.|.|++|+.++|
T Consensus 118 ~lF~~i~~~-~~~~~~~v~vS~~EIYnE~i~DLL~~~~--~~l~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll 187 (355)
T 1goj_A 118 QIFTSILSS-AANIEYTVRVSYMEIYMERIRDLLAPQN--DNLPVHEEKNRGVYVKGLLEIYVSSVQEVYEVM 187 (355)
T ss_dssp HHHHHHHTS-CTTEEEEEEEEEEEEETTEEEETTSTTC--CSCCEEEETTTEEEETTCCCEECCSHHHHHHHH
T ss_pred HHHHHHHhc-ccCceEEEEEEEEEEECCEEEEcccCcc--CCceeEEcCCCCEeecCCEEEeCCCHHHHHHHH
Confidence 999998754 4567899999999999999999999753 479999999999999999999999999998764
No 11
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=100.00 E-value=2.2e-41 Score=271.75 Aligned_cols=138 Identities=33% Similarity=0.521 Sum_probs=128.6
Q ss_pred CCeEEEeceEeccCCCCCCCCCCHHHHHHHHhHHHHHHhhcCCCeeEEeeccCCCCCceeeccCCCCCCcHHHHHHHHHH
Q psy12524 2 PPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYTMMGSQDNKGIIPRLCDSLFD 81 (151)
Q Consensus 2 ~~k~f~fD~vf~~~d~~~~~~~~q~~vy~~~~~~lv~~~~~G~~~~v~~yG~~~sGKt~t~~G~~~~~Gli~~~~~~lf~ 81 (151)
++++|+||+|| +++++|++||+.++.|+|+++++|+|+||||||+|||||||||+|+..++||+||++++||+
T Consensus 70 ~~~~F~FD~vf-------~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~lf~ 142 (355)
T 3lre_A 70 KDLKFVFDAVF-------DETSTQSEVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTMLGSADEPGVMYLTMLHLYK 142 (355)
T ss_dssp CCEEEECSEEE-------CTTCCHHHHHHTTHHHHHHHHTTTCCEEEEEECCTTSSHHHHHTBCSSSBCHHHHHHHHHHH
T ss_pred CCceEEeceEE-------CCCCChHHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCceeeeccCCCCCCeeehhhhHHHH
Confidence 35689999999 89999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCceEEEEEEEEEEECCeeeecCCCCCCCceeeEEecCCCCeEEcCceEEEcCCHHHHhcCC
Q psy12524 82 LIAKQESSELTYKVEVSYMEIYNEKVHDLLDPKANKQSLKVREHNVLGPYVDGLSQLAVTSFQARANPT 150 (151)
Q Consensus 82 ~~~~~~~~~~~~~v~~S~~eiy~e~v~DLL~~~~~~~~l~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll 150 (151)
.++... ....+.+.+||+|||||+|+|||++. .+|+++|++.+|++|+||+++.|.|++|+.++|
T Consensus 143 ~i~~~~-~~~~~~v~vS~~EIYnE~i~DLL~~~---~~l~ire~~~~~~~v~gl~~~~v~s~~e~~~ll 207 (355)
T 3lre_A 143 CMDEIK-EEKICSTAVSYLEVYNEQIRDLLVNS---GPLAVREDTQKGVVVHGLTLHQPKSSEEILHLL 207 (355)
T ss_dssp HHHHTT-TTEEEEEEEEEEEEETTEEEESSSCC---CCBEEEECTTSCEEEETCCCBCCCSHHHHHHHH
T ss_pred hhhhhc-cCceEEEEEEEEEEECCEEEECcCCC---CCceeEEcCCCCEEeeeeeEEecCCHHHHHHHH
Confidence 998654 34589999999999999999999854 479999999999999999999999999998765
No 12
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=100.00 E-value=2.5e-41 Score=272.36 Aligned_cols=140 Identities=29% Similarity=0.623 Sum_probs=129.2
Q ss_pred CCeEEEeceEeccCCCCCCCCCCHHHHHHHHhHHHHHHhhcCCCeeEEeeccCCCCCceeeccCCCCCCcHHHHHHHHHH
Q psy12524 2 PPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYTMMGSQDNKGIIPRLCDSLFD 81 (151)
Q Consensus 2 ~~k~f~fD~vf~~~d~~~~~~~~q~~vy~~~~~~lv~~~~~G~~~~v~~yG~~~sGKt~t~~G~~~~~Gli~~~~~~lf~ 81 (151)
+.++|+||+|| +++++|++||+. +.|+|+.+++|+|+||||||+|||||||||+|+..++||+||++++||+
T Consensus 45 ~~~~f~FD~Vf-------~~~~~Q~~Vy~~-~~~lv~~~l~G~n~tifAYGqTGSGKTyTM~G~~~~~Giipr~~~~lF~ 116 (369)
T 3cob_A 45 KAKQHMYDRVF-------DGNATQDDVFED-TKYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGADSNPGLTPRAMSELFR 116 (369)
T ss_dssp CEEEEECSEEE-------CTTCCHHHHHHT-TTHHHHHHHTTCEEEEEEEECTTSSHHHHHTBCSSSBCHHHHHHHHHHH
T ss_pred CceEEecCEEE-------CCCCCcceehhh-hhhhhHhhhcCCceEEEEECCCCCCCeEeecCCCCCCchhHHHHHHHHH
Confidence 35799999999 889999999999 6999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCceEEEEEEEEEEECCeeeecCCCCCC-CceeeEEecCCCCeEEcCceEEEcCCHHHHhcCC
Q psy12524 82 LIAKQESSELTYKVEVSYMEIYNEKVHDLLDPKAN-KQSLKVREHNVLGPYVDGLSQLAVTSFQARANPT 150 (151)
Q Consensus 82 ~~~~~~~~~~~~~v~~S~~eiy~e~v~DLL~~~~~-~~~l~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll 150 (151)
.++... ..+.|.|.+||+|||||+|+|||++... +..|++++++.++++|+|++++.|.|++|+.++|
T Consensus 117 ~i~~~~-~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll 185 (369)
T 3cob_A 117 IMKKDS-NKFSFSLKAYMVELYQDTLVDLLLPKQAKRLKLDIKKDSKGMVSVENVTVVSISTYEELKTII 185 (369)
T ss_dssp HHHHTT-TTEEEEEEEEEEEECSSCEEESSCCSSSCCCCCEEEECTTSCEEEETCCCEEECSHHHHHHHH
T ss_pred HHHhhc-cCceeEEEEEEEEEeCceeeecCCCcccCCcceEEEECCCCCEEccCCEEEEeCCHHHHHHHH
Confidence 998654 3478999999999999999999997543 4579999999999999999999999999998764
No 13
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=100.00 E-value=6.5e-41 Score=269.66 Aligned_cols=138 Identities=41% Similarity=0.652 Sum_probs=127.2
Q ss_pred CeEEEeceEeccCCCCCCCCCCHHHHHHHHhHHHHHHhhcCCCeeEEeeccCCCCCceeeccCCC---CCCcHHHHHHHH
Q psy12524 3 PKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYTMMGSQD---NKGIIPRLCDSL 79 (151)
Q Consensus 3 ~k~f~fD~vf~~~d~~~~~~~~q~~vy~~~~~~lv~~~~~G~~~~v~~yG~~~sGKt~t~~G~~~---~~Gli~~~~~~l 79 (151)
.++|+||+|| +++++|++||+.++.|+|+++++|+|+||||||+|||||||||.|... .+||+||++++|
T Consensus 50 ~~~f~FD~Vf-------~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~Giipr~~~~l 122 (365)
T 2y65_A 50 GKVYLFDKVF-------KPNASQEKVYNEAAKSIVTDVLAGYNGTIFAYGQTSSGKTHTMEGVIGDSVKQGIIPRIVNDI 122 (365)
T ss_dssp TEEEECSEEE-------CTTCCHHHHHHHHTHHHHHHHHTTCCEEEEEECSTTSSHHHHHTBSTTCTTTBCHHHHHHHHH
T ss_pred CEEEeCceEe-------cCCCCHHHHHHHhhhhHHHHHhCCCceEEEeecCCCCCCceEEecCCCCcccCChHHHHHHHH
Confidence 5789999999 889999999999999999999999999999999999999999999653 579999999999
Q ss_pred HHHHHhhcCCCceEEEEEEEEEEECCeeeecCCCCCCCceeeEEecCCCCeEEcCceEEEcCCHHHHhcCC
Q psy12524 80 FDLIAKQESSELTYKVEVSYMEIYNEKVHDLLDPKANKQSLKVREHNVLGPYVDGLSQLAVTSFQARANPT 150 (151)
Q Consensus 80 f~~~~~~~~~~~~~~v~~S~~eiy~e~v~DLL~~~~~~~~l~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll 150 (151)
|+.+... ..++.|.|.+||+|||||+|+|||++. +..++++|++.++++|+|++++.|.|++|+.++|
T Consensus 123 F~~i~~~-~~~~~~~v~vS~~EIYnE~i~DLL~~~--~~~l~i~e~~~~~~~v~gl~~~~V~s~~e~~~ll 190 (365)
T 2y65_A 123 FNHIYAM-EVNLEFHIKVSYYEIYMDKIRDLLDVS--KVNLSVHEDKNRVPYVKGATERFVSSPEDVFEVI 190 (365)
T ss_dssp HHHHHHC-CSCEEEEEEEEEEEEETTEEEETTCTT--CCSBCEEECSSSCEEETTCCCEEECSHHHHHHHH
T ss_pred HHHHHhc-cCCceEEEEEEEEEEECCeeeecccCC--cCCceEEECCCCCEEecCCEEEecCCHHHHHHHH
Confidence 9998754 356789999999999999999999875 4579999999999999999999999999998764
No 14
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=100.00 E-value=2.8e-41 Score=268.85 Aligned_cols=139 Identities=37% Similarity=0.629 Sum_probs=125.5
Q ss_pred CeEEEeceEeccCCCCCCCCCCHHHHHHHHhHHHHHHhhcCCCeeEEeeccCCCCCceeeccCCCCCCcHHHHHHHHHHH
Q psy12524 3 PKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYTMMGSQDNKGIIPRLCDSLFDL 82 (151)
Q Consensus 3 ~k~f~fD~vf~~~d~~~~~~~~q~~vy~~~~~~lv~~~~~G~~~~v~~yG~~~sGKt~t~~G~~~~~Gli~~~~~~lf~~ 82 (151)
+++|+||+|| +++++|++||+. +.|+|+.+++|+|+||||||+|||||||||+|+..++||+||++++||+.
T Consensus 47 ~~~f~FD~Vf-------~~~~~Q~~Vy~~-v~~lv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~lF~~ 118 (330)
T 2h58_A 47 PVSFELDKVF-------SPQASQQDVFQE-VQALVTSCIDGFNVCIFAYGQTGAGKTYTMEGTAENPGINQRALQLLFSE 118 (330)
T ss_dssp EEEEECSEEE-------CTTCCHHHHHTT-THHHHHHHHTTCCEEEEEESSTTSSHHHHHTBCSSSBCHHHHHHHHHHHH
T ss_pred eeEEecCeEe-------CCCCCcHhHHHH-HHHHHHHHhCCCEEEEEeECCCCCCCcEEEecCCCCCcHHHHHHHHHHHh
Confidence 5789999999 889999999998 48999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCceEEEEEEEEEEECCeeeecCCCCCC-CceeeEEecCCCCeEEcCceEEEcCCHHHHhcCC
Q psy12524 83 IAKQESSELTYKVEVSYMEIYNEKVHDLLDPKAN-KQSLKVREHNVLGPYVDGLSQLAVTSFQARANPT 150 (151)
Q Consensus 83 ~~~~~~~~~~~~v~~S~~eiy~e~v~DLL~~~~~-~~~l~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll 150 (151)
++.. ..++.+.|.+||+|||||+|+|||++.+. +..+++++++.++++|+||+++.|.|++|+.++|
T Consensus 119 i~~~-~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~l~i~~~~~~~~~~~v~gl~~~~v~s~~e~~~ll 186 (330)
T 2h58_A 119 VQEK-ASDWEYTITVSAAEIYNEVLRDLLGKEPQEKLEIRLCPDGSGQLYVPGLTEFQVQSVDDINKVF 186 (330)
T ss_dssp HHTS-CTTEEEEEEEEEEEEETTEEEETTSCSSCCCCCCEECTTSSCCEECTTCCCEEECSHHHHHHHH
T ss_pred hhcc-cCCceEEEEEEEEEEECCChhhcccccccccceEEEeecCCCCEecCCCEEEEeCCHHHHHHHH
Confidence 8754 35678999999999999999999987532 2345666788999999999999999999998764
No 15
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=100.00 E-value=5.8e-41 Score=273.51 Aligned_cols=140 Identities=35% Similarity=0.641 Sum_probs=129.4
Q ss_pred CeEEEeceEeccCCCCCCCCCCHHHHHHHHhHHHHHHhhcCCCeeEEeeccCCCCCceeeccCCCCCCcHHHHHHHHHHH
Q psy12524 3 PKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYTMMGSQDNKGIIPRLCDSLFDL 82 (151)
Q Consensus 3 ~k~f~fD~vf~~~d~~~~~~~~q~~vy~~~~~~lv~~~~~G~~~~v~~yG~~~sGKt~t~~G~~~~~Gli~~~~~~lf~~ 82 (151)
.+.|+||+|| +++++|++||+. +.|+|+++++|+|+||||||+|||||||||.|.+.++||+||++++||+.
T Consensus 105 ~~~F~FD~VF-------~~~~~Q~~Vf~~-v~plv~~~l~G~n~tifAYGqTGSGKTyTM~G~~~~~Giipr~~~~lF~~ 176 (412)
T 3u06_A 105 QQIFSFDQVF-------HPLSSQSDIFEM-VSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLLFDS 176 (412)
T ss_dssp CCEEECSEEE-------CTTCCHHHHHTT-THHHHHHHHTTCCEEEEEESSTTSSHHHHHTEETTEECHHHHHHHHHHHH
T ss_pred ceEEeeCeEc-------CCCCCHHHHHHH-HHHHHHHHHCCCceEEEEecCCCCCCeeEecCCCCCCccHHHHHHHHHHh
Confidence 4789999999 899999999985 57999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCceEEEEEEEEEEECCeeeecCCCCCCCceeeEEecCCCCeEEcCceEEEcCCHHHHhcCC
Q psy12524 83 IAKQESSELTYKVEVSYMEIYNEKVHDLLDPKANKQSLKVREHNVLGPYVDGLSQLAVTSFQARANPT 150 (151)
Q Consensus 83 ~~~~~~~~~~~~v~~S~~eiy~e~v~DLL~~~~~~~~l~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll 150 (151)
+......++.|.|.+||+|||||+|+|||++......+++.+++.++++|.|++++.|.|++|+.++|
T Consensus 177 i~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~i~~~~~~~~~~~v~gl~~~~v~s~~e~~~ll 244 (412)
T 3u06_A 177 IRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKNDIYVSNITEETVLDPNHLRHLM 244 (412)
T ss_dssp HHHHGGGTEEEEEEEEEEEEETTEEEETTCCSCCCCCEEECSSCTTSEEETTCCCEECCSHHHHHHHH
T ss_pred hhhhcccCceEEEEEEEEEEeCCeeEEcCCCCCCCceeeeeecCCCCEEEcceEEEEeCCHHHHHHHH
Confidence 98777677899999999999999999999876655567777889999999999999999999998764
No 16
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=100.00 E-value=1.6e-40 Score=268.19 Aligned_cols=138 Identities=33% Similarity=0.601 Sum_probs=125.0
Q ss_pred CCeEEEeceEeccCCCCCCCCCCHHHHHHHHhHHHHHHhhcCCCeeEEeeccCCCCCceeeccCCC-----------CCC
Q psy12524 2 PPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYTMMGSQD-----------NKG 70 (151)
Q Consensus 2 ~~k~f~fD~vf~~~d~~~~~~~~q~~vy~~~~~~lv~~~~~G~~~~v~~yG~~~sGKt~t~~G~~~-----------~~G 70 (151)
..++|+||+|| +++++|++||+.++.|+|+++++|+|+||||||+|||||||||+|+.. ++|
T Consensus 65 ~~~~F~FD~vf-------~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~~~~~~~~~G 137 (373)
T 2wbe_C 65 LTKKFTFDRSF-------GPESKQCDVYSVVVSPLIEEVLNGYNCTVFAYGQTGTGKTHTMVGNETAELKSSWEDDSDIG 137 (373)
T ss_dssp TCEEEECSEEE-------CTTCCHHHHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHTBSCSCCSSSCSSCTTTBC
T ss_pred CceEEeccEEe-------ccccchhHHHHHHHHHHHHHHhCCceEEEEeecCCCCCcceecccCccccccccccccCCCc
Confidence 46899999999 889999999999999999999999999999999999999999999753 679
Q ss_pred cHHHHHHHHHHHHHhhcCCCceEEEEEEEEEEECCeeeecCCCCCCCceeeEEecC--CCCeEEcCceEEEcCCHHHHhc
Q psy12524 71 IIPRLCDSLFDLIAKQESSELTYKVEVSYMEIYNEKVHDLLDPKANKQSLKVREHN--VLGPYVDGLSQLAVTSFQARAN 148 (151)
Q Consensus 71 li~~~~~~lf~~~~~~~~~~~~~~v~~S~~eiy~e~v~DLL~~~~~~~~l~i~e~~--~~g~~v~gl~~~~v~s~~e~~~ 148 (151)
|+||++++||+.++.. ++.|.|.+||+|||||+|+|||++.+ ...+++++++ .++++|+||+++.|.|.+|+++
T Consensus 138 iipr~~~~lF~~i~~~---~~~~~v~vS~~EIYnE~i~DLL~~~~-~~~l~i~~~~~~~g~v~v~gl~~~~V~s~~e~~~ 213 (373)
T 2wbe_C 138 IIPRALSHLFDELRMM---EVEYTMRISYLELYNEELCDLLSTDD-TTKIRIFDDSTKKGSVIIQGLEEIPVHSKDDVYK 213 (373)
T ss_dssp HHHHHHHHHHHHHHHC---CSCEEEEEEEEEEETTEEEESSCTTS-CSCCCEEECSSSSSCEEETTCCCEEESSHHHHHH
T ss_pred ChHHHHHHHHHHHHhc---CceEEEEEEEEEEeCCeEEECCCCCC-CCCceeEeccCCCCcEEecCceEEccCCHHHHHH
Confidence 9999999999998743 45899999999999999999999753 4578888884 5789999999999999999987
Q ss_pred CC
Q psy12524 149 PT 150 (151)
Q Consensus 149 ll 150 (151)
+|
T Consensus 214 ll 215 (373)
T 2wbe_C 214 LL 215 (373)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 17
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=100.00 E-value=5e-41 Score=271.63 Aligned_cols=138 Identities=36% Similarity=0.489 Sum_probs=123.4
Q ss_pred CeEEEeceEeccCCCCCCCCCCHHHHHHHHhHHHHHHhhcCCCeeEEeeccCCCCCceeeccCC------CCCCcHHHHH
Q psy12524 3 PKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYTMMGSQ------DNKGIIPRLC 76 (151)
Q Consensus 3 ~k~f~fD~vf~~~d~~~~~~~~q~~vy~~~~~~lv~~~~~G~~~~v~~yG~~~sGKt~t~~G~~------~~~Gli~~~~ 76 (151)
.++|+||+|| +++++|++||+.++.|+|+++++|+|+||||||+|||||||||.|+. ..+||+||++
T Consensus 100 ~~~F~FD~VF-------~~~~sQ~~Vy~~~~~plv~~~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~~~~Giipr~~ 172 (387)
T 2heh_A 100 NQAFCFDFAF-------DETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKAQNASKGIYAMAS 172 (387)
T ss_dssp EEEEECSEEE-------CTTCCHHHHHHHTTHHHHHHHHTTCEEEEEEESCTTSSHHHHHC-----------CCHHHHHH
T ss_pred ccEEeeeEEE-------ecCCCceeehhhhHHHHHHHHhcCCceEEEEecCCCCCCCeEeccCCCCCCcccCCceehhhH
Confidence 3689999999 88999999999999999999999999999999999999999999963 4689999999
Q ss_pred HHHHHHHHhhcCCCceEEEEEEEEEEECCeeeecCCCCCCCceeeEEecCCCCeEEcCceEEEcCCHHHHhcCC
Q psy12524 77 DSLFDLIAKQESSELTYKVEVSYMEIYNEKVHDLLDPKANKQSLKVREHNVLGPYVDGLSQLAVTSFQARANPT 150 (151)
Q Consensus 77 ~~lf~~~~~~~~~~~~~~v~~S~~eiy~e~v~DLL~~~~~~~~l~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll 150 (151)
++||..++.....++.+.|.+||+|||||+|+|||++. .+++++||+.++++|.||+++.|.|++|+.++|
T Consensus 173 ~~lF~~~~~~~~~~~~~~V~vS~~EIYnE~v~DLL~~~---~~l~i~ed~~~~v~v~gl~~~~V~s~~e~~~ll 243 (387)
T 2heh_A 173 RDVFLLKNQPCYRKLGLEVYVTFFEIYNGKLFDLLNKK---AKLRVLEDGKQQVQVVGLQEHLVNSADDVIKMI 243 (387)
T ss_dssp HHHHHHHTSHHHHTTTCEEEEEEEEEETTEEEETTTTT---EECEEEECTTCCEEEETCCCEEESSHHHHHHHH
T ss_pred HHHHHHhhcccccCceEEEEEEEEEecCCeEEECCCCC---ccceEEEcCCCCEEecCCEEEEeCCHHHHHHHH
Confidence 99999887554445689999999999999999999853 579999999999999999999999999998765
No 18
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=100.00 E-value=1.2e-40 Score=267.86 Aligned_cols=138 Identities=36% Similarity=0.623 Sum_probs=125.1
Q ss_pred CeEEEeceEeccCCCCCCCCCCHHHHHHHHhHHHHHHhhcCCCeeEEeeccCCCCCceeeccCCC-----------CCCc
Q psy12524 3 PKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYTMMGSQD-----------NKGI 71 (151)
Q Consensus 3 ~k~f~fD~vf~~~d~~~~~~~~q~~vy~~~~~~lv~~~~~G~~~~v~~yG~~~sGKt~t~~G~~~-----------~~Gl 71 (151)
.++|+||+|| +++++|++||+.++.|+|+++++|+|+||||||+|||||||||+|... .+||
T Consensus 54 ~~~f~FD~Vf-------~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~~~~~~~~~Gi 126 (359)
T 1x88_A 54 RKTYTFDMVF-------GASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGI 126 (359)
T ss_dssp EEEEECSEEE-------CTTCCHHHHHHHHHHHHHHHHHTTCEEEEEEEECTTSSHHHHHTBCCCGGGCSCGGGCTTBCH
T ss_pred ceEEeceEEE-------eccCchhHHHHHHHHHhHHHHhCCCceEEEEeCCCCCCCceEEeccCCccccccccccccCCc
Confidence 4789999999 889999999999999999999999999999999999999999999753 3699
Q ss_pred HHHHHHHHHHHHHhhcCCCceEEEEEEEEEEECCeeeecCCCCCC-CceeeEEecCC--CCeEEcCceEEEcCCHHHHhc
Q psy12524 72 IPRLCDSLFDLIAKQESSELTYKVEVSYMEIYNEKVHDLLDPKAN-KQSLKVREHNV--LGPYVDGLSQLAVTSFQARAN 148 (151)
Q Consensus 72 i~~~~~~lf~~~~~~~~~~~~~~v~~S~~eiy~e~v~DLL~~~~~-~~~l~i~e~~~--~g~~v~gl~~~~v~s~~e~~~ 148 (151)
+||++++||+.+.. .++.|.|++||+|||||+|+|||++... ...+++++++. +|++|+||+++.|.|++|+++
T Consensus 127 ipr~~~~lF~~i~~---~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~~l~i~~~~~~~~~v~v~gl~~~~v~s~~e~~~ 203 (359)
T 1x88_A 127 IPRTLHQIFEKLTD---NGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGVIIKGLEEITVHNKDEVYQ 203 (359)
T ss_dssp HHHHHHHHHHHTSS---SSEEEEEEEEEEEEETTEEEETTCTTSCTTCCBEEEEETTEEEEEEEETCCCEEECSGGGHHH
T ss_pred hHHHHHHHHHHHhc---cCceEEEEEEEEEEeCceeeehhcccccccccceEEeccCCCCCEEEcCCEEEEcCCHHHHHH
Confidence 99999999998753 4678999999999999999999997643 35799999984 789999999999999999987
Q ss_pred CC
Q psy12524 149 PT 150 (151)
Q Consensus 149 ll 150 (151)
+|
T Consensus 204 ll 205 (359)
T 1x88_A 204 IL 205 (359)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 19
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=100.00 E-value=1.8e-40 Score=267.87 Aligned_cols=140 Identities=34% Similarity=0.580 Sum_probs=123.4
Q ss_pred CeEEEeceEeccCCCCCCCCCCHHHHHHHHhHHHHHHhhcCCCeeEEeeccCCCCCceeeccCCC----CCCcHHHHHHH
Q psy12524 3 PKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYTMMGSQD----NKGIIPRLCDS 78 (151)
Q Consensus 3 ~k~f~fD~vf~~~d~~~~~~~~q~~vy~~~~~~lv~~~~~G~~~~v~~yG~~~sGKt~t~~G~~~----~~Gli~~~~~~ 78 (151)
.++|+||+|| +++++|++||+.+ .|+|+.+++|+|+||||||+|||||||||.|... .+||+||++++
T Consensus 82 ~~~F~FD~Vf-------~~~~~Q~~Vy~~v-~~lv~~~l~G~N~tifAYGqTGSGKTyTM~G~~~~~~~~~Giipr~~~~ 153 (376)
T 2rep_A 82 RHDFSFDRVF-------PPGSGQDEVFEEI-AMLVQSALDGYPVCIFAYGQTGSGKTFTMEGGPGGDPQLEGLIPRALRH 153 (376)
T ss_dssp -CEEECSEEE-------CTTCCHHHHHHHH-HHHHHGGGGTCCEEEEEECSTTSSHHHHHTBCSSCCGGGBCHHHHHHHH
T ss_pred ceeeeecEEc-------CCcccchhhhhhH-HHHHHHhcCCCceEEEEeCCCCCCCceEeecCCCCCcccCCcHHHHHHH
Confidence 3689999999 8899999999985 6899999999999999999999999999999753 68999999999
Q ss_pred HHHHHHhhcCCCceEEEEEEEEEEECCeeeecCCCCC---CCceeeEEec--CCCCeEEcCceEEEcCCHHHHhcCC
Q psy12524 79 LFDLIAKQESSELTYKVEVSYMEIYNEKVHDLLDPKA---NKQSLKVREH--NVLGPYVDGLSQLAVTSFQARANPT 150 (151)
Q Consensus 79 lf~~~~~~~~~~~~~~v~~S~~eiy~e~v~DLL~~~~---~~~~l~i~e~--~~~g~~v~gl~~~~v~s~~e~~~ll 150 (151)
||+.++.....++.|.|.+||+|||||+|+|||++.. ....++++++ +.++++|.|++++.|.|++|+.++|
T Consensus 154 lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~~~~l~ir~~~~~~~~~~v~gl~~~~V~s~~e~~~ll 230 (376)
T 2rep_A 154 LFSVAQELSGQGWTYSFVASYVEIYNETVRDLLATGTRKGQGGECEIRRAGPGSEELTVTNARYVPVSCEKEVDALL 230 (376)
T ss_dssp HHHHHHHGGGGTEEEEEEEEEEEEETTEEEETTCCC--------CCEEEC---CCCEEETTCCCEEECSHHHHHHHH
T ss_pred HHHHHHHhhcCCeEEEEEEEEEEEECCEeeEccccccccccCCCceEEeccCCCCCEEECCcEEEEeCCHHHHHHHH
Confidence 9999987766778999999999999999999998752 2346889998 6789999999999999999998765
No 20
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=100.00 E-value=8.8e-41 Score=271.76 Aligned_cols=138 Identities=37% Similarity=0.509 Sum_probs=126.4
Q ss_pred CeEEEeceEeccCCCCCCCCCCHHHHHHHHhHHHHHHhhcCCCeeEEeeccCCCCCceeeccCC------CCCCcHHHHH
Q psy12524 3 PKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYTMMGSQ------DNKGIIPRLC 76 (151)
Q Consensus 3 ~k~f~fD~vf~~~d~~~~~~~~q~~vy~~~~~~lv~~~~~G~~~~v~~yG~~~sGKt~t~~G~~------~~~Gli~~~~ 76 (151)
.++|+||+|| +++++|++||+.++.|+|+++++|+|+||||||+|||||||||.|+. ..+||+|+++
T Consensus 120 ~~~F~FD~VF-------~~~~tQ~~Vy~~~~~plV~~~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~~~~Giipra~ 192 (410)
T 1v8k_A 120 NQAFCFDFAF-------DETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQNASKGIYAMAS 192 (410)
T ss_dssp EEEEECSEEE-------CTTCCHHHHHHHTTHHHHHHHHTTCEEEEEEEESTTSSHHHHHHCBC----CBGGGSHHHHHH
T ss_pred ceEEeeeEEE-------ecCCChhhhhHHHHHHHHHHHhcCCceeEEeecCCCCCCCeEeecCCCCCCccccCcchhhhH
Confidence 3689999999 88999999999999999999999999999999999999999999963 3689999999
Q ss_pred HHHHHHHHhhcCCCceEEEEEEEEEEECCeeeecCCCCCCCceeeEEecCCCCeEEcCceEEEcCCHHHHhcCC
Q psy12524 77 DSLFDLIAKQESSELTYKVEVSYMEIYNEKVHDLLDPKANKQSLKVREHNVLGPYVDGLSQLAVTSFQARANPT 150 (151)
Q Consensus 77 ~~lf~~~~~~~~~~~~~~v~~S~~eiy~e~v~DLL~~~~~~~~l~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll 150 (151)
++||..++.....++.+.|.+||+|||||+|+|||++ +..|+++||+.++++|.||+++.|.|++|+.++|
T Consensus 193 ~~lF~~~~~~~~~~~~~~V~vS~lEIYnE~i~DLL~~---~~~l~i~ed~~~~v~V~gl~e~~V~s~~e~~~ll 263 (410)
T 1v8k_A 193 RDVFLLKNQPRYRNLNLEVYVTFFEIYNGKVFDLLNK---KAKLRVLEDSRQQVQVVGLQEYLVTCADDVIKMI 263 (410)
T ss_dssp HHHHHHHTSHHHHTTCCEEEEEEEEEETTEEEETTTT---TEEEEEEECSSCCEEEETCCCEEESSHHHHHHHH
T ss_pred HHHHHHHhhhcccCccEEEEEEEEEeeCCEEEECCCC---CCCceEEECCCCCeEecCCEEEEeCCHHHHHHHH
Confidence 9999988755444668999999999999999999985 3579999999999999999999999999998765
No 21
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=100.00 E-value=4.3e-40 Score=263.52 Aligned_cols=139 Identities=32% Similarity=0.586 Sum_probs=121.8
Q ss_pred CCeEEEeceEeccCCCCCCCCCCHHHHHHHHhHHHHHHhhcCCCeeEEeeccCCCCCceeeccCCCCCCcHHHHHHHHHH
Q psy12524 2 PPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYTMMGSQDNKGIIPRLCDSLFD 81 (151)
Q Consensus 2 ~~k~f~fD~vf~~~d~~~~~~~~q~~vy~~~~~~lv~~~~~G~~~~v~~yG~~~sGKt~t~~G~~~~~Gli~~~~~~lf~ 81 (151)
+.++|+||+|| +++++|++||+.+ .|+|+++++|+|+||||||+|||||||||+|. ++||+||++++||+
T Consensus 50 ~~~~f~FD~Vf-------~~~~~Q~~Vy~~v-~~lv~~~l~G~n~tifAYGqTGSGKTyTM~G~--~~Giipr~~~~lF~ 119 (347)
T 1f9v_A 50 QVHEFKFDKIF-------DQQDTNVDVFKEV-GQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNP--GDGIIPSTISHIFN 119 (347)
T ss_dssp CEEEEEESEEE-------CTTCCHHHHHHHH-HHHHGGGGGTCCEEEEEECCTTSSHHHHHHST--TTSHHHHHHHHHHH
T ss_pred CceEEeeCEEE-------CCCCCHHHHHHHH-HHHHHHhcCCceeEEEEECCCCCCCcEeccCC--CCCchHHHHHHHHH
Confidence 35789999999 8899999999985 79999999999999999999999999999995 57999999999999
Q ss_pred HHHhhcCCCceEEEEEEEEEEECCeeeecCCCCCC-------CceeeEEecC-CCCeEEcCceEEEcCCHHHHhcCC
Q psy12524 82 LIAKQESSELTYKVEVSYMEIYNEKVHDLLDPKAN-------KQSLKVREHN-VLGPYVDGLSQLAVTSFQARANPT 150 (151)
Q Consensus 82 ~~~~~~~~~~~~~v~~S~~eiy~e~v~DLL~~~~~-------~~~l~i~e~~-~~g~~v~gl~~~~v~s~~e~~~ll 150 (151)
.++.....++.|.|.+||+|||||+|+|||++... ..++.+++++ .++++|.|++++.|.|.+|+.++|
T Consensus 120 ~i~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~l~~~~v~s~~e~~~ll 196 (347)
T 1f9v_A 120 WINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQETKTTTITNVTSCKLESEEMVEIIL 196 (347)
T ss_dssp HHHHHGGGTCEEEEEEEEEEEETTEEEETTC-------------CCCEEEETTTTEEEETTCCCEECSSGGGHHHHH
T ss_pred HHHhhhhcCCceEEEEEEEEEECCeeeeccCCccccccccccCCceeEEEecCCCceEecCCEEEEcCCHHHHHHHH
Confidence 99877667789999999999999999999987643 2357888765 578999999999999999998764
No 22
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=100.00 E-value=8.2e-40 Score=262.13 Aligned_cols=138 Identities=33% Similarity=0.661 Sum_probs=121.6
Q ss_pred CeEEEeceEeccCCCCCCCCCCHHHHHHHHhHHHHHHhhcCCCeeEEeeccCCCCCceeeccCCCCCCcHHHHHHHHHHH
Q psy12524 3 PKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYTMMGSQDNKGIIPRLCDSLFDL 82 (151)
Q Consensus 3 ~k~f~fD~vf~~~d~~~~~~~~q~~vy~~~~~~lv~~~~~G~~~~v~~yG~~~sGKt~t~~G~~~~~Gli~~~~~~lf~~ 82 (151)
+++|+||+|| +++++|++||+.+ .|+|+++++|+|+||||||+|||||||||+|+ ++||+||++++||+.
T Consensus 52 ~~~f~FD~Vf-------~~~~~Q~~vf~~v-~~lv~~~l~G~n~tifAYGqTGSGKTyTm~g~--~~Giipr~~~~lF~~ 121 (349)
T 3t0q_A 52 SYNFQFDMIF-------EPSHTNKEIFEEI-RQLVQSSLDGYNVCIFAYGQTGSGKTYTMLNA--GDGMIPMTLSHIFKW 121 (349)
T ss_dssp EEEEEESEEE-------CTTCCHHHHHHHH-HHHHHGGGTTCEEEEEEECSTTSSHHHHHHST--TTSHHHHHHHHHHHH
T ss_pred ceeeecCEEE-------CCCccHHHHHHHH-HHHHHHHHCCcceeEEEeCCCCCCCceEeCCC--CCchhhHHHHHHHHH
Confidence 5789999999 8899999999985 79999999999999999999999999999996 469999999999999
Q ss_pred HHhhcCCCceEEEEEEEEEEECCeeeecCCCCC---------CCceeeEEecCC-CCeEEcCceEEEcCCHHHHhcCC
Q psy12524 83 IAKQESSELTYKVEVSYMEIYNEKVHDLLDPKA---------NKQSLKVREHNV-LGPYVDGLSQLAVTSFQARANPT 150 (151)
Q Consensus 83 ~~~~~~~~~~~~v~~S~~eiy~e~v~DLL~~~~---------~~~~l~i~e~~~-~g~~v~gl~~~~v~s~~e~~~ll 150 (151)
++.....++.|.|.+||+|||||+|+|||++.. ....+.+++++. +|++|+|++++.|.|++|+.++|
T Consensus 122 ~~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~v~~l~~~~v~s~~e~~~ll 199 (349)
T 3t0q_A 122 TANLKERGWNYEMECEYIEIYNETILDLLRDFKSHDNIDEILDSQKHDIRHDHEKQGTYITNVTRMKMTSTSQVDTIL 199 (349)
T ss_dssp HHHHGGGTEEEEEEEEEEEEETTEEEETTC---------------CCCEEEETTTTEEEETTCCCEECCCHHHHHHHH
T ss_pred HHHhhhcCceeEEEEEEEEEEcchhhccccccccccccccccccccceeEEecCCCCEEEeCCEEEEeCCHHHHHHHH
Confidence 988777788999999999999999999998753 235678888764 57999999999999999998765
No 23
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=100.00 E-value=1.1e-39 Score=261.85 Aligned_cols=137 Identities=35% Similarity=0.638 Sum_probs=124.0
Q ss_pred CeEEEeceEeccCCCCCCCCCCHHHHHHHHhHHHHHHhhcCCCeeEEeeccCCCCCceeeccCCCC---CCcHHHHHHHH
Q psy12524 3 PKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYTMMGSQDN---KGIIPRLCDSL 79 (151)
Q Consensus 3 ~k~f~fD~vf~~~d~~~~~~~~q~~vy~~~~~~lv~~~~~G~~~~v~~yG~~~sGKt~t~~G~~~~---~Gli~~~~~~l 79 (151)
+++|+||+|| + +++|++||+.++.|+|+++++|+|+||||||+|||||||||+|+..+ +||+||++++|
T Consensus 70 ~~~F~fD~Vf-------~-~~sQ~~Vy~~~~~~lv~~~l~G~N~tIfAYGqTGSGKTyTM~G~~~~~~~~Giipra~~~l 141 (358)
T 2nr8_A 70 DWSFKLDGVL-------H-DASQDLVYETVAKDVVSQALDGYNGTIMCYGQTGAGKTYTMMGATENYKHRGILPRALQQV 141 (358)
T ss_dssp EEEEECSEEE-------E-SCCHHHHHHHHTHHHHHHHHTTCCEEEEEEESTTSSHHHHHTBCSSCGGGBCHHHHHHHHH
T ss_pred ceEEECCeec-------C-CcCHHHHHHHHHHHHHHHHhCCCceEEEEECCCCCCCceEecccccccccCCcHHHHHHHH
Confidence 4789999999 4 68999999999999999999999999999999999999999998764 89999999999
Q ss_pred HHHHHhhcCCCceEEEEEEEEEEECCeeeecCCCCC----CCceeeEEecCCCCeEEcCceEEEcCCHHHHhcCC
Q psy12524 80 FDLIAKQESSELTYKVEVSYMEIYNEKVHDLLDPKA----NKQSLKVREHNVLGPYVDGLSQLAVTSFQARANPT 150 (151)
Q Consensus 80 f~~~~~~~~~~~~~~v~~S~~eiy~e~v~DLL~~~~----~~~~l~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll 150 (151)
|+.++... ++.|.|.+||+|||||+|+|||++.+ ...++.++|++ .|++|+|++++.|.+.+|+.++|
T Consensus 142 F~~i~~~~--~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~~~~~l~i~e~~-~g~~v~gl~~~~v~s~~e~~~ll 213 (358)
T 2nr8_A 142 FRMIEERP--THAITVRVSYLEIYNESLFDLLSTLPYVGPSVTPMTIVENP-QGVFIKGLSVHLTSQEEDAFSLL 213 (358)
T ss_dssp HHHHHTCT--TSCEEEEEEEEEEETTEEEETTSSSTTSCTTTSCCEEEEET-TEEEEETCCCEECSSHHHHHHHH
T ss_pred HHHHhhcC--CceEEEEEEEEEEeCCeeeECcCCccccCccCCceEEEECC-CceEecCCEEEEcCCHHHHHHHH
Confidence 99998543 45899999999999999999998742 34579999999 68999999999999999998764
No 24
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.1e-39 Score=260.36 Aligned_cols=138 Identities=34% Similarity=0.630 Sum_probs=122.1
Q ss_pred CCeEEEeceEeccCCCCCCCCCCHHHHHHHHhHHHHHHhhcCCCeeEEeeccCCCCCceeeccCCC---CCCcHHHHHHH
Q psy12524 2 PPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYTMMGSQD---NKGIIPRLCDS 78 (151)
Q Consensus 2 ~~k~f~fD~vf~~~d~~~~~~~~q~~vy~~~~~~lv~~~~~G~~~~v~~yG~~~sGKt~t~~G~~~---~~Gli~~~~~~ 78 (151)
..++|+||+|| + +++|++||+.++.|+|+++++|+|+||||||+|||||||||.|... ++||+||++++
T Consensus 70 ~~~~F~FD~Vf-------~-~~sQ~~Vy~~~~~plv~~~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~Giipra~~~ 141 (359)
T 3nwn_A 70 TDWSFKLDGVL-------H-DASQDLVYETVAKDVVSQALDGYNGTIMCYGQTGAGKTYTMMGATENYKHRGILPRALQQ 141 (359)
T ss_dssp CEEEEECSEEE-------E-SCCHHHHHHHHTHHHHHHHHTTCCEEEEEEESTTSSHHHHHTBCSSCGGGBCHHHHHHHH
T ss_pred CceEeecCccC-------C-CCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCCCCCccEEeCCccCCccchhhHHHHHHH
Confidence 35789999999 4 4799999999999999999999999999999999999999999754 58999999999
Q ss_pred HHHHHHhhcCCCceEEEEEEEEEEECCeeeecCCCCC----CCceeeEEecCCCCeEEcCceEEEcCCHHHHhcCC
Q psy12524 79 LFDLIAKQESSELTYKVEVSYMEIYNEKVHDLLDPKA----NKQSLKVREHNVLGPYVDGLSQLAVTSFQARANPT 150 (151)
Q Consensus 79 lf~~~~~~~~~~~~~~v~~S~~eiy~e~v~DLL~~~~----~~~~l~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll 150 (151)
||+.++.. .++.|.|.+||+|||||+|+|||++.+ ....+.+++++. |++++|++++.|.+.+|+.++|
T Consensus 142 lF~~~~~~--~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~~~~~~~~~~~~~-g~~v~~l~~~~v~s~~e~~~ll 214 (359)
T 3nwn_A 142 VFRMIEER--PTHAITVRVSYLEIYNESLFDLLSTLPYVGPSVTPMTIVENPQ-GVFIKGLSVHLTSQEEDAFSLL 214 (359)
T ss_dssp HHHHHHTC--TTSCEEEEEEEEEEETTEEEETTSSSTTSCTTTSCCEEEEETT-EEEEETCCCEECSSHHHHHHHH
T ss_pred HHHHhhcC--CCCcEEEEEEEEEEeccccccccccccccccccccceEEecCC-ceEEeccEEEEecCHHHHHHHH
Confidence 99988754 356899999999999999999998643 234678888875 7999999999999999998764
No 25
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.5e-39 Score=260.72 Aligned_cols=138 Identities=30% Similarity=0.552 Sum_probs=123.0
Q ss_pred CeEEEeceEeccCCCCCCCCCCHHHHHHHHhHHHHHHhhcCCCeeEEeeccCCCCCceeeccCCCCCCcHHHHHHHHHHH
Q psy12524 3 PKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYTMMGSQDNKGIIPRLCDSLFDL 82 (151)
Q Consensus 3 ~k~f~fD~vf~~~d~~~~~~~~q~~vy~~~~~~lv~~~~~G~~~~v~~yG~~~sGKt~t~~G~~~~~Gli~~~~~~lf~~ 82 (151)
+++|+||+|| +++++|++||+.+ .|+|+++++|+|+||||||+|||||||||+|+ ++||+||++++||+.
T Consensus 107 ~~~F~FD~VF-------~~~~~Q~~Vf~~v-~~lv~~~l~G~N~tifAYGqTGSGKTyTM~g~--~~Giipr~~~~lF~~ 176 (403)
T 4etp_A 107 VHEFKFDKIF-------DQQDTNVDVFKEV-GQLVQSSLDGYNVAIFAYGQTGSGKTFTMLNP--GDGIIPSTISHIFNW 176 (403)
T ss_dssp EEEEEESEEE-------CTTCCHHHHHHHH-HHHHHHHHTTCCEEEEEESCTTSSHHHHHHCT--TTSHHHHHHHHHHHH
T ss_pred ceEEEcCEEE-------CCCCchHHHHHHH-HHHHHHHhCCcceEEEEECCCCCCCceEeCCC--CCccchhHHHHHHHH
Confidence 4789999999 8999999999985 68999999999999999999999999999986 469999999999999
Q ss_pred HHhhcCCCceEEEEEEEEEEECCeeeecCCCCC-------CCceeeEEecCC-CCeEEcCceEEEcCCHHHHhcCC
Q psy12524 83 IAKQESSELTYKVEVSYMEIYNEKVHDLLDPKA-------NKQSLKVREHNV-LGPYVDGLSQLAVTSFQARANPT 150 (151)
Q Consensus 83 ~~~~~~~~~~~~v~~S~~eiy~e~v~DLL~~~~-------~~~~l~i~e~~~-~g~~v~gl~~~~v~s~~e~~~ll 150 (151)
++.....++.|.|.+||+|||||+|+|||++.. ...++.+++++. ++++|.|++++.|.|.+++..+|
T Consensus 177 i~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~l~~~~v~s~~e~~~ll 252 (403)
T 4etp_A 177 INKLKTKGWDYKVNAEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQETKTTTITNVTSVKLESEEMVEIIL 252 (403)
T ss_dssp HHHHHTTTEEEEEEEEEEEEETTEEEETTCC--------CCSCCCCEEEETTTTEEEETTCCCEECCCHHHHHHHH
T ss_pred HHhhhccCceEEEEEEEEEEecceeeEccCCccccccccccCcceeeEEeCCCCCEEecCcEEEEeCCHHHHHHHH
Confidence 988777788999999999999999999998754 134577887764 56999999999999999998764
No 26
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=100.00 E-value=4.9e-39 Score=258.36 Aligned_cols=137 Identities=28% Similarity=0.443 Sum_probs=116.0
Q ss_pred CeEEEeceEeccCCCCCCCCCCHHHHHHHHhHHHHHHhhc-CCCeeEEeeccCCCCCceeeccCC-----CCCCcHHHHH
Q psy12524 3 PKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQ-GYNACIFAYGQTGSGKSYTMMGSQ-----DNKGIIPRLC 76 (151)
Q Consensus 3 ~k~f~fD~vf~~~d~~~~~~~~q~~vy~~~~~~lv~~~~~-G~~~~v~~yG~~~sGKt~t~~G~~-----~~~Gli~~~~ 76 (151)
.++|+||+|| +++++|++||+.++.|+|+++++ |+||||||||+|||||||||.|+. ..+||+||++
T Consensus 49 ~~~F~FD~Vf-------~~~~~Q~~Vy~~~~~plv~~~~~~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~~~Giipr~~ 121 (360)
T 1ry6_A 49 RHEFIVDKVF-------DDTVDNFTVYENTIKPLIIDLYENGCVCSCFAYGQTGSGKTYTMLGSQPYGQSDTPGIFQYAA 121 (360)
T ss_dssp EEEEECSEEE-------CTTCCHHHHHHHHTHHHHHHHHHHCCEEEEEEECCTTSSHHHHHHBSSSTTTSSCBCHHHHHH
T ss_pred cceEEeeeEe-------cCCCCHHHHHHHHhhhhhhhhccCCceeEEEeeCCCCCCCCEEEecCCCCCCccCCCcHHHHH
Confidence 4689999999 88999999999999999999996 999999999999999999999974 5799999999
Q ss_pred HHHHHHHHhhcCCCceEEEEEEEEEEECCeeeecCCCCCCCceeeEEecCCCCeEEcCceEEEcCCHHHHhcCC
Q psy12524 77 DSLFDLIAKQESSELTYKVEVSYMEIYNEKVHDLLDPKANKQSLKVREHNVLGPYVDGLSQLAVTSFQARANPT 150 (151)
Q Consensus 77 ~~lf~~~~~~~~~~~~~~v~~S~~eiy~e~v~DLL~~~~~~~~l~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll 150 (151)
++||+.++... ..+.+.|.+||+|||||+|+|||++. ..+.+++++.++++|+|++++.|.|.+|++++|
T Consensus 122 ~~lF~~i~~~~-~~~~~~v~vS~~EIYnE~v~DLL~~~---~~~~~~e~~~~~~~v~gl~~~~V~s~~e~~~~l 191 (360)
T 1ry6_A 122 GDIFTFLNIYD-KDNTKGIFISFYEIYCGKLYDLLQKR---KMVAALENGKKEVVVKDLKILRVLTKEELILKM 191 (360)
T ss_dssp HHHHHHHHHHC-SSSCEEEEEEEEEEETTEEEESCCC--------------CCBCGGGSCCEEECSHHHHHHHH
T ss_pred HHHHHHHHhhc-cCCceEEEEEEEEeeCCeeEEcccCC---ccceeeEcCCCCEEEcCcEEEEeCCHHHHHHHH
Confidence 99999987653 34579999999999999999999864 357889999999999999999999999998764
No 27
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=100.00 E-value=2.9e-37 Score=246.76 Aligned_cols=133 Identities=31% Similarity=0.536 Sum_probs=114.8
Q ss_pred CeEEEeceEeccCCCCCCCCCCHHHHHHHHhHHHHHHhhcCCCeeEEeeccCCCCCceeeccCC------CCCCcHHHHH
Q psy12524 3 PKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYTMMGSQ------DNKGIIPRLC 76 (151)
Q Consensus 3 ~k~f~fD~vf~~~d~~~~~~~~q~~vy~~~~~~lv~~~~~G~~~~v~~yG~~~sGKt~t~~G~~------~~~Gli~~~~ 76 (151)
+++|+||+|| +++++|++||+.++.|+|+.+++|+|+||||||+|||||||||.|+. +++||+||++
T Consensus 60 ~~~F~FD~Vf-------~~~~sQ~~Vy~~~~~plv~~~l~G~N~tifAYGQTGSGKTyTM~g~~~~~~~~~~~GIipra~ 132 (344)
T 3dc4_A 60 QNEFHFDHAF-------PATISQDEMYQALILPLVDKLLEGFQCTALAYGQTGTGKSYSMGMTPPGEILPEHLGILPRAL 132 (344)
T ss_dssp TEEEECSEEE-------CTTCCHHHHHHHHTHHHHHHHHHTCCEEEEEESSTTSSHHHHHTCSCGGGSCGGGCCHHHHHH
T ss_pred CcEEEcceEE-------CCCCCHHHHHHhhccchhhHhhCCCceEEEEecCCCCCCCeEEcCCCCCCCCcccCCcHHHHH
Confidence 5789999999 89999999999999999999999999999999999999999998864 4689999999
Q ss_pred HHHHHHHHhhcCC-CceEEEEEEEEEEECCeeeecCCCCCCCceeeEEecCCCCeEEcCceEEEcCCHHHHhcCC
Q psy12524 77 DSLFDLIAKQESS-ELTYKVEVSYMEIYNEKVHDLLDPKANKQSLKVREHNVLGPYVDGLSQLAVTSFQARANPT 150 (151)
Q Consensus 77 ~~lf~~~~~~~~~-~~~~~v~~S~~eiy~e~v~DLL~~~~~~~~l~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll 150 (151)
++||+.++..... ...+.|++||+|||||+|+|||++......+ +..+.|++++.|.|.+|+.++|
T Consensus 133 ~~LF~~i~~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~~--------~~~~~~~~~~~v~s~~e~~~ll 199 (344)
T 3dc4_A 133 GDIFERVTARQENNKDAIQVYASFIEIYNEKPFDLLGSTPHMPMV--------AARCQRCTCLPLHSQADLHHIL 199 (344)
T ss_dssp HHHHHHHHHSSSSCSSCCEEEEEEEEEESSCEEETTSSCTTSBCC--------SSTTTCSCCEECSSHHHHHHHH
T ss_pred HHHHHHHHhhhhccccceEEEEEEEEEeCCeeEEccCCCCCCccc--------cccccCceecccCCHHHHHHHH
Confidence 9999999865433 3569999999999999999999976432211 1224699999999999998764
No 28
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=100.00 E-value=8.1e-37 Score=263.87 Aligned_cols=139 Identities=31% Similarity=0.576 Sum_probs=124.2
Q ss_pred CCeEEEeceEeccCCCCCCCCCCHHHHHHHHhHHHHHHhhcCCCeeEEeeccCCCCCceeeccCCCCCCcHHHHHHHHHH
Q psy12524 2 PPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYTMMGSQDNKGIIPRLCDSLFD 81 (151)
Q Consensus 2 ~~k~f~fD~vf~~~d~~~~~~~~q~~vy~~~~~~lv~~~~~G~~~~v~~yG~~~sGKt~t~~G~~~~~Gli~~~~~~lf~ 81 (151)
+.++|+||+|| +++++|++||+. +.|+|+++++|+|+||||||+|||||||||.|. ++||+||++++||+
T Consensus 428 ~~~~f~fd~vf-------~~~~~q~~v~~~-~~~~v~~~~~G~n~~i~ayGqtgsGKT~Tm~g~--~~Giipr~~~~lf~ 497 (715)
T 4h1g_A 428 SNLRFLFDKIF-------EREQSNDLVFEE-LSQLIQCSLDGTNVCVFAYGQTGSGKTFTMSHP--TNGMIPLSLKKIFN 497 (715)
T ss_dssp EEEEEECSEEE-------CSSCCHHHHGGG-THHHHHHHHTTCCEEEEEESSTTSSHHHHHHCT--TTSHHHHHHHHHHH
T ss_pred CCeEEEeceEe-------CCCCCHHHHHHH-HHHHHHHHhCCceEEEEccCCCCCchhhccCCC--CCCcHHHHHHHHHH
Confidence 46899999999 899999999986 479999999999999999999999999999984 67999999999999
Q ss_pred HHHhhcCCCceEEEEEEEEEEECCeeeecCCCCC-CCceeeEEecCCCC-eEEcCceEEEcCCHHHHhcCC
Q psy12524 82 LIAKQESSELTYKVEVSYMEIYNEKVHDLLDPKA-NKQSLKVREHNVLG-PYVDGLSQLAVTSFQARANPT 150 (151)
Q Consensus 82 ~~~~~~~~~~~~~v~~S~~eiy~e~v~DLL~~~~-~~~~l~i~e~~~~g-~~v~gl~~~~v~s~~e~~~ll 150 (151)
.++.....+..+.|++||+|||||+|+|||++.. ....+.++++...| ++|+||+++.|.|.+|++++|
T Consensus 498 ~~~~~~~~~~~~~v~~s~~Eiyne~i~DLl~~~~~~~~~~~~~~~~~~g~~~v~~l~~~~v~~~~~~~~~~ 568 (715)
T 4h1g_A 498 DIEELKEKGWSYTVRGKFIEIYNEAIVDLLNPKIDPNTKYEIKHDDIAGKTTVTNVSTIDIKSPEQAITIL 568 (715)
T ss_dssp HHHHHGGGTEEEEEEEEEEEEETTEEEESSSCCCCTTCCCCEEEETTTTEEEETTCCCEECSCHHHHHHHH
T ss_pred HHHHhhcCCceEEEEEEEEEEECCEEEECCCCCCCCCCcceeEEecCCCCEEEeCCEEEEcCCHHHHHHHH
Confidence 9988777778999999999999999999998753 34467777766544 999999999999999998764
No 29
>2o0a_A S.cerevisiae chromosome XVI reading frame ORF YPL253C; VIK1, motor homology domain, kinesin, motor domain, microtubule-binding; 1.60A {Saccharomyces cerevisiae}
Probab=99.92 E-value=1.1e-25 Score=173.53 Aligned_cols=123 Identities=9% Similarity=0.082 Sum_probs=105.1
Q ss_pred eEEEeceEeccCCCCCCCCCCHH--HHHHHHhHHHHHHhhc-CCCeeEEeeccCCCCCceeeccCCCCCCcHHHHHHHHH
Q psy12524 4 KTFAFDHCFYSLDPNLPNFASQE--KVFDALGRDILDNAFQ-GYNACIFAYGQTGSGKSYTMMGSQDNKGIIPRLCDSLF 80 (151)
Q Consensus 4 k~f~fD~vf~~~d~~~~~~~~q~--~vy~~~~~~lv~~~~~-G~~~~v~~yG~~~sGKt~t~~G~~~~~Gli~~~~~~lf 80 (151)
++|.||+|| ++.+.|+ +||+++ .++|+.+++ |+|+|+||||+|||||| ||++..+|
T Consensus 57 k~f~FDRVf-------~p~s~Qe~~~vf~E~-~~~i~scLd~GyNvcIfSyGQTGsGKT-------------~ral~q~f 115 (298)
T 2o0a_A 57 HVYKFNRVI-------PHLKVSEDKFFTQEY-SVYHDMCLNQKKNFNLISLSTTPHGSL-------------RESLIKFL 115 (298)
T ss_dssp CEEECSEEE-------ETTTSCHHHHHHHTT-HHHHHHHHHTTCCEEEEEECSSCCHHH-------------HHHHHHHH
T ss_pred ceEEeeeEE-------CccccccHHHHHHHH-HHHHHHHHhCCCceEEEEECCCCCCcc-------------HHHHHHHH
Confidence 789999999 8999999 999996 899999999 99999999999999999 99999999
Q ss_pred HHHHh-hcCCCceEEEEEEEEEEE-CCeeeecCCCCCCCceeeEEecCCCCeEEcCceEEEcCC-HHHHhcCC
Q psy12524 81 DLIAK-QESSELTYKVEVSYMEIY-NEKVHDLLDPKANKQSLKVREHNVLGPYVDGLSQLAVTS-FQARANPT 150 (151)
Q Consensus 81 ~~~~~-~~~~~~~~~v~~S~~eiy-~e~v~DLL~~~~~~~~l~i~e~~~~g~~v~gl~~~~v~s-~~e~~~ll 150 (151)
...+. .. |.|.+.+||+||| ||.++|||...+....++|+.+..+..++.|++.++|.+ ++|+..++
T Consensus 116 ~~~~~~~~---~~Y~~tlq~veLy~Ne~~~DLL~~~~~~~k~eIk~~~~g~~iv~~s~~i~V~~~~edv~~~~ 185 (298)
T 2o0a_A 116 AEKDTIYQ---KQYVITLQFVFLSDDEFSQDMLLDYSHNDKDSIKLKFEKHSISLDSKLVIIENGLEDLPLNF 185 (298)
T ss_dssp HSTTSHHH---HHEEEEEEEEEEECC-CEEETTSCCC------CEEEECSSCEEEESCCEEESSGGGGSCTTT
T ss_pred HHhhhhcc---cceEEEEEEEEEecCCchHHhcCCCCCCCcceEEecCCCCEEecccEEEEccccHHHHHHHh
Confidence 86532 21 7899999999999 999999997444444789999999999999999999999 89887765
No 30
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=95.70 E-value=0.0017 Score=45.91 Aligned_cols=40 Identities=20% Similarity=0.181 Sum_probs=27.7
Q ss_pred CCCHHHHHHHHhHHHHHHhhcCCCeeEEeeccCCCCCceee
Q psy12524 22 FASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 22 ~~~q~~vy~~~~~~lv~~~~~G~~~~v~~yG~~~sGKt~t~ 62 (151)
+..|+++++.. ..+++.+-......++.+|++|+|||+.+
T Consensus 16 ~~~~~~~~~~~-~~~~~~~~~~~g~~~~l~G~~G~GKTtL~ 55 (180)
T 3ec2_A 16 NVSQNRALLTI-RVFVHNFNPEEGKGLTFVGSPGVGKTHLA 55 (180)
T ss_dssp SHHHHHHHHHH-HHHHHSCCGGGCCEEEECCSSSSSHHHHH
T ss_pred CHHHHHHHHHH-HHHHHhccccCCCEEEEECCCCCCHHHHH
Confidence 44577777555 45555543333456788999999999988
No 31
>4etp_B Spindle POLE BODY-associated protein VIK1; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=93.49 E-value=0.5 Score=36.93 Aligned_cols=90 Identities=18% Similarity=0.326 Sum_probs=57.6
Q ss_pred CCeEEEeceEeccCCCCCCCC-CCHHHHHHHHhHHHHHHhh-cCCCeeEEeeccCCCCCceeeccCCCCCCcHHHHHHHH
Q psy12524 2 PPKTFAFDHCFYSLDPNLPNF-ASQEKVFDALGRDILDNAF-QGYNACIFAYGQTGSGKSYTMMGSQDNKGIIPRLCDSL 79 (151)
Q Consensus 2 ~~k~f~fD~vf~~~d~~~~~~-~~q~~vy~~~~~~lv~~~~-~G~~~~v~~yG~~~sGKt~t~~G~~~~~Gli~~~~~~l 79 (151)
..++|.|++++ +.. .+.++++..-.+..++-++ .+.|++++.-|..- ..- .-..+
T Consensus 90 ~~~~y~FnRiI-------p~~~~~e~~~l~qE~q~y~DmcL~~~~NfslIsis~~~------------w~~----Lr~~l 146 (333)
T 4etp_B 90 SEHVYKFNRVI-------PHLKVSEDCFFTQEYSVYHDMALNQKKNFNLISLSTTP------------HGS----LRESL 146 (333)
T ss_dssp CCCEEECSEEE-------ETTTCCHHHHHHHTTHHHHHHHHHTTCCEEEEEEESSC------------CCH----HHHHH
T ss_pred CcceEEEeeee-------chhhcchHHHHHHHHHHHHHHHHccCCCeeEEEecCCC------------cHH----HHHHH
Confidence 35789999999 333 3445555555588898888 69999999987652 111 22223
Q ss_pred HHHHHhhcC-CCceEEEEEEEEEEECCe-eeecCCCC
Q psy12524 80 FDLIAKQES-SELTYKVEVSYMEIYNEK-VHDLLDPK 114 (151)
Q Consensus 80 f~~~~~~~~-~~~~~~v~~S~~eiy~e~-v~DLL~~~ 114 (151)
+..+..... -.+.|.+.+.|+.+-++. ..|||.+.
T Consensus 147 L~fi~~k~~~Y~~~y~i~lQ~V~Lse~~~S~DlL~~~ 183 (333)
T 4etp_B 147 IKFLAEKDTIYQKQYVITLQFVFLSDDEFSQDMLLDY 183 (333)
T ss_dssp HHHHHSTTCHHHHHEEEEEEEEECCSSSCCEESSCC-
T ss_pred HHHHHhcccccccceEEEEEEEEEcCCCchhhhhccc
Confidence 333321100 025788999998887665 69999875
No 32
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=93.41 E-value=0.044 Score=37.75 Aligned_cols=29 Identities=17% Similarity=0.215 Sum_probs=21.8
Q ss_pred HHHHHHhhcCCCeeEEeeccCCCCCceee
Q psy12524 34 RDILDNAFQGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 34 ~~lv~~~~~G~~~~v~~yG~~~sGKt~t~ 62 (151)
..+++.+..+....++.+|.+|+|||+.+
T Consensus 32 ~~l~~~l~~~~~~~~ll~G~~G~GKT~l~ 60 (195)
T 1jbk_A 32 RRTIQVLQRRTKNNPVLIGEPGVGKTAIV 60 (195)
T ss_dssp HHHHHHHTSSSSCEEEEECCTTSCHHHHH
T ss_pred HHHHHHHhcCCCCceEEECCCCCCHHHHH
Confidence 34444455566677899999999999987
No 33
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=93.36 E-value=0.045 Score=38.93 Aligned_cols=38 Identities=18% Similarity=0.283 Sum_probs=24.0
Q ss_pred CHHHHHHHHhHHHHHHhhcCC-CeeEEeeccCCCCCceee
Q psy12524 24 SQEKVFDALGRDILDNAFQGY-NACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 24 ~q~~vy~~~~~~lv~~~~~G~-~~~v~~yG~~~sGKt~t~ 62 (151)
.+..+++.. ...+...-.+. +..++.+|.+|+|||+.+
T Consensus 33 ~~~~~~~~~-~~~~~~~~~~~~~~~~~l~G~~GtGKT~la 71 (202)
T 2w58_A 33 GRIKAIRFA-ERFVAEYEPGKKMKGLYLHGSFGVGKTYLL 71 (202)
T ss_dssp HHHHHHHHH-HHHHHHCCSSCCCCEEEEECSTTSSHHHHH
T ss_pred hHHHHHHHH-HHHHHHhhhccCCCeEEEECCCCCCHHHHH
Confidence 455565543 33444332221 267899999999999987
No 34
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=93.27 E-value=0.02 Score=44.34 Aligned_cols=38 Identities=29% Similarity=0.482 Sum_probs=24.6
Q ss_pred CHHHHHHHHhHHHHHHhhcCCCeeEEeeccCCCCCceee
Q psy12524 24 SQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 24 ~q~~vy~~~~~~lv~~~~~G~~~~v~~yG~~~sGKt~t~ 62 (151)
++..+++. +...++..-.+....++.||++|+|||+.+
T Consensus 132 ~~~~~~~~-~~~~i~~~~~~~~~~lll~G~~GtGKT~La 169 (308)
T 2qgz_A 132 SRMEAFSA-ILDFVEQYPSAEQKGLYLYGDMGIGKSYLL 169 (308)
T ss_dssp HHHHHHHH-HHHHHHHCSCSSCCEEEEECSTTSSHHHHH
T ss_pred HHHHHHHH-HHHHHHhccccCCceEEEECCCCCCHHHHH
Confidence 34445542 234444432233567899999999999998
No 35
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=92.79 E-value=0.05 Score=37.50 Aligned_cols=29 Identities=17% Similarity=0.212 Sum_probs=21.8
Q ss_pred HHHHHHhhcCCCeeEEeeccCCCCCceee
Q psy12524 34 RDILDNAFQGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 34 ~~lv~~~~~G~~~~v~~yG~~~sGKt~t~ 62 (151)
..+++.+..+....++.+|.+|+|||+.+
T Consensus 32 ~~l~~~l~~~~~~~vll~G~~G~GKT~la 60 (187)
T 2p65_A 32 RRAIQILSRRTKNNPILLGDPGVGKTAIV 60 (187)
T ss_dssp HHHHHHHTSSSSCEEEEESCGGGCHHHHH
T ss_pred HHHHHHHhCCCCCceEEECCCCCCHHHHH
Confidence 34444445566677899999999999887
No 36
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=92.09 E-value=0.065 Score=41.91 Aligned_cols=24 Identities=13% Similarity=0.084 Sum_probs=20.4
Q ss_pred HhhcCCCeeEEeeccCCCCCceee
Q psy12524 39 NAFQGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 39 ~~~~G~~~~v~~yG~~~sGKt~t~ 62 (151)
.+..+...+++.||.+|+|||.++
T Consensus 39 ~i~~~~~~~lli~GpPGTGKT~~v 62 (318)
T 3te6_A 39 SLMSSQNKLFYITNADDSTKFQLV 62 (318)
T ss_dssp HHHTTCCCEEEEECCCSHHHHHHH
T ss_pred HhcCCCCCeEEEECCCCCCHHHHH
Confidence 344678889999999999999887
No 37
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=90.98 E-value=0.14 Score=39.65 Aligned_cols=38 Identities=26% Similarity=0.274 Sum_probs=25.9
Q ss_pred CHHHHHHHHhHHHHHHhhcCCCe--eEEeeccCCCCCceee
Q psy12524 24 SQEKVFDALGRDILDNAFQGYNA--CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 24 ~q~~vy~~~~~~lv~~~~~G~~~--~v~~yG~~~sGKt~t~ 62 (151)
.++..-+.. ..+++.+..|... .++.||++|+|||..+
T Consensus 48 G~~~~~~~l-~~l~~~~~~~~~~~~~vLl~GppGtGKT~la 87 (368)
T 3uk6_A 48 GQLAARRAA-GVVLEMIREGKIAGRAVLIAGQPGTGKTAIA 87 (368)
T ss_dssp SCHHHHHHH-HHHHHHHHTTCCTTCEEEEEESTTSSHHHHH
T ss_pred ChHHHHHHH-HHHHHHHHcCCCCCCEEEEECCCCCCHHHHH
Confidence 445454332 4455555566653 7899999999999887
No 38
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=90.36 E-value=0.11 Score=38.58 Aligned_cols=18 Identities=22% Similarity=0.504 Sum_probs=15.5
Q ss_pred CeeEEeeccCCCCCceee
Q psy12524 45 NACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 45 ~~~v~~yG~~~sGKt~t~ 62 (151)
...++.+|.+|+|||+..
T Consensus 29 ~~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 29 DKPVLIIGERGTGKELIA 46 (265)
T ss_dssp CSCEEEECCTTSCHHHHH
T ss_pred CCCEEEECCCCCcHHHHH
Confidence 456889999999999876
No 39
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=90.36 E-value=0.1 Score=39.77 Aligned_cols=58 Identities=22% Similarity=0.295 Sum_probs=35.8
Q ss_pred HHHHHHHhHHHHHHhhc--CC--CeeEEeeccCCCCCceeec------cC-----------CCCCCcHHHHHHHHHHHH
Q psy12524 26 EKVFDALGRDILDNAFQ--GY--NACIFAYGQTGSGKSYTMM------GS-----------QDNKGIIPRLCDSLFDLI 83 (151)
Q Consensus 26 ~~vy~~~~~~lv~~~~~--G~--~~~v~~yG~~~sGKt~t~~------G~-----------~~~~Gli~~~~~~lf~~~ 83 (151)
+.+-+..+..++...+. |. ...++.||++|+|||+... |. ....|-.+..+..+|...
T Consensus 13 ~~~~~~~~~~~~k~~l~~~~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a 91 (293)
T 3t15_A 13 PAFMDKLVVHITKNFLKLPNIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREA 91 (293)
T ss_dssp HHHHHHHHHHHHHTTSCCTTCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHH
Confidence 45555665566665443 22 2467889999999998873 21 123466677777788765
No 40
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=90.01 E-value=0.085 Score=40.53 Aligned_cols=23 Identities=26% Similarity=0.458 Sum_probs=17.6
Q ss_pred hhcCCCeeEEeeccCCCCCceee
Q psy12524 40 AFQGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 40 ~~~G~~~~v~~yG~~~sGKt~t~ 62 (151)
.+.+....++.||.+|+|||+.+
T Consensus 40 ~~~~~~~~vLl~G~~GtGKT~la 62 (350)
T 1g8p_A 40 AVDPGIGGVLVFGDRGTGKSTAV 62 (350)
T ss_dssp HHCGGGCCEEEECCGGGCTTHHH
T ss_pred hhCCCCceEEEECCCCccHHHHH
Confidence 33334445999999999999876
No 41
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=89.53 E-value=0.19 Score=35.33 Aligned_cols=21 Identities=24% Similarity=0.339 Sum_probs=16.7
Q ss_pred cCCCeeEEeeccCCCCCceee
Q psy12524 42 QGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 42 ~G~~~~v~~yG~~~sGKt~t~ 62 (151)
.+....++.+|.+|+|||+.+
T Consensus 35 ~~~~~~~ll~G~~G~GKT~l~ 55 (226)
T 2chg_A 35 RKNIPHLLFSGPPGTGKTATA 55 (226)
T ss_dssp TTCCCCEEEECSTTSSHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHH
Confidence 344445899999999999876
No 42
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=89.27 E-value=0.14 Score=38.26 Aligned_cols=41 Identities=24% Similarity=0.365 Sum_probs=27.1
Q ss_pred CCeeEEeeccCCCCCceeecc------C-----------CCCCCcHHHHHHHHHHHHH
Q psy12524 44 YNACIFAYGQTGSGKSYTMMG------S-----------QDNKGIIPRLCDSLFDLIA 84 (151)
Q Consensus 44 ~~~~v~~yG~~~sGKt~t~~G------~-----------~~~~Gli~~~~~~lf~~~~ 84 (151)
....++.||++|+|||+.+.. . ....|-....+..+|....
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKKFIGEGASLVKDIFKLAK 107 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCCCSTTHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHHHhccchHHHHHHHHHHHHH
Confidence 345689999999999988732 0 1224555666667776554
No 43
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=89.17 E-value=0.22 Score=35.69 Aligned_cols=20 Identities=20% Similarity=0.393 Sum_probs=17.1
Q ss_pred CCCeeEEeeccCCCCCceee
Q psy12524 43 GYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 43 G~~~~v~~yG~~~sGKt~t~ 62 (151)
+....++.+|++|+|||+.+
T Consensus 50 ~~~~~~ll~G~~G~GKT~la 69 (242)
T 3bos_A 50 DGVQAIYLWGPVKSGRTHLI 69 (242)
T ss_dssp CSCSEEEEECSTTSSHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHH
Confidence 35667899999999999887
No 44
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=88.81 E-value=0.13 Score=39.43 Aligned_cols=18 Identities=39% Similarity=0.717 Sum_probs=15.8
Q ss_pred CeeEEeeccCCCCCceee
Q psy12524 45 NACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 45 ~~~v~~yG~~~sGKt~t~ 62 (151)
...++.||++|+|||+.+
T Consensus 37 ~~~lll~G~~GtGKT~la 54 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLL 54 (324)
T ss_dssp CSSEEEECSSSSSHHHHH
T ss_pred CCeEEEECCCCCcHHHHH
Confidence 356899999999999988
No 45
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=88.72 E-value=0.39 Score=35.73 Aligned_cols=21 Identities=19% Similarity=0.162 Sum_probs=17.9
Q ss_pred cCCCeeEEeeccCCCCCceee
Q psy12524 42 QGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 42 ~G~~~~v~~yG~~~sGKt~t~ 62 (151)
......++.+|++|+|||+..
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la 81 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALA 81 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHH
T ss_pred CCCCeEEEEECCCCCcHHHHH
Confidence 455678999999999999887
No 46
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=88.45 E-value=0.37 Score=39.00 Aligned_cols=38 Identities=21% Similarity=0.209 Sum_probs=26.7
Q ss_pred CHHHHHHHHhHHHHHHhhcCCC--eeEEeeccCCCCCceee
Q psy12524 24 SQEKVFDALGRDILDNAFQGYN--ACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 24 ~q~~vy~~~~~~lv~~~~~G~~--~~v~~yG~~~sGKt~t~ 62 (151)
.|+++-+.. ..+++.+..|.. ..++.||++|+|||+..
T Consensus 41 G~~~~~~~l-~~~~~~~~~~~~~~~~iLl~GppGtGKT~la 80 (456)
T 2c9o_A 41 GQENAREAC-GVIVELIKSKKMAGRAVLLAGPPGTGKTALA 80 (456)
T ss_dssp SCHHHHHHH-HHHHHHHHTTCCTTCEEEEECCTTSSHHHHH
T ss_pred CHHHHHHHH-HHHHHHHHhCCCCCCeEEEECCCcCCHHHHH
Confidence 556665544 456666666653 36889999999999876
No 47
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.68 E-value=0.35 Score=39.42 Aligned_cols=61 Identities=23% Similarity=0.365 Sum_probs=40.0
Q ss_pred HHHHHHHhHHHHH-Hhhc--CC--CeeEEeeccCCCCCceeecc--------------C---CCCCCcHHHHHHHHHHHH
Q psy12524 26 EKVFDALGRDILD-NAFQ--GY--NACIFAYGQTGSGKSYTMMG--------------S---QDNKGIIPRLCDSLFDLI 83 (151)
Q Consensus 26 ~~vy~~~~~~lv~-~~~~--G~--~~~v~~yG~~~sGKt~t~~G--------------~---~~~~Gli~~~~~~lf~~~ 83 (151)
+++-+.++.|+.. ..+. |. .-.++.||++|||||.+... + ....|--.+.++.+|...
T Consensus 191 ~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~~~vGese~~ir~lF~~A 270 (434)
T 4b4t_M 191 EELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMYIGEGAKLVRDAFALA 270 (434)
T ss_dssp HHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCSSCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhhcccchHHHHHHHHHHHH
Confidence 4444555556542 2332 33 45689999999999977622 1 234688889999999877
Q ss_pred Hhh
Q psy12524 84 AKQ 86 (151)
Q Consensus 84 ~~~ 86 (151)
...
T Consensus 271 ~~~ 273 (434)
T 4b4t_M 271 KEK 273 (434)
T ss_dssp HHH
T ss_pred Hhc
Confidence 644
No 48
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=87.66 E-value=0.18 Score=37.41 Aligned_cols=18 Identities=22% Similarity=0.434 Sum_probs=15.4
Q ss_pred CeeEEeeccCCCCCceee
Q psy12524 45 NACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 45 ~~~v~~yG~~~sGKt~t~ 62 (151)
...++.||++|+|||+.+
T Consensus 44 ~~~vll~G~~GtGKT~la 61 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLA 61 (268)
T ss_dssp CSCCCCBCSSCSSHHHHH
T ss_pred CceEEEECCCCCcHHHHH
Confidence 345889999999999887
No 49
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=86.15 E-value=0.23 Score=34.07 Aligned_cols=18 Identities=33% Similarity=0.739 Sum_probs=15.1
Q ss_pred CeeEEeeccCCCCCceee
Q psy12524 45 NACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 45 ~~~v~~yG~~~sGKt~t~ 62 (151)
...++.+|.+|+|||+.+
T Consensus 36 g~~~~l~G~~G~GKTtL~ 53 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLL 53 (149)
T ss_dssp CSEEEEESSSTTTTCHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 345778999999999988
No 50
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=85.34 E-value=0.44 Score=36.73 Aligned_cols=25 Identities=28% Similarity=0.461 Sum_probs=18.3
Q ss_pred HHhhcCCCeeEEeeccCCCCCceee
Q psy12524 38 DNAFQGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 38 ~~~~~G~~~~v~~yG~~~sGKt~t~ 62 (151)
..+-.|.-..++.||++|+|||+++
T Consensus 39 ~~i~~g~~~~~ll~Gp~G~GKTtla 63 (340)
T 1sxj_C 39 KFVDEGKLPHLLFYGPPGTGKTSTI 63 (340)
T ss_dssp HHHHTTCCCCEEEECSSSSSHHHHH
T ss_pred HHHhcCCCceEEEECCCCCCHHHHH
Confidence 3344554434788999999999887
No 51
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=85.26 E-value=0.47 Score=35.71 Aligned_cols=19 Identities=21% Similarity=0.258 Sum_probs=16.1
Q ss_pred CCeeEEeeccCCCCCceee
Q psy12524 44 YNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 44 ~~~~v~~yG~~~sGKt~t~ 62 (151)
....++.||++|+|||+..
T Consensus 66 ~~~~vll~G~~GtGKT~la 84 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVA 84 (309)
T ss_dssp CCCEEEEEECTTSSHHHHH
T ss_pred CCceEEEECCCCCCHHHHH
Confidence 3446899999999999887
No 52
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=84.43 E-value=1 Score=34.68 Aligned_cols=39 Identities=23% Similarity=0.359 Sum_probs=26.0
Q ss_pred CCHHHHHHHHhHHHHHHhhcCC-Ce--eEEeeccCCCCCceee
Q psy12524 23 ASQEKVFDALGRDILDNAFQGY-NA--CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 23 ~~q~~vy~~~~~~lv~~~~~G~-~~--~v~~yG~~~sGKt~t~ 62 (151)
..++...+... ..+.....|. .. .++.+|.+|+|||.++
T Consensus 20 ~gr~~~~~~l~-~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~ 61 (389)
T 1fnn_A 20 PHREQQLQQLD-ILLGNWLRNPGHHYPRATLLGRPGTGKTVTL 61 (389)
T ss_dssp TTCHHHHHHHH-HHHHHHHHSTTSSCCEEEEECCTTSSHHHHH
T ss_pred CChHHHHHHHH-HHHHHHHcCCCCCCCeEEEECCCCCCHHHHH
Confidence 44555555553 4455555443 34 6889999999999887
No 53
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=84.14 E-value=0.22 Score=37.95 Aligned_cols=18 Identities=28% Similarity=0.586 Sum_probs=15.6
Q ss_pred CeeEEeeccCCCCCceee
Q psy12524 45 NACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 45 ~~~v~~yG~~~sGKt~t~ 62 (151)
...++.||++|+|||..+
T Consensus 49 ~~~vLL~Gp~GtGKT~la 66 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLA 66 (301)
T ss_dssp CSEEEEECSSSSSHHHHH
T ss_pred CceEEEECCCCcCHHHHH
Confidence 456899999999999876
No 54
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.14 E-value=0.61 Score=37.88 Aligned_cols=42 Identities=26% Similarity=0.488 Sum_probs=31.8
Q ss_pred CeeEEeeccCCCCCceeecc--------------C---CCCCCcHHHHHHHHHHHHHhh
Q psy12524 45 NACIFAYGQTGSGKSYTMMG--------------S---QDNKGIIPRLCDSLFDLIAKQ 86 (151)
Q Consensus 45 ~~~v~~yG~~~sGKt~t~~G--------------~---~~~~Gli~~~~~~lf~~~~~~ 86 (151)
.-.++.||++|||||.+... + ....|--.+.++.+|......
T Consensus 206 prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~~~~Ge~e~~ir~lF~~A~~~ 264 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYLGEGPRMVRDVFRLAREN 264 (428)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCCSSCSHHHHHHHHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhccccchhHHHHHHHHHHHHHc
Confidence 34589999999999977632 1 234688899999999887644
No 55
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=83.80 E-value=0.5 Score=31.84 Aligned_cols=20 Identities=20% Similarity=0.522 Sum_probs=16.5
Q ss_pred CCCeeEEeeccCCCCCceee
Q psy12524 43 GYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 43 G~~~~v~~yG~~~sGKt~t~ 62 (151)
..+..|+.+|.+|+|||+..
T Consensus 22 ~~~~~vll~G~~GtGKt~lA 41 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGA 41 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHH
Confidence 34556899999999999876
No 56
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=83.62 E-value=0.85 Score=35.22 Aligned_cols=38 Identities=16% Similarity=0.235 Sum_probs=25.4
Q ss_pred CHHHHHHHHhHHHHHHhhc-CCCeeEEeeccCCCCCceee
Q psy12524 24 SQEKVFDALGRDILDNAFQ-GYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 24 ~q~~vy~~~~~~lv~~~~~-G~~~~v~~yG~~~sGKt~t~ 62 (151)
.+++..+... ..+..+.. +....++.+|++|+|||.++
T Consensus 24 gr~~~~~~l~-~~l~~~~~~~~~~~vll~G~~G~GKT~la 62 (384)
T 2qby_B 24 FREDILRDAA-IAIRYFVKNEVKFSNLFLGLTGTGKTFVS 62 (384)
T ss_dssp TCHHHHHHHH-HHHHHHHTTCCCCEEEEEECTTSSHHHHH
T ss_pred ChHHHHHHHH-HHHHHHHcCCCCCcEEEECCCCCCHHHHH
Confidence 4455555443 34455444 44558999999999999877
No 57
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=83.39 E-value=0.42 Score=36.78 Aligned_cols=39 Identities=26% Similarity=0.410 Sum_probs=25.0
Q ss_pred CCHHHHHHHHhHHHHHHhh-cCCCeeEEeeccCCCCCceee
Q psy12524 23 ASQEKVFDALGRDILDNAF-QGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 23 ~~q~~vy~~~~~~lv~~~~-~G~~~~v~~yG~~~sGKt~t~ 62 (151)
..++...+... ..+..++ .+...+++.+|++|+|||..+
T Consensus 22 ~gr~~~~~~l~-~~l~~~~~~~~~~~vll~G~~G~GKT~l~ 61 (387)
T 2v1u_A 22 PHREAELRRLA-EVLAPALRGEKPSNALLYGLTGTGKTAVA 61 (387)
T ss_dssp TTCHHHHHHHH-HTTGGGTSSCCCCCEEECBCTTSSHHHHH
T ss_pred CCHHHHHHHHH-HHHHHHHcCCCCCcEEEECCCCCCHHHHH
Confidence 34455554443 2333333 345667899999999999887
No 58
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=83.14 E-value=1.1 Score=32.72 Aligned_cols=41 Identities=20% Similarity=0.186 Sum_probs=27.3
Q ss_pred CCeeEEeeccCCCCCceeecc------C-----------CCCCCcHHHHHHHHHHHHH
Q psy12524 44 YNACIFAYGQTGSGKSYTMMG------S-----------QDNKGIIPRLCDSLFDLIA 84 (151)
Q Consensus 44 ~~~~v~~yG~~~sGKt~t~~G------~-----------~~~~Gli~~~~~~lf~~~~ 84 (151)
....++.||++|+|||+.+.. . ....|.....++.+|....
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 95 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIGGLGAARVRSLFKEAR 95 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSSTTHHHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhccChhHHHHHHHHHHHH
Confidence 345689999999999988732 1 0123555666777777654
No 59
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=83.14 E-value=0.57 Score=37.84 Aligned_cols=27 Identities=33% Similarity=0.425 Sum_probs=21.4
Q ss_pred HHHHhhcCCCeeEEeeccCCCCCceee
Q psy12524 36 ILDNAFQGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 36 lv~~~~~G~~~~v~~yG~~~sGKt~t~ 62 (151)
.++.++......++..|++|||||.++
T Consensus 158 ~L~~l~~~~ggii~I~GpnGSGKTTlL 184 (418)
T 1p9r_A 158 NFRRLIKRPHGIILVTGPTGSGKSTTL 184 (418)
T ss_dssp HHHHHHTSSSEEEEEECSTTSCHHHHH
T ss_pred HHHHHHHhcCCeEEEECCCCCCHHHHH
Confidence 455555555667889999999999988
No 60
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=82.72 E-value=0.66 Score=34.88 Aligned_cols=36 Identities=22% Similarity=0.343 Sum_probs=23.2
Q ss_pred CCHHHHHHHHhHHHHHHhhcCCCeeEEeeccCCCCCceee
Q psy12524 23 ASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 23 ~~q~~vy~~~~~~lv~~~~~G~~~~v~~yG~~~sGKt~t~ 62 (151)
..++++.+.. ... +-.|....++.||++|+|||.++
T Consensus 28 ~g~~~~~~~l-~~~---l~~~~~~~~ll~G~~G~GKT~la 63 (327)
T 1iqp_A 28 VGQEHIVKRL-KHY---VKTGSMPHLLFAGPPGVGKTTAA 63 (327)
T ss_dssp CSCHHHHHHH-HHH---HHHTCCCEEEEESCTTSSHHHHH
T ss_pred hCCHHHHHHH-HHH---HHcCCCCeEEEECcCCCCHHHHH
Confidence 4455555433 222 33355445899999999999877
No 61
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=82.45 E-value=0.65 Score=31.23 Aligned_cols=28 Identities=18% Similarity=0.183 Sum_probs=19.0
Q ss_pred HHHHHhhcCCCeeEEeeccCCCCCceeec
Q psy12524 35 DILDNAFQGYNACIFAYGQTGSGKSYTMM 63 (151)
Q Consensus 35 ~lv~~~~~G~~~~v~~yG~~~sGKt~t~~ 63 (151)
..+..+.. .+..|+.+|.+|+|||+...
T Consensus 18 ~~~~~~~~-~~~~vll~G~~GtGKt~lA~ 45 (143)
T 3co5_A 18 REVEAAAK-RTSPVFLTGEAGSPFETVAR 45 (143)
T ss_dssp HHHHHHHT-CSSCEEEEEETTCCHHHHHG
T ss_pred HHHHHHhC-CCCcEEEECCCCccHHHHHH
Confidence 33444333 34458889999999998763
No 62
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=82.34 E-value=0.24 Score=37.25 Aligned_cols=40 Identities=20% Similarity=0.361 Sum_probs=26.5
Q ss_pred CeeEEeeccCCCCCceeecc--------------C---CCCCCcHHHHHHHHHHHHH
Q psy12524 45 NACIFAYGQTGSGKSYTMMG--------------S---QDNKGIIPRLCDSLFDLIA 84 (151)
Q Consensus 45 ~~~v~~yG~~~sGKt~t~~G--------------~---~~~~Gli~~~~~~lf~~~~ 84 (151)
...++.+|++|+|||..+.- . ....|-....++.+|....
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~ 110 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVAR 110 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTSSSSCSCHHHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHhhcccchHHHHHHHHHHHHH
Confidence 45789999999999987621 0 1123445566777776654
No 63
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=82.34 E-value=0.7 Score=32.56 Aligned_cols=17 Identities=24% Similarity=0.333 Sum_probs=15.0
Q ss_pred eeEEeeccCCCCCceee
Q psy12524 46 ACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 46 ~~v~~yG~~~sGKt~t~ 62 (151)
..++.+|.+|+|||..+
T Consensus 46 ~~~ll~G~~G~GKT~l~ 62 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIA 62 (250)
T ss_dssp SEEEEECSTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46889999999999877
No 64
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.19 E-value=0.84 Score=36.84 Aligned_cols=61 Identities=20% Similarity=0.373 Sum_probs=40.4
Q ss_pred HHHHHHHhHHHHHH-hhc--CC--CeeEEeeccCCCCCceeecc--------------C---CCCCCcHHHHHHHHHHHH
Q psy12524 26 EKVFDALGRDILDN-AFQ--GY--NACIFAYGQTGSGKSYTMMG--------------S---QDNKGIIPRLCDSLFDLI 83 (151)
Q Consensus 26 ~~vy~~~~~~lv~~-~~~--G~--~~~v~~yG~~~sGKt~t~~G--------------~---~~~~Gli~~~~~~lf~~~ 83 (151)
+++-+.+..|+... .+. |. .-.++.||++|+|||.+..- + ....|--.+.++.+|...
T Consensus 158 ~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk~vGese~~vr~lF~~A 237 (405)
T 4b4t_J 158 KEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVRELFVMA 237 (405)
T ss_dssp HHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCSSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhccccchHHHHHHHHHHHH
Confidence 44444555565532 333 33 34689999999999987622 1 224688899999999987
Q ss_pred Hhh
Q psy12524 84 AKQ 86 (151)
Q Consensus 84 ~~~ 86 (151)
...
T Consensus 238 r~~ 240 (405)
T 4b4t_J 238 REH 240 (405)
T ss_dssp HHT
T ss_pred HHh
Confidence 644
No 65
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=81.88 E-value=0.68 Score=34.59 Aligned_cols=18 Identities=33% Similarity=0.433 Sum_probs=15.7
Q ss_pred CeeEEeeccCCCCCceee
Q psy12524 45 NACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 45 ~~~v~~yG~~~sGKt~t~ 62 (151)
...++.+|++|+|||+.+
T Consensus 50 ~~~vll~G~~GtGKT~la 67 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIA 67 (310)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 457889999999999876
No 66
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=81.85 E-value=0.8 Score=37.26 Aligned_cols=29 Identities=17% Similarity=0.251 Sum_probs=20.9
Q ss_pred HHHHhhcCCCeeEEeeccCCCCCceeecc
Q psy12524 36 ILDNAFQGYNACIFAYGQTGSGKSYTMMG 64 (151)
Q Consensus 36 lv~~~~~G~~~~v~~yG~~~sGKt~t~~G 64 (151)
+++.+..+....++.+|.+|+|||..+.+
T Consensus 192 l~~~l~r~~~~~~LL~G~pG~GKT~la~~ 220 (468)
T 3pxg_A 192 VIEVLSRRTKNNPVLIGEPGVGKTAIAEG 220 (468)
T ss_dssp HHHHHHCSSSCEEEEESCTTTTTHHHHHH
T ss_pred HHHHHhccCCCCeEEECCCCCCHHHHHHH
Confidence 34444445566788999999999988743
No 67
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=81.82 E-value=0.53 Score=35.96 Aligned_cols=27 Identities=22% Similarity=0.390 Sum_probs=19.2
Q ss_pred HHHHhhcCCCeeEEeeccCCCCCceee
Q psy12524 36 ILDNAFQGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 36 lv~~~~~G~~~~v~~yG~~~sGKt~t~ 62 (151)
+...+..|....++.+|++|+|||.++
T Consensus 49 l~~~l~~~~~~~~ll~G~~G~GKT~la 75 (353)
T 1sxj_D 49 LKKTLKSANLPHMLFYGPPGTGKTSTI 75 (353)
T ss_dssp HHHHTTCTTCCCEEEECSTTSSHHHHH
T ss_pred HHHHHhcCCCCEEEEECCCCCCHHHHH
Confidence 333444554344899999999999876
No 68
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=81.58 E-value=0.24 Score=38.78 Aligned_cols=20 Identities=30% Similarity=0.532 Sum_probs=16.8
Q ss_pred CCCeeEEeeccCCCCCceee
Q psy12524 43 GYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 43 G~~~~v~~yG~~~sGKt~t~ 62 (151)
.....++.||.+|+|||..+
T Consensus 115 ~~~~~vLl~GppGtGKT~la 134 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIG 134 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHH
T ss_pred CCCceEEEECCCCCCHHHHH
Confidence 34567899999999999876
No 69
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=81.40 E-value=0.63 Score=36.74 Aligned_cols=27 Identities=30% Similarity=0.413 Sum_probs=20.4
Q ss_pred HHHHhhcCCCeeEEeeccCCCCCceee
Q psy12524 36 ILDNAFQGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 36 lv~~~~~G~~~~v~~yG~~~sGKt~t~ 62 (151)
.+..+.......++..|++|||||.++
T Consensus 114 ~l~~l~~~~~g~i~I~GptGSGKTTlL 140 (356)
T 3jvv_A 114 VFKRVSDVPRGLVLVTGPTGSGKSTTL 140 (356)
T ss_dssp HHHHHHHCSSEEEEEECSTTSCHHHHH
T ss_pred HHHHHHhCCCCEEEEECCCCCCHHHHH
Confidence 444545445557888999999999988
No 70
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=81.16 E-value=0.62 Score=34.17 Aligned_cols=16 Identities=25% Similarity=0.418 Sum_probs=14.4
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
.++.+|++|+|||+.+
T Consensus 51 g~ll~G~~G~GKTtl~ 66 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLA 66 (254)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 3899999999999887
No 71
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=81.00 E-value=0.64 Score=37.78 Aligned_cols=40 Identities=18% Similarity=0.312 Sum_probs=26.3
Q ss_pred CCCHHHHHHHHhHHHHHHhhcCCCeeEEeeccCCCCCceee
Q psy12524 22 FASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 22 ~~~q~~vy~~~~~~lv~~~~~G~~~~v~~yG~~~sGKt~t~ 62 (151)
-..|+.+.... ..+...+-.|.-.+++.||++|+|||...
T Consensus 28 ivGq~~~~~~~-~~L~~~i~~~~~~~vLL~GppGtGKTtlA 67 (447)
T 3pvs_A 28 YIGQQHLLAAG-KPLPRAIEAGHLHSMILWGPPGTGKTTLA 67 (447)
T ss_dssp CCSCHHHHSTT-SHHHHHHHHTCCCEEEEECSTTSSHHHHH
T ss_pred hCCcHHHHhch-HHHHHHHHcCCCcEEEEECCCCCcHHHHH
Confidence 34565555321 33444444566678999999999999877
No 72
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=80.82 E-value=1 Score=34.26 Aligned_cols=28 Identities=14% Similarity=0.239 Sum_probs=21.9
Q ss_pred HHHHHhhcCC---CeeEEeeccCCCCCceee
Q psy12524 35 DILDNAFQGY---NACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 35 ~lv~~~~~G~---~~~v~~yG~~~sGKt~t~ 62 (151)
..+..++.|. -.+++.||+.|+|||+..
T Consensus 91 ~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a 121 (267)
T 1u0j_A 91 SVFLGWATKKFGKRNTIWLFGPATTGKTNIA 121 (267)
T ss_dssp HHHHHHHTTCSTTCCEEEEECSTTSSHHHHH
T ss_pred HHHHHHHhCCCCCCcEEEEECCCCCCHHHHH
Confidence 4466777776 347999999999998766
No 73
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=80.75 E-value=0.98 Score=32.21 Aligned_cols=24 Identities=29% Similarity=0.487 Sum_probs=18.4
Q ss_pred HHHHhhcCCCeeEEeeccCCCCCcee
Q psy12524 36 ILDNAFQGYNACIFAYGQTGSGKSYT 61 (151)
Q Consensus 36 lv~~~~~G~~~~v~~yG~~~sGKt~t 61 (151)
.+..++.|.+ ++..++||||||.+
T Consensus 44 ~i~~~~~~~~--~lv~~pTGsGKT~~ 67 (224)
T 1qde_A 44 AIMPIIEGHD--VLAQAQSGTGKTGT 67 (224)
T ss_dssp HHHHHHTTCC--EEEECCTTSSHHHH
T ss_pred HHHHHhcCCC--EEEECCCCCcHHHH
Confidence 3455667765 67888999999977
No 74
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=80.58 E-value=1.2 Score=31.14 Aligned_cols=25 Identities=32% Similarity=0.464 Sum_probs=17.8
Q ss_pred HHHHhhcCCCeeEEeeccCCCCCceee
Q psy12524 36 ILDNAFQGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 36 lv~~~~~G~~~~v~~yG~~~sGKt~t~ 62 (151)
.++.+++|.+ ++..++||||||.+.
T Consensus 33 ~i~~~~~~~~--~lv~apTGsGKT~~~ 57 (206)
T 1vec_A 33 SIPIALSGRD--ILARAKNGTGKSGAY 57 (206)
T ss_dssp HHHHHHTTCC--EEEECCSSSTTHHHH
T ss_pred HHHHHccCCC--EEEECCCCCchHHHH
Confidence 3445566765 577889999999643
No 75
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=80.34 E-value=0.46 Score=35.03 Aligned_cols=26 Identities=31% Similarity=0.574 Sum_probs=18.9
Q ss_pred HHHhhcCCC--eeEEeeccCCCCCceee
Q psy12524 37 LDNAFQGYN--ACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 37 v~~~~~G~~--~~v~~yG~~~sGKt~t~ 62 (151)
++.++.|.. .+++.||+.|+|||+..
T Consensus 48 l~~~~~~iPkkn~ili~GPPGtGKTt~a 75 (212)
T 1tue_A 48 LKSFLKGTPKKNCLVFCGPANTGKSYFG 75 (212)
T ss_dssp HHHHHHTCTTCSEEEEESCGGGCHHHHH
T ss_pred HHHHHhcCCcccEEEEECCCCCCHHHHH
Confidence 344555533 36899999999999775
No 76
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=80.25 E-value=0.96 Score=34.52 Aligned_cols=39 Identities=23% Similarity=0.217 Sum_probs=25.9
Q ss_pred CCHHHHHHHHhHHHHHHhh--cCCCeeEEeeccCCCCCceee
Q psy12524 23 ASQEKVFDALGRDILDNAF--QGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 23 ~~q~~vy~~~~~~lv~~~~--~G~~~~v~~yG~~~sGKt~t~ 62 (151)
..++.+.+.. ..++..+. ......++.+|.+|+|||..+
T Consensus 32 iG~~~~~~~l-~~~l~~~~~~~~~~~~vll~G~~GtGKT~la 72 (338)
T 3pfi_A 32 IGQESIKKNL-NVFIAAAKKRNECLDHILFSGPAGLGKTTLA 72 (338)
T ss_dssp CSCHHHHHHH-HHHHHHHHHTTSCCCCEEEECSTTSSHHHHH
T ss_pred CChHHHHHHH-HHHHHHHHhcCCCCCeEEEECcCCCCHHHHH
Confidence 4555555544 34555443 234457899999999999877
No 77
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=80.10 E-value=0.68 Score=34.77 Aligned_cols=17 Identities=29% Similarity=0.440 Sum_probs=15.2
Q ss_pred eeEEeeccCCCCCceee
Q psy12524 46 ACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 46 ~~v~~yG~~~sGKt~t~ 62 (151)
..++.+|++|+|||.+.
T Consensus 48 ~~~ll~G~~GtGKt~la 64 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELA 64 (311)
T ss_dssp EEEEEESCSSSSHHHHH
T ss_pred eEEEEECCCCcCHHHHH
Confidence 57899999999999876
No 78
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=79.91 E-value=1.1 Score=31.42 Aligned_cols=24 Identities=29% Similarity=0.548 Sum_probs=17.7
Q ss_pred HHHHhhcCCCeeEEeeccCCCCCcee
Q psy12524 36 ILDNAFQGYNACIFAYGQTGSGKSYT 61 (151)
Q Consensus 36 lv~~~~~G~~~~v~~yG~~~sGKt~t 61 (151)
.+..+++|.+ ++..++||||||.+
T Consensus 31 ~i~~~~~~~~--~li~~~TGsGKT~~ 54 (207)
T 2gxq_A 31 ALPLALEGKD--LIGQARTGTGKTLA 54 (207)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHH
T ss_pred HHHHHcCCCC--EEEECCCCChHHHH
Confidence 3445666765 56778999999976
No 79
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=79.77 E-value=0.58 Score=35.08 Aligned_cols=21 Identities=24% Similarity=0.339 Sum_probs=16.8
Q ss_pred cCCCeeEEeeccCCCCCceee
Q psy12524 42 QGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 42 ~G~~~~v~~yG~~~sGKt~t~ 62 (151)
.|....++.||++|+|||.++
T Consensus 35 ~~~~~~~ll~G~~G~GKt~la 55 (319)
T 2chq_A 35 RKNIPHLLFSGPPGTGKTATA 55 (319)
T ss_dssp TTCCCCEEEESSSSSSHHHHH
T ss_pred CCCCCeEEEECcCCcCHHHHH
Confidence 455445899999999999876
No 80
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=79.45 E-value=0.77 Score=36.17 Aligned_cols=18 Identities=22% Similarity=0.536 Sum_probs=15.8
Q ss_pred CeeEEeeccCCCCCceee
Q psy12524 45 NACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 45 ~~~v~~yG~~~sGKt~t~ 62 (151)
...++.||.+|+|||+..
T Consensus 148 ~~~vLL~GppGtGKT~la 165 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLA 165 (389)
T ss_dssp CSEEEEESSTTSCHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 357899999999999877
No 81
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=78.71 E-value=1.2 Score=32.27 Aligned_cols=24 Identities=29% Similarity=0.502 Sum_probs=18.2
Q ss_pred HHHHhhcCCCeeEEeeccCCCCCcee
Q psy12524 36 ILDNAFQGYNACIFAYGQTGSGKSYT 61 (151)
Q Consensus 36 lv~~~~~G~~~~v~~yG~~~sGKt~t 61 (151)
.+..+++|.+ +++.++||||||.+
T Consensus 59 ~i~~~~~~~~--~l~~a~TGsGKT~~ 82 (245)
T 3dkp_A 59 AIPVMLHGRE--LLASAPTGSGKTLA 82 (245)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHH
T ss_pred HHHHHhCCCC--EEEECCCCCcHHHH
Confidence 3455667776 57788999999976
No 82
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=78.35 E-value=0.51 Score=34.73 Aligned_cols=18 Identities=22% Similarity=0.444 Sum_probs=15.4
Q ss_pred CeeEEeeccCCCCCceee
Q psy12524 45 NACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 45 ~~~v~~yG~~~sGKt~t~ 62 (151)
...++.+|++|+|||+.+
T Consensus 45 ~~~vll~G~~GtGKT~la 62 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLA 62 (257)
T ss_dssp CCEEEEECCTTSCHHHHH
T ss_pred CCeEEEECcCCCCHHHHH
Confidence 446899999999999876
No 83
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=78.25 E-value=1.3 Score=36.11 Aligned_cols=60 Identities=20% Similarity=0.387 Sum_probs=38.5
Q ss_pred HHHHHHhHHHHHH-hhc--CC--CeeEEeeccCCCCCceeecc--------------C---CCCCCcHHHHHHHHHHHHH
Q psy12524 27 KVFDALGRDILDN-AFQ--GY--NACIFAYGQTGSGKSYTMMG--------------S---QDNKGIIPRLCDSLFDLIA 84 (151)
Q Consensus 27 ~vy~~~~~~lv~~-~~~--G~--~~~v~~yG~~~sGKt~t~~G--------------~---~~~~Gli~~~~~~lf~~~~ 84 (151)
++-+.+..|+... .+. |. .-.++.||++|||||.+... + ....|--...++.+|....
T Consensus 192 ~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~sk~~Gese~~ir~~F~~A~ 271 (437)
T 4b4t_L 192 ELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYAK 271 (437)
T ss_dssp HHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCCSSSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhccccchHHHHHHHHHHHHHH
Confidence 3444444555422 333 33 35799999999999987622 1 1246778889999998776
Q ss_pred hh
Q psy12524 85 KQ 86 (151)
Q Consensus 85 ~~ 86 (151)
..
T Consensus 272 ~~ 273 (437)
T 4b4t_L 272 EH 273 (437)
T ss_dssp HS
T ss_pred hc
Confidence 44
No 84
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=78.08 E-value=1.3 Score=36.08 Aligned_cols=42 Identities=31% Similarity=0.572 Sum_probs=32.0
Q ss_pred CeeEEeeccCCCCCceeecc--------------C---CCCCCcHHHHHHHHHHHHHhh
Q psy12524 45 NACIFAYGQTGSGKSYTMMG--------------S---QDNKGIIPRLCDSLFDLIAKQ 86 (151)
Q Consensus 45 ~~~v~~yG~~~sGKt~t~~G--------------~---~~~~Gli~~~~~~lf~~~~~~ 86 (151)
.-.++.||+.|+|||.+... + ....|--.+.++.+|......
T Consensus 216 prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~sk~vGesek~ir~lF~~Ar~~ 274 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPRLCRQIFKVAGEN 274 (437)
T ss_dssp CSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCCSSSSHHHHHHHHHHHHHHHT
T ss_pred CCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhhccCchHHHHHHHHHHHHHhc
Confidence 45799999999999976621 1 234688899999999887644
No 85
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=77.98 E-value=3 Score=31.52 Aligned_cols=32 Identities=31% Similarity=0.342 Sum_probs=21.7
Q ss_pred HHhHHHHHHhhcC-----CCeeEEeeccCCCCCceee
Q psy12524 31 ALGRDILDNAFQG-----YNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 31 ~~~~~lv~~~~~G-----~~~~v~~yG~~~sGKt~t~ 62 (151)
..+...+...+.+ ....++..|.+|||||...
T Consensus 14 ~~~~~~~~~~l~~~~~~~~~~livl~G~sGsGKSTla 50 (287)
T 1gvn_B 14 NRLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLR 50 (287)
T ss_dssp HHHHHHHHHHHTTCCCCSSCEEEEEECCTTSCTHHHH
T ss_pred HHHHHHHHHHhccccCCCCCeEEEEECCCCCCHHHHH
Confidence 3445555565543 2456888999999998764
No 86
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=77.96 E-value=1.3 Score=36.45 Aligned_cols=42 Identities=29% Similarity=0.468 Sum_probs=31.8
Q ss_pred CeeEEeeccCCCCCceeecc--------------C---CCCCCcHHHHHHHHHHHHHhh
Q psy12524 45 NACIFAYGQTGSGKSYTMMG--------------S---QDNKGIIPRLCDSLFDLIAKQ 86 (151)
Q Consensus 45 ~~~v~~yG~~~sGKt~t~~G--------------~---~~~~Gli~~~~~~lf~~~~~~ 86 (151)
.-.++.||+.|+|||.+..- + ....|--.+.++.+|......
T Consensus 243 prGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~sk~vGesek~ir~lF~~Ar~~ 301 (467)
T 4b4t_H 243 PKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRELFEMARTK 301 (467)
T ss_dssp CSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCCCSSSHHHHHHHHHHHHHHHT
T ss_pred CCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhcccCCHHHHHHHHHHHHHHhc
Confidence 45799999999999976621 1 234688889999999887644
No 87
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=77.59 E-value=1.3 Score=33.72 Aligned_cols=27 Identities=22% Similarity=0.277 Sum_probs=19.8
Q ss_pred HHHHhhcCCCeeEEeeccCCCCCceee
Q psy12524 36 ILDNAFQGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 36 lv~~~~~G~~~~v~~yG~~~sGKt~t~ 62 (151)
.+..++.|....+++.++||||||...
T Consensus 122 ai~~il~~~~~~~l~~a~TGsGKT~a~ 148 (300)
T 3fmo_B 122 ALPLMLAEPPQNLIAQSQSGTGKTAAF 148 (300)
T ss_dssp HHHHHTSSSCCCEEEECCTTSSHHHHH
T ss_pred HHHHHHcCCCCeEEEECCCCCCccHHH
Confidence 445567774455788999999999763
No 88
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=77.43 E-value=1.7 Score=32.80 Aligned_cols=38 Identities=26% Similarity=0.332 Sum_probs=23.8
Q ss_pred CHHHHHHHHhHHHHHHhhc--CCCeeEEeeccCCCCCceee
Q psy12524 24 SQEKVFDALGRDILDNAFQ--GYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 24 ~q~~vy~~~~~~lv~~~~~--G~~~~v~~yG~~~sGKt~t~ 62 (151)
.++.+.+.. ...+..+.. +....++.+|.+|+|||..+
T Consensus 16 g~~~~~~~l-~~~l~~~~~~~~~~~~vll~G~~GtGKT~la 55 (324)
T 1hqc_A 16 GQERLKQKL-RVYLEAAKARKEPLEHLLLFGPPGLGKTTLA 55 (324)
T ss_dssp SCHHHHHHH-HHHHHHHHHHCSCCCCCEEECCTTCCCHHHH
T ss_pred CHHHHHHHH-HHHHHHHHccCCCCCcEEEECCCCCCHHHHH
Confidence 444444443 334444332 34467889999999999876
No 89
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=77.40 E-value=0.57 Score=35.93 Aligned_cols=40 Identities=33% Similarity=0.529 Sum_probs=28.1
Q ss_pred eeEEeeccCCCCCceeecc------C-----------CCCCCcHHHHHHHHHHHHHh
Q psy12524 46 ACIFAYGQTGSGKSYTMMG------S-----------QDNKGIIPRLCDSLFDLIAK 85 (151)
Q Consensus 46 ~~v~~yG~~~sGKt~t~~G------~-----------~~~~Gli~~~~~~lf~~~~~ 85 (151)
..++.||++|+|||+.+.. . ....|-....++.+|.....
T Consensus 52 ~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~ 108 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARE 108 (322)
T ss_dssp CEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHHTTTGGGHHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHhhcccchHHHHHHHHHHHHHh
Confidence 4689999999999988732 0 12345566777888876653
No 90
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=77.36 E-value=1 Score=33.73 Aligned_cols=22 Identities=23% Similarity=0.356 Sum_probs=16.9
Q ss_pred hcCCCeeEEeeccCCCCCceee
Q psy12524 41 FQGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 41 ~~G~~~~v~~yG~~~sGKt~t~ 62 (151)
-.|....++.||+.|+|||..+
T Consensus 38 ~~~~~~~~ll~G~~G~GKt~la 59 (323)
T 1sxj_B 38 KDGNMPHMIISGMPGIGKTTSV 59 (323)
T ss_dssp HSCCCCCEEEECSTTSSHHHHH
T ss_pred HcCCCCeEEEECcCCCCHHHHH
Confidence 3454344899999999999876
No 91
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=77.31 E-value=0.93 Score=33.63 Aligned_cols=25 Identities=28% Similarity=0.534 Sum_probs=18.5
Q ss_pred HHHHHhhcCCCeeEEeeccCCCCCcee
Q psy12524 35 DILDNAFQGYNACIFAYGQTGSGKSYT 61 (151)
Q Consensus 35 ~lv~~~~~G~~~~v~~yG~~~sGKt~t 61 (151)
..+..++.|.+ +++.++||||||..
T Consensus 83 ~~i~~~~~~~~--~lv~a~TGsGKT~~ 107 (262)
T 3ly5_A 83 KSIRPLLEGRD--LLAAAKTGSGKTLA 107 (262)
T ss_dssp HHHHHHHHTCC--CEECCCTTSCHHHH
T ss_pred HHHHHHhCCCc--EEEEccCCCCchHH
Confidence 34455667766 57789999999976
No 92
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=77.31 E-value=1 Score=33.85 Aligned_cols=20 Identities=45% Similarity=0.513 Sum_probs=16.3
Q ss_pred CCCeeEEeeccCCCCCceee
Q psy12524 43 GYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 43 G~~~~v~~yG~~~sGKt~t~ 62 (151)
.....+...|++|||||.++
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll 42 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTI 42 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHH
T ss_pred CCCCEEEEECCCCccHHHHH
Confidence 34456778899999999988
No 93
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=77.09 E-value=0.87 Score=34.88 Aligned_cols=20 Identities=40% Similarity=0.640 Sum_probs=16.9
Q ss_pred CCCeeEEeeccCCCCCceee
Q psy12524 43 GYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 43 G~~~~v~~yG~~~sGKt~t~ 62 (151)
+....++.+|.+|+|||..+
T Consensus 43 ~~~~~vli~G~~G~GKTtl~ 62 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVV 62 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHH
Confidence 44567899999999999887
No 94
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=76.72 E-value=0.87 Score=33.08 Aligned_cols=25 Identities=32% Similarity=0.636 Sum_probs=18.7
Q ss_pred HHHHhhcCCCeeEEeeccCCCCCceee
Q psy12524 36 ILDNAFQGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 36 lv~~~~~G~~~~v~~yG~~~sGKt~t~ 62 (151)
.+..++.|.+ ++..++||||||.+.
T Consensus 60 ai~~i~~~~~--~li~apTGsGKT~~~ 84 (237)
T 3bor_A 60 AIIPCIKGYD--VIAQAQSGTGKTATF 84 (237)
T ss_dssp HHHHHHTTCC--EEECCCSSHHHHHHH
T ss_pred HHHHHhCCCC--EEEECCCCCcHHHHH
Confidence 4455667766 577899999999763
No 95
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=76.69 E-value=0.56 Score=35.06 Aligned_cols=16 Identities=25% Similarity=0.418 Sum_probs=14.4
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
.++.+|++|+|||+.+
T Consensus 75 gvll~Gp~GtGKTtl~ 90 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLA 90 (278)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCcChHHHHH
Confidence 3899999999999887
No 96
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=76.63 E-value=1.5 Score=35.22 Aligned_cols=26 Identities=23% Similarity=0.267 Sum_probs=20.4
Q ss_pred HHHHhhcCCCeeEEeeccCCCCCcee
Q psy12524 36 ILDNAFQGYNACIFAYGQTGSGKSYT 61 (151)
Q Consensus 36 lv~~~~~G~~~~v~~yG~~~sGKt~t 61 (151)
.+..++.|.+..+++.++||||||..
T Consensus 122 ai~~il~~~~~~~l~~a~TGsGKT~~ 147 (479)
T 3fmp_B 122 ALPLMLAEPPQNLIAQSQSGTGKTAA 147 (479)
T ss_dssp HHHHHTSBSCCEEEEECCSSSSHHHH
T ss_pred HHHHHHcCCCCcEEEEcCCCCchhHH
Confidence 44556677666789999999999976
No 97
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=76.34 E-value=1.6 Score=31.47 Aligned_cols=24 Identities=33% Similarity=0.580 Sum_probs=17.8
Q ss_pred HHHHhhcCCCeeEEeeccCCCCCcee
Q psy12524 36 ILDNAFQGYNACIFAYGQTGSGKSYT 61 (151)
Q Consensus 36 lv~~~~~G~~~~v~~yG~~~sGKt~t 61 (151)
.+..+++|.+ ++..++||||||..
T Consensus 55 ~i~~~~~~~~--~li~a~TGsGKT~~ 78 (236)
T 2pl3_A 55 TIGLALQGKD--VLGAAKTGSGKTLA 78 (236)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHH
T ss_pred HHHHHhCCCC--EEEEeCCCCcHHHH
Confidence 3455667766 46778999999975
No 98
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=76.16 E-value=1.3 Score=32.22 Aligned_cols=24 Identities=29% Similarity=0.447 Sum_probs=16.5
Q ss_pred HHHhhcCCCeeEEeeccCCCCCceee
Q psy12524 37 LDNAFQGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 37 v~~~~~G~~~~v~~yG~~~sGKt~t~ 62 (151)
+..+..|. .++..|.||||||..+
T Consensus 70 i~~i~~g~--~~~i~g~TGsGKTt~~ 93 (235)
T 3llm_A 70 LEAISQNS--VVIIRGATGCGKTTQV 93 (235)
T ss_dssp HHHHHHCS--EEEEECCTTSSHHHHH
T ss_pred HHHHhcCC--EEEEEeCCCCCcHHhH
Confidence 33444454 4578899999999644
No 99
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=75.73 E-value=0.67 Score=35.71 Aligned_cols=39 Identities=33% Similarity=0.514 Sum_probs=27.3
Q ss_pred eeEEeeccCCCCCceeec-------cC-----------CCCCCcHHHHHHHHHHHHH
Q psy12524 46 ACIFAYGQTGSGKSYTMM-------GS-----------QDNKGIIPRLCDSLFDLIA 84 (151)
Q Consensus 46 ~~v~~yG~~~sGKt~t~~-------G~-----------~~~~Gli~~~~~~lf~~~~ 84 (151)
..++.||++|+|||+.+. +. ....|-....++.+|....
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~~~~g~~~~~~~~lf~~a~ 102 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLAR 102 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCCSSCCSCHHHHHHHHHHHH
T ss_pred ceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHHhhhhhHHHHHHHHHHHHHH
Confidence 468999999999998762 21 0124556777888887665
No 100
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=75.68 E-value=1.6 Score=31.19 Aligned_cols=25 Identities=28% Similarity=0.430 Sum_probs=17.9
Q ss_pred HHHHhhcCCCeeEEeeccCCCCCceee
Q psy12524 36 ILDNAFQGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 36 lv~~~~~G~~~~v~~yG~~~sGKt~t~ 62 (151)
.+..+++|.+. +..++||||||...
T Consensus 50 ~i~~~~~~~~~--l~~apTGsGKT~~~ 74 (228)
T 3iuy_A 50 AWPIILQGIDL--IVVAQTGTGKTLSY 74 (228)
T ss_dssp HHHHHHTTCCE--EEECCTTSCHHHHH
T ss_pred HHHHHhCCCCE--EEECCCCChHHHHH
Confidence 34456677664 67789999999753
No 101
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=75.64 E-value=0.8 Score=34.97 Aligned_cols=16 Identities=25% Similarity=0.393 Sum_probs=14.4
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
.++.||.+|+|||+.+
T Consensus 48 ~vll~G~pGtGKT~la 63 (331)
T 2r44_A 48 HILLEGVPGLAKTLSV 63 (331)
T ss_dssp CEEEESCCCHHHHHHH
T ss_pred eEEEECCCCCcHHHHH
Confidence 5788999999999877
No 102
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=75.64 E-value=0.62 Score=37.63 Aligned_cols=18 Identities=33% Similarity=0.606 Sum_probs=15.9
Q ss_pred CeeEEeeccCCCCCceee
Q psy12524 45 NACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 45 ~~~v~~yG~~~sGKt~t~ 62 (151)
...++.||++|+|||+.+
T Consensus 130 ~~~lll~Gp~G~GKTtLa 147 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLL 147 (440)
T ss_dssp SCCEEEECSSSSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 446899999999999988
No 103
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=75.21 E-value=1.5 Score=34.08 Aligned_cols=25 Identities=20% Similarity=0.396 Sum_probs=19.5
Q ss_pred HHhhcC---CCeeEEe--eccCCCCCceee
Q psy12524 38 DNAFQG---YNACIFA--YGQTGSGKSYTM 62 (151)
Q Consensus 38 ~~~~~G---~~~~v~~--yG~~~sGKt~t~ 62 (151)
..+..| ....++. +|..|+|||..+
T Consensus 40 ~~~~~~~~~~~~~~li~i~G~~G~GKT~L~ 69 (412)
T 1w5s_A 40 NRLLSGAGLSDVNMIYGSIGRVGIGKTTLA 69 (412)
T ss_dssp HHHHTSSCBCCEEEEEECTTCCSSSHHHHH
T ss_pred HHHhcCCCCCCCEEEEeCcCcCCCCHHHHH
Confidence 555555 5567888 999999999876
No 104
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=75.07 E-value=1.7 Score=35.08 Aligned_cols=35 Identities=14% Similarity=0.212 Sum_probs=22.8
Q ss_pred CCHHHHHHHHhHHHHHHhhcCCCeeEEeeccCCCCCceee
Q psy12524 23 ASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 23 ~~q~~vy~~~~~~lv~~~~~G~~~~v~~yG~~~sGKt~t~ 62 (151)
..|.+.....+ ..+.++. ..++..|..|||||+++
T Consensus 28 ~~Q~~av~~~~----~~i~~~~-~~~li~G~aGTGKT~ll 62 (459)
T 3upu_A 28 EGQKNAFNIVM----KAIKEKK-HHVTINGPAGTGATTLT 62 (459)
T ss_dssp HHHHHHHHHHH----HHHHSSS-CEEEEECCTTSCHHHHH
T ss_pred HHHHHHHHHHH----HHHhcCC-CEEEEEeCCCCCHHHHH
Confidence 34555554442 3333333 37889999999999877
No 105
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=74.82 E-value=1.8 Score=31.53 Aligned_cols=25 Identities=32% Similarity=0.484 Sum_probs=18.0
Q ss_pred HHHHhhcCCCeeEEeeccCCCCCceee
Q psy12524 36 ILDNAFQGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 36 lv~~~~~G~~~~v~~yG~~~sGKt~t~ 62 (151)
.+..+++|.+ ++..++||||||...
T Consensus 53 ~i~~i~~~~~--~l~~a~TGsGKT~~~ 77 (253)
T 1wrb_A 53 AIPAILEHRD--IMACAQTGSGKTAAF 77 (253)
T ss_dssp HHHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHHhCCCC--EEEECCCCChHHHHH
Confidence 3455667766 466789999999753
No 106
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=74.71 E-value=1.8 Score=30.65 Aligned_cols=25 Identities=20% Similarity=0.473 Sum_probs=18.2
Q ss_pred HHHHhhcCCCeeEEeeccCCCCCceee
Q psy12524 36 ILDNAFQGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 36 lv~~~~~G~~~~v~~yG~~~sGKt~t~ 62 (151)
.+..+++|.+ ++..++||+|||.+.
T Consensus 44 ~i~~~~~~~~--~li~~~TGsGKT~~~ 68 (220)
T 1t6n_A 44 CIPQAILGMD--VLCQAKSGMGKTAVF 68 (220)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHhCCCC--EEEECCCCCchhhhh
Confidence 4455667766 567779999999754
No 107
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=74.61 E-value=2 Score=33.26 Aligned_cols=26 Identities=31% Similarity=0.606 Sum_probs=19.8
Q ss_pred HHHHHhhcCCCeeEEeeccCCCCCceee
Q psy12524 35 DILDNAFQGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 35 ~lv~~~~~G~~~~v~~yG~~~sGKt~t~ 62 (151)
..+..++.|.+ ++..++||||||...
T Consensus 69 ~~i~~~~~~~~--~lv~a~TGsGKT~~~ 94 (414)
T 3eiq_A 69 RAILPCIKGYD--VIAQAQSGTGKTATF 94 (414)
T ss_dssp HHHHHHHTTCC--EEECCCSCSSSHHHH
T ss_pred HHhHHHhCCCC--EEEECCCCCcccHHH
Confidence 34556777877 577899999999763
No 108
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=74.36 E-value=1.9 Score=31.80 Aligned_cols=18 Identities=33% Similarity=0.475 Sum_probs=14.4
Q ss_pred CeeEEeeccCCCCCceee
Q psy12524 45 NACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 45 ~~~v~~yG~~~sGKt~t~ 62 (151)
...++..|.+|||||...
T Consensus 32 ~~~i~l~G~~GsGKSTla 49 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIH 49 (253)
T ss_dssp CEEEEEESCGGGTTHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 346788899999998654
No 109
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=73.84 E-value=1.9 Score=33.37 Aligned_cols=27 Identities=22% Similarity=0.277 Sum_probs=20.3
Q ss_pred HHHHhhcCCCeeEEeeccCCCCCceee
Q psy12524 36 ILDNAFQGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 36 lv~~~~~G~~~~v~~yG~~~sGKt~t~ 62 (151)
.+..++.|.+..++..++||||||...
T Consensus 55 ~i~~~~~~~~~~~lv~apTGsGKT~~~ 81 (412)
T 3fht_A 55 ALPLMLAEPPQNLIAQSQSGTGKTAAF 81 (412)
T ss_dssp HHHHHHSSSCCCEEEECCTTSCHHHHH
T ss_pred HHHHHhcCCCCeEEEECCCCchHHHHH
Confidence 455667775556788899999999863
No 110
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=73.38 E-value=2.9 Score=35.90 Aligned_cols=29 Identities=14% Similarity=0.172 Sum_probs=21.1
Q ss_pred HHHHHhhcCCCeeEEeeccCCCCCceeec
Q psy12524 35 DILDNAFQGYNACIFAYGQTGSGKSYTMM 63 (151)
Q Consensus 35 ~lv~~~~~G~~~~v~~yG~~~sGKt~t~~ 63 (151)
.+++.+..+....++.+|.+|+|||....
T Consensus 191 ~l~~~l~~~~~~~vLL~G~pGtGKT~la~ 219 (758)
T 3pxi_A 191 RVIEVLSRRTKNNPVLIGEPGVGKTAIAE 219 (758)
T ss_dssp HHHHHHHCSSSCEEEEESCTTTTTHHHHH
T ss_pred HHHHHHhCCCCCCeEEECCCCCCHHHHHH
Confidence 34444444566678999999999998874
No 111
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=72.72 E-value=1.9 Score=33.09 Aligned_cols=36 Identities=28% Similarity=0.352 Sum_probs=22.6
Q ss_pred CCHHHHHHHHhHHHHHHhhcCC-CeeEEeeccCCCCCceee
Q psy12524 23 ASQEKVFDALGRDILDNAFQGY-NACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 23 ~~q~~vy~~~~~~lv~~~~~G~-~~~v~~yG~~~sGKt~t~ 62 (151)
..++.+.+.. ...+-.|. ...++.+|+.|+|||.++
T Consensus 19 vg~~~~~~~L----~~~l~~~~~~~~~ll~G~~G~GKT~la 55 (373)
T 1jr3_A 19 VGQEHVLTAL----ANGLSLGRIHHAYLFSGTRGVGKTSIA 55 (373)
T ss_dssp CSCHHHHHHH----HHHHHHTCCCSEEEEESCTTSSHHHHH
T ss_pred cCcHHHHHHH----HHHHHhCCCCeEEEEECCCCCCHHHHH
Confidence 4455555433 22222333 346789999999999887
No 112
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=72.72 E-value=0.8 Score=34.50 Aligned_cols=37 Identities=22% Similarity=0.332 Sum_probs=24.8
Q ss_pred EEeeccCCCCCceeec--------------cCC---CCCCcHHHHHHHHHHHHH
Q psy12524 48 IFAYGQTGSGKSYTMM--------------GSQ---DNKGIIPRLCDSLFDLIA 84 (151)
Q Consensus 48 v~~yG~~~sGKt~t~~--------------G~~---~~~Gli~~~~~~lf~~~~ 84 (151)
++.+|++|+|||..+. |.. ...|-..+.+..+|+...
T Consensus 47 vlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~ 100 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGESERAVRQVFQRAK 100 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSSTTHHHHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhhhhhHHHHHHHHHHHHHH
Confidence 8999999999998762 111 123445566778887653
No 113
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=72.62 E-value=1.5 Score=31.44 Aligned_cols=28 Identities=25% Similarity=0.379 Sum_probs=20.2
Q ss_pred HHHHHhhc-CC--CeeEEeeccCCCCCceee
Q psy12524 35 DILDNAFQ-GY--NACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 35 ~lv~~~~~-G~--~~~v~~yG~~~sGKt~t~ 62 (151)
+-++.++. |. ...+..+|.+|+|||..+
T Consensus 11 ~~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~ 41 (243)
T 1n0w_A 11 KELDKLLQGGIETGSITEMFGEFRTGKTQIC 41 (243)
T ss_dssp HHHHHHTTTSEETTSEEEEECCTTSSHHHHH
T ss_pred hHHHHhhcCCCcCCeEEEEECCCCCcHHHHH
Confidence 44566664 32 446778899999999876
No 114
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=72.55 E-value=1.7 Score=37.29 Aligned_cols=29 Identities=14% Similarity=0.164 Sum_probs=20.8
Q ss_pred HHHHHhhcCCCeeEEeeccCCCCCceeec
Q psy12524 35 DILDNAFQGYNACIFAYGQTGSGKSYTMM 63 (151)
Q Consensus 35 ~lv~~~~~G~~~~v~~yG~~~sGKt~t~~ 63 (151)
.+++.+.......++.+|.+|+|||..+.
T Consensus 197 ~l~~~l~~~~~~~vlL~G~~GtGKT~la~ 225 (758)
T 1r6b_X 197 RAIQVLCRRRKNNPLLVGESGVGKTAIAE 225 (758)
T ss_dssp HHHHHHTSSSSCEEEEECCTTSSHHHHHH
T ss_pred HHHHHHhccCCCCeEEEcCCCCCHHHHHH
Confidence 34444444556678899999999998773
No 115
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=72.51 E-value=1.1 Score=34.33 Aligned_cols=20 Identities=25% Similarity=0.426 Sum_probs=15.8
Q ss_pred CCCeeEEeeccCCCCCceee
Q psy12524 43 GYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 43 G~~~~v~~yG~~~sGKt~t~ 62 (151)
|....++.+|++|+|||.++
T Consensus 34 ~~~~~~ll~Gp~G~GKTtl~ 53 (354)
T 1sxj_E 34 RDLPHLLLYGPNGTGKKTRC 53 (354)
T ss_dssp TCCCCEEEECSTTSSHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHH
Confidence 43333888999999999987
No 116
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=72.50 E-value=2.1 Score=32.73 Aligned_cols=27 Identities=22% Similarity=0.294 Sum_probs=19.8
Q ss_pred HHHHhhcCCCeeEEeeccCCCCCceee
Q psy12524 36 ILDNAFQGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 36 lv~~~~~G~~~~v~~yG~~~sGKt~t~ 62 (151)
.++.++.|....++..++||||||...
T Consensus 35 ~i~~~~~~~~~~~lv~a~TGsGKT~~~ 61 (395)
T 3pey_A 35 ALPLLLHNPPRNMIAQSQSGTGKTAAF 61 (395)
T ss_dssp HHHHHHCSSCCCEEEECCTTSCHHHHH
T ss_pred HHHHHHcCCCCeEEEECCCCCcHHHHH
Confidence 445667774456788899999999753
No 117
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=72.42 E-value=2.2 Score=31.28 Aligned_cols=25 Identities=36% Similarity=0.546 Sum_probs=17.8
Q ss_pred HHHHhhcCCCeeEEeeccCCCCCceee
Q psy12524 36 ILDNAFQGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 36 lv~~~~~G~~~~v~~yG~~~sGKt~t~ 62 (151)
.+..+++|.+ ++..++||||||...
T Consensus 73 ~i~~i~~~~~--~lv~a~TGsGKT~~~ 97 (249)
T 3ber_A 73 AIPLALQGRD--IIGLAETGSGKTGAF 97 (249)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHhCCCC--EEEEcCCCCCchhHh
Confidence 3445667766 566779999999763
No 118
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=72.27 E-value=0.79 Score=32.22 Aligned_cols=24 Identities=38% Similarity=0.451 Sum_probs=17.5
Q ss_pred HHHhhcCCCeeEEeeccCCCCCceee
Q psy12524 37 LDNAFQGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 37 v~~~~~G~~~~v~~yG~~~sGKt~t~ 62 (151)
++.+++|.+ ++..++||+|||...
T Consensus 42 i~~~~~~~~--~li~~~tGsGKT~~~ 65 (216)
T 3b6e_A 42 AQPALEGKN--IIICLPTGSGKTRVA 65 (216)
T ss_dssp HHHHHTTCC--EEEECSCHHHHHHHH
T ss_pred HHHHhcCCC--EEEEcCCCCCHHHHH
Confidence 344555655 577899999999876
No 119
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=72.17 E-value=0.85 Score=35.21 Aligned_cols=17 Identities=24% Similarity=0.364 Sum_probs=14.5
Q ss_pred eeEEeeccCCCCCceee
Q psy12524 46 ACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 46 ~~v~~yG~~~sGKt~t~ 62 (151)
..++.||++|+|||+.+
T Consensus 52 ~~~ll~Gp~G~GKTTLa 68 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLA 68 (334)
T ss_dssp CCEEEESSTTSSHHHHH
T ss_pred CeEEEECCCCCcHHHHH
Confidence 45778999999999876
No 120
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=72.16 E-value=2.5 Score=30.03 Aligned_cols=29 Identities=24% Similarity=0.222 Sum_probs=19.0
Q ss_pred HHHHHHhhc--CCCeeEEeeccCCCCCceee
Q psy12524 34 RDILDNAFQ--GYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 34 ~~lv~~~~~--G~~~~v~~yG~~~sGKt~t~ 62 (151)
..+++.+.. .....+...|.+|||||..+
T Consensus 9 ~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~ 39 (208)
T 3c8u_A 9 QGVLERLDPRQPGRQLVALSGAPGSGKSTLS 39 (208)
T ss_dssp HHHHHHSCTTCCSCEEEEEECCTTSCTHHHH
T ss_pred HHHHHHHHhcCCCCeEEEEECCCCCCHHHHH
Confidence 444455443 33445667799999999766
No 121
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=71.96 E-value=2.6 Score=29.80 Aligned_cols=29 Identities=14% Similarity=0.039 Sum_probs=19.2
Q ss_pred HHHHHHhhc---CCCeeEEeeccCCCCCceee
Q psy12524 34 RDILDNAFQ---GYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 34 ~~lv~~~~~---G~~~~v~~yG~~~sGKt~t~ 62 (151)
..+++.+.. .....+...|.+|||||..+
T Consensus 8 ~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~ 39 (201)
T 1rz3_A 8 DFLCKTILAIKTAGRLVLGIDGLSRSGKTTLA 39 (201)
T ss_dssp HHHHHHHHTSCCSSSEEEEEEECTTSSHHHHH
T ss_pred HHHHHHHHHhccCCCeEEEEECCCCCCHHHHH
Confidence 344444443 33456777899999999865
No 122
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=71.57 E-value=2.4 Score=30.42 Aligned_cols=24 Identities=17% Similarity=0.371 Sum_probs=17.5
Q ss_pred HHHHhhcCCCeeEEeeccCCCCCcee
Q psy12524 36 ILDNAFQGYNACIFAYGQTGSGKSYT 61 (151)
Q Consensus 36 lv~~~~~G~~~~v~~yG~~~sGKt~t 61 (151)
.+..+++|.+ ++..++||||||..
T Consensus 54 ~i~~~~~~~~--~l~~a~TGsGKT~~ 77 (230)
T 2oxc_A 54 AIPLGRCGLD--LIVQAKSGTGKTCV 77 (230)
T ss_dssp HHHHHHTTCC--EEEECCTTSSHHHH
T ss_pred HHHHHhCCCC--EEEECCCCCcHHHH
Confidence 3445667766 46677999999976
No 123
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=71.52 E-value=2.2 Score=32.54 Aligned_cols=20 Identities=25% Similarity=0.486 Sum_probs=16.7
Q ss_pred CCCeeEEeeccCCCCCceee
Q psy12524 43 GYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 43 G~~~~v~~yG~~~sGKt~t~ 62 (151)
..+..++.+|.+|+|||+..
T Consensus 23 ~~~~~vLi~Ge~GtGKt~lA 42 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELVA 42 (304)
T ss_dssp STTSCEEEESCTTSCHHHHH
T ss_pred CCCCcEEEECCCCchHHHHH
Confidence 44667899999999999876
No 124
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=71.27 E-value=2.1 Score=31.09 Aligned_cols=25 Identities=32% Similarity=0.417 Sum_probs=17.7
Q ss_pred HHHHhhcCCCeeEEeeccCCCCCceee
Q psy12524 36 ILDNAFQGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 36 lv~~~~~G~~~~v~~yG~~~sGKt~t~ 62 (151)
.+..+++|.+. ++.++||||||...
T Consensus 59 ~i~~~~~g~~~--l~~apTGsGKT~~~ 83 (242)
T 3fe2_A 59 GWPVALSGLDM--VGVAQTGSGKTLSY 83 (242)
T ss_dssp HHHHHHHTCCE--EEEECTTSCHHHHH
T ss_pred HHHHHhCCCCE--EEECCCcCHHHHHH
Confidence 34456677664 56679999999773
No 125
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=71.24 E-value=1.4 Score=37.29 Aligned_cols=24 Identities=25% Similarity=0.267 Sum_probs=16.8
Q ss_pred HHhhcCCCeeEEeeccCCCCCceee
Q psy12524 38 DNAFQGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 38 ~~~~~G~~~~v~~yG~~~sGKt~t~ 62 (151)
..++.... ..+..|+.|||||+|+
T Consensus 199 ~~al~~~~-~~lI~GPPGTGKT~ti 222 (646)
T 4b3f_X 199 LFALSQKE-LAIIHGPPGTGKTTTV 222 (646)
T ss_dssp HHHHHCSS-EEEEECCTTSCHHHHH
T ss_pred HHHhcCCC-ceEEECCCCCCHHHHH
Confidence 34443333 3467899999999997
No 126
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=70.68 E-value=2.9 Score=36.07 Aligned_cols=21 Identities=29% Similarity=0.608 Sum_probs=19.3
Q ss_pred cCCCeeEEeeccCCCCCceee
Q psy12524 42 QGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 42 ~G~~~~v~~yG~~~sGKt~t~ 62 (151)
++.|.||+.-|.+|||||.+.
T Consensus 91 ~~~nQsIiisGESGAGKTe~t 111 (697)
T 1lkx_A 91 SQENQCVIISGESGAGKTEAS 111 (697)
T ss_dssp HCCCEEEEEECSTTSSHHHHH
T ss_pred cCCCcEEEecCCCCCCchhhH
Confidence 589999999999999999775
No 127
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=70.33 E-value=1.1 Score=31.06 Aligned_cols=18 Identities=33% Similarity=0.442 Sum_probs=14.9
Q ss_pred eeEEeeccCCCCCceeec
Q psy12524 46 ACIFAYGQTGSGKSYTMM 63 (151)
Q Consensus 46 ~~v~~yG~~~sGKt~t~~ 63 (151)
..+...|.+|||||..+.
T Consensus 10 ei~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAK 27 (171)
T ss_dssp EEEEEECCTTSCHHHHHH
T ss_pred EEEEEECCCCCCHHHHHH
Confidence 356678999999999885
No 128
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=70.03 E-value=0.98 Score=35.27 Aligned_cols=17 Identities=47% Similarity=0.864 Sum_probs=14.8
Q ss_pred eeEEeeccCCCCCceee
Q psy12524 46 ACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 46 ~~v~~yG~~~sGKt~t~ 62 (151)
..++.||++|+|||+.+
T Consensus 85 ~~iLL~GppGtGKT~la 101 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLA 101 (355)
T ss_dssp CCEEEECSTTSCHHHHH
T ss_pred ceEEEECCCCCcHHHHH
Confidence 35889999999999876
No 129
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=69.97 E-value=1.3 Score=34.91 Aligned_cols=28 Identities=36% Similarity=0.373 Sum_probs=20.1
Q ss_pred HHHHHhhcCCCeeEEeeccCCCCCceee
Q psy12524 35 DILDNAFQGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 35 ~lv~~~~~G~~~~v~~yG~~~sGKt~t~ 62 (151)
+.+..+.-.....+...|++|||||.++
T Consensus 126 ~~l~~l~~~~g~~i~ivG~~GsGKTTll 153 (372)
T 2ewv_A 126 DKVLELCHRKMGLILVTGPTGSGKSTTI 153 (372)
T ss_dssp SSHHHHTTSSSEEEEEECSSSSSHHHHH
T ss_pred HHHHHHhhcCCCEEEEECCCCCCHHHHH
Confidence 3344443344557888999999999988
No 130
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=69.07 E-value=3.2 Score=33.95 Aligned_cols=26 Identities=19% Similarity=0.429 Sum_probs=19.6
Q ss_pred HHHHhhcCCCeeEEeeccCCCCCcee
Q psy12524 36 ILDNAFQGYNACIFAYGQTGSGKSYT 61 (151)
Q Consensus 36 lv~~~~~G~~~~v~~yG~~~sGKt~t 61 (151)
.++.++.|....+++.++||||||..
T Consensus 102 ~i~~~l~~~~~~~lv~apTGsGKTl~ 127 (563)
T 3i5x_A 102 TIKPILSSEDHDVIARAKTGTGKTFA 127 (563)
T ss_dssp HHHHHHSSSSEEEEEECCTTSCHHHH
T ss_pred HHHHHhcCCCCeEEEECCCCCCccHH
Confidence 44556655556778899999999975
No 131
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=69.01 E-value=3.3 Score=36.16 Aligned_cols=21 Identities=24% Similarity=0.477 Sum_probs=19.3
Q ss_pred cCCCeeEEeeccCCCCCceee
Q psy12524 42 QGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 42 ~G~~~~v~~yG~~~sGKt~t~ 62 (151)
++.|.||+.-|.+|+|||.+.
T Consensus 169 ~~~nQsIiisGESGAGKTe~t 189 (770)
T 1w9i_A 169 DRQNQSLLITGESGAGKTENT 189 (770)
T ss_dssp HCCCEEEEEECSTTSSHHHHH
T ss_pred hcCCcEEEEecCCCCcchHHH
Confidence 589999999999999999775
No 132
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=68.98 E-value=1.1 Score=34.91 Aligned_cols=18 Identities=39% Similarity=0.591 Sum_probs=15.5
Q ss_pred CeeEEeeccCCCCCceee
Q psy12524 45 NACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 45 ~~~v~~yG~~~sGKt~t~ 62 (151)
...++.+|.+|+|||++.
T Consensus 72 ~~~ill~Gp~GtGKT~la 89 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMA 89 (376)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCCEEEECCCCCCHHHHH
Confidence 456899999999999876
No 133
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=68.89 E-value=2.8 Score=32.51 Aligned_cols=25 Identities=28% Similarity=0.569 Sum_probs=18.6
Q ss_pred HHHHhhcCCCeeEEeeccCCCCCceee
Q psy12524 36 ILDNAFQGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 36 lv~~~~~G~~~~v~~yG~~~sGKt~t~ 62 (151)
.+..++.|.+ ++..++||||||...
T Consensus 67 ai~~i~~~~~--~lv~a~TGsGKT~~~ 91 (410)
T 2j0s_A 67 AIKQIIKGRD--VIAQSQSGTGKTATF 91 (410)
T ss_dssp HHHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHHhCCCC--EEEECCCCCCchHHH
Confidence 4455677876 567789999999653
No 134
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=68.61 E-value=2.5 Score=34.94 Aligned_cols=19 Identities=32% Similarity=0.588 Sum_probs=15.5
Q ss_pred cCCCeeEEeeccCCCCCceee
Q psy12524 42 QGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 42 ~G~~~~v~~yG~~~sGKt~t~ 62 (151)
.|.+ +...|+||||||.++
T Consensus 259 ~g~~--i~I~GptGSGKTTlL 277 (511)
T 2oap_1 259 HKFS--AIVVGETASGKTTTL 277 (511)
T ss_dssp TTCC--EEEEESTTSSHHHHH
T ss_pred CCCE--EEEECCCCCCHHHHH
Confidence 4554 678899999999887
No 135
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=68.44 E-value=3.4 Score=36.12 Aligned_cols=21 Identities=24% Similarity=0.434 Sum_probs=19.1
Q ss_pred cCCCeeEEeeccCCCCCceee
Q psy12524 42 QGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 42 ~G~~~~v~~yG~~~sGKt~t~ 62 (151)
.+.|.||+.-|.+|||||.+.
T Consensus 137 ~~~nQsIiiSGESGAGKTe~t 157 (784)
T 2v26_A 137 LKLSQSIIVSGESGAGKTENT 157 (784)
T ss_dssp HTCCEEEEEECSTTSSHHHHH
T ss_pred cCCCcEEEEcCCCCCCceehH
Confidence 589999999999999999765
No 136
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=68.19 E-value=1.7 Score=30.88 Aligned_cols=23 Identities=30% Similarity=0.551 Sum_probs=17.0
Q ss_pred HHHhhcCCCeeEEeeccCCCCCcee
Q psy12524 37 LDNAFQGYNACIFAYGQTGSGKSYT 61 (151)
Q Consensus 37 v~~~~~G~~~~v~~yG~~~sGKt~t 61 (151)
++.+++|.+ ++..++||||||..
T Consensus 35 i~~~~~~~~--~lv~a~TGsGKT~~ 57 (219)
T 1q0u_A 35 IPGALRGES--MVGQSQTGTGKTHA 57 (219)
T ss_dssp HHHHHHTCC--EEEECCSSHHHHHH
T ss_pred HHHHhCCCC--EEEECCCCChHHHH
Confidence 445566765 46778999999986
No 137
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=68.13 E-value=1.7 Score=37.98 Aligned_cols=30 Identities=17% Similarity=0.271 Sum_probs=21.2
Q ss_pred HHHHHHhhcCCCeeEEeeccCCCCCceeec
Q psy12524 34 RDILDNAFQGYNACIFAYGQTGSGKSYTMM 63 (151)
Q Consensus 34 ~~lv~~~~~G~~~~v~~yG~~~sGKt~t~~ 63 (151)
..+++.+..+....++.+|.+|+|||..+.
T Consensus 180 ~~l~~~l~~~~~~~vlL~G~pG~GKT~la~ 209 (854)
T 1qvr_A 180 RRVIQILLRRTKNNPVLIGEPGVGKTAIVE 209 (854)
T ss_dssp HHHHHHHHCSSCCCCEEEECTTSCHHHHHH
T ss_pred HHHHHHHhcCCCCceEEEcCCCCCHHHHHH
Confidence 334444445555567899999999998873
No 138
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=68.01 E-value=2.5 Score=30.53 Aligned_cols=25 Identities=32% Similarity=0.526 Sum_probs=17.4
Q ss_pred HHHHhhcCCCeeEEeeccCCCCCceee
Q psy12524 36 ILDNAFQGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 36 lv~~~~~G~~~~v~~yG~~~sGKt~t~ 62 (151)
.++.+-.|.- +...|++|||||..+
T Consensus 15 ~l~~i~~Ge~--~~liG~nGsGKSTLl 39 (208)
T 3b85_A 15 YVDAIDTNTI--VFGLGPAGSGKTYLA 39 (208)
T ss_dssp HHHHHHHCSE--EEEECCTTSSTTHHH
T ss_pred HHHhccCCCE--EEEECCCCCCHHHHH
Confidence 4445544544 445799999999888
No 139
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=67.94 E-value=2.3 Score=34.93 Aligned_cols=20 Identities=30% Similarity=0.492 Sum_probs=16.7
Q ss_pred CCCeeEEeeccCCCCCceee
Q psy12524 43 GYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 43 G~~~~v~~yG~~~sGKt~t~ 62 (151)
.....++.||.+|+|||+..
T Consensus 236 ~~~~~vLL~GppGtGKT~lA 255 (489)
T 3hu3_A 236 KPPRGILLYGPPGTGKTLIA 255 (489)
T ss_dssp CCCCEEEEECSTTSSHHHHH
T ss_pred CCCCcEEEECcCCCCHHHHH
Confidence 34557999999999999877
No 140
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=67.66 E-value=2.7 Score=34.74 Aligned_cols=28 Identities=21% Similarity=0.336 Sum_probs=18.5
Q ss_pred HHHHHHhhcCCCeeEEeeccCCCCCceee
Q psy12524 34 RDILDNAFQGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 34 ~~lv~~~~~G~~~~v~~yG~~~sGKt~t~ 62 (151)
..+++.+..|.... +..+.||||||.++
T Consensus 188 ~~~~~~~~~~~~~~-ll~~~TGsGKT~~~ 215 (590)
T 3h1t_A 188 NRAVQSVLQGKKRS-LITMATGTGKTVVA 215 (590)
T ss_dssp HHHHHHHHTTCSEE-EEEECTTSCHHHHH
T ss_pred HHHHHHHhcCCCce-EEEecCCCChHHHH
Confidence 34444455565544 44489999999987
No 141
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=67.15 E-value=2.1 Score=30.22 Aligned_cols=27 Identities=30% Similarity=0.390 Sum_probs=18.4
Q ss_pred HHHHhhc-CC--CeeEEeeccCCCCCceee
Q psy12524 36 ILDNAFQ-GY--NACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 36 lv~~~~~-G~--~~~v~~yG~~~sGKt~t~ 62 (151)
-++.++. |. ...+..+|.+|+|||..+
T Consensus 11 ~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~ 40 (235)
T 2w0m_A 11 DFDKLIQGGIPQGFFIALTGEPGTGKTIFS 40 (235)
T ss_dssp HHHGGGTTSEETTCEEEEECSTTSSHHHHH
T ss_pred HHHHHhcCCCcCCCEEEEEcCCCCCHHHHH
Confidence 3455554 33 335667899999999876
No 142
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=66.92 E-value=2.3 Score=31.12 Aligned_cols=24 Identities=25% Similarity=0.146 Sum_probs=17.3
Q ss_pred HHhhcCCCeeEEeeccCCCCCceeec
Q psy12524 38 DNAFQGYNACIFAYGQTGSGKSYTMM 63 (151)
Q Consensus 38 ~~~~~G~~~~v~~yG~~~sGKt~t~~ 63 (151)
..++.+.+ ++..|.+|+|||....
T Consensus 103 ~~~~~~~~--~ll~~~tG~GKT~~a~ 126 (237)
T 2fz4_A 103 ERWLVDKR--GCIVLPTGSGKTHVAM 126 (237)
T ss_dssp HHHTTTSE--EEEEESSSTTHHHHHH
T ss_pred HHHHhCCC--EEEEeCCCCCHHHHHH
Confidence 34555544 6677899999998863
No 143
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*
Probab=66.74 E-value=3.9 Score=35.78 Aligned_cols=21 Identities=29% Similarity=0.506 Sum_probs=19.2
Q ss_pred cCCCeeEEeeccCCCCCceee
Q psy12524 42 QGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 42 ~G~~~~v~~yG~~~sGKt~t~ 62 (151)
.+.|.||+.-|.+|+|||.+.
T Consensus 168 ~~~nQsIiiSGESGAGKTe~t 188 (783)
T 4db1_A 168 DRENQSILITGESGAGKTVNT 188 (783)
T ss_dssp HTCCEEEEEECSTTSSHHHHH
T ss_pred hCCCceEEEeCCCCCCCchHH
Confidence 589999999999999999765
No 144
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=66.70 E-value=3.9 Score=35.84 Aligned_cols=21 Identities=29% Similarity=0.536 Sum_probs=19.1
Q ss_pred cCCCeeEEeeccCCCCCceee
Q psy12524 42 QGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 42 ~G~~~~v~~yG~~~sGKt~t~ 62 (151)
++.|.||+.-|.+|+|||.+.
T Consensus 153 ~~~nQsIiisGESGAGKTe~t 173 (795)
T 1w7j_A 153 DERNQSIIVSGESGAGKTVSA 173 (795)
T ss_dssp HTCCEEEEEECSTTSSHHHHH
T ss_pred cCCCeEEEEeCCCCCCcchHH
Confidence 589999999999999999765
No 145
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=66.70 E-value=3 Score=32.16 Aligned_cols=25 Identities=28% Similarity=0.507 Sum_probs=18.0
Q ss_pred HHHHhhcCCCeeEEeeccCCCCCceee
Q psy12524 36 ILDNAFQGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 36 lv~~~~~G~~~~v~~yG~~~sGKt~t~ 62 (151)
.++.++.|.+ ++..++||||||...
T Consensus 51 ~i~~i~~~~~--~li~a~TGsGKT~~~ 75 (400)
T 1s2m_A 51 AIPVAITGRD--ILARAKNGTGKTAAF 75 (400)
T ss_dssp HHHHHHHTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHhcCCC--EEEECCCCcHHHHHH
Confidence 3445566766 577789999999653
No 146
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=66.59 E-value=1.4 Score=35.51 Aligned_cols=17 Identities=41% Similarity=0.778 Sum_probs=15.1
Q ss_pred eeEEeeccCCCCCceee
Q psy12524 46 ACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 46 ~~v~~yG~~~sGKt~t~ 62 (151)
..++.||++|+|||+.+
T Consensus 168 ~~vLL~GppGtGKT~lA 184 (444)
T 2zan_A 168 RGILLFGPPGTGKSYLA 184 (444)
T ss_dssp SEEEEECSTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 46899999999999876
No 147
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=66.35 E-value=3.6 Score=36.26 Aligned_cols=21 Identities=24% Similarity=0.400 Sum_probs=19.2
Q ss_pred cCCCeeEEeeccCCCCCceee
Q psy12524 42 QGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 42 ~G~~~~v~~yG~~~sGKt~t~ 62 (151)
++.|.||+.-|.+|+|||.+.
T Consensus 166 ~~~nQsIiiSGESGAGKTe~t 186 (837)
T 1kk8_A 166 DRENQSCLITGESGAGKTENT 186 (837)
T ss_dssp HTSEEEEEEECSTTSSHHHHH
T ss_pred cCCCcEEEEeCCCCCCchhhH
Confidence 589999999999999999775
No 148
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=66.16 E-value=1.5 Score=34.01 Aligned_cols=18 Identities=39% Similarity=0.578 Sum_probs=15.6
Q ss_pred CeeEEeeccCCCCCceee
Q psy12524 45 NACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 45 ~~~v~~yG~~~sGKt~t~ 62 (151)
...++.+|++|+|||...
T Consensus 51 ~~~vll~GppGtGKT~la 68 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLA 68 (363)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 456889999999999876
No 149
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=65.56 E-value=3.9 Score=36.77 Aligned_cols=21 Identities=24% Similarity=0.477 Sum_probs=19.3
Q ss_pred cCCCeeEEeeccCCCCCceee
Q psy12524 42 QGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 42 ~G~~~~v~~yG~~~sGKt~t~ 62 (151)
++.|.||+.-|.+|||||.+.
T Consensus 169 ~~~~QsIiisGESGAGKTe~~ 189 (1010)
T 1g8x_A 169 DRQNQSLLITGESGAGKTENT 189 (1010)
T ss_dssp HTCCEEEEEEESTTSSHHHHH
T ss_pred cCCCeEEEEeCCCCCCcchHH
Confidence 589999999999999999775
No 150
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=65.53 E-value=4.4 Score=36.87 Aligned_cols=21 Identities=24% Similarity=0.476 Sum_probs=19.2
Q ss_pred cCCCeeEEeeccCCCCCceee
Q psy12524 42 QGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 42 ~G~~~~v~~yG~~~sGKt~t~ 62 (151)
.+.|.||+.-|.+|+|||.+.
T Consensus 166 ~~~~Q~i~isGeSGaGKTe~~ 186 (1184)
T 1i84_S 166 DREDQSILCTGESGAGKTENT 186 (1184)
T ss_dssp HTCCEEEECCCSTTSSTTHHH
T ss_pred cCCCcEEEEecCCCCCccHHH
Confidence 589999999999999999765
No 151
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=65.07 E-value=4.2 Score=36.72 Aligned_cols=21 Identities=24% Similarity=0.434 Sum_probs=19.4
Q ss_pred cCCCeeEEeeccCCCCCceee
Q psy12524 42 QGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 42 ~G~~~~v~~yG~~~sGKt~t~ 62 (151)
.+.|.||+.-|.+|||||.+.
T Consensus 141 ~~~nQsIiiSGESGAGKTest 161 (1052)
T 4anj_A 141 LKLSQSIIVSGESGAGKTENT 161 (1052)
T ss_dssp HTCCEEEEEECSTTSSHHHHH
T ss_pred hCCCceEEEecCCCCCHHHHH
Confidence 589999999999999999776
No 152
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=65.06 E-value=4.2 Score=36.47 Aligned_cols=21 Identities=24% Similarity=0.476 Sum_probs=19.3
Q ss_pred cCCCeeEEeeccCCCCCceee
Q psy12524 42 QGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 42 ~G~~~~v~~yG~~~sGKt~t~ 62 (151)
++.|.||+.-|.+|||||.+.
T Consensus 143 ~~~~QsIiisGESGAGKTe~~ 163 (995)
T 2ycu_A 143 DREDQSILCTGESGAGKTENT 163 (995)
T ss_dssp HCCCEEEEEECBTTSSHHHHH
T ss_pred cCCCcEEEecCCCCCCchhhH
Confidence 589999999999999999775
No 153
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=64.89 E-value=3.9 Score=30.49 Aligned_cols=24 Identities=33% Similarity=0.497 Sum_probs=17.2
Q ss_pred HHHhhcCCCeeEEeeccCCCCCceee
Q psy12524 37 LDNAFQGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 37 v~~~~~G~~~~v~~yG~~~sGKt~t~ 62 (151)
++.+++|.+ ++..++||+|||...
T Consensus 25 i~~i~~~~~--~lv~~~TGsGKT~~~ 48 (337)
T 2z0m_A 25 IPLMLQGKN--VVVRAKTGSGKTAAY 48 (337)
T ss_dssp HHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHhcCCC--EEEEcCCCCcHHHHH
Confidence 344556665 567789999999755
No 154
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=64.80 E-value=2.8 Score=29.44 Aligned_cols=28 Identities=29% Similarity=0.455 Sum_probs=20.0
Q ss_pred HHHHHhhc-CC--CeeEEeeccCCCCCceee
Q psy12524 35 DILDNAFQ-GY--NACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 35 ~lv~~~~~-G~--~~~v~~yG~~~sGKt~t~ 62 (151)
+-++.++. |. ...+..+|.+|+|||..+
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~ 37 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLA 37 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHH
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHH
Confidence 34566664 44 346788999999999776
No 155
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=64.60 E-value=1.9 Score=35.88 Aligned_cols=24 Identities=21% Similarity=0.376 Sum_probs=18.0
Q ss_pred hhcCCCeeEEeeccCCCCCceeec
Q psy12524 40 AFQGYNACIFAYGQTGSGKSYTMM 63 (151)
Q Consensus 40 ~~~G~~~~v~~yG~~~sGKt~t~~ 63 (151)
++...+..++..|..|||||.++.
T Consensus 17 av~~~~~~~lV~a~aGsGKT~~l~ 40 (647)
T 3lfu_A 17 AVAAPRSNLLVLAGAGSGKTRVLV 40 (647)
T ss_dssp HHTCCSSCEEEEECTTSCHHHHHH
T ss_pred HHhCCCCCEEEEECCCCCHHHHHH
Confidence 333335567888999999999984
No 156
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=64.43 E-value=3.1 Score=29.39 Aligned_cols=28 Identities=32% Similarity=0.466 Sum_probs=19.5
Q ss_pred HHHHHhhc-CC--CeeEEeeccCCCCCceee
Q psy12524 35 DILDNAFQ-GY--NACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 35 ~lv~~~~~-G~--~~~v~~yG~~~sGKt~t~ 62 (151)
+-++.++. |. ...+...|++|||||..+
T Consensus 12 ~~LD~~l~ggi~~G~~~~l~G~nGsGKSTll 42 (231)
T 4a74_A 12 KSLDKLLGGGIETQAITEVFGEFGSGKTQLA 42 (231)
T ss_dssp HHHHHHTTSSEESSEEEEEEESTTSSHHHHH
T ss_pred hhHHhHhcCCCCCCcEEEEECCCCCCHHHHH
Confidence 34556663 33 345677899999999876
No 157
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=64.24 E-value=3.5 Score=34.00 Aligned_cols=17 Identities=29% Similarity=0.489 Sum_probs=14.6
Q ss_pred eeEEeeccCCCCCceee
Q psy12524 46 ACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 46 ~~v~~yG~~~sGKt~t~ 62 (151)
..++.+|++|+|||+..
T Consensus 42 ~~VLL~GpPGtGKT~LA 58 (500)
T 3nbx_X 42 ESVFLLGPPGIAKSLIA 58 (500)
T ss_dssp CEEEEECCSSSSHHHHH
T ss_pred CeeEeecCchHHHHHHH
Confidence 36789999999999876
No 158
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=63.88 E-value=3.9 Score=33.51 Aligned_cols=18 Identities=28% Similarity=0.460 Sum_probs=15.7
Q ss_pred CeeEEeeccCCCCCceee
Q psy12524 45 NACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 45 ~~~v~~yG~~~sGKt~t~ 62 (151)
...++.+|++|+|||.++
T Consensus 77 ~~~lLL~GppGtGKTtla 94 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAA 94 (516)
T ss_dssp CSEEEEECSTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 357899999999999887
No 159
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=63.78 E-value=4 Score=33.25 Aligned_cols=25 Identities=20% Similarity=0.268 Sum_probs=18.7
Q ss_pred HHHhhcCCCeeEEeeccCCCCCcee
Q psy12524 37 LDNAFQGYNACIFAYGQTGSGKSYT 61 (151)
Q Consensus 37 v~~~~~G~~~~v~~yG~~~sGKt~t 61 (151)
+..+++|....++..++||||||.+
T Consensus 150 i~~i~~~~~~~~ll~apTGsGKT~~ 174 (508)
T 3fho_A 150 LPLLLSNPPRNMIGQSQSGTGKTAA 174 (508)
T ss_dssp HHHHHCSSCCCEEEECCSSTTSHHH
T ss_pred HHHHHcCCCCCEEEECCCCccHHHH
Confidence 3456666445678889999999986
No 160
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=63.57 E-value=1.4 Score=35.17 Aligned_cols=18 Identities=33% Similarity=0.558 Sum_probs=15.6
Q ss_pred CeeEEeeccCCCCCceee
Q psy12524 45 NACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 45 ~~~v~~yG~~~sGKt~t~ 62 (151)
+..++..|.||||||.++
T Consensus 53 ~~h~~i~G~tGsGKs~~~ 70 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLL 70 (437)
T ss_dssp GGCEEEEECTTSSHHHHH
T ss_pred cceEEEECCCCCCHHHHH
Confidence 556789999999999987
No 161
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=63.43 E-value=2.7 Score=28.40 Aligned_cols=27 Identities=22% Similarity=0.454 Sum_probs=20.1
Q ss_pred HHHHhhc-CCCeeEEeeccCCCCCceee
Q psy12524 36 ILDNAFQ-GYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 36 lv~~~~~-G~~~~v~~yG~~~sGKt~t~ 62 (151)
+.+.++. .....|+..|.+|+|||..+
T Consensus 8 ~~~~~~~~~~~~~i~v~G~~~~GKssli 35 (183)
T 1moz_A 8 MFDKLWGSNKELRILILGLDGAGKTTIL 35 (183)
T ss_dssp HHGGGTTCSSCEEEEEEEETTSSHHHHH
T ss_pred HHHHhcCCCCccEEEEECCCCCCHHHHH
Confidence 3344454 46678899999999999766
No 162
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=63.21 E-value=4.8 Score=36.45 Aligned_cols=21 Identities=29% Similarity=0.536 Sum_probs=19.1
Q ss_pred cCCCeeEEeeccCCCCCceee
Q psy12524 42 QGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 42 ~G~~~~v~~yG~~~sGKt~t~ 62 (151)
++.|.||+.-|.+|+|||.+.
T Consensus 153 ~~~~QsIiisGESGAGKTe~~ 173 (1080)
T 2dfs_A 153 DERNQSIIVSGESGAGKTVSA 173 (1080)
T ss_dssp HTCCEEEEEECSTTSSHHHHH
T ss_pred cCCCcEEEEcCCCCCCccchH
Confidence 589999999999999999765
No 163
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=63.09 E-value=2.6 Score=28.21 Aligned_cols=16 Identities=44% Similarity=0.505 Sum_probs=13.3
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
.++..|.+|||||...
T Consensus 3 ~I~l~G~~GsGKsT~a 18 (179)
T 3lw7_A 3 VILITGMPGSGKSEFA 18 (179)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678899999999765
No 164
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=63.04 E-value=3.4 Score=32.30 Aligned_cols=24 Identities=25% Similarity=0.249 Sum_probs=17.9
Q ss_pred HHHHhhcCCCeeEEeeccCCCCCcee
Q psy12524 36 ILDNAFQGYNACIFAYGQTGSGKSYT 61 (151)
Q Consensus 36 lv~~~~~G~~~~v~~yG~~~sGKt~t 61 (151)
.+..+++|.+ ++..++||||||..
T Consensus 29 ~i~~i~~~~~--~lv~apTGsGKT~~ 52 (414)
T 3oiy_A 29 WAKRIVQGKS--FTMVAPTGVGKTTF 52 (414)
T ss_dssp HHHHHTTTCC--EECCSCSSSSHHHH
T ss_pred HHHHHhcCCC--EEEEeCCCCCHHHH
Confidence 3455667765 57889999999983
No 165
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=62.57 E-value=1.8 Score=33.00 Aligned_cols=24 Identities=25% Similarity=0.529 Sum_probs=16.6
Q ss_pred HhhcCCCeeEEeeccCCCCCceee
Q psy12524 39 NAFQGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 39 ~~~~G~~~~v~~yG~~~sGKt~t~ 62 (151)
.++.|.+-.|...|.+|+|||..+
T Consensus 12 ~~l~~~~~~I~lvG~nG~GKSTLl 35 (301)
T 2qnr_A 12 SVKKGFEFTLMVVGESGLGKSTLI 35 (301)
T ss_dssp ------CEEEEEEEETTSSHHHHH
T ss_pred EEEcCCCEEEEEECCCCCCHHHHH
Confidence 367788889999999999999876
No 166
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=62.50 E-value=1.8 Score=30.14 Aligned_cols=15 Identities=40% Similarity=0.645 Sum_probs=12.4
Q ss_pred EEeeccCCCCCceee
Q psy12524 48 IFAYGQTGSGKSYTM 62 (151)
Q Consensus 48 v~~yG~~~sGKt~t~ 62 (151)
+...|++|||||.++
T Consensus 4 i~l~GpsGaGKsTl~ 18 (186)
T 3a00_A 4 IVISGPSGTGKSTLL 18 (186)
T ss_dssp EEEESSSSSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 456799999999775
No 167
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=62.35 E-value=2.8 Score=28.53 Aligned_cols=17 Identities=29% Similarity=0.364 Sum_probs=13.9
Q ss_pred eeEEeeccCCCCCceee
Q psy12524 46 ACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 46 ~~v~~yG~~~sGKt~t~ 62 (151)
..|+..|.+|||||...
T Consensus 4 ~~i~l~G~~GsGKST~a 20 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIV 20 (178)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35788999999998654
No 168
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=62.09 E-value=1.9 Score=30.07 Aligned_cols=16 Identities=19% Similarity=0.355 Sum_probs=12.9
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
.+...|++|||||..+
T Consensus 9 ii~l~Gp~GsGKSTl~ 24 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLV 24 (205)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECcCCCCHHHHH
Confidence 4556799999999766
No 169
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=61.98 E-value=2.8 Score=29.95 Aligned_cols=26 Identities=23% Similarity=0.494 Sum_probs=18.3
Q ss_pred HHHhhc-CC--CeeEEeeccCCCCCceee
Q psy12524 37 LDNAFQ-GY--NACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 37 v~~~~~-G~--~~~v~~yG~~~sGKt~t~ 62 (151)
++.++. |. ...++.+|.+|+|||..+
T Consensus 12 LD~~l~gGl~~G~~~~i~G~~GsGKTtl~ 40 (247)
T 2dr3_A 12 VDEILHGGIPERNVVLLSGGPGTGKTIFS 40 (247)
T ss_dssp HHHHTTTSEETTCEEEEEECTTSSHHHHH
T ss_pred HHHHcCCCCCCCcEEEEECCCCCCHHHHH
Confidence 355543 22 346778899999999885
No 170
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=61.96 E-value=3.9 Score=30.74 Aligned_cols=17 Identities=24% Similarity=0.258 Sum_probs=15.0
Q ss_pred eeEEeeccCCCCCceee
Q psy12524 46 ACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 46 ~~v~~yG~~~sGKt~t~ 62 (151)
..++.+|..|+|||..+
T Consensus 32 ~~v~i~G~~G~GKT~Ll 48 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLL 48 (350)
T ss_dssp SEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCcCCHHHHH
Confidence 57889999999999876
No 171
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=61.95 E-value=4.5 Score=31.33 Aligned_cols=24 Identities=29% Similarity=0.339 Sum_probs=17.6
Q ss_pred HHHhhcCCCeeEEeeccCCCCCceee
Q psy12524 37 LDNAFQGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 37 v~~~~~G~~~~v~~yG~~~sGKt~t~ 62 (151)
+..++.|.+. +..++||||||...
T Consensus 46 i~~i~~~~~~--lv~a~TGsGKT~~~ 69 (417)
T 2i4i_A 46 IPIIKEKRDL--MACAQTGSGKTAAF 69 (417)
T ss_dssp HHHHHTTCCE--EEECCTTSCHHHHH
T ss_pred HHHHccCCCE--EEEcCCCCHHHHHH
Confidence 4456677764 67789999999753
No 172
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=61.71 E-value=2.1 Score=29.55 Aligned_cols=17 Identities=35% Similarity=0.507 Sum_probs=14.2
Q ss_pred eeEEeeccCCCCCceee
Q psy12524 46 ACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 46 ~~v~~yG~~~sGKt~t~ 62 (151)
..+...|.+|||||..+
T Consensus 10 ~~i~l~G~~GsGKSTl~ 26 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIA 26 (191)
T ss_dssp EEEEEEECTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45777899999999876
No 173
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=61.36 E-value=4.4 Score=30.58 Aligned_cols=21 Identities=24% Similarity=0.351 Sum_probs=15.8
Q ss_pred cCC-CeeEEeeccCCCCCceee
Q psy12524 42 QGY-NACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 42 ~G~-~~~v~~yG~~~sGKt~t~ 62 (151)
.|. ...++.+|++|+|||+++
T Consensus 44 ~~~~~~~~L~~G~~G~GKT~la 65 (324)
T 3u61_B 44 KGKIPHIILHSPSPGTGKTTVA 65 (324)
T ss_dssp TTCCCSEEEECSSTTSSHHHHH
T ss_pred cCCCCeEEEeeCcCCCCHHHHH
Confidence 444 345677788999999987
No 174
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=61.32 E-value=5.5 Score=34.16 Aligned_cols=16 Identities=31% Similarity=0.436 Sum_probs=14.7
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
.++.+|++|+|||+..
T Consensus 523 ~~Ll~Gp~GtGKT~lA 538 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELA 538 (758)
T ss_dssp EEEEESCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 6999999999999876
No 175
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=61.31 E-value=2.1 Score=29.73 Aligned_cols=16 Identities=19% Similarity=0.372 Sum_probs=13.2
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
.+...|++|||||..+
T Consensus 7 ~i~i~GpsGsGKSTL~ 22 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIK 22 (180)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4566799999999876
No 176
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=61.25 E-value=5.8 Score=33.22 Aligned_cols=25 Identities=28% Similarity=0.500 Sum_probs=18.7
Q ss_pred HHHHHhhcCCCeeEEeeccCCCCCcee
Q psy12524 35 DILDNAFQGYNACIFAYGQTGSGKSYT 61 (151)
Q Consensus 35 ~lv~~~~~G~~~~v~~yG~~~sGKt~t 61 (151)
..++.++.|.+ +++..+||+|||..
T Consensus 51 ~~i~~il~g~d--~lv~~pTGsGKTl~ 75 (591)
T 2v1x_A 51 ETINVTMAGKE--VFLVMPTGGGKSLC 75 (591)
T ss_dssp HHHHHHHTTCC--EEEECCTTSCTTHH
T ss_pred HHHHHHHcCCC--EEEEECCCChHHHH
Confidence 34556677877 46778999999974
No 177
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=60.86 E-value=5.6 Score=32.83 Aligned_cols=26 Identities=19% Similarity=0.429 Sum_probs=19.1
Q ss_pred HHHHhhcCCCeeEEeeccCCCCCcee
Q psy12524 36 ILDNAFQGYNACIFAYGQTGSGKSYT 61 (151)
Q Consensus 36 lv~~~~~G~~~~v~~yG~~~sGKt~t 61 (151)
.+..++.+....+++.++||||||..
T Consensus 51 ~i~~il~~~~~dvlv~apTGsGKTl~ 76 (579)
T 3sqw_A 51 TIKPILSSEDHDVIARAKTGTGKTFA 76 (579)
T ss_dssp HHHHHHCSSSEEEEEECCTTSCHHHH
T ss_pred HHHHHHccCCCeEEEEcCCCcHHHHH
Confidence 44556655555678889999999975
No 178
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=60.66 E-value=2 Score=30.17 Aligned_cols=15 Identities=33% Similarity=0.578 Sum_probs=12.8
Q ss_pred EEeeccCCCCCceee
Q psy12524 48 IFAYGQTGSGKSYTM 62 (151)
Q Consensus 48 v~~yG~~~sGKt~t~ 62 (151)
+...|++|||||..+
T Consensus 3 i~l~G~nGsGKTTLl 17 (178)
T 1ye8_A 3 IIITGEPGVGKTTLV 17 (178)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 456799999999887
No 179
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=60.65 E-value=3 Score=28.24 Aligned_cols=16 Identities=44% Similarity=0.497 Sum_probs=13.4
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
.++..|.+|||||...
T Consensus 4 ~I~i~G~~GsGKST~a 19 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWA 19 (181)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEecCCCCCHHHHH
Confidence 5788899999998754
No 180
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=60.46 E-value=2.2 Score=30.42 Aligned_cols=17 Identities=29% Similarity=0.362 Sum_probs=13.9
Q ss_pred eeEEeeccCCCCCceee
Q psy12524 46 ACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 46 ~~v~~yG~~~sGKt~t~ 62 (151)
..+...|++|||||.++
T Consensus 9 ~~i~l~GpsGsGKsTl~ 25 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVR 25 (208)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred cEEEEECcCCCCHHHHH
Confidence 35667899999999876
No 181
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=60.20 E-value=5 Score=31.88 Aligned_cols=24 Identities=33% Similarity=0.448 Sum_probs=17.6
Q ss_pred HHHHhhcCCCeeEEeeccCCCCCcee
Q psy12524 36 ILDNAFQGYNACIFAYGQTGSGKSYT 61 (151)
Q Consensus 36 lv~~~~~G~~~~v~~yG~~~sGKt~t 61 (151)
.+..+++|.+ +++.++||||||..
T Consensus 86 ai~~i~~g~d--~i~~a~TGsGKT~a 109 (434)
T 2db3_A 86 SIPVISSGRD--LMACAQTGSGKTAA 109 (434)
T ss_dssp HHHHHHTTCC--EEEECCTTSSHHHH
T ss_pred HHHHHhcCCC--EEEECCCCCCchHH
Confidence 3444667766 57778999999985
No 182
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=59.88 E-value=2.3 Score=34.22 Aligned_cols=23 Identities=26% Similarity=0.538 Sum_probs=19.7
Q ss_pred hhcCCCeeEEeeccCCCCCceee
Q psy12524 40 AFQGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 40 ~~~G~~~~v~~yG~~~sGKt~t~ 62 (151)
++.|.+-.|...|.+|+|||..+
T Consensus 26 vl~~vsf~I~lvG~sGaGKSTLl 48 (418)
T 2qag_C 26 VKRGFEFTLMVVGESGLGKSTLI 48 (418)
T ss_dssp CC-CCCEEEEEECCTTSSHHHHH
T ss_pred EecCCCEEEEEECCCCCcHHHHH
Confidence 67888999999999999999876
No 183
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=59.86 E-value=2.3 Score=30.58 Aligned_cols=17 Identities=29% Similarity=0.487 Sum_probs=14.0
Q ss_pred eeEEeeccCCCCCceee
Q psy12524 46 ACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 46 ~~v~~yG~~~sGKt~t~ 62 (151)
..+...|++|||||..+
T Consensus 31 ~~~~l~GpnGsGKSTLl 47 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFA 47 (251)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred cEEEEEeCCCCCHHHHH
Confidence 35567899999999877
No 184
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=59.83 E-value=5.9 Score=34.59 Aligned_cols=17 Identities=29% Similarity=0.440 Sum_probs=15.3
Q ss_pred eeEEeeccCCCCCceee
Q psy12524 46 ACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 46 ~~v~~yG~~~sGKt~t~ 62 (151)
..++.+|++|+|||++.
T Consensus 589 ~~vLl~Gp~GtGKT~lA 605 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELA 605 (854)
T ss_dssp EEEEEBSCSSSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 57999999999999876
No 185
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=59.34 E-value=5.4 Score=30.51 Aligned_cols=25 Identities=20% Similarity=0.473 Sum_probs=18.1
Q ss_pred HHHHhhcCCCeeEEeeccCCCCCceee
Q psy12524 36 ILDNAFQGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 36 lv~~~~~G~~~~v~~yG~~~sGKt~t~ 62 (151)
.+..++.|.+ ++..++||+|||...
T Consensus 38 ~i~~~~~~~~--~lv~a~TGsGKT~~~ 62 (391)
T 1xti_A 38 CIPQAILGMD--VLCQAKSGMGKTAVF 62 (391)
T ss_dssp HHHHHTTTCC--EEEECSSCSSHHHHH
T ss_pred HHHHHhcCCc--EEEECCCCCcHHHHH
Confidence 4455666766 566789999999764
No 186
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=59.28 E-value=5.3 Score=34.82 Aligned_cols=27 Identities=22% Similarity=0.284 Sum_probs=19.5
Q ss_pred HHHHhhcCCCeeEEeeccCCCCCceee
Q psy12524 36 ILDNAFQGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 36 lv~~~~~G~~~~v~~yG~~~sGKt~t~ 62 (151)
+....-.+....++..|.||||||...
T Consensus 380 I~~~l~~~~~~~~Ll~a~TGSGKTlva 406 (780)
T 1gm5_A 380 IRNDMISEKPMNRLLQGDVGSGKTVVA 406 (780)
T ss_dssp HHHHHHSSSCCCCEEECCSSSSHHHHH
T ss_pred HHhhccccCCCcEEEEcCCCCCHHHHH
Confidence 334444555567789999999999765
No 187
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=59.16 E-value=5.8 Score=30.13 Aligned_cols=20 Identities=45% Similarity=0.595 Sum_probs=15.0
Q ss_pred CCCeeEEeeccCCCCCceee
Q psy12524 43 GYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 43 G~~~~v~~yG~~~sGKt~t~ 62 (151)
+....|...|.+|||||..+
T Consensus 29 ~~~~ii~I~G~sGsGKSTla 48 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTS 48 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHH
Confidence 34455666799999999766
No 188
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=58.86 E-value=3.8 Score=34.47 Aligned_cols=17 Identities=29% Similarity=0.421 Sum_probs=14.4
Q ss_pred eEEeeccCCCCCceeec
Q psy12524 47 CIFAYGQTGSGKSYTMM 63 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~~ 63 (151)
..+..|+.|||||+++.
T Consensus 197 ~~li~GppGTGKT~~~~ 213 (624)
T 2gk6_A 197 LSLIQGPPGTGKTVTSA 213 (624)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred CeEEECCCCCCHHHHHH
Confidence 46789999999999863
No 189
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=58.81 E-value=2.3 Score=35.76 Aligned_cols=18 Identities=28% Similarity=0.399 Sum_probs=15.0
Q ss_pred CeeEEeeccCCCCCceee
Q psy12524 45 NACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 45 ~~~v~~yG~~~sGKt~t~ 62 (151)
+..++..|.+|||||+++
T Consensus 164 ~~~~vi~G~pGTGKTt~l 181 (608)
T 1w36_D 164 RRISVISGGPGTGKTTTV 181 (608)
T ss_dssp BSEEEEECCTTSTHHHHH
T ss_pred CCCEEEEeCCCCCHHHHH
Confidence 346788999999999886
No 190
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=58.53 E-value=2.3 Score=33.38 Aligned_cols=19 Identities=32% Similarity=0.441 Sum_probs=15.7
Q ss_pred CCeeEEeeccCCCCCceee
Q psy12524 44 YNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 44 ~~~~v~~yG~~~sGKt~t~ 62 (151)
.+..++..|.+|||||.++
T Consensus 34 ~~~~~~i~G~~G~GKs~~~ 52 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTA 52 (392)
T ss_dssp CCCCEEEECCTTSSHHHHH
T ss_pred ccCceEEEcCCCCCHHHHH
Confidence 3556678899999999887
No 191
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=58.25 E-value=2.3 Score=35.07 Aligned_cols=16 Identities=25% Similarity=0.418 Sum_probs=14.5
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
.++.+|++|+|||+.+
T Consensus 66 GvLL~GppGtGKTtLa 81 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLA 81 (499)
T ss_dssp EEEEECSSSSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4899999999999887
No 192
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=58.10 E-value=3.5 Score=28.25 Aligned_cols=16 Identities=31% Similarity=0.488 Sum_probs=13.7
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
.|+..|.+|||||...
T Consensus 7 ~i~l~G~~GsGKst~a 22 (185)
T 3trf_A 7 NIYLIGLMGAGKTSVG 22 (185)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5778899999999765
No 193
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=58.06 E-value=5.7 Score=31.96 Aligned_cols=25 Identities=32% Similarity=0.541 Sum_probs=18.1
Q ss_pred HHHHhhcCCCeeEEeeccCCCCCceee
Q psy12524 36 ILDNAFQGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 36 lv~~~~~G~~~~v~~yG~~~sGKt~t~ 62 (151)
.+..++.|.+ ++..++||||||...
T Consensus 15 ~i~~~~~~~~--~l~~~~tGsGKT~~~ 39 (556)
T 4a2p_A 15 LAQPAINGKN--ALICAPTGSGKTFVS 39 (556)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHHcCCC--EEEEcCCCChHHHHH
Confidence 3445567766 567789999999764
No 194
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=57.59 E-value=2.6 Score=29.15 Aligned_cols=16 Identities=38% Similarity=0.426 Sum_probs=13.0
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
.+...|.+|||||.++
T Consensus 4 ii~l~G~~GaGKSTl~ 19 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTC 19 (189)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 4567799999998865
No 195
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=57.53 E-value=2.4 Score=30.05 Aligned_cols=16 Identities=31% Similarity=0.505 Sum_probs=13.3
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
.+...|++|+|||.++
T Consensus 6 ~i~lvGpsGaGKSTLl 21 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLL 21 (198)
T ss_dssp CEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4567799999999876
No 196
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=57.31 E-value=2.5 Score=29.00 Aligned_cols=16 Identities=38% Similarity=0.347 Sum_probs=13.6
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
....+|.+|||||..+
T Consensus 28 ~~~i~G~NGsGKStll 43 (182)
T 3kta_A 28 FTAIVGANGSGKSNIG 43 (182)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred cEEEECCCCCCHHHHH
Confidence 5568899999999876
No 197
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=57.30 E-value=3 Score=28.59 Aligned_cols=17 Identities=29% Similarity=0.360 Sum_probs=14.4
Q ss_pred eeEEeeccCCCCCceee
Q psy12524 46 ACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 46 ~~v~~yG~~~sGKt~t~ 62 (151)
..|+..|.+|||||...
T Consensus 12 ~~i~i~G~~GsGKst~~ 28 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLG 28 (180)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CeEEEEeCCCCCHHHHH
Confidence 35788999999999876
No 198
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=57.10 E-value=3.2 Score=35.09 Aligned_cols=20 Identities=20% Similarity=0.303 Sum_probs=16.7
Q ss_pred CCeeEEeeccCCCCCceeec
Q psy12524 44 YNACIFAYGQTGSGKSYTMM 63 (151)
Q Consensus 44 ~~~~v~~yG~~~sGKt~t~~ 63 (151)
.+..++..|..|||||+++.
T Consensus 14 ~~~~~lV~AgaGSGKT~~l~ 33 (673)
T 1uaa_A 14 VTGPCLVLAGAGSGKTRVIT 33 (673)
T ss_dssp CSSEEEECCCTTSCHHHHHH
T ss_pred CCCCEEEEeCCCCChHHHHH
Confidence 35667888999999999984
No 199
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=57.09 E-value=7.4 Score=33.26 Aligned_cols=17 Identities=29% Similarity=0.425 Sum_probs=15.0
Q ss_pred eeEEeeccCCCCCceee
Q psy12524 46 ACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 46 ~~v~~yG~~~sGKt~t~ 62 (151)
..++.+|++|+|||++.
T Consensus 489 ~~~ll~G~~GtGKT~la 505 (758)
T 1r6b_X 489 GSFLFAGPTGVGKTEVT 505 (758)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCcHHHHH
Confidence 47899999999999876
No 200
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=56.74 E-value=4.2 Score=28.02 Aligned_cols=18 Identities=28% Similarity=0.468 Sum_probs=14.2
Q ss_pred CeeEEeeccCCCCCceee
Q psy12524 45 NACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 45 ~~~v~~yG~~~sGKt~t~ 62 (151)
...++..|..|||||...
T Consensus 13 ~~~i~l~G~~GsGKsT~~ 30 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIA 30 (186)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred CcEEEEEcCCCCCHHHHH
Confidence 456778899999998654
No 201
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=56.41 E-value=2.8 Score=29.21 Aligned_cols=16 Identities=31% Similarity=0.410 Sum_probs=13.1
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
.+...|.+|||||..+
T Consensus 8 ~i~l~G~~GsGKSTl~ 23 (207)
T 2j41_A 8 LIVLSGPSGVGKGTVR 23 (207)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5667899999998765
No 202
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=55.89 E-value=2.9 Score=29.61 Aligned_cols=16 Identities=25% Similarity=0.401 Sum_probs=12.9
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
.+...|++|||||.++
T Consensus 22 i~~l~GpnGsGKSTLl 37 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVV 37 (207)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4456799999999876
No 203
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=55.84 E-value=3.4 Score=28.02 Aligned_cols=16 Identities=44% Similarity=0.559 Sum_probs=13.5
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
..+.+|++|||||..+
T Consensus 25 ~~~I~G~NGsGKStil 40 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLL 40 (149)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4568899999999876
No 204
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=55.38 E-value=6.9 Score=29.97 Aligned_cols=27 Identities=11% Similarity=0.236 Sum_probs=19.4
Q ss_pred HHHHhhcCC-CeeEEeeccCCCCCceee
Q psy12524 36 ILDNAFQGY-NACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 36 lv~~~~~G~-~~~v~~yG~~~sGKt~t~ 62 (151)
+...+-.|. ...++.||+.|+|||.+.
T Consensus 14 l~~~i~~~~~~~a~L~~G~~G~GKt~~a 41 (334)
T 1a5t_A 14 LVASYQAGRGHHALLIQALPGMGDDALI 41 (334)
T ss_dssp HHHHHHTTCCCSEEEEECCTTSCHHHHH
T ss_pred HHHHHHcCCcceeEEEECCCCchHHHHH
Confidence 334444554 446889999999999876
No 205
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=55.31 E-value=4.1 Score=30.07 Aligned_cols=16 Identities=38% Similarity=0.451 Sum_probs=13.0
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
.++..|.+|||||...
T Consensus 3 li~I~G~~GSGKSTla 18 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMA 18 (253)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 4678899999998653
No 206
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=55.00 E-value=3.7 Score=29.47 Aligned_cols=16 Identities=19% Similarity=0.331 Sum_probs=9.0
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
.+...|++|||||.++
T Consensus 29 ii~l~Gp~GsGKSTl~ 44 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVA 44 (231)
T ss_dssp EEEEECSCC----CHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4556799999999875
No 207
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=54.98 E-value=4.4 Score=27.14 Aligned_cols=16 Identities=25% Similarity=0.038 Sum_probs=13.2
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
.|+..|..|||||...
T Consensus 3 ~i~l~G~~GsGKsT~~ 18 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVA 18 (173)
T ss_dssp EEEEECSSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4677899999999765
No 208
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=54.88 E-value=6.4 Score=32.99 Aligned_cols=25 Identities=32% Similarity=0.446 Sum_probs=18.4
Q ss_pred HHHHhhcCCCeeEEeeccCCCCCceee
Q psy12524 36 ILDNAFQGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 36 lv~~~~~G~~~~v~~yG~~~sGKt~t~ 62 (151)
.++.+++|.+ ++..++||+|||...
T Consensus 15 ~i~~il~g~~--~ll~~~TGsGKTl~~ 39 (699)
T 4gl2_A 15 VAQPALEGKN--IIICLPTGCGKTRVA 39 (699)
T ss_dssp HHHHHHSSCC--EEECCCTTSCHHHHH
T ss_pred HHHHHHhCCC--EEEEcCCCCcHHHHH
Confidence 3445566766 577889999999765
No 209
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=54.87 E-value=3.5 Score=31.58 Aligned_cols=17 Identities=29% Similarity=0.571 Sum_probs=14.0
Q ss_pred eeEEeeccCCCCCceee
Q psy12524 46 ACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 46 ~~v~~yG~~~sGKt~t~ 62 (151)
..+...|.+|||||.++
T Consensus 103 ~vi~lvG~nGsGKTTll 119 (304)
T 1rj9_A 103 RVVLVVGVNGVGKTTTI 119 (304)
T ss_dssp SEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCcHHHHH
Confidence 45666799999999887
No 210
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=54.82 E-value=2.8 Score=34.37 Aligned_cols=17 Identities=29% Similarity=0.495 Sum_probs=14.9
Q ss_pred eeEEeeccCCCCCceee
Q psy12524 46 ACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 46 ~~v~~yG~~~sGKt~t~ 62 (151)
..++.+|++|+|||..+
T Consensus 50 ~gvLL~GppGtGKT~La 66 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLA 66 (476)
T ss_dssp SEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 45899999999999876
No 211
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=54.71 E-value=6.7 Score=32.86 Aligned_cols=24 Identities=29% Similarity=0.436 Sum_probs=17.5
Q ss_pred HHHhhcCCCeeEEeeccCCCCCceee
Q psy12524 37 LDNAFQGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 37 v~~~~~G~~~~v~~yG~~~sGKt~t~ 62 (151)
+..++.|.+ ++..++||+|||...
T Consensus 22 i~~~l~g~~--~iv~~~TGsGKTl~~ 45 (696)
T 2ykg_A 22 ALPAMKGKN--TIICAPTGCGKTFVS 45 (696)
T ss_dssp HHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHHcCCC--EEEEcCCCchHHHHH
Confidence 345566766 467789999999743
No 212
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=54.65 E-value=6.6 Score=27.46 Aligned_cols=20 Identities=35% Similarity=0.451 Sum_probs=15.0
Q ss_pred CCCeeEEeeccCCCCCceee
Q psy12524 43 GYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 43 G~~~~v~~yG~~~sGKt~t~ 62 (151)
.....+...|.+|||||..+
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~ 42 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLA 42 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHH
Confidence 34456777899999998654
No 213
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=54.49 E-value=4 Score=27.57 Aligned_cols=16 Identities=44% Similarity=0.551 Sum_probs=13.6
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
.+...|.+|||||...
T Consensus 6 ~i~l~G~~GsGKSTl~ 21 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIG 21 (173)
T ss_dssp CEEEECCTTSCHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4778899999999775
No 214
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=54.45 E-value=4.3 Score=28.43 Aligned_cols=16 Identities=38% Similarity=0.465 Sum_probs=13.9
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
.++..|.+|||||...
T Consensus 27 ~i~l~G~~GsGKsTl~ 42 (199)
T 3vaa_A 27 RIFLTGYMGAGKTTLG 42 (199)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 6788899999999775
No 215
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=54.21 E-value=13 Score=29.41 Aligned_cols=21 Identities=38% Similarity=0.751 Sum_probs=18.1
Q ss_pred cCCCeeEEeeccCCCCCceee
Q psy12524 42 QGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 42 ~G~~~~v~~yG~~~sGKt~t~ 62 (151)
.|....++..|..|+|||...
T Consensus 21 ~g~~~~i~l~G~~G~GKTTl~ 41 (359)
T 2ga8_A 21 DNYRVCVILVGSPGSGKSTIA 41 (359)
T ss_dssp TCSCEEEEEECCTTSSHHHHH
T ss_pred cCCeeEEEEECCCCCcHHHHH
Confidence 577777899999999999876
No 216
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=54.19 E-value=4.3 Score=32.60 Aligned_cols=24 Identities=17% Similarity=0.210 Sum_probs=18.1
Q ss_pred HHHhhcCCCeeEEeeccCCCCCcee
Q psy12524 37 LDNAFQGYNACIFAYGQTGSGKSYT 61 (151)
Q Consensus 37 v~~~~~G~~~~v~~yG~~~sGKt~t 61 (151)
+..+++|.+. +++.++||||||..
T Consensus 12 i~~~l~~~~~-~lv~a~TGsGKT~~ 35 (451)
T 2jlq_A 12 DEDIFRKKRL-TIMDLHPGAGKTKR 35 (451)
T ss_dssp CGGGGSTTCE-EEECCCTTSSCCTT
T ss_pred HHHHHhcCCe-EEEECCCCCCHhhH
Confidence 3456677664 56789999999986
No 217
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=54.05 E-value=7.3 Score=31.21 Aligned_cols=24 Identities=29% Similarity=0.368 Sum_probs=17.4
Q ss_pred HHHhhcCCCeeEEeeccCCCCCceee
Q psy12524 37 LDNAFQGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 37 v~~~~~G~~~~v~~yG~~~sGKt~t~ 62 (151)
++.++.|.+ ++..++||||||...
T Consensus 13 i~~~~~~~~--~l~~~~tGsGKT~~~ 36 (555)
T 3tbk_A 13 ALPAKKGKN--TIICAPTGCGKTFVS 36 (555)
T ss_dssp HHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHhCCCC--EEEEeCCCChHHHHH
Confidence 345567766 467789999999764
No 218
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=53.90 E-value=9.4 Score=29.53 Aligned_cols=18 Identities=39% Similarity=0.497 Sum_probs=14.6
Q ss_pred CeeEEeeccCCCCCceee
Q psy12524 45 NACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 45 ~~~v~~yG~~~sGKt~t~ 62 (151)
...+...|.+|+|||.++
T Consensus 129 g~vi~lvG~nGaGKTTll 146 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTI 146 (328)
T ss_dssp SEEEEEECCTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 345667799999999887
No 219
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=53.66 E-value=7.3 Score=29.27 Aligned_cols=25 Identities=28% Similarity=0.311 Sum_probs=17.2
Q ss_pred HHHhhcCCCeeEEeeccCCCCCceee
Q psy12524 37 LDNAFQGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 37 v~~~~~G~~~~v~~yG~~~sGKt~t~ 62 (151)
+..+++|. ..++..++||||||...
T Consensus 37 i~~~~~~~-~~~l~~~~TGsGKT~~~ 61 (367)
T 1hv8_A 37 IPLFLNDE-YNIVAQARTGSGKTASF 61 (367)
T ss_dssp HHHHHHTC-SEEEEECCSSSSHHHHH
T ss_pred HHHHhCCC-CCEEEECCCCChHHHHH
Confidence 34455553 24577889999999874
No 220
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=53.49 E-value=5.9 Score=29.75 Aligned_cols=17 Identities=24% Similarity=0.354 Sum_probs=15.2
Q ss_pred eeEEeeccCCCCCceee
Q psy12524 46 ACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 46 ~~v~~yG~~~sGKt~t~ 62 (151)
..++.+|..|+|||..+
T Consensus 31 ~~v~i~G~~G~GKT~L~ 47 (357)
T 2fna_A 31 PITLVLGLRRTGKSSII 47 (357)
T ss_dssp SEEEEEESTTSSHHHHH
T ss_pred CcEEEECCCCCCHHHHH
Confidence 47889999999999876
No 221
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=53.18 E-value=3.4 Score=31.00 Aligned_cols=17 Identities=41% Similarity=0.515 Sum_probs=14.2
Q ss_pred eeEEeeccCCCCCceee
Q psy12524 46 ACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 46 ~~v~~yG~~~sGKt~t~ 62 (151)
-++...|++|+|||..+
T Consensus 3 f~v~lvG~nGaGKSTLl 19 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLV 19 (270)
T ss_dssp EEEEEEESSSSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35677899999999877
No 222
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=53.08 E-value=4.4 Score=31.01 Aligned_cols=24 Identities=29% Similarity=0.487 Sum_probs=17.5
Q ss_pred HHHHhhcCCCeeEEeeccCCCCCcee
Q psy12524 36 ILDNAFQGYNACIFAYGQTGSGKSYT 61 (151)
Q Consensus 36 lv~~~~~G~~~~v~~yG~~~sGKt~t 61 (151)
.+..++.|.+ ++..++||+|||..
T Consensus 51 ~i~~i~~~~~--~lv~~~TGsGKT~~ 74 (394)
T 1fuu_A 51 AIMPIIEGHD--VLAQAQSGTGKTGT 74 (394)
T ss_dssp HHHHHHHTCC--EEECCCSSHHHHHH
T ss_pred HHHHHhCCCC--EEEECCCCChHHHH
Confidence 3445566766 46778999999976
No 223
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=52.77 E-value=6.4 Score=30.44 Aligned_cols=28 Identities=25% Similarity=0.323 Sum_probs=21.2
Q ss_pred HHHHHhhc-CC--CeeEEeeccCCCCCceee
Q psy12524 35 DILDNAFQ-GY--NACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 35 ~lv~~~~~-G~--~~~v~~yG~~~sGKt~t~ 62 (151)
+-++.++. |. ...+..+|.+|+|||..+
T Consensus 109 ~~LD~~LgGGl~~G~i~~I~G~~GsGKTtla 139 (343)
T 1v5w_A 109 QEFDKLLGGGIESMAITEAFGEFRTGKTQLS 139 (343)
T ss_dssp HHHHHHTTSSBCSSEEEEEECCTTCTHHHHH
T ss_pred hhHHHHhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 45677775 43 446788999999999876
No 224
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=52.49 E-value=4.5 Score=27.62 Aligned_cols=16 Identities=19% Similarity=0.389 Sum_probs=13.4
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
.++..|..|||||...
T Consensus 5 ~I~i~G~~GsGKsT~~ 20 (192)
T 1kht_A 5 VVVVTGVPGVGSTTSS 20 (192)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5788899999998754
No 225
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=52.35 E-value=8.4 Score=26.16 Aligned_cols=23 Identities=17% Similarity=0.306 Sum_probs=19.1
Q ss_pred hhcCCCeeEEeeccCCCCCceee
Q psy12524 40 AFQGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 40 ~~~G~~~~v~~yG~~~sGKt~t~ 62 (151)
.+......|+..|..++|||..+
T Consensus 11 ~~~~~~~~i~v~G~~~~GKssl~ 33 (187)
T 1zj6_A 11 LFNHQEHKVIIVGLDNAGKTTIL 33 (187)
T ss_dssp HHTTSCEEEEEEESTTSSHHHHH
T ss_pred hcCCCccEEEEECCCCCCHHHHH
Confidence 45566778999999999999776
No 226
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=52.30 E-value=12 Score=34.00 Aligned_cols=28 Identities=21% Similarity=0.291 Sum_probs=20.6
Q ss_pred HHHHHHhhcCCCeeEEeeccCCCCCcee
Q psy12524 34 RDILDNAFQGYNACIFAYGQTGSGKSYT 61 (151)
Q Consensus 34 ~~lv~~~~~G~~~~v~~yG~~~sGKt~t 61 (151)
..+.++...|....++..|.||+|||..
T Consensus 613 ~~il~~~~~g~p~d~ll~~~TGsGKT~v 640 (1151)
T 2eyq_A 613 NAVLSDMCQPLAMDRLVCGDVGFGKTEV 640 (1151)
T ss_dssp HHHHHHHHSSSCCEEEEECCCCTTTHHH
T ss_pred HHHHHHHhcCCcCcEEEECCCCCCHHHH
Confidence 4444455557766789999999999965
No 227
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=51.42 E-value=3.4 Score=29.71 Aligned_cols=16 Identities=25% Similarity=0.449 Sum_probs=12.7
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
.+...|++|||||..+
T Consensus 25 ~~~lvGpsGsGKSTLl 40 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLI 40 (218)
T ss_dssp CEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3456799999999766
No 228
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=51.39 E-value=4.7 Score=30.84 Aligned_cols=17 Identities=35% Similarity=0.636 Sum_probs=14.1
Q ss_pred eeEEeeccCCCCCceee
Q psy12524 46 ACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 46 ~~v~~yG~~~sGKt~t~ 62 (151)
..+...|.+|+|||.++
T Consensus 101 ~vi~lvG~nGsGKTTll 117 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSL 117 (302)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred cEEEEEcCCCCCHHHHH
Confidence 35667799999999988
No 229
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=51.26 E-value=5.3 Score=27.10 Aligned_cols=17 Identities=35% Similarity=0.405 Sum_probs=13.9
Q ss_pred eeEEeeccCCCCCceee
Q psy12524 46 ACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 46 ~~v~~yG~~~sGKt~t~ 62 (151)
..+...|.+|||||..+
T Consensus 9 ~~i~l~G~~GsGKSTl~ 25 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVA 25 (175)
T ss_dssp EEEEEECSTTSCHHHHH
T ss_pred cEEEEEcCCCCCHHHHH
Confidence 35778899999998765
No 230
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=51.20 E-value=4.8 Score=28.31 Aligned_cols=16 Identities=25% Similarity=0.468 Sum_probs=13.2
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
.++..|.+|||||..+
T Consensus 14 ~i~l~G~sGsGKsTl~ 29 (204)
T 2qor_A 14 PLVVCGPSGVGKGTLI 29 (204)
T ss_dssp CEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5677899999998755
No 231
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=51.18 E-value=7.6 Score=29.64 Aligned_cols=29 Identities=10% Similarity=-0.075 Sum_probs=20.8
Q ss_pred HHHHHHhhcCCCeeEEeeccCCCCCceee
Q psy12524 34 RDILDNAFQGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 34 ~~lv~~~~~G~~~~v~~yG~~~sGKt~t~ 62 (151)
..+-..+-.|.....+.||+.|+|||.+.
T Consensus 7 ~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a 35 (305)
T 2gno_A 7 ETLKRIIEKSEGISILINGEDLSYPREVS 35 (305)
T ss_dssp HHHHHHHHTCSSEEEEEECSSSSHHHHHH
T ss_pred HHHHHHHHCCCCcEEEEECCCCCCHHHHH
Confidence 33444445566667889999999998765
No 232
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=51.14 E-value=5.8 Score=29.38 Aligned_cols=23 Identities=13% Similarity=0.052 Sum_probs=15.7
Q ss_pred HHhhcCCCeeEEeeccCCCCCceee
Q psy12524 38 DNAFQGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 38 ~~~~~G~~~~v~~yG~~~sGKt~t~ 62 (151)
..++.+.++ +..++||+|||...
T Consensus 123 ~~~l~~~~~--ll~~~tGsGKT~~~ 145 (282)
T 1rif_A 123 FEGLVNRRR--ILNLPTSAGRSLIQ 145 (282)
T ss_dssp HHHHHHSEE--EECCCTTSCHHHHH
T ss_pred HHHHhcCCe--EEEcCCCCCcHHHH
Confidence 334444443 44899999999876
No 233
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=51.13 E-value=3.9 Score=28.15 Aligned_cols=18 Identities=22% Similarity=0.464 Sum_probs=14.4
Q ss_pred CeeEEeeccCCCCCceee
Q psy12524 45 NACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 45 ~~~v~~yG~~~sGKt~t~ 62 (151)
...+...|++|+|||..+
T Consensus 33 Ge~v~L~G~nGaGKTTLl 50 (158)
T 1htw_A 33 AIMVYLNGDLGAGKTTLT 50 (158)
T ss_dssp CEEEEEECSTTSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 345667799999999877
No 234
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=50.79 E-value=6.5 Score=26.90 Aligned_cols=17 Identities=29% Similarity=0.407 Sum_probs=14.1
Q ss_pred eeEEeeccCCCCCceee
Q psy12524 46 ACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 46 ~~v~~yG~~~sGKt~t~ 62 (151)
..|+..|..|||||...
T Consensus 6 ~~I~l~G~~GsGKST~~ 22 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLS 22 (193)
T ss_dssp EEEEEEESTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46788899999998764
No 235
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=50.68 E-value=7.3 Score=30.28 Aligned_cols=28 Identities=32% Similarity=0.452 Sum_probs=20.8
Q ss_pred HHHHHhhcC---CCeeEEeeccCCCCCceee
Q psy12524 35 DILDNAFQG---YNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 35 ~lv~~~~~G---~~~~v~~yG~~~sGKt~t~ 62 (151)
+-++.++.| ....+..+|.+|||||..+
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~ 148 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLA 148 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHH
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 556777753 2446788899999999876
No 236
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=50.49 E-value=6.1 Score=34.51 Aligned_cols=16 Identities=31% Similarity=0.461 Sum_probs=14.0
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
..+..|+.|||||+++
T Consensus 377 ~~lI~GppGTGKT~~i 392 (802)
T 2xzl_A 377 LSLIQGPPGTGKTVTS 392 (802)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred CEEEECCCCCCHHHHH
Confidence 4678999999999987
No 237
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=50.29 E-value=4 Score=29.63 Aligned_cols=16 Identities=25% Similarity=0.372 Sum_probs=13.1
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
.+...|++|||||..+
T Consensus 18 ii~l~GpsGsGKSTLl 33 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLI 33 (219)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4567799999998766
No 238
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=49.99 E-value=4.1 Score=29.61 Aligned_cols=17 Identities=29% Similarity=0.350 Sum_probs=14.3
Q ss_pred eeEEeeccCCCCCceee
Q psy12524 46 ACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 46 ~~v~~yG~~~sGKt~t~ 62 (151)
..+...|.+|||||..+
T Consensus 28 ~~i~l~G~~GsGKSTl~ 44 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVC 44 (246)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 46778899999999766
No 239
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=49.50 E-value=3.6 Score=32.18 Aligned_cols=19 Identities=42% Similarity=0.485 Sum_probs=14.4
Q ss_pred cCCCeeEEeeccCCCCCceee
Q psy12524 42 QGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 42 ~G~~~~v~~yG~~~sGKt~t~ 62 (151)
.|.. +...|.+|||||.++
T Consensus 174 ~G~~--i~ivG~sGsGKSTll 192 (361)
T 2gza_A 174 LERV--IVVAGETGSGKTTLM 192 (361)
T ss_dssp TTCC--EEEEESSSSCHHHHH
T ss_pred cCCE--EEEECCCCCCHHHHH
Confidence 3543 455699999999887
No 240
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=49.41 E-value=5.9 Score=27.06 Aligned_cols=16 Identities=25% Similarity=0.503 Sum_probs=13.4
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
.++..|..|||||...
T Consensus 6 ~I~l~G~~GsGKST~~ 21 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQA 21 (186)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5778899999998754
No 241
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=49.31 E-value=8.9 Score=33.62 Aligned_cols=65 Identities=14% Similarity=0.170 Sum_probs=40.4
Q ss_pred CCCCCHHHHHHHHhHHHHHH-hhcCC----CeeEEeeccCCCCCceeecc------C-----------CCCCCcHHHHHH
Q psy12524 20 PNFASQEKVFDALGRDILDN-AFQGY----NACIFAYGQTGSGKSYTMMG------S-----------QDNKGIIPRLCD 77 (151)
Q Consensus 20 ~~~~~q~~vy~~~~~~lv~~-~~~G~----~~~v~~yG~~~sGKt~t~~G------~-----------~~~~Gli~~~~~ 77 (151)
+-+.--+++-+.+..|+-.. .+.+. ...|+.||+.|+|||....- . ....|-....++
T Consensus 208 Gl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk~~gese~~lr 287 (806)
T 3cf2_A 208 GCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLR 287 (806)
T ss_dssp SCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSSCTTHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhcccchHHHHHHH
Confidence 33444455555555555432 44433 34699999999999977621 0 123566778888
Q ss_pred HHHHHHH
Q psy12524 78 SLFDLIA 84 (151)
Q Consensus 78 ~lf~~~~ 84 (151)
.+|+...
T Consensus 288 ~lF~~A~ 294 (806)
T 3cf2_A 288 KAFEEAE 294 (806)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
Confidence 8888754
No 242
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=49.26 E-value=8.3 Score=30.62 Aligned_cols=23 Identities=22% Similarity=0.091 Sum_probs=16.8
Q ss_pred HHhhcCCCeeEEeeccCCCCCceee
Q psy12524 38 DNAFQGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 38 ~~~~~G~~~~v~~yG~~~sGKt~t~ 62 (151)
+.++.+.+ ++..+.||+|||...
T Consensus 103 ~~i~~~~~--~ll~~~TGsGKT~~~ 125 (472)
T 2fwr_A 103 ERWLVDKR--GCIVLPTGSGKTHVA 125 (472)
T ss_dssp HHHTTTTE--EEEECCTTSCHHHHH
T ss_pred HHHHhcCC--EEEEeCCCCCHHHHH
Confidence 44555544 677889999999876
No 243
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=49.15 E-value=4.2 Score=34.02 Aligned_cols=18 Identities=33% Similarity=0.464 Sum_probs=15.1
Q ss_pred CeeEEeeccCCCCCceee
Q psy12524 45 NACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 45 ~~~v~~yG~~~sGKt~t~ 62 (151)
+..++..|..|||||+++
T Consensus 204 ~~~~~I~G~pGTGKTt~i 221 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTT 221 (574)
T ss_dssp CSEEEEECCTTSCHHHHH
T ss_pred CCEEEEEcCCCCCHHHHH
Confidence 346678899999999987
No 244
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=48.85 E-value=4.4 Score=33.57 Aligned_cols=18 Identities=22% Similarity=0.329 Sum_probs=15.2
Q ss_pred CeeEEeeccCCCCCceee
Q psy12524 45 NACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 45 ~~~v~~yG~~~sGKt~t~ 62 (151)
...++.+|++|+|||.++
T Consensus 108 g~~vll~Gp~GtGKTtla 125 (543)
T 3m6a_A 108 GPILCLAGPPGVGKTSLA 125 (543)
T ss_dssp SCEEEEESSSSSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 446889999999999876
No 245
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=48.79 E-value=3.7 Score=31.77 Aligned_cols=16 Identities=38% Similarity=0.601 Sum_probs=13.4
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
.+...|.+|||||.++
T Consensus 173 ~v~i~G~~GsGKTTll 188 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYI 188 (330)
T ss_dssp CEEEEESTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4567799999999877
No 246
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=48.67 E-value=7.8 Score=29.38 Aligned_cols=28 Identities=32% Similarity=0.393 Sum_probs=21.4
Q ss_pred HHHHHhhc-CC--CeeEEeeccCCCCCceee
Q psy12524 35 DILDNAFQ-GY--NACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 35 ~lv~~~~~-G~--~~~v~~yG~~~sGKt~t~ 62 (151)
+-++.++. |. ...++.+|.+|+|||..+
T Consensus 85 ~~LD~~l~GGl~~g~i~~i~G~~gsGKT~la 115 (322)
T 2i1q_A 85 SELDSVLGGGLESQSVTEFAGVFGSGKTQIM 115 (322)
T ss_dssp HHHHHHTTSSEETTEEEEEEESTTSSHHHHH
T ss_pred hhHHHhcCCCccCCeEEEEECCCCCCHHHHH
Confidence 56677775 33 456889999999999776
No 247
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=48.55 E-value=6.2 Score=26.92 Aligned_cols=17 Identities=29% Similarity=0.585 Sum_probs=13.7
Q ss_pred eeEEeeccCCCCCceee
Q psy12524 46 ACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 46 ~~v~~yG~~~sGKt~t~ 62 (151)
..|+..|..|||||...
T Consensus 4 ~~I~l~G~~GsGKsT~a 20 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQC 20 (196)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35778899999998764
No 248
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=48.46 E-value=7.1 Score=34.09 Aligned_cols=17 Identities=29% Similarity=0.421 Sum_probs=14.5
Q ss_pred eEEeeccCCCCCceeec
Q psy12524 47 CIFAYGQTGSGKSYTMM 63 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~~ 63 (151)
..+..|+.|||||+|+.
T Consensus 373 ~~lI~GppGTGKT~ti~ 389 (800)
T 2wjy_A 373 LSLIQGPPGTGKTVTSA 389 (800)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred eEEEEcCCCCCHHHHHH
Confidence 46789999999999873
No 249
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=48.45 E-value=6.7 Score=26.62 Aligned_cols=17 Identities=35% Similarity=0.497 Sum_probs=9.8
Q ss_pred eeEEeeccCCCCCceee
Q psy12524 46 ACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 46 ~~v~~yG~~~sGKt~t~ 62 (151)
..|+..|..|||||...
T Consensus 6 ~~I~l~G~~GsGKST~a 22 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTA 22 (183)
T ss_dssp CEEEEECCC----CHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35788899999998654
No 250
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=48.40 E-value=4.2 Score=28.85 Aligned_cols=16 Identities=31% Similarity=0.592 Sum_probs=13.4
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
.+...|.+|+|||.++
T Consensus 3 ~i~i~G~nG~GKTTll 18 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLI 18 (189)
T ss_dssp CEEEESCCSSCHHHHH
T ss_pred EEEEECCCCChHHHHH
Confidence 3556799999999888
No 251
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=48.34 E-value=5.9 Score=26.99 Aligned_cols=16 Identities=31% Similarity=0.353 Sum_probs=12.8
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
.|+..|..|||||...
T Consensus 3 ~I~i~G~~GsGKsT~~ 18 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVL 18 (194)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678899999998654
No 252
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=47.93 E-value=5.8 Score=27.67 Aligned_cols=18 Identities=39% Similarity=0.477 Sum_probs=14.6
Q ss_pred CeeEEeeccCCCCCceee
Q psy12524 45 NACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 45 ~~~v~~yG~~~sGKt~t~ 62 (151)
...|+..|.+|||||...
T Consensus 18 ~~~I~l~G~~GsGKSTla 35 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVG 35 (202)
T ss_dssp SSCEEEECSTTSCHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 346788899999999765
No 253
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=47.86 E-value=9.8 Score=34.17 Aligned_cols=23 Identities=22% Similarity=0.213 Sum_probs=17.3
Q ss_pred HHHHhhcCCCeeEEeeccCCCCCce
Q psy12524 36 ILDNAFQGYNACIFAYGQTGSGKSY 60 (151)
Q Consensus 36 lv~~~~~G~~~~v~~yG~~~sGKt~ 60 (151)
.+..+++|.+ +++.++||||||.
T Consensus 64 ai~~il~g~d--vlv~apTGSGKTl 86 (1054)
T 1gku_B 64 WAKRILRKES--FAATAPTGVGKTS 86 (1054)
T ss_dssp HHHHHHTTCC--EECCCCBTSCSHH
T ss_pred HHHHHHhCCC--EEEEcCCCCCHHH
Confidence 4455677765 5788899999994
No 254
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=47.84 E-value=4.1 Score=29.85 Aligned_cols=18 Identities=22% Similarity=0.202 Sum_probs=14.7
Q ss_pred CeeEEeeccCCCCCceee
Q psy12524 45 NACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 45 ~~~v~~yG~~~sGKt~t~ 62 (151)
...++.+|..|+|||..+
T Consensus 12 G~i~litG~mGsGKTT~l 29 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAEL 29 (223)
T ss_dssp CEEEEEECSTTSCHHHHH
T ss_pred cEEEEEECCCCCcHHHHH
Confidence 346677899999999877
No 255
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=47.70 E-value=4.3 Score=29.10 Aligned_cols=16 Identities=38% Similarity=0.590 Sum_probs=13.3
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
..+..|..|||||+.+
T Consensus 7 i~l~tG~pGsGKT~~a 22 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKM 22 (199)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEEeCCCCCHHHHH
Confidence 3567899999999976
No 256
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=47.52 E-value=20 Score=28.88 Aligned_cols=18 Identities=39% Similarity=0.447 Sum_probs=14.5
Q ss_pred CeeEEeeccCCCCCceee
Q psy12524 45 NACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 45 ~~~v~~yG~~~sGKt~t~ 62 (151)
...++..|.+|+|||.++
T Consensus 97 ~~vI~lvG~~GsGKTTt~ 114 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTA 114 (433)
T ss_dssp SEEEEECCCTTSCHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 345666799999999987
No 257
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=47.47 E-value=7.4 Score=29.73 Aligned_cols=28 Identities=29% Similarity=0.433 Sum_probs=20.9
Q ss_pred HHHHHhhc-CC--CeeEEeeccCCCCCceee
Q psy12524 35 DILDNAFQ-GY--NACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 35 ~lv~~~~~-G~--~~~v~~yG~~~sGKt~t~ 62 (151)
+-++.++. |. ...+..+|.+|+|||..+
T Consensus 94 ~~LD~~L~GGl~~G~i~~i~G~~GsGKT~la 124 (324)
T 2z43_A 94 QALDGLLAGGIETRTMTEFFGEFGSGKTQLC 124 (324)
T ss_dssp HHHHHHTTTSEETTSEEEEEESTTSSHHHHH
T ss_pred hhHHHhcCCCCCCCcEEEEECCCCCCHhHHH
Confidence 55677775 33 346788999999999776
No 258
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=47.43 E-value=4.8 Score=29.49 Aligned_cols=16 Identities=38% Similarity=0.573 Sum_probs=13.0
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
.+...|++|||||..+
T Consensus 33 ~~~iiG~nGsGKSTLl 48 (235)
T 3tif_A 33 FVSIMGPSGSGKSTML 48 (235)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 4466799999999776
No 259
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=47.39 E-value=5.1 Score=34.29 Aligned_cols=20 Identities=20% Similarity=0.348 Sum_probs=16.2
Q ss_pred CCeeEEeeccCCCCCceeec
Q psy12524 44 YNACIFAYGQTGSGKSYTMM 63 (151)
Q Consensus 44 ~~~~v~~yG~~~sGKt~t~~ 63 (151)
.+..++..|..|||||.++.
T Consensus 23 ~~g~~lV~AgAGSGKT~vL~ 42 (724)
T 1pjr_A 23 TEGPLLIMAGAGSGKTRVLT 42 (724)
T ss_dssp CSSCEEEEECTTSCHHHHHH
T ss_pred CCCCEEEEEcCCCCHHHHHH
Confidence 35567788999999999984
No 260
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=47.37 E-value=6.7 Score=27.09 Aligned_cols=17 Identities=29% Similarity=0.464 Sum_probs=14.1
Q ss_pred eeEEeeccCCCCCceee
Q psy12524 46 ACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 46 ~~v~~yG~~~sGKt~t~ 62 (151)
..++..|..|||||...
T Consensus 11 ~~I~l~G~~GsGKSTv~ 27 (184)
T 1y63_A 11 INILITGTPGTGKTSMA 27 (184)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 35788999999999764
No 261
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=47.24 E-value=5.5 Score=28.34 Aligned_cols=17 Identities=41% Similarity=0.536 Sum_probs=13.9
Q ss_pred eeEEeeccCCCCCceee
Q psy12524 46 ACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 46 ~~v~~yG~~~sGKt~t~ 62 (151)
...+.+|.+|||||..+
T Consensus 24 ~~~~I~G~NgsGKStil 40 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLL 40 (203)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred CeEEEEcCCCCCHHHHH
Confidence 34567899999999877
No 262
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=47.19 E-value=4.8 Score=29.89 Aligned_cols=21 Identities=29% Similarity=0.619 Sum_probs=17.1
Q ss_pred cCCCeeEEeeccCCCCCceee
Q psy12524 42 QGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 42 ~G~~~~v~~yG~~~sGKt~t~ 62 (151)
.|+.-.|+..|.+|+|||..+
T Consensus 5 ~g~~~~I~vvG~~g~GKSTLi 25 (274)
T 3t5d_A 5 SGFEFTLMVVGESGLGKSTLI 25 (274)
T ss_dssp --CEEEEEEEECTTSSHHHHH
T ss_pred CccEEEEEEECCCCCCHHHHH
Confidence 477788999999999999766
No 263
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=46.99 E-value=9.2 Score=31.96 Aligned_cols=21 Identities=33% Similarity=0.409 Sum_probs=16.6
Q ss_pred hhcCCCeeEEeeccCCCCCceee
Q psy12524 40 AFQGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 40 ~~~G~~~~v~~yG~~~sGKt~t~ 62 (151)
+..| ..++.+|++|+|||.++
T Consensus 57 i~~g--~~vll~Gp~GtGKTtla 77 (604)
T 3k1j_A 57 ANQK--RHVLLIGEPGTGKSMLG 77 (604)
T ss_dssp HHTT--CCEEEECCTTSSHHHHH
T ss_pred ccCC--CEEEEEeCCCCCHHHHH
Confidence 3445 36788999999999887
No 264
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=46.81 E-value=5.3 Score=31.24 Aligned_cols=23 Identities=26% Similarity=0.538 Sum_probs=20.1
Q ss_pred hhcCCCeeEEeeccCCCCCceee
Q psy12524 40 AFQGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 40 ~~~G~~~~v~~yG~~~sGKt~t~ 62 (151)
+..|.+..|...|.+|+|||..+
T Consensus 32 ~~~~~~~~I~vvG~~g~GKSTLl 54 (361)
T 2qag_A 32 VKKGFEFTLMVVGESGLGKSTLI 54 (361)
T ss_dssp HHHCCEECEEECCCTTSCHHHHH
T ss_pred ecCCCCEEEEEEcCCCCCHHHHH
Confidence 56788889999999999999766
No 265
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=46.77 E-value=3.9 Score=28.73 Aligned_cols=16 Identities=25% Similarity=0.239 Sum_probs=13.8
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
..+.+|..|+|||..+
T Consensus 5 i~vi~G~~gsGKTT~l 20 (184)
T 2orw_A 5 LTVITGPMYSGKTTEL 20 (184)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678899999999887
No 266
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=46.69 E-value=4.7 Score=30.71 Aligned_cols=17 Identities=41% Similarity=0.761 Sum_probs=14.0
Q ss_pred eeEEeeccCCCCCceee
Q psy12524 46 ACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 46 ~~v~~yG~~~sGKt~t~ 62 (151)
..+...|.+|+|||.++
T Consensus 106 ~vi~lvG~~GsGKTTl~ 122 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTTL 122 (296)
T ss_dssp SEEEEEESTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 35666799999999987
No 267
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=46.64 E-value=5.5 Score=28.74 Aligned_cols=26 Identities=23% Similarity=0.121 Sum_probs=14.8
Q ss_pred HHHhhcCCCeeEEeeccCCCCCc-eee
Q psy12524 37 LDNAFQGYNACIFAYGQTGSGKS-YTM 62 (151)
Q Consensus 37 v~~~~~G~~~~v~~yG~~~sGKt-~t~ 62 (151)
|......-.-..+-||..||||| +.|
T Consensus 12 ~~~~~~~~g~l~fiyG~MgsGKTt~Ll 38 (195)
T 1w4r_A 12 VPRGSKTRGQIQVILGPMFSGKSTELM 38 (195)
T ss_dssp -------CCEEEEEEECTTSCHHHHHH
T ss_pred cccCCCCceEEEEEECCCCCcHHHHHH
Confidence 33333333447789999999999 444
No 268
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=46.54 E-value=6.9 Score=27.38 Aligned_cols=17 Identities=29% Similarity=0.485 Sum_probs=13.6
Q ss_pred eeEEeeccCCCCCceee
Q psy12524 46 ACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 46 ~~v~~yG~~~sGKt~t~ 62 (151)
..+...|.+|||||..+
T Consensus 30 ~~i~l~G~~GsGKSTl~ 46 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIA 46 (200)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 35667799999999764
No 269
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=46.44 E-value=5 Score=29.71 Aligned_cols=18 Identities=33% Similarity=0.624 Sum_probs=15.6
Q ss_pred eeEEeeccCCCCCceeec
Q psy12524 46 ACIFAYGQTGSGKSYTMM 63 (151)
Q Consensus 46 ~~v~~yG~~~sGKt~t~~ 63 (151)
..++..|..|+|||+++.
T Consensus 7 l~I~~~~kgGvGKTt~a~ 24 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAML 24 (228)
T ss_dssp EEEEEESSTTSSHHHHHH
T ss_pred EEEEEECCCCCcHHHHHH
Confidence 468889999999999973
No 270
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=46.43 E-value=6.5 Score=26.43 Aligned_cols=16 Identities=31% Similarity=0.424 Sum_probs=13.2
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
.|+..|..|||||...
T Consensus 4 ~I~l~G~~GsGKsT~a 19 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVG 19 (173)
T ss_dssp CEEEESCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4678899999998764
No 271
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=46.33 E-value=11 Score=29.27 Aligned_cols=24 Identities=21% Similarity=0.167 Sum_probs=17.9
Q ss_pred HHHHhhcCCCeeEEeeccCCCCCceee
Q psy12524 36 ILDNAFQGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 36 lv~~~~~G~~~~v~~yG~~~sGKt~t~ 62 (151)
.+..++.| .++...+||+|||...
T Consensus 17 ~i~~~~~~---~~ll~~~tG~GKT~~~ 40 (494)
T 1wp9_A 17 IYAKCKET---NCLIVLPTGLGKTLIA 40 (494)
T ss_dssp HHHHGGGS---CEEEECCTTSCHHHHH
T ss_pred HHHHHhhC---CEEEEcCCCCCHHHHH
Confidence 44556667 4567789999999876
No 272
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=46.23 E-value=8.9 Score=30.52 Aligned_cols=16 Identities=19% Similarity=0.200 Sum_probs=13.8
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
.++..|+||||||...
T Consensus 4 ~~lv~a~TGsGKT~~~ 19 (431)
T 2v6i_A 4 LTVLDLHPGAGKTRRV 19 (431)
T ss_dssp EEEEECCTTSCTTTTH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 5688899999999874
No 273
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=46.18 E-value=4.5 Score=26.44 Aligned_cols=16 Identities=31% Similarity=0.374 Sum_probs=13.8
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
.|+..|.+|+|||..+
T Consensus 5 ~i~v~G~~~~GKssl~ 20 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALT 20 (166)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5788999999999875
No 274
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=46.14 E-value=8.3 Score=26.58 Aligned_cols=20 Identities=35% Similarity=0.250 Sum_probs=15.5
Q ss_pred CCCeeEEeeccCCCCCceee
Q psy12524 43 GYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 43 G~~~~v~~yG~~~sGKt~t~ 62 (151)
+....|...|..|||||...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~ 25 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVA 25 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHH
T ss_pred cCceEEEEECCCCCCHHHHH
Confidence 34556778899999998765
No 275
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=45.99 E-value=11 Score=31.21 Aligned_cols=17 Identities=35% Similarity=0.540 Sum_probs=14.1
Q ss_pred eeEEeeccCCCCCceee
Q psy12524 46 ACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 46 ~~v~~yG~~~sGKt~t~ 62 (151)
..+...|.+|||||.++
T Consensus 294 eVI~LVGpNGSGKTTLl 310 (503)
T 2yhs_A 294 FVILMVGVNGVGKTTTI 310 (503)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCcccHHHHH
Confidence 35667799999999887
No 276
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=45.94 E-value=6.6 Score=26.70 Aligned_cols=16 Identities=44% Similarity=0.409 Sum_probs=13.2
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
.++..|..|||||...
T Consensus 6 ~i~i~G~~GsGKsTla 21 (175)
T 1via_A 6 NIVFIGFMGSGKSTLA 21 (175)
T ss_dssp CEEEECCTTSCHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 4677899999998764
No 277
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=45.81 E-value=5.2 Score=27.29 Aligned_cols=19 Identities=32% Similarity=0.541 Sum_probs=15.7
Q ss_pred CCeeEEeeccCCCCCceee
Q psy12524 44 YNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 44 ~~~~v~~yG~~~sGKt~t~ 62 (151)
....|+..|.+|+|||..+
T Consensus 47 ~~~~i~vvG~~g~GKSsll 65 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLL 65 (193)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 3447899999999999776
No 278
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=45.62 E-value=8.3 Score=30.05 Aligned_cols=28 Identities=36% Similarity=0.423 Sum_probs=20.8
Q ss_pred HHHHHhhc--CC--CeeEEeeccCCCCCceee
Q psy12524 35 DILDNAFQ--GY--NACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 35 ~lv~~~~~--G~--~~~v~~yG~~~sGKt~t~ 62 (151)
+-++.++. |. ...+..+|.+|+|||..+
T Consensus 47 ~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLa 78 (349)
T 2zr9_A 47 ISLDVALGIGGLPRGRVIEIYGPESSGKTTVA 78 (349)
T ss_dssp HHHHHHTSSSSEETTSEEEEEESTTSSHHHHH
T ss_pred HHHHHHhccCCccCCeEEEEECCCCCCHHHHH
Confidence 45567776 33 446788999999999875
No 279
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=45.51 E-value=4.9 Score=26.32 Aligned_cols=16 Identities=25% Similarity=0.345 Sum_probs=13.5
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
.++..|.+|+|||..+
T Consensus 3 ki~v~G~~~~GKSsli 18 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLF 18 (161)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678899999999776
No 280
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=45.45 E-value=6.6 Score=30.94 Aligned_cols=17 Identities=35% Similarity=0.636 Sum_probs=14.2
Q ss_pred eeEEeeccCCCCCceee
Q psy12524 46 ACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 46 ~~v~~yG~~~sGKt~t~ 62 (151)
..+...|.+|||||.++
T Consensus 158 ~vi~lvG~nGsGKTTll 174 (359)
T 2og2_A 158 AVIMIVGVNGGGKTTSL 174 (359)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred eEEEEEcCCCChHHHHH
Confidence 35667799999999988
No 281
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=45.22 E-value=12 Score=33.46 Aligned_cols=24 Identities=25% Similarity=0.357 Sum_probs=17.6
Q ss_pred HHHHhhcCCCeeEEeeccCCCCCcee
Q psy12524 36 ILDNAFQGYNACIFAYGQTGSGKSYT 61 (151)
Q Consensus 36 lv~~~~~G~~~~v~~yG~~~sGKt~t 61 (151)
.+..++.|.+ +++.++||||||..
T Consensus 47 aI~~il~g~~--vlv~apTGsGKTlv 70 (997)
T 4a4z_A 47 AVYHLEQGDS--VFVAAHTSAGKTVV 70 (997)
T ss_dssp HHHHHHTTCE--EEEECCTTSCSHHH
T ss_pred HHHHHHcCCC--EEEEECCCCcHHHH
Confidence 3455666754 67889999999954
No 282
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=45.19 E-value=7 Score=26.72 Aligned_cols=16 Identities=38% Similarity=0.295 Sum_probs=13.3
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
.|+..|..|||||...
T Consensus 4 ~I~l~G~~GsGKsT~a 19 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIG 19 (184)
T ss_dssp SEEEECSTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4778899999998764
No 283
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=45.12 E-value=5.2 Score=28.08 Aligned_cols=16 Identities=38% Similarity=0.293 Sum_probs=12.7
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
.+-..|.+|||||..+
T Consensus 8 ~i~i~G~~GsGKSTl~ 23 (211)
T 3asz_A 8 VIGIAGGTASGKTTLA 23 (211)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4556699999999766
No 284
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=45.09 E-value=24 Score=28.59 Aligned_cols=18 Identities=33% Similarity=0.530 Sum_probs=15.4
Q ss_pred CeeEEeeccCCCCCceee
Q psy12524 45 NACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 45 ~~~v~~yG~~~sGKt~t~ 62 (151)
...++..|.+|+|||.++
T Consensus 100 p~vIlivG~~G~GKTTt~ 117 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTV 117 (443)
T ss_dssp SEEEEEECCTTSSHHHHH
T ss_pred CeEEEEECcCCCCHHHHH
Confidence 456778899999999997
No 285
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=44.77 E-value=6.7 Score=27.84 Aligned_cols=15 Identities=40% Similarity=0.463 Sum_probs=12.6
Q ss_pred EEeeccCCCCCceee
Q psy12524 48 IFAYGQTGSGKSYTM 62 (151)
Q Consensus 48 v~~yG~~~sGKt~t~ 62 (151)
++.+|.++||||...
T Consensus 2 ilV~Gg~~SGKS~~A 16 (180)
T 1c9k_A 2 ILVTGGARSGKSRHA 16 (180)
T ss_dssp EEEEECTTSSHHHHH
T ss_pred EEEECCCCCcHHHHH
Confidence 678999999998654
No 286
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=44.26 E-value=7.9 Score=25.88 Aligned_cols=16 Identities=38% Similarity=0.318 Sum_probs=12.9
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
.|+..|..|||||...
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVG 17 (168)
T ss_dssp EEEEESCTTSCHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 3677899999998754
No 287
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=44.09 E-value=5.3 Score=28.37 Aligned_cols=15 Identities=40% Similarity=0.645 Sum_probs=12.9
Q ss_pred EEeeccCCCCCceee
Q psy12524 48 IFAYGQTGSGKSYTM 62 (151)
Q Consensus 48 v~~yG~~~sGKt~t~ 62 (151)
|+..|++|+||+..+
T Consensus 4 IVi~GPSG~GK~Tl~ 18 (186)
T 1ex7_A 4 IVISGPSGTGKSTLL 18 (186)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 677899999998766
No 288
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=44.07 E-value=6.9 Score=26.47 Aligned_cols=20 Identities=15% Similarity=0.287 Sum_probs=16.2
Q ss_pred CCCeeEEeeccCCCCCceee
Q psy12524 43 GYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 43 G~~~~v~~yG~~~sGKt~t~ 62 (151)
.....|+..|.+++|||..+
T Consensus 16 ~~~~~i~v~G~~~~GKssl~ 35 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTIL 35 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHH
T ss_pred CCeeEEEEECCCCCCHHHHH
Confidence 45567889999999999876
No 289
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=43.81 E-value=5.4 Score=26.24 Aligned_cols=17 Identities=24% Similarity=0.309 Sum_probs=14.4
Q ss_pred eeEEeeccCCCCCceee
Q psy12524 46 ACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 46 ~~v~~yG~~~sGKt~t~ 62 (151)
..|+..|.+|+|||..+
T Consensus 6 ~~i~v~G~~~~GKssl~ 22 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMI 22 (168)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred EEEEEECcCCCCHHHHH
Confidence 45788899999999876
No 290
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=43.50 E-value=9.2 Score=26.52 Aligned_cols=28 Identities=14% Similarity=0.210 Sum_probs=19.8
Q ss_pred HHHHHh-hcCCCeeEEeeccCCCCCceee
Q psy12524 35 DILDNA-FQGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 35 ~lv~~~-~~G~~~~v~~yG~~~sGKt~t~ 62 (151)
++++.+ +.-....|...|.+|+|||..+
T Consensus 14 ~~l~~~~~~~~~~ki~lvG~~~vGKSsLi 42 (198)
T 1f6b_A 14 SVLQFLGLYKKTGKLVFLGLDNAGKTTLL 42 (198)
T ss_dssp HHHHHHTCTTCCEEEEEEEETTSSHHHHH
T ss_pred HHHHHhhccCCCcEEEEECCCCCCHHHHH
Confidence 344444 3344567889999999999877
No 291
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=43.49 E-value=5.5 Score=34.72 Aligned_cols=41 Identities=22% Similarity=0.285 Sum_probs=27.8
Q ss_pred CeeEEeeccCCCCCceeecc---C--------------CCCCCcHHHHHHHHHHHHHh
Q psy12524 45 NACIFAYGQTGSGKSYTMMG---S--------------QDNKGIIPRLCDSLFDLIAK 85 (151)
Q Consensus 45 ~~~v~~yG~~~sGKt~t~~G---~--------------~~~~Gli~~~~~~lf~~~~~ 85 (151)
...++.+|.+|||||..+.. . ....|-....+..+|+....
T Consensus 238 ~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~ 295 (806)
T 1ypw_A 238 PRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEK 295 (806)
T ss_dssp CCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSSSSTTHHHHHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhhhhhhhHHHHHHHHHHHHHh
Confidence 34689999999999977632 0 12346666677778876653
No 292
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=43.47 E-value=14 Score=29.23 Aligned_cols=18 Identities=22% Similarity=0.206 Sum_probs=14.7
Q ss_pred CeeEEeeccCCCCCceee
Q psy12524 45 NACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 45 ~~~v~~yG~~~sGKt~t~ 62 (151)
...+..+|++|+|||..+
T Consensus 169 ~~~i~l~G~~GsGKSTl~ 186 (377)
T 1svm_A 169 KRYWLFKGPIDSGKTTLA 186 (377)
T ss_dssp CCEEEEECSTTSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 346778999999998766
No 293
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=43.37 E-value=9.8 Score=30.55 Aligned_cols=15 Identities=27% Similarity=0.222 Sum_probs=13.0
Q ss_pred eEEeeccCCCCCcee
Q psy12524 47 CIFAYGQTGSGKSYT 61 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t 61 (151)
.++..++||||||..
T Consensus 23 ~vlv~a~TGsGKT~~ 37 (459)
T 2z83_A 23 MTVLDLHPGSGKTRK 37 (459)
T ss_dssp EEEECCCTTSCTTTT
T ss_pred cEEEECCCCCCHHHH
Confidence 467889999999987
No 294
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=43.10 E-value=9.8 Score=27.97 Aligned_cols=17 Identities=35% Similarity=0.333 Sum_probs=14.0
Q ss_pred eeEEeeccCCCCCceee
Q psy12524 46 ACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 46 ~~v~~yG~~~sGKt~t~ 62 (151)
..|+..|..|||||...
T Consensus 5 ~lIvl~G~pGSGKSTla 21 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFS 21 (260)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred EEEEEEcCCCCCHHHHH
Confidence 46788899999998754
No 295
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=42.91 E-value=6.2 Score=28.37 Aligned_cols=16 Identities=25% Similarity=0.445 Sum_probs=13.1
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
.+...|++|+|||..+
T Consensus 21 ~ivl~GPSGaGKsTL~ 36 (197)
T 3ney_A 21 TLVLIGASGVGRSHIK 36 (197)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECcCCCCHHHHH
Confidence 4566899999998765
No 296
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=42.88 E-value=10 Score=30.43 Aligned_cols=23 Identities=13% Similarity=-0.011 Sum_probs=16.5
Q ss_pred HHhhcCCCeeEEeeccCCCCCceee
Q psy12524 38 DNAFQGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 38 ~~~~~G~~~~v~~yG~~~sGKt~t~ 62 (151)
+.++.+. .++..+.||+|||.+.
T Consensus 123 ~~~~~~~--~~ll~~~tGsGKT~~~ 145 (510)
T 2oca_A 123 FEGLVNR--RRILNLPTSAGRSLIQ 145 (510)
T ss_dssp HHHHHHS--EEEEECCSTTTHHHHH
T ss_pred HHHHhcC--CcEEEeCCCCCHHHHH
Confidence 3344443 3577899999999886
No 297
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=42.53 E-value=7 Score=30.56 Aligned_cols=16 Identities=31% Similarity=0.434 Sum_probs=13.0
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
..+..|++|||||..+
T Consensus 25 ~~~i~G~NGaGKTTll 40 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLF 40 (365)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 3457899999999766
No 298
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=42.53 E-value=5.7 Score=33.45 Aligned_cols=17 Identities=41% Similarity=0.608 Sum_probs=14.3
Q ss_pred eeEEeeccCCCCCceee
Q psy12524 46 ACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 46 ~~v~~yG~~~sGKt~t~ 62 (151)
.-++..|.||||||..+
T Consensus 215 pHlLIaG~TGSGKS~~L 231 (574)
T 2iut_A 215 PHLLVAGTTGSGKSVGV 231 (574)
T ss_dssp CCEEEECCTTSSHHHHH
T ss_pred CeeEEECCCCCCHHHHH
Confidence 35689999999998876
No 299
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=42.45 E-value=14 Score=31.88 Aligned_cols=25 Identities=32% Similarity=0.541 Sum_probs=18.6
Q ss_pred HHHHhhcCCCeeEEeeccCCCCCceee
Q psy12524 36 ILDNAFQGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 36 lv~~~~~G~~~~v~~yG~~~sGKt~t~ 62 (151)
.+..++.|.+ ++..++||||||...
T Consensus 256 ~i~~~l~~~~--~ll~~~TGsGKTl~~ 280 (797)
T 4a2q_A 256 LAQPAINGKN--ALICAPTGSGKTFVS 280 (797)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHHhCCC--EEEEeCCCChHHHHH
Confidence 4455677766 467789999999764
No 300
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=42.35 E-value=7.1 Score=32.03 Aligned_cols=25 Identities=32% Similarity=0.533 Sum_probs=17.7
Q ss_pred HHHHhhcCCCeeEEeeccCCCCCceee
Q psy12524 36 ILDNAFQGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 36 lv~~~~~G~~~~v~~yG~~~sGKt~t~ 62 (151)
.++.+++|.++ ++..+||+|||...
T Consensus 33 ~i~~il~g~d~--lv~apTGsGKTl~~ 57 (523)
T 1oyw_A 33 IIDTVLSGRDC--LVVMPTGGGKSLCY 57 (523)
T ss_dssp HHHHHHTTCCE--EEECSCHHHHHHHH
T ss_pred HHHHHHcCCCE--EEECCCCcHHHHHH
Confidence 44556677764 55679999999743
No 301
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=42.30 E-value=8.5 Score=29.92 Aligned_cols=17 Identities=35% Similarity=0.538 Sum_probs=13.9
Q ss_pred eeEEeeccCCCCCceee
Q psy12524 46 ACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 46 ~~v~~yG~~~sGKt~t~ 62 (151)
..++..|.+|||||...
T Consensus 6 ~~i~i~GptGsGKTtla 22 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLA 22 (323)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 35788999999998754
No 302
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=42.24 E-value=6 Score=29.30 Aligned_cols=17 Identities=24% Similarity=0.161 Sum_probs=14.2
Q ss_pred eeEEeeccCCCCCceee
Q psy12524 46 ACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 46 ~~v~~yG~~~sGKt~t~ 62 (151)
..+..+|.+|+|||..+
T Consensus 31 ~i~~i~G~~GsGKTtl~ 47 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLA 47 (279)
T ss_dssp SEEEEEESTTSSHHHHH
T ss_pred CEEEEEcCCCCCHHHHH
Confidence 35678899999999876
No 303
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=42.21 E-value=8.9 Score=26.61 Aligned_cols=18 Identities=33% Similarity=0.571 Sum_probs=14.3
Q ss_pred CeeEEeeccCCCCCceee
Q psy12524 45 NACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 45 ~~~v~~yG~~~sGKt~t~ 62 (151)
...|+..|..|||||...
T Consensus 15 ~~~I~l~G~~GsGKsT~~ 32 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQC 32 (203)
T ss_dssp CEEEEEECSTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 345778899999998754
No 304
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=42.19 E-value=6 Score=28.67 Aligned_cols=15 Identities=40% Similarity=0.603 Sum_probs=12.2
Q ss_pred EEeeccCCCCCceee
Q psy12524 48 IFAYGQTGSGKSYTM 62 (151)
Q Consensus 48 v~~yG~~~sGKt~t~ 62 (151)
+...|++|||||..+
T Consensus 33 ~~iiG~nGsGKSTLl 47 (224)
T 2pcj_A 33 VSIIGASGSGKSTLL 47 (224)
T ss_dssp EEEEECTTSCHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 456699999999776
No 305
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=42.18 E-value=8.6 Score=30.14 Aligned_cols=16 Identities=38% Similarity=0.511 Sum_probs=13.7
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
.|+..|+||||||...
T Consensus 42 lIvI~GPTgsGKTtLa 57 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLS 57 (339)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 6888999999998754
No 306
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=42.15 E-value=8.5 Score=26.44 Aligned_cols=16 Identities=44% Similarity=0.632 Sum_probs=13.5
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
.|+..|..|||||...
T Consensus 14 ~I~l~G~~GsGKsT~a 29 (199)
T 2bwj_A 14 IIFIIGGPGSGKGTQC 29 (199)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5778899999998765
No 307
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=42.13 E-value=6.4 Score=28.96 Aligned_cols=16 Identities=38% Similarity=0.530 Sum_probs=13.2
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
.+...|++|||||..+
T Consensus 26 ~~~liG~nGsGKSTLl 41 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFL 41 (240)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4556799999999877
No 308
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=42.08 E-value=6 Score=26.02 Aligned_cols=16 Identities=25% Similarity=0.385 Sum_probs=13.9
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
.|+..|.+|+|||..+
T Consensus 5 ~i~v~G~~~~GKssli 20 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIV 20 (170)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5778899999999876
No 309
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=41.96 E-value=23 Score=30.04 Aligned_cols=39 Identities=26% Similarity=0.363 Sum_probs=27.2
Q ss_pred CCCCCHHHHHHHHhHHHHHHhhcCCCeeEEeeccCCCCCceeec
Q psy12524 20 PNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYTMM 63 (151)
Q Consensus 20 ~~~~~q~~vy~~~~~~lv~~~~~G~~~~v~~yG~~~sGKt~t~~ 63 (151)
.+.-.|..-++. +++.+-.|... .+..|.+|||||++|.
T Consensus 8 ~~~~~q~~ai~~----l~~~~~~~~~~-~~l~g~tgs~kt~~~a 46 (664)
T 1c4o_A 8 SPKGDQPKAIAG----LVEALRDGERF-VTLLGATGTGKTVTMA 46 (664)
T ss_dssp CCCTTHHHHHHH----HHHHHHTTCSE-EEEEECTTSCHHHHHH
T ss_pred CCCCCChHHHHH----HHHHHhcCCCc-EEEEcCCCcHHHHHHH
Confidence 566777766554 45565566543 3456999999999995
No 310
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=41.95 E-value=8.6 Score=26.12 Aligned_cols=16 Identities=38% Similarity=0.669 Sum_probs=13.2
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
.|+..|..|||||...
T Consensus 8 ~I~l~G~~GsGKsT~~ 23 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQC 23 (194)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5777899999998754
No 311
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=41.92 E-value=8.9 Score=29.90 Aligned_cols=28 Identities=25% Similarity=0.392 Sum_probs=20.6
Q ss_pred HHHHHhhc-CCCeeEEeeccCCCCCceee
Q psy12524 35 DILDNAFQ-GYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 35 ~lv~~~~~-G~~~~v~~yG~~~sGKt~t~ 62 (151)
..++.++. +....+-..|.+|+|||.++
T Consensus 60 ~ald~ll~i~~Gq~~gIiG~nGaGKTTLl 88 (347)
T 2obl_A 60 RAIDGLLTCGIGQRIGIFAGSGVGKSTLL 88 (347)
T ss_dssp HHHHHHSCEETTCEEEEEECTTSSHHHHH
T ss_pred EEEEeeeeecCCCEEEEECCCCCCHHHHH
Confidence 45666654 55556677899999999877
No 312
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=41.88 E-value=7.8 Score=27.63 Aligned_cols=17 Identities=29% Similarity=0.337 Sum_probs=13.9
Q ss_pred eeEEeeccCCCCCceee
Q psy12524 46 ACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 46 ~~v~~yG~~~sGKt~t~ 62 (151)
..|+..|..|||||...
T Consensus 8 ~~I~l~G~~GsGKsT~a 24 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVS 24 (227)
T ss_dssp CEEEEEECTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 35788899999998765
No 313
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=41.77 E-value=8.4 Score=27.05 Aligned_cols=15 Identities=33% Similarity=0.514 Sum_probs=12.4
Q ss_pred EEeeccCCCCCceee
Q psy12524 48 IFAYGQTGSGKSYTM 62 (151)
Q Consensus 48 v~~yG~~~sGKt~t~ 62 (151)
|+..|..|||||...
T Consensus 3 I~l~G~~GsGKsT~a 17 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQA 17 (216)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 567899999998764
No 314
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=41.50 E-value=10 Score=25.50 Aligned_cols=17 Identities=24% Similarity=0.511 Sum_probs=9.3
Q ss_pred eeEEeeccCCCCCceee
Q psy12524 46 ACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 46 ~~v~~yG~~~sGKt~t~ 62 (151)
..|+..|..++|||..+
T Consensus 9 ~ki~v~G~~~~GKssl~ 25 (183)
T 2fu5_C 9 FKLLLIGDSGVGKTCVL 25 (183)
T ss_dssp EEEEEECCCCC------
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45788899999999887
No 315
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=41.50 E-value=6.2 Score=27.33 Aligned_cols=17 Identities=29% Similarity=0.450 Sum_probs=14.1
Q ss_pred eeEEeeccCCCCCceee
Q psy12524 46 ACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 46 ~~v~~yG~~~sGKt~t~ 62 (151)
..+...|.+|+|||..+
T Consensus 6 ~kv~lvG~~g~GKSTLl 22 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLL 22 (199)
T ss_dssp EEEEEESSTTSSHHHHH
T ss_pred EEEEEECcCCCCHHHHH
Confidence 35678899999999776
No 316
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=41.48 E-value=8.8 Score=26.28 Aligned_cols=17 Identities=41% Similarity=0.599 Sum_probs=13.9
Q ss_pred eeEEeeccCCCCCceee
Q psy12524 46 ACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 46 ~~v~~yG~~~sGKt~t~ 62 (151)
..|+..|..|||||...
T Consensus 10 ~~I~l~G~~GsGKsT~~ 26 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQC 26 (196)
T ss_dssp CEEEEEECTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 35778899999999755
No 317
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=41.45 E-value=6.7 Score=28.70 Aligned_cols=16 Identities=38% Similarity=0.540 Sum_probs=13.0
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
.+...|.+|||||..+
T Consensus 33 ~~~i~G~nGsGKSTLl 48 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLL 48 (237)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4466799999999876
No 318
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=41.40 E-value=11 Score=26.13 Aligned_cols=20 Identities=25% Similarity=0.479 Sum_probs=15.6
Q ss_pred CCCeeEEeeccCCCCCceee
Q psy12524 43 GYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 43 G~~~~v~~yG~~~sGKt~t~ 62 (151)
.....|+..|..|||||...
T Consensus 18 ~~~~~I~l~G~~GsGKST~a 37 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQA 37 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHH
Confidence 34456888899999999765
No 319
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=41.36 E-value=6.7 Score=29.04 Aligned_cols=16 Identities=38% Similarity=0.561 Sum_probs=13.0
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
.+...|++|||||..+
T Consensus 35 ~~~liG~nGsGKSTLl 50 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLI 50 (257)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3456799999999877
No 320
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=41.33 E-value=11 Score=30.16 Aligned_cols=20 Identities=20% Similarity=0.257 Sum_probs=15.2
Q ss_pred hcCCCeeEEeeccCCCCCceee
Q psy12524 41 FQGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 41 ~~G~~~~v~~yG~~~sGKt~t~ 62 (151)
.+|.+ ++..|+||||||...
T Consensus 6 ~~g~~--vlv~a~TGSGKT~~~ 25 (440)
T 1yks_A 6 KKGMT--TVLDFHPGAGKTRRF 25 (440)
T ss_dssp STTCE--EEECCCTTSSTTTTH
T ss_pred hCCCC--EEEEcCCCCCHHHHH
Confidence 34544 578899999999884
No 321
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=41.30 E-value=6.8 Score=28.71 Aligned_cols=16 Identities=31% Similarity=0.567 Sum_probs=12.9
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
.+...|++|||||..+
T Consensus 34 ~~~l~G~nGsGKSTLl 49 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTL 49 (240)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3456799999999877
No 322
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=41.29 E-value=11 Score=26.13 Aligned_cols=17 Identities=41% Similarity=0.358 Sum_probs=13.7
Q ss_pred eeEEeeccCCCCCceee
Q psy12524 46 ACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 46 ~~v~~yG~~~sGKt~t~ 62 (151)
..|+..|..|||||...
T Consensus 5 ~~I~i~G~~GsGKsT~~ 21 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQA 21 (213)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEEcCCCCCHHHHH
Confidence 35778899999998764
No 323
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=41.29 E-value=8.5 Score=26.45 Aligned_cols=15 Identities=40% Similarity=0.632 Sum_probs=12.3
Q ss_pred EEeeccCCCCCceee
Q psy12524 48 IFAYGQTGSGKSYTM 62 (151)
Q Consensus 48 v~~yG~~~sGKt~t~ 62 (151)
|...|..|||||...
T Consensus 3 I~i~G~~GsGKsT~~ 17 (205)
T 2jaq_A 3 IAIFGTVGAGKSTIS 17 (205)
T ss_dssp EEEECCTTSCHHHHH
T ss_pred EEEECCCccCHHHHH
Confidence 567899999998754
No 324
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=41.26 E-value=7.2 Score=35.61 Aligned_cols=20 Identities=25% Similarity=0.371 Sum_probs=16.8
Q ss_pred CCeeEEeeccCCCCCceeec
Q psy12524 44 YNACIFAYGQTGSGKSYTMM 63 (151)
Q Consensus 44 ~~~~v~~yG~~~sGKt~t~~ 63 (151)
.+..++.-|..|||||++|.
T Consensus 22 ~~~~~~v~a~AGSGKT~vl~ 41 (1232)
T 3u4q_A 22 TGQDILVAAAAGSGKTAVLV 41 (1232)
T ss_dssp CSSCEEEEECTTCCHHHHHH
T ss_pred CCCCEEEEecCCCcHHHHHH
Confidence 36678888999999999983
No 325
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=41.25 E-value=9.5 Score=25.62 Aligned_cols=17 Identities=35% Similarity=0.389 Sum_probs=13.9
Q ss_pred eeEEeeccCCCCCceee
Q psy12524 46 ACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 46 ~~v~~yG~~~sGKt~t~ 62 (151)
..++..|..|||||...
T Consensus 8 ~~i~l~G~~GsGKSTva 24 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLA 24 (168)
T ss_dssp CEEEEESCTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 46778899999998754
No 326
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=41.21 E-value=9.7 Score=29.65 Aligned_cols=17 Identities=35% Similarity=0.538 Sum_probs=13.9
Q ss_pred eeEEeeccCCCCCceee
Q psy12524 46 ACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 46 ~~v~~yG~~~sGKt~t~ 62 (151)
...+-+|.||+|||-.+
T Consensus 26 gl~vi~G~NGaGKT~il 42 (371)
T 3auy_A 26 GIVAIIGENGSGKSSIF 42 (371)
T ss_dssp EEEEEEECTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 45568899999999776
No 327
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=41.08 E-value=6.3 Score=26.29 Aligned_cols=18 Identities=28% Similarity=0.436 Sum_probs=15.1
Q ss_pred CeeEEeeccCCCCCceee
Q psy12524 45 NACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 45 ~~~v~~yG~~~sGKt~t~ 62 (151)
...|+..|.+|+|||..+
T Consensus 8 ~~~i~v~G~~~~GKSsli 25 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLM 25 (182)
T ss_dssp EEEEEEECCTTSSHHHHH
T ss_pred eEEEEEECCCCCCHHHHH
Confidence 346888999999999876
No 328
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=41.05 E-value=7.4 Score=32.93 Aligned_cols=20 Identities=30% Similarity=0.444 Sum_probs=15.1
Q ss_pred hcCCCeeEEeeccCCCCCceee
Q psy12524 41 FQGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 41 ~~G~~~~v~~yG~~~sGKt~t~ 62 (151)
.+|.+ ++..++||||||...
T Consensus 38 ~~~~~--~lv~apTGsGKT~~~ 57 (702)
T 2p6r_A 38 FSGKN--LLLAMPTAAGKTLLA 57 (702)
T ss_dssp TTCSC--EEEECSSHHHHHHHH
T ss_pred hCCCc--EEEEcCCccHHHHHH
Confidence 44544 578889999999765
No 329
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=41.00 E-value=6.3 Score=28.52 Aligned_cols=15 Identities=27% Similarity=0.403 Sum_probs=12.4
Q ss_pred EEeeccCCCCCceee
Q psy12524 48 IFAYGQTGSGKSYTM 62 (151)
Q Consensus 48 v~~yG~~~sGKt~t~ 62 (151)
+...|++|||||..+
T Consensus 38 ~~iiG~NGsGKSTLl 52 (214)
T 1sgw_A 38 VNFHGPNGIGKTTLL 52 (214)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 355799999999877
No 330
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=40.95 E-value=8.6 Score=29.47 Aligned_cols=17 Identities=29% Similarity=0.511 Sum_probs=14.2
Q ss_pred eeEEeeccCCCCCceee
Q psy12524 46 ACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 46 ~~v~~yG~~~sGKt~t~ 62 (151)
..+...|.+|+|||.++
T Consensus 105 ~vi~ivG~~GsGKTTl~ 121 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSC 121 (306)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEEcCCCChHHHHH
Confidence 35677799999999887
No 331
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=40.91 E-value=4.6 Score=27.91 Aligned_cols=27 Identities=19% Similarity=0.345 Sum_probs=20.4
Q ss_pred HHHHhhcCCCeeEEeeccCCCCCceee
Q psy12524 36 ILDNAFQGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 36 lv~~~~~G~~~~v~~yG~~~sGKt~t~ 62 (151)
+.+..+......|+..|.+|+|||..+
T Consensus 20 ~~~~~~~~~~~ki~v~G~~~vGKSsLi 46 (192)
T 2b6h_A 20 LFSRIFGKKQMRILMVGLDAAGKTTIL 46 (192)
T ss_dssp GGGGTTTTSCEEEEEEESTTSSHHHHH
T ss_pred HHHHhccCCccEEEEECCCCCCHHHHH
Confidence 444455556678999999999999766
No 332
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=40.69 E-value=6.5 Score=25.91 Aligned_cols=17 Identities=41% Similarity=0.520 Sum_probs=14.3
Q ss_pred eeEEeeccCCCCCceee
Q psy12524 46 ACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 46 ~~v~~yG~~~sGKt~t~ 62 (151)
..|+..|.+|+|||..+
T Consensus 7 ~~i~v~G~~~~GKSsli 23 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIM 23 (170)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEECcCCCCHHHHH
Confidence 35788899999999776
No 333
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=40.68 E-value=6.5 Score=25.72 Aligned_cols=17 Identities=29% Similarity=0.352 Sum_probs=14.1
Q ss_pred eeEEeeccCCCCCceee
Q psy12524 46 ACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 46 ~~v~~yG~~~sGKt~t~ 62 (151)
..|+..|..|+|||..+
T Consensus 5 ~~i~v~G~~~~GKssl~ 21 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALT 21 (168)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 35788899999999766
No 334
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=40.66 E-value=6.4 Score=32.63 Aligned_cols=16 Identities=38% Similarity=0.565 Sum_probs=13.5
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
-++..|.||||||..+
T Consensus 169 HlLIaG~TGSGKSt~L 184 (512)
T 2ius_A 169 HLLVAGTTGSGASVGV 184 (512)
T ss_dssp SEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4588999999999765
No 335
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=40.65 E-value=11 Score=26.72 Aligned_cols=17 Identities=24% Similarity=0.384 Sum_probs=13.7
Q ss_pred eeEEeeccCCCCCceee
Q psy12524 46 ACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 46 ~~v~~yG~~~sGKt~t~ 62 (151)
..|+..|..|||||...
T Consensus 5 ~~I~l~G~~GsGKsT~a 21 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQA 21 (220)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 35788899999998654
No 336
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=40.59 E-value=5 Score=28.97 Aligned_cols=21 Identities=24% Similarity=0.474 Sum_probs=18.3
Q ss_pred CCeeEEeeccCCCCCceeecc
Q psy12524 44 YNACIFAYGQTGSGKSYTMMG 64 (151)
Q Consensus 44 ~~~~v~~yG~~~sGKt~t~~G 64 (151)
..+.|+.|+.+|.|||+..+|
T Consensus 27 ~~g~i~v~tG~GkGKTTaA~G 47 (196)
T 1g5t_A 27 ERGIIIVFTGNGKGKTTAAFG 47 (196)
T ss_dssp CCCCEEEEESSSSCHHHHHHH
T ss_pred cCceEEEECCCCCCHHHHHHH
Confidence 456899999999999999866
No 337
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=40.43 E-value=7.1 Score=29.10 Aligned_cols=16 Identities=50% Similarity=0.924 Sum_probs=13.0
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
.+...|.+|||||..+
T Consensus 35 ~~~liG~nGsGKSTLl 50 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLL 50 (266)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 3456799999999877
No 338
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=40.37 E-value=10 Score=27.59 Aligned_cols=18 Identities=33% Similarity=0.470 Sum_probs=14.2
Q ss_pred CeeEEeeccCCCCCceee
Q psy12524 45 NACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 45 ~~~v~~yG~~~sGKt~t~ 62 (151)
...++..|.+|+|||...
T Consensus 34 g~~ilI~GpsGsGKStLA 51 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETA 51 (205)
T ss_dssp TEEEEEECCCTTTTHHHH
T ss_pred CEEEEEECCCCCCHHHHH
Confidence 445788899999998655
No 339
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=40.24 E-value=10 Score=26.92 Aligned_cols=26 Identities=27% Similarity=0.590 Sum_probs=18.6
Q ss_pred HHHhhc-CC--CeeEEeeccCCCCCceee
Q psy12524 37 LDNAFQ-GY--NACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 37 v~~~~~-G~--~~~v~~yG~~~sGKt~t~ 62 (151)
++.++. |. ...++.+|.+|+|||..+
T Consensus 19 LD~~l~GGl~~G~l~~i~G~pG~GKT~l~ 47 (251)
T 2zts_A 19 FDELIEGGFPEGTTVLLTGGTGTGKTTFA 47 (251)
T ss_dssp TGGGTTTSEETTCEEEEECCTTSSHHHHH
T ss_pred HHHhhcCCCCCCeEEEEEeCCCCCHHHHH
Confidence 455564 43 446788999999999765
No 340
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=40.15 E-value=8.7 Score=26.69 Aligned_cols=16 Identities=38% Similarity=0.341 Sum_probs=12.9
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
.|...|.+|||||...
T Consensus 3 ~i~i~G~~GsGKSTl~ 18 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVA 18 (204)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 3667899999999765
No 341
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=40.05 E-value=8.4 Score=26.89 Aligned_cols=20 Identities=30% Similarity=0.521 Sum_probs=16.4
Q ss_pred CCCeeEEeeccCCCCCceee
Q psy12524 43 GYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 43 G~~~~v~~yG~~~sGKt~t~ 62 (151)
+....|+..|.+|+|||..+
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~ 29 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLL 29 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 44557889999999999776
No 342
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=39.97 E-value=6.7 Score=25.81 Aligned_cols=17 Identities=29% Similarity=0.450 Sum_probs=14.3
Q ss_pred eeEEeeccCCCCCceee
Q psy12524 46 ACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 46 ~~v~~yG~~~sGKt~t~ 62 (151)
..|+..|.+|+|||..+
T Consensus 4 ~~i~v~G~~~~GKssli 20 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLV 20 (172)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35788899999999876
No 343
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=39.87 E-value=7.3 Score=28.99 Aligned_cols=15 Identities=47% Similarity=0.611 Sum_probs=12.4
Q ss_pred EEeeccCCCCCceee
Q psy12524 48 IFAYGQTGSGKSYTM 62 (151)
Q Consensus 48 v~~yG~~~sGKt~t~ 62 (151)
+...|++|||||..+
T Consensus 35 ~~liG~nGsGKSTLl 49 (262)
T 1b0u_A 35 ISIIGSSGSGKSTFL 49 (262)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 456699999999876
No 344
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=39.86 E-value=6.5 Score=33.01 Aligned_cols=16 Identities=31% Similarity=0.528 Sum_probs=14.2
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
.++.+|.+|+|||..+
T Consensus 329 ~vLL~GppGtGKT~LA 344 (595)
T 3f9v_A 329 HILIIGDPGTAKSQML 344 (595)
T ss_dssp CEEEEESSCCTHHHHH
T ss_pred ceEEECCCchHHHHHH
Confidence 6899999999998765
No 345
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=39.82 E-value=6.4 Score=25.92 Aligned_cols=16 Identities=38% Similarity=0.603 Sum_probs=13.7
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
.|+..|.+|+|||..+
T Consensus 5 ~i~v~G~~~~GKssli 20 (170)
T 1g16_A 5 KILLIGDSGVGKSCLL 20 (170)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECcCCCCHHHHH
Confidence 5778899999999766
No 346
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=39.80 E-value=9.4 Score=26.83 Aligned_cols=15 Identities=27% Similarity=0.426 Sum_probs=12.4
Q ss_pred EEeeccCCCCCceee
Q psy12524 48 IFAYGQTGSGKSYTM 62 (151)
Q Consensus 48 v~~yG~~~sGKt~t~ 62 (151)
|+..|..|||||...
T Consensus 3 I~l~G~~GsGKsT~a 17 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQG 17 (216)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 567899999998765
No 347
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=39.78 E-value=10 Score=29.64 Aligned_cols=16 Identities=25% Similarity=0.407 Sum_probs=13.7
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
.++.+|++|+|||+..
T Consensus 125 viLI~GpPGsGKTtLA 140 (331)
T 2vhj_A 125 MVIVTGKGNSGKTPLV 140 (331)
T ss_dssp EEEEECSCSSSHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 4678999999999876
No 348
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=39.73 E-value=7.5 Score=29.90 Aligned_cols=18 Identities=28% Similarity=0.510 Sum_probs=14.5
Q ss_pred CeeEEeeccCCCCCceee
Q psy12524 45 NACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 45 ~~~v~~yG~~~sGKt~t~ 62 (151)
..++...|++|||||..+
T Consensus 126 Ge~vaIvGpsGsGKSTLl 143 (305)
T 2v9p_A 126 KNCLAFIGPPNTGKSMLC 143 (305)
T ss_dssp CSEEEEECSSSSSHHHHH
T ss_pred CCEEEEECCCCCcHHHHH
Confidence 345677899999999876
No 349
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=39.69 E-value=8.3 Score=28.25 Aligned_cols=16 Identities=38% Similarity=0.461 Sum_probs=13.1
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
.+...|++|||||..+
T Consensus 30 ~~~i~G~nGsGKSTLl 45 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIF 45 (243)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4466799999999877
No 350
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=39.61 E-value=8.9 Score=27.16 Aligned_cols=16 Identities=25% Similarity=0.331 Sum_probs=13.3
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
.|+..|..|||||...
T Consensus 7 ~I~l~G~~GsGKsT~~ 22 (222)
T 1zak_A 7 KVMISGAPASGKGTQC 22 (222)
T ss_dssp CEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5778899999998654
No 351
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=39.36 E-value=9.6 Score=25.94 Aligned_cols=15 Identities=40% Similarity=0.421 Sum_probs=12.2
Q ss_pred EEeeccCCCCCceee
Q psy12524 48 IFAYGQTGSGKSYTM 62 (151)
Q Consensus 48 v~~yG~~~sGKt~t~ 62 (151)
+...|..|||||...
T Consensus 3 I~l~G~~GsGKsT~~ 17 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQA 17 (195)
T ss_dssp EEEECSTTSCHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 567799999998654
No 352
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=39.33 E-value=10 Score=29.49 Aligned_cols=17 Identities=41% Similarity=0.557 Sum_probs=13.8
Q ss_pred eeEEeeccCCCCCceee
Q psy12524 46 ACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 46 ~~v~~yG~~~sGKt~t~ 62 (151)
..++..|+||||||...
T Consensus 11 ~~i~i~GptgsGKt~la 27 (316)
T 3foz_A 11 KAIFLMGPTASGKTALA 27 (316)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred cEEEEECCCccCHHHHH
Confidence 35778899999998765
No 353
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=39.33 E-value=8.5 Score=29.60 Aligned_cols=17 Identities=41% Similarity=0.536 Sum_probs=13.8
Q ss_pred eeEEeeccCCCCCceee
Q psy12524 46 ACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 46 ~~v~~yG~~~sGKt~t~ 62 (151)
...+.+|++|+|||..+
T Consensus 24 ~~~~i~G~NGsGKS~ll 40 (339)
T 3qkt_A 24 GINLIIGQNGSGKSSLL 40 (339)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 34457899999999887
No 354
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=39.32 E-value=7 Score=25.66 Aligned_cols=17 Identities=24% Similarity=0.321 Sum_probs=14.3
Q ss_pred eeEEeeccCCCCCceee
Q psy12524 46 ACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 46 ~~v~~yG~~~sGKt~t~ 62 (151)
..|+..|.+|+|||..+
T Consensus 7 ~~i~v~G~~~~GKssli 23 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLV 23 (170)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 35788899999999776
No 355
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=39.31 E-value=6.9 Score=25.81 Aligned_cols=17 Identities=18% Similarity=0.214 Sum_probs=14.5
Q ss_pred eeEEeeccCCCCCceee
Q psy12524 46 ACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 46 ~~v~~yG~~~sGKt~t~ 62 (151)
..|+..|.+|+|||..+
T Consensus 7 ~~i~v~G~~~~GKssli 23 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLV 23 (170)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred eEEEEECcCCCCHHHHH
Confidence 45788999999999876
No 356
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=39.30 E-value=7.5 Score=29.28 Aligned_cols=15 Identities=33% Similarity=0.410 Sum_probs=12.4
Q ss_pred EEeeccCCCCCceee
Q psy12524 48 IFAYGQTGSGKSYTM 62 (151)
Q Consensus 48 v~~yG~~~sGKt~t~ 62 (151)
+...|++|||||..+
T Consensus 37 ~~iiGpnGsGKSTLl 51 (275)
T 3gfo_A 37 TAILGGNGVGKSTLF 51 (275)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 355799999999877
No 357
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=39.26 E-value=7.6 Score=28.63 Aligned_cols=16 Identities=44% Similarity=0.490 Sum_probs=12.9
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
.+...|.+|||||..+
T Consensus 37 ~~~i~G~nGsGKSTLl 52 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLT 52 (247)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3456799999999876
No 358
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=39.21 E-value=7 Score=25.51 Aligned_cols=17 Identities=29% Similarity=0.345 Sum_probs=14.3
Q ss_pred eeEEeeccCCCCCceee
Q psy12524 46 ACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 46 ~~v~~yG~~~sGKt~t~ 62 (151)
..|+..|.+|+|||..+
T Consensus 4 ~~i~v~G~~~~GKSsli 20 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALT 20 (167)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 35788999999999775
No 359
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=39.15 E-value=7.6 Score=28.85 Aligned_cols=16 Identities=44% Similarity=0.453 Sum_probs=13.2
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
.+...|++|||||..+
T Consensus 48 ~~~i~G~nGsGKSTLl 63 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIA 63 (260)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4466799999999876
No 360
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=39.12 E-value=7.1 Score=26.02 Aligned_cols=17 Identities=35% Similarity=0.450 Sum_probs=14.4
Q ss_pred eeEEeeccCCCCCceee
Q psy12524 46 ACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 46 ~~v~~yG~~~sGKt~t~ 62 (151)
..|+..|.+|+|||..+
T Consensus 8 ~~i~v~G~~~~GKSsli 24 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLM 24 (177)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45788999999999766
No 361
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=39.05 E-value=12 Score=25.40 Aligned_cols=16 Identities=25% Similarity=0.528 Sum_probs=12.8
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
.+...|..|||||...
T Consensus 7 ~i~l~G~~GsGKST~~ 22 (179)
T 2pez_A 7 TVWLTGLSGAGKTTVS 22 (179)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4567799999998754
No 362
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=39.01 E-value=7.1 Score=25.60 Aligned_cols=16 Identities=31% Similarity=0.405 Sum_probs=13.6
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
.|+..|.+|+|||..+
T Consensus 5 ki~v~G~~~~GKssli 20 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALT 20 (167)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5778899999999765
No 363
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=38.88 E-value=7.7 Score=28.16 Aligned_cols=15 Identities=33% Similarity=0.585 Sum_probs=12.4
Q ss_pred EEeeccCCCCCceee
Q psy12524 48 IFAYGQTGSGKSYTM 62 (151)
Q Consensus 48 v~~yG~~~sGKt~t~ 62 (151)
+...|++|||||..+
T Consensus 37 ~~i~G~nGsGKSTLl 51 (229)
T 2pze_A 37 LAVAGSTGAGKTSLL 51 (229)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 456699999999876
No 364
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=38.84 E-value=7 Score=26.05 Aligned_cols=18 Identities=17% Similarity=0.333 Sum_probs=15.1
Q ss_pred CeeEEeeccCCCCCceee
Q psy12524 45 NACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 45 ~~~v~~yG~~~sGKt~t~ 62 (151)
...|+..|.+|+|||..+
T Consensus 8 ~~~i~v~G~~~~GKssl~ 25 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLL 25 (178)
T ss_dssp CCEEEEESCTTTTHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 446788999999999876
No 365
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=38.77 E-value=7.7 Score=29.75 Aligned_cols=18 Identities=33% Similarity=0.198 Sum_probs=14.1
Q ss_pred CeeEEeeccCCCCCceee
Q psy12524 45 NACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 45 ~~~v~~yG~~~sGKt~t~ 62 (151)
...+-..|.+|||||.++
T Consensus 90 g~ivgI~G~sGsGKSTL~ 107 (312)
T 3aez_A 90 PFIIGVAGSVAVGKSTTA 107 (312)
T ss_dssp CEEEEEECCTTSCHHHHH
T ss_pred CEEEEEECCCCchHHHHH
Confidence 345566799999999877
No 366
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=38.68 E-value=7.8 Score=28.81 Aligned_cols=16 Identities=31% Similarity=0.461 Sum_probs=12.9
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
.+...|++|||||..+
T Consensus 43 i~~l~G~NGsGKSTLl 58 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTL 58 (256)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3456699999999877
No 367
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=38.61 E-value=10 Score=27.22 Aligned_cols=13 Identities=31% Similarity=0.593 Sum_probs=11.1
Q ss_pred EEeeccCCCCCce
Q psy12524 48 IFAYGQTGSGKSY 60 (151)
Q Consensus 48 v~~yG~~~sGKt~ 60 (151)
++..|++||||+.
T Consensus 3 Iil~GpPGsGKgT 15 (206)
T 3sr0_A 3 LVFLGPPGAGKGT 15 (206)
T ss_dssp EEEECSTTSSHHH
T ss_pred EEEECCCCCCHHH
Confidence 6778999999964
No 368
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=38.57 E-value=8 Score=28.63 Aligned_cols=15 Identities=40% Similarity=0.638 Sum_probs=12.5
Q ss_pred EEeeccCCCCCceee
Q psy12524 48 IFAYGQTGSGKSYTM 62 (151)
Q Consensus 48 v~~yG~~~sGKt~t~ 62 (151)
+...|++|||||..+
T Consensus 34 ~~l~G~nGsGKSTLl 48 (253)
T 2nq2_C 34 LAVLGQNGCGKSTLL 48 (253)
T ss_dssp EEEECCSSSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 456699999999877
No 369
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=38.52 E-value=9.1 Score=27.49 Aligned_cols=19 Identities=21% Similarity=0.284 Sum_probs=15.0
Q ss_pred CCeeEEeeccCCCCCceee
Q psy12524 44 YNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 44 ~~~~v~~yG~~~sGKt~t~ 62 (151)
....|+..|..|||||...
T Consensus 15 ~~~~I~l~G~~GsGKsT~a 33 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQA 33 (233)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3446888999999998754
No 370
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=38.48 E-value=6.9 Score=26.67 Aligned_cols=18 Identities=28% Similarity=0.224 Sum_probs=15.0
Q ss_pred CeeEEeeccCCCCCceee
Q psy12524 45 NACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 45 ~~~v~~yG~~~sGKt~t~ 62 (151)
...|+..|.+|+|||..+
T Consensus 23 ~~~i~v~G~~~~GKSsli 40 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFI 40 (195)
T ss_dssp CCEEEEEEBTTSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 346888999999999776
No 371
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=38.38 E-value=11 Score=26.24 Aligned_cols=16 Identities=31% Similarity=0.326 Sum_probs=12.7
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
.+...|..|||||...
T Consensus 4 ~i~l~G~~GsGKST~~ 19 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIA 19 (206)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3566799999998765
No 372
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=38.36 E-value=8 Score=28.92 Aligned_cols=16 Identities=38% Similarity=0.625 Sum_probs=12.9
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
.+...|++|||||..+
T Consensus 52 i~~liG~NGsGKSTLl 67 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFL 67 (263)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEEcCCCCcHHHHH
Confidence 3456699999999877
No 373
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=38.34 E-value=16 Score=25.54 Aligned_cols=20 Identities=25% Similarity=0.395 Sum_probs=15.1
Q ss_pred CCCeeEEeeccCCCCCceee
Q psy12524 43 GYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 43 G~~~~v~~yG~~~sGKt~t~ 62 (151)
+....+...|..|+|||..+
T Consensus 28 ~~~~~i~i~G~~g~GKTTl~ 47 (221)
T 2wsm_A 28 SGTVAVNIMGAIGSGKTLLI 47 (221)
T ss_dssp HTCEEEEEEECTTSCHHHHH
T ss_pred cCceEEEEEcCCCCCHHHHH
Confidence 34446677799999999765
No 374
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=38.22 E-value=6.2 Score=28.08 Aligned_cols=16 Identities=31% Similarity=0.241 Sum_probs=13.6
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
..+.+|..|||||..+
T Consensus 10 i~v~~G~mgsGKTT~l 25 (191)
T 1xx6_A 10 VEVIVGPMYSGKSEEL 25 (191)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 5677899999999777
No 375
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=38.19 E-value=8.1 Score=27.04 Aligned_cols=16 Identities=31% Similarity=0.268 Sum_probs=12.8
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
.+...|.+|||||..+
T Consensus 6 ~i~i~G~sGsGKTTl~ 21 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLM 21 (169)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3556789999999876
No 376
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=38.14 E-value=7 Score=26.45 Aligned_cols=17 Identities=24% Similarity=0.305 Sum_probs=14.4
Q ss_pred eeEEeeccCCCCCceee
Q psy12524 46 ACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 46 ~~v~~yG~~~sGKt~t~ 62 (151)
..|+..|.+|+|||..+
T Consensus 24 ~~i~v~G~~~~GKSsli 40 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLL 40 (195)
T ss_dssp CEEEEEEBTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35788899999999776
No 377
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=38.11 E-value=13 Score=33.60 Aligned_cols=24 Identities=17% Similarity=0.293 Sum_probs=17.4
Q ss_pred HHHhhcCCCeeEEeeccCCCCCceee
Q psy12524 37 LDNAFQGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 37 v~~~~~G~~~~v~~yG~~~sGKt~t~ 62 (151)
+..+..|.+ +++.+.||||||...
T Consensus 193 I~~i~~g~d--vLV~ApTGSGKTlva 216 (1108)
T 3l9o_A 193 ISCIDRGES--VLVSAHTSAGKTVVA 216 (1108)
T ss_dssp HHHHTTTCC--EEEECCSSSHHHHHH
T ss_pred HHHHHcCCC--EEEECCCCCChHHHH
Confidence 444566655 578899999999653
No 378
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=38.07 E-value=10 Score=28.82 Aligned_cols=16 Identities=38% Similarity=0.488 Sum_probs=13.6
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
....+|.+|||||-.+
T Consensus 26 ~~~i~G~NGsGKS~ll 41 (322)
T 1e69_A 26 VTAIVGPNGSGKSNII 41 (322)
T ss_dssp EEEEECCTTTCSTHHH
T ss_pred cEEEECCCCCcHHHHH
Confidence 4567899999999887
No 379
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=38.06 E-value=7.7 Score=26.86 Aligned_cols=18 Identities=22% Similarity=0.325 Sum_probs=14.6
Q ss_pred CeeEEeeccCCCCCceee
Q psy12524 45 NACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 45 ~~~v~~yG~~~sGKt~t~ 62 (151)
...+...|.+|+|||..+
T Consensus 26 ~~~v~lvG~~g~GKSTLl 43 (210)
T 1pui_A 26 GIEVAFAGRSNAGKSSAL 43 (210)
T ss_dssp SEEEEEEECTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 345778899999999876
No 380
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=38.05 E-value=8.1 Score=28.59 Aligned_cols=16 Identities=31% Similarity=0.532 Sum_probs=13.0
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
.+...|.+|||||..+
T Consensus 28 ~~~liG~NGsGKSTLl 43 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLL 43 (249)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 3456799999999876
No 381
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=37.95 E-value=8.1 Score=28.88 Aligned_cols=15 Identities=33% Similarity=0.567 Sum_probs=12.4
Q ss_pred EEeeccCCCCCceee
Q psy12524 48 IFAYGQTGSGKSYTM 62 (151)
Q Consensus 48 v~~yG~~~sGKt~t~ 62 (151)
+-..|++|||||..+
T Consensus 40 ~~liG~nGsGKSTLl 54 (266)
T 4g1u_C 40 VAIIGPNGAGKSTLL 54 (266)
T ss_dssp EEEECCTTSCHHHHH
T ss_pred EEEECCCCCcHHHHH
Confidence 355799999999877
No 382
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=37.93 E-value=8.2 Score=28.43 Aligned_cols=16 Identities=31% Similarity=0.293 Sum_probs=12.9
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
.+...|++|||||..+
T Consensus 31 ~~~l~G~nGsGKSTLl 46 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLG 46 (250)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3456799999999877
No 383
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=37.91 E-value=7.1 Score=26.93 Aligned_cols=17 Identities=29% Similarity=0.450 Sum_probs=14.3
Q ss_pred eeEEeeccCCCCCceee
Q psy12524 46 ACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 46 ~~v~~yG~~~sGKt~t~ 62 (151)
..+...|.+|+|||..+
T Consensus 30 ~kv~lvG~~g~GKSTLl 46 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLL 46 (191)
T ss_dssp EEEEEEECTTSSHHHHH
T ss_pred eEEEEECcCCCCHHHHH
Confidence 35678899999999877
No 384
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=37.83 E-value=12 Score=30.12 Aligned_cols=28 Identities=18% Similarity=0.328 Sum_probs=20.3
Q ss_pred HHHHHhhc-CCCeeEEeeccCCCCCceee
Q psy12524 35 DILDNAFQ-GYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 35 ~lv~~~~~-G~~~~v~~yG~~~sGKt~t~ 62 (151)
+.++.++. +....+...|.+|+|||..+
T Consensus 146 ~vld~vl~i~~Gq~~~IvG~sGsGKSTLl 174 (438)
T 2dpy_A 146 RAINALLTVGRGQRMGLFAGSGVGKSVLL 174 (438)
T ss_dssp HHHHHHSCCBTTCEEEEEECTTSSHHHHH
T ss_pred eEEeeeEEecCCCEEEEECCCCCCHHHHH
Confidence 35666654 55556677899999999876
No 385
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=37.82 E-value=21 Score=26.95 Aligned_cols=18 Identities=33% Similarity=0.228 Sum_probs=14.0
Q ss_pred CeeEEeeccCCCCCceee
Q psy12524 45 NACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 45 ~~~v~~yG~~~sGKt~t~ 62 (151)
...+-..|.+|||||.++
T Consensus 80 g~iigI~G~~GsGKSTl~ 97 (308)
T 1sq5_A 80 PYIISIAGSVAVGKSTTA 97 (308)
T ss_dssp CEEEEEEECTTSSHHHHH
T ss_pred CEEEEEECCCCCCHHHHH
Confidence 345666799999999876
No 386
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=37.80 E-value=7.7 Score=26.35 Aligned_cols=17 Identities=29% Similarity=0.309 Sum_probs=14.4
Q ss_pred eeEEeeccCCCCCceee
Q psy12524 46 ACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 46 ~~v~~yG~~~sGKt~t~ 62 (151)
..|+..|..|+|||..+
T Consensus 22 ~ki~vvG~~~~GKSsli 38 (190)
T 3con_A 22 YKLVVVGAGGVGKSALT 38 (190)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECcCCCCHHHHH
Confidence 36788899999999876
No 387
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=37.77 E-value=11 Score=29.36 Aligned_cols=16 Identities=31% Similarity=0.337 Sum_probs=13.2
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
.++..|+||||||...
T Consensus 5 ~i~i~GptgsGKt~la 20 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTS 20 (322)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCcCCHHHHH
Confidence 4677899999998765
No 388
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=37.77 E-value=8.2 Score=28.78 Aligned_cols=16 Identities=38% Similarity=0.368 Sum_probs=12.9
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
.+...|++|||||..+
T Consensus 48 ~~~l~G~NGsGKSTLl 63 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLS 63 (267)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3456799999999876
No 389
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=37.72 E-value=10 Score=27.53 Aligned_cols=15 Identities=47% Similarity=0.753 Sum_probs=12.4
Q ss_pred eEEeeccCCCCCcee
Q psy12524 47 CIFAYGQTGSGKSYT 61 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t 61 (151)
.|+..|+.||||+.-
T Consensus 31 iI~llGpPGsGKgTq 45 (217)
T 3umf_A 31 VIFVLGGPGSGKGTQ 45 (217)
T ss_dssp EEEEECCTTCCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 578899999999653
No 390
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=37.50 E-value=11 Score=27.88 Aligned_cols=16 Identities=44% Similarity=0.497 Sum_probs=13.3
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
.++..|.+|||||...
T Consensus 4 ~I~l~G~~GsGKST~a 19 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWA 19 (301)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5788899999998754
No 391
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=37.45 E-value=12 Score=25.33 Aligned_cols=19 Identities=21% Similarity=0.340 Sum_probs=15.6
Q ss_pred CCeeEEeeccCCCCCceee
Q psy12524 44 YNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 44 ~~~~v~~yG~~~sGKt~t~ 62 (151)
....|+..|.+|+|||..+
T Consensus 15 ~~~ki~ivG~~~vGKSsL~ 33 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLL 33 (181)
T ss_dssp SCEEEEEEESTTSSHHHHH
T ss_pred CceEEEEECCCCCCHHHHH
Confidence 4567889999999999765
No 392
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=37.27 E-value=11 Score=25.79 Aligned_cols=15 Identities=47% Similarity=0.510 Sum_probs=12.2
Q ss_pred EEeeccCCCCCceee
Q psy12524 48 IFAYGQTGSGKSYTM 62 (151)
Q Consensus 48 v~~yG~~~sGKt~t~ 62 (151)
|...|..|||||...
T Consensus 3 I~l~G~~GsGKsT~~ 17 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQI 17 (197)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 566799999998665
No 393
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=37.18 E-value=7.5 Score=25.83 Aligned_cols=17 Identities=18% Similarity=0.272 Sum_probs=14.3
Q ss_pred eeEEeeccCCCCCceee
Q psy12524 46 ACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 46 ~~v~~yG~~~sGKt~t~ 62 (151)
..|+..|..|+|||..+
T Consensus 15 ~~i~v~G~~~~GKssli 31 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLI 31 (179)
T ss_dssp EEEEEEESTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45788899999999876
No 394
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=37.10 E-value=8 Score=25.52 Aligned_cols=18 Identities=28% Similarity=0.510 Sum_probs=14.9
Q ss_pred CeeEEeeccCCCCCceee
Q psy12524 45 NACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 45 ~~~v~~yG~~~sGKt~t~ 62 (151)
...|+..|.+|+|||..+
T Consensus 7 ~~~i~v~G~~~~GKssl~ 24 (171)
T 1upt_A 7 EMRILILGLDGAGKTTIL 24 (171)
T ss_dssp CEEEEEECSTTSSHHHHH
T ss_pred ccEEEEECCCCCCHHHHH
Confidence 346788999999999766
No 395
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=37.07 E-value=18 Score=31.90 Aligned_cols=25 Identities=32% Similarity=0.541 Sum_probs=18.6
Q ss_pred HHHHhhcCCCeeEEeeccCCCCCceee
Q psy12524 36 ILDNAFQGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 36 lv~~~~~G~~~~v~~yG~~~sGKt~t~ 62 (151)
.+..++.|.+ ++..++||||||.+.
T Consensus 256 ai~~il~g~~--~ll~a~TGsGKTl~~ 280 (936)
T 4a2w_A 256 LAQPAINGKN--ALICAPTGSGKTFVS 280 (936)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHHcCCC--EEEEeCCCchHHHHH
Confidence 4455677876 467789999999774
No 396
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=37.04 E-value=12 Score=26.35 Aligned_cols=16 Identities=31% Similarity=0.416 Sum_probs=13.3
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
.+..-|.+|||||...
T Consensus 7 ~i~i~G~~GsGKSTl~ 22 (227)
T 1cke_A 7 VITIDGPSGAGKGTLC 22 (227)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4667899999999766
No 397
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=37.00 E-value=8 Score=25.67 Aligned_cols=17 Identities=29% Similarity=0.378 Sum_probs=14.6
Q ss_pred eeEEeeccCCCCCceee
Q psy12524 46 ACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 46 ~~v~~yG~~~sGKt~t~ 62 (151)
..|+..|..++|||..+
T Consensus 16 ~~i~v~G~~~~GKSsli 32 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLL 32 (179)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46888999999999876
No 398
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=36.93 E-value=8.2 Score=28.74 Aligned_cols=26 Identities=23% Similarity=0.350 Sum_probs=18.0
Q ss_pred HHHhhcCC--CeeEEeeccCCCCCceee
Q psy12524 37 LDNAFQGY--NACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 37 v~~~~~G~--~~~v~~yG~~~sGKt~t~ 62 (151)
++.+.-|. ...+...|.+|+|||..+
T Consensus 25 Ld~i~~~l~~G~~~~i~G~~G~GKTTl~ 52 (296)
T 1cr0_A 25 INDKTLGARGGEVIMVTSGSGMGKSTFV 52 (296)
T ss_dssp HHHHHCSBCTTCEEEEEESTTSSHHHHH
T ss_pred HHHHhcCCCCCeEEEEEeCCCCCHHHHH
Confidence 44444333 335677899999999877
No 399
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=36.92 E-value=8.7 Score=28.76 Aligned_cols=16 Identities=38% Similarity=0.416 Sum_probs=13.0
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
.+...|.+|||||..+
T Consensus 47 ~~~i~G~nGsGKSTLl 62 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVA 62 (271)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3456799999999876
No 400
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=36.91 E-value=24 Score=27.17 Aligned_cols=29 Identities=24% Similarity=0.319 Sum_probs=20.4
Q ss_pred HHHHHHhh--cCCCeeEEeeccCCCCCceee
Q psy12524 34 RDILDNAF--QGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 34 ~~lv~~~~--~G~~~~v~~yG~~~sGKt~t~ 62 (151)
..++..+. .+....|...|..|+|||.++
T Consensus 66 ~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~ 96 (355)
T 3p32_A 66 QQLLLRLLPDSGNAHRVGITGVPGVGKSTAI 96 (355)
T ss_dssp HHHHHHHGGGCCCSEEEEEECCTTSSHHHHH
T ss_pred HHHHHHhHhhcCCceEEEEECCCCCCHHHHH
Confidence 34455544 355556777899999999876
No 401
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=36.91 E-value=8 Score=25.74 Aligned_cols=17 Identities=29% Similarity=0.479 Sum_probs=14.3
Q ss_pred eeEEeeccCCCCCceee
Q psy12524 46 ACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 46 ~~v~~yG~~~sGKt~t~ 62 (151)
-.|+..|.+|+|||..+
T Consensus 10 ~~i~v~G~~~~GKssl~ 26 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLL 26 (181)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35788999999999766
No 402
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=36.84 E-value=8.7 Score=28.94 Aligned_cols=15 Identities=33% Similarity=0.665 Sum_probs=12.5
Q ss_pred EEeeccCCCCCceee
Q psy12524 48 IFAYGQTGSGKSYTM 62 (151)
Q Consensus 48 v~~yG~~~sGKt~t~ 62 (151)
+...|++|||||..+
T Consensus 50 ~~liG~NGsGKSTLl 64 (279)
T 2ihy_A 50 WILYGLNGAGKTTLL 64 (279)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCcHHHHH
Confidence 456799999999877
No 403
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=36.82 E-value=8.7 Score=28.70 Aligned_cols=16 Identities=31% Similarity=0.565 Sum_probs=13.1
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
.+...|++|||||..+
T Consensus 32 ~~~i~G~NGsGKSTLl 47 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLL 47 (263)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4556799999999877
No 404
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=36.71 E-value=8.2 Score=25.32 Aligned_cols=16 Identities=25% Similarity=0.422 Sum_probs=13.3
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
.|+..|.+|+|||..+
T Consensus 2 ki~~~G~~~~GKssl~ 17 (164)
T 1r8s_A 2 RILMVGLDAAGKTTIL 17 (164)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3678899999999876
No 405
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=36.62 E-value=8.8 Score=26.80 Aligned_cols=16 Identities=19% Similarity=0.268 Sum_probs=12.9
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
.+...|.+|||||..+
T Consensus 8 ~i~i~G~sGsGKTTl~ 23 (174)
T 1np6_A 8 LLAFAAWSGTGKTTLL 23 (174)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEEeCCCCCHHHHH
Confidence 3556799999999876
No 406
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=36.60 E-value=7.7 Score=25.81 Aligned_cols=17 Identities=29% Similarity=0.321 Sum_probs=14.4
Q ss_pred eeEEeeccCCCCCceee
Q psy12524 46 ACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 46 ~~v~~yG~~~sGKt~t~ 62 (151)
..|+..|.+|+|||..+
T Consensus 10 ~~i~v~G~~~~GKssli 26 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALT 26 (181)
T ss_dssp EEEEEEECTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46788899999999865
No 407
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=36.59 E-value=7.8 Score=25.50 Aligned_cols=16 Identities=31% Similarity=0.439 Sum_probs=13.5
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
-|+..|.+|+|||..+
T Consensus 4 ki~~vG~~~~GKSsli 19 (166)
T 3q72_A 4 KVLLLGAPGVGKSALA 19 (166)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678899999999776
No 408
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=36.47 E-value=16 Score=32.77 Aligned_cols=23 Identities=17% Similarity=0.265 Sum_probs=16.7
Q ss_pred HHhhcCCCeeEEeeccCCCCCceee
Q psy12524 38 DNAFQGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 38 ~~~~~G~~~~v~~yG~~~sGKt~t~ 62 (151)
..+..|.+ ++..++||||||...
T Consensus 96 ~~l~~g~~--vLV~apTGSGKTlva 118 (1010)
T 2xgj_A 96 SCIDRGES--VLVSAHTSAGKTVVA 118 (1010)
T ss_dssp HHHHHTCE--EEEECCTTSCHHHHH
T ss_pred HHHHcCCC--EEEECCCCCChHHHH
Confidence 34455654 678889999999753
No 409
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=36.46 E-value=14 Score=25.96 Aligned_cols=18 Identities=33% Similarity=0.381 Sum_probs=13.9
Q ss_pred CeeEEeeccCCCCCceee
Q psy12524 45 NACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 45 ~~~v~~yG~~~sGKt~t~ 62 (151)
...++..|..|||||..+
T Consensus 25 ~~~i~~~G~~GsGKsT~~ 42 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLA 42 (211)
T ss_dssp CEEEEEECSTTSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 346677899999998654
No 410
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=36.42 E-value=12 Score=30.03 Aligned_cols=17 Identities=41% Similarity=0.552 Sum_probs=14.5
Q ss_pred eeEEeeccCCCCCceee
Q psy12524 46 ACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 46 ~~v~~yG~~~sGKt~t~ 62 (151)
..+...|.+|+|||.++
T Consensus 100 ~vI~ivG~~GvGKTTla 116 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTA 116 (432)
T ss_dssp CCEEEECCSSSSTTHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 36777899999999988
No 411
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=36.36 E-value=11 Score=26.58 Aligned_cols=15 Identities=27% Similarity=0.350 Sum_probs=12.3
Q ss_pred EEeeccCCCCCceee
Q psy12524 48 IFAYGQTGSGKSYTM 62 (151)
Q Consensus 48 v~~yG~~~sGKt~t~ 62 (151)
++..|..|||||...
T Consensus 3 I~l~G~~GsGKsT~a 17 (214)
T 1e4v_A 3 IILLGAPVAGKGTQA 17 (214)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 677899999998654
No 412
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=36.20 E-value=19 Score=30.46 Aligned_cols=81 Identities=19% Similarity=0.334 Sum_probs=46.0
Q ss_pred CCCCCCCHHHHHHHHhHHHHHHhhcCCCeeEEeeccCCCCCceeeccC--C-CCCCcH----HHHHHHHHHHHHhhcCCC
Q psy12524 18 NLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYTMMGS--Q-DNKGII----PRLCDSLFDLIAKQESSE 90 (151)
Q Consensus 18 ~~~~~~~q~~vy~~~~~~lv~~~~~G~~~~v~~yG~~~sGKt~t~~G~--~-~~~Gli----~~~~~~lf~~~~~~~~~~ 90 (151)
.+.+.-.|..-++. +++.+-.|... ....|.+|||||++|..- . ..+-|+ ...+..+++.+...-..+
T Consensus 10 ~~~p~~~Q~~~i~~----l~~~~~~~~~~-~~l~g~~gs~k~~~~a~~~~~~~~~~lvv~~~~~~A~~l~~el~~~~~~~ 84 (661)
T 2d7d_A 10 KYQPQGDQPKAIEK----LVKGIQEGKKH-QTLLGATGTGKTFTVSNLIKEVNKPTLVIAHNKTLAGQLYSEFKEFFPNN 84 (661)
T ss_dssp SCCCCTTHHHHHHH----HHHHHHTTCSE-EEEEECTTSCHHHHHHHHHHHHCCCEEEECSSHHHHHHHHHHHHHHCTTS
T ss_pred CCCCCCCCHHHHHH----HHHHHhcCCCc-EEEECcCCcHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHHHHHcCCC
Confidence 34777888777654 45565566533 345699999999999531 0 112111 123455666665543222
Q ss_pred ceEEEEEEEEEEEC
Q psy12524 91 LTYKVEVSYMEIYN 104 (151)
Q Consensus 91 ~~~~v~~S~~eiy~ 104 (151)
.+....||+..|.
T Consensus 85 -~v~~fps~yd~~~ 97 (661)
T 2d7d_A 85 -AVEYFVSYYDYYQ 97 (661)
T ss_dssp -EEEEECCCEEEEE
T ss_pred -cEEEccccccccC
Confidence 4555567666653
No 413
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=36.15 E-value=9 Score=30.10 Aligned_cols=16 Identities=31% Similarity=0.503 Sum_probs=13.0
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
.+...|++|||||.++
T Consensus 43 ~~~llGpnGsGKSTLL 58 (355)
T 1z47_A 43 MVGLLGPSGSGKTTIL 58 (355)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 3456799999999887
No 414
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=36.14 E-value=8.6 Score=30.32 Aligned_cols=16 Identities=31% Similarity=0.681 Sum_probs=13.0
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
.+...|++|||||.++
T Consensus 32 ~~~llGpsGsGKSTLL 47 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLL 47 (359)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCchHHHHH
Confidence 3456799999999877
No 415
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=35.98 E-value=8.4 Score=25.73 Aligned_cols=18 Identities=39% Similarity=0.569 Sum_probs=15.0
Q ss_pred CeeEEeeccCCCCCceee
Q psy12524 45 NACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 45 ~~~v~~yG~~~sGKt~t~ 62 (151)
...|+..|.+++|||..+
T Consensus 12 ~~ki~v~G~~~~GKSsli 29 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLV 29 (181)
T ss_dssp EEEEEEECCTTSCHHHHH
T ss_pred ceEEEEECcCCCCHHHHH
Confidence 356888999999999765
No 416
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=35.90 E-value=9.2 Score=30.10 Aligned_cols=16 Identities=31% Similarity=0.586 Sum_probs=12.9
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
.+...|++|||||.++
T Consensus 31 ~~~llGpnGsGKSTLL 46 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTL 46 (359)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEEcCCCchHHHHH
Confidence 3456799999999887
No 417
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=35.82 E-value=12 Score=29.19 Aligned_cols=16 Identities=38% Similarity=0.380 Sum_probs=13.4
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
.|...|++|||||...
T Consensus 9 lI~I~GptgSGKTtla 24 (340)
T 3d3q_A 9 LIVIVGPTASGKTELS 24 (340)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred eEEEECCCcCcHHHHH
Confidence 5778899999999754
No 418
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=35.81 E-value=10 Score=25.94 Aligned_cols=18 Identities=22% Similarity=0.290 Sum_probs=5.1
Q ss_pred CeeEEeeccCCCCCceee
Q psy12524 45 NACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 45 ~~~v~~yG~~~sGKt~t~ 62 (151)
...|+..|.+|+|||..+
T Consensus 20 ~~~i~v~G~~~~GKssli 37 (208)
T 2yc2_C 20 RCKVAVVGEATVGKSALI 37 (208)
T ss_dssp EEEEEEC-----------
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 456889999999999877
No 419
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=35.77 E-value=8.6 Score=25.97 Aligned_cols=16 Identities=31% Similarity=0.308 Sum_probs=13.8
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
.+...|.+|+|||..+
T Consensus 9 ~i~lvG~~gvGKStL~ 24 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIF 24 (188)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5788899999999776
No 420
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=35.70 E-value=11 Score=31.80 Aligned_cols=18 Identities=28% Similarity=0.392 Sum_probs=14.5
Q ss_pred CeeEEeeccCCCCCceee
Q psy12524 45 NACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 45 ~~~v~~yG~~~sGKt~t~ 62 (151)
+..++..|+||||||...
T Consensus 46 ~~~~lv~apTGsGKT~~~ 63 (715)
T 2va8_A 46 GNRLLLTSPTGSGKTLIA 63 (715)
T ss_dssp TCCEEEECCTTSCHHHHH
T ss_pred CCcEEEEcCCCCcHHHHH
Confidence 345688899999999875
No 421
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=35.66 E-value=11 Score=26.11 Aligned_cols=17 Identities=35% Similarity=0.253 Sum_probs=13.8
Q ss_pred eeEEeeccCCCCCceee
Q psy12524 46 ACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 46 ~~v~~yG~~~sGKt~t~ 62 (151)
..|+..|..|||||...
T Consensus 11 ~~I~l~G~~GsGKST~~ 27 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQS 27 (212)
T ss_dssp CEEEEEESTTSSHHHHH
T ss_pred CEEEEEcCCCCCHHHHH
Confidence 35778899999998764
No 422
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=35.60 E-value=8.7 Score=25.44 Aligned_cols=17 Identities=24% Similarity=0.358 Sum_probs=14.4
Q ss_pred eeEEeeccCCCCCceee
Q psy12524 46 ACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 46 ~~v~~yG~~~sGKt~t~ 62 (151)
..|+..|.+|+|||..+
T Consensus 5 ~ki~i~G~~~vGKSsl~ 21 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLA 21 (175)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred EEEEEECCCCccHHHHH
Confidence 45788999999999866
No 423
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=35.40 E-value=18 Score=32.79 Aligned_cols=25 Identities=24% Similarity=0.193 Sum_probs=18.5
Q ss_pred HHHHhhcCCCeeEEeeccCCCCCceee
Q psy12524 36 ILDNAFQGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 36 lv~~~~~G~~~~v~~yG~~~sGKt~t~ 62 (151)
.+..++.|.+ +++.++||||||...
T Consensus 86 ai~~il~g~d--vlv~ApTGSGKTl~~ 110 (1104)
T 4ddu_A 86 WAKRIVQGKS--FTMVAPTGVGKTTFG 110 (1104)
T ss_dssp HHHHHTTTCC--EEECCSTTCCHHHHH
T ss_pred HHHHHHcCCC--EEEEeCCCCcHHHHH
Confidence 4455677765 578889999999843
No 424
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=35.36 E-value=8.8 Score=25.29 Aligned_cols=16 Identities=31% Similarity=0.482 Sum_probs=13.5
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
-|+..|.+|+|||..+
T Consensus 4 ki~ivG~~~~GKSsli 19 (169)
T 3q85_A 4 KVMLVGESGVGKSTLA 19 (169)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678899999999776
No 425
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=35.32 E-value=12 Score=30.46 Aligned_cols=17 Identities=35% Similarity=0.475 Sum_probs=14.7
Q ss_pred eeEEeeccCCCCCceee
Q psy12524 46 ACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 46 ~~v~~yG~~~sGKt~t~ 62 (151)
..++.+|++|+|||...
T Consensus 51 ~~iLl~GppGtGKT~la 67 (444)
T 1g41_A 51 KNILMIGPTGVGKTEIA 67 (444)
T ss_dssp CCEEEECCTTSSHHHHH
T ss_pred ceEEEEcCCCCCHHHHH
Confidence 46899999999998865
No 426
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=35.25 E-value=9.5 Score=30.34 Aligned_cols=16 Identities=31% Similarity=0.526 Sum_probs=13.0
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
.+...|++|||||.++
T Consensus 31 ~~~llGpsGsGKSTLL 46 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLL 46 (381)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEEcCCCchHHHHH
Confidence 3456799999999877
No 427
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=35.25 E-value=9.5 Score=30.04 Aligned_cols=16 Identities=38% Similarity=0.553 Sum_probs=13.0
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
.+...|++|||||.++
T Consensus 31 ~~~llGpnGsGKSTLL 46 (362)
T 2it1_A 31 FMALLGPSGSGKSTLL 46 (362)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCchHHHHH
Confidence 3456799999999887
No 428
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=35.25 E-value=23 Score=24.74 Aligned_cols=20 Identities=25% Similarity=0.237 Sum_probs=14.9
Q ss_pred CCCeeEEeeccCCCCCceee
Q psy12524 43 GYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 43 G~~~~v~~yG~~~sGKt~t~ 62 (151)
.....+...|..|+|||..+
T Consensus 36 ~~~~~i~ivG~~gvGKTtl~ 55 (226)
T 2hf9_A 36 HGVVAFDFMGAIGSGKTLLI 55 (226)
T ss_dssp TTCEEEEEEESTTSSHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHH
Confidence 34455666699999999766
No 429
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=35.24 E-value=9.5 Score=30.11 Aligned_cols=16 Identities=31% Similarity=0.642 Sum_probs=13.0
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
.+...|++|||||.++
T Consensus 31 ~~~llGpnGsGKSTLL 46 (372)
T 1g29_1 31 FMILLGPSGCGKTTTL 46 (372)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCcHHHHHH
Confidence 3456799999999887
No 430
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=35.22 E-value=8.4 Score=25.92 Aligned_cols=17 Identities=29% Similarity=0.516 Sum_probs=14.5
Q ss_pred eeEEeeccCCCCCceee
Q psy12524 46 ACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 46 ~~v~~yG~~~sGKt~t~ 62 (151)
..|+..|..|+|||..+
T Consensus 11 ~ki~v~G~~~~GKSsli 27 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLL 27 (186)
T ss_dssp EEEEEEESTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46788899999999866
No 431
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=35.10 E-value=9 Score=25.63 Aligned_cols=17 Identities=29% Similarity=0.352 Sum_probs=14.4
Q ss_pred eeEEeeccCCCCCceee
Q psy12524 46 ACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 46 ~~v~~yG~~~sGKt~t~ 62 (151)
..|+..|..|+|||..+
T Consensus 19 ~ki~v~G~~~~GKSsli 35 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALT 35 (187)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46788999999999765
No 432
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=35.05 E-value=13 Score=31.88 Aligned_cols=40 Identities=28% Similarity=0.486 Sum_probs=23.0
Q ss_pred eEEeeccCCCCCceeeccC--CCCCCcH----HHHHHHHHHHHHhh
Q psy12524 47 CIFAYGQTGSGKSYTMMGS--QDNKGII----PRLCDSLFDLIAKQ 86 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~~G~--~~~~Gli----~~~~~~lf~~~~~~ 86 (151)
.++..|+||||||..+.-. ....|++ --++.++++.+...
T Consensus 157 ~vlv~apTGSGKT~~al~~l~~~~~gl~l~PtR~LA~Qi~~~l~~~ 202 (677)
T 3rc3_A 157 IIFHSGPTNSGKTYHAIQKYFSAKSGVYCGPLKLLAHEIFEKSNAA 202 (677)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHSSSEEEEESSHHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCeEEEeCHHHHHHHHHHHHHhc
Confidence 5688999999999843210 0122331 22456667666543
No 433
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=35.02 E-value=60 Score=24.42 Aligned_cols=16 Identities=38% Similarity=0.578 Sum_probs=13.1
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
.+...|.+|+|||.++
T Consensus 100 vi~i~G~~G~GKTT~~ 115 (297)
T 1j8m_F 100 VIMLVGVQGTGKTTTA 115 (297)
T ss_dssp EEEEECSSCSSTTHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4555699999999877
No 434
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=35.02 E-value=9 Score=25.89 Aligned_cols=18 Identities=22% Similarity=0.270 Sum_probs=15.1
Q ss_pred CeeEEeeccCCCCCceee
Q psy12524 45 NACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 45 ~~~v~~yG~~~sGKt~t~ 62 (151)
...|+..|..++|||..+
T Consensus 7 ~~ki~v~G~~~~GKSsli 24 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIV 24 (208)
T ss_dssp SEEEEEECCTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 456888999999999876
No 435
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=34.95 E-value=13 Score=25.94 Aligned_cols=16 Identities=38% Similarity=0.264 Sum_probs=12.6
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
.+...|.+|||||..+
T Consensus 23 ~i~i~G~~GsGKSTl~ 38 (207)
T 2qt1_A 23 IIGISGVTNSGKTTLA 38 (207)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4667799999998654
No 436
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=34.92 E-value=9.1 Score=25.72 Aligned_cols=18 Identities=28% Similarity=0.322 Sum_probs=14.8
Q ss_pred CeeEEeeccCCCCCceee
Q psy12524 45 NACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 45 ~~~v~~yG~~~sGKt~t~ 62 (151)
...|+..|.+|+|||..+
T Consensus 18 ~~ki~v~G~~~~GKSsl~ 35 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALT 35 (183)
T ss_dssp EEEEEEECSTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 346788999999999765
No 437
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=34.86 E-value=12 Score=26.54 Aligned_cols=16 Identities=31% Similarity=0.476 Sum_probs=13.1
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
.|+..|..|||||...
T Consensus 7 ~I~l~G~~GsGKsT~a 22 (217)
T 3be4_A 7 NLILIGAPGSGKGTQC 22 (217)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5777899999998654
No 438
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=34.80 E-value=12 Score=26.63 Aligned_cols=15 Identities=40% Similarity=0.685 Sum_probs=12.3
Q ss_pred EEeeccCCCCCceee
Q psy12524 48 IFAYGQTGSGKSYTM 62 (151)
Q Consensus 48 v~~yG~~~sGKt~t~ 62 (151)
++..|..|||||...
T Consensus 3 I~l~G~~GsGKsT~a 17 (223)
T 2xb4_A 3 ILIFGPNGSGKGTQG 17 (223)
T ss_dssp EEEECCTTSCHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 677899999998654
No 439
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=34.80 E-value=9.1 Score=25.73 Aligned_cols=17 Identities=29% Similarity=0.561 Sum_probs=14.5
Q ss_pred eeEEeeccCCCCCceee
Q psy12524 46 ACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 46 ~~v~~yG~~~sGKt~t~ 62 (151)
..|+..|..|+|||..+
T Consensus 12 ~ki~v~G~~~~GKSsli 28 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVL 28 (195)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 46788999999999766
No 440
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=34.80 E-value=9.1 Score=25.70 Aligned_cols=17 Identities=29% Similarity=0.331 Sum_probs=14.1
Q ss_pred eeEEeeccCCCCCceee
Q psy12524 46 ACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 46 ~~v~~yG~~~sGKt~t~ 62 (151)
..|+..|.+|+|||..+
T Consensus 5 ~ki~v~G~~~~GKSsli 21 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALT 21 (189)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 35788999999999765
No 441
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=34.80 E-value=13 Score=25.68 Aligned_cols=16 Identities=31% Similarity=0.256 Sum_probs=13.0
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
.|...|..|||||...
T Consensus 6 ~I~l~G~~GsGKsT~~ 21 (204)
T 2v54_A 6 LIVFEGLDKSGKTTQC 21 (204)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 4677899999998654
No 442
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=34.71 E-value=9.2 Score=26.20 Aligned_cols=17 Identities=29% Similarity=0.352 Sum_probs=14.5
Q ss_pred eeEEeeccCCCCCceee
Q psy12524 46 ACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 46 ~~v~~yG~~~sGKt~t~ 62 (151)
..|+..|.+|+|||..+
T Consensus 15 ~ki~v~G~~~~GKSsli 31 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALT 31 (206)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 46788999999999876
No 443
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=34.53 E-value=11 Score=29.55 Aligned_cols=16 Identities=31% Similarity=0.607 Sum_probs=14.0
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
....+|++|+|||..+
T Consensus 28 ~~~i~G~nG~GKttll 43 (359)
T 2o5v_A 28 VTGIYGENGAGKTNLL 43 (359)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCChhHHH
Confidence 5678899999999888
No 444
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=34.38 E-value=8.7 Score=25.88 Aligned_cols=16 Identities=31% Similarity=0.424 Sum_probs=13.5
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
.|+..|.+|+|||..+
T Consensus 3 ki~v~G~~~~GKSsli 18 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLI 18 (190)
T ss_dssp EEEEEEBTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678899999999876
No 445
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=34.37 E-value=21 Score=26.18 Aligned_cols=29 Identities=34% Similarity=0.464 Sum_probs=19.8
Q ss_pred HHHHHHhhc-CC-CeeEEeeccCCCCCceee
Q psy12524 34 RDILDNAFQ-GY-NACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 34 ~~lv~~~~~-G~-~~~v~~yG~~~sGKt~t~ 62 (151)
..++..... +. ...|+..|.+|+|||..+
T Consensus 26 ~~~~~~~~~~~~~~~~I~vvG~~g~GKSSLi 56 (270)
T 1h65_A 26 LELLGNLKQEDVNSLTILVMGKGGVGKSSTV 56 (270)
T ss_dssp HHHHHHHHHTTCCEEEEEEEESTTSSHHHHH
T ss_pred HHHHHHHhhcCCCCeEEEEECCCCCCHHHHH
Confidence 344444332 33 567889999999999766
No 446
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=34.30 E-value=9.4 Score=25.55 Aligned_cols=17 Identities=18% Similarity=0.249 Sum_probs=14.2
Q ss_pred eeEEeeccCCCCCceee
Q psy12524 46 ACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 46 ~~v~~yG~~~sGKt~t~ 62 (151)
..|+..|.+|+|||..+
T Consensus 6 ~~i~~~G~~~~GKssl~ 22 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLL 22 (186)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 35788899999999776
No 447
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=34.23 E-value=9.4 Score=25.99 Aligned_cols=17 Identities=24% Similarity=0.452 Sum_probs=14.5
Q ss_pred eeEEeeccCCCCCceee
Q psy12524 46 ACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 46 ~~v~~yG~~~sGKt~t~ 62 (151)
..|+..|.+|+|||..+
T Consensus 26 ~ki~v~G~~~~GKSsLi 42 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLL 42 (193)
T ss_dssp EEEEEESSTTSSHHHHH
T ss_pred eEEEEECcCCCCHHHHH
Confidence 46888999999999766
No 448
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=34.15 E-value=9.5 Score=25.43 Aligned_cols=16 Identities=31% Similarity=0.308 Sum_probs=13.6
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
.+...|.+|+|||..+
T Consensus 5 ~v~lvG~~gvGKStL~ 20 (165)
T 2wji_A 5 EIALIGNPNVGKSTIF 20 (165)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678899999999776
No 449
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=33.90 E-value=13 Score=26.99 Aligned_cols=19 Identities=26% Similarity=0.310 Sum_probs=15.1
Q ss_pred CCeeEEeeccCCCCCceee
Q psy12524 44 YNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 44 ~~~~v~~yG~~~sGKt~t~ 62 (151)
....|+..|..|||||...
T Consensus 28 ~~~~I~l~G~~GsGKsT~a 46 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQS 46 (243)
T ss_dssp CCEEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4456888999999998654
No 450
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=33.87 E-value=10 Score=29.95 Aligned_cols=16 Identities=31% Similarity=0.630 Sum_probs=13.1
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
.+...|++|||||.++
T Consensus 39 ~~~llGpnGsGKSTLL 54 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTL 54 (372)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCChHHHHH
Confidence 3456799999999887
No 451
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=33.66 E-value=14 Score=25.90 Aligned_cols=17 Identities=35% Similarity=0.346 Sum_probs=13.4
Q ss_pred eeEEeeccCCCCCceee
Q psy12524 46 ACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 46 ~~v~~yG~~~sGKt~t~ 62 (151)
..|...|..|||||...
T Consensus 5 ~~I~i~G~~GSGKST~~ 21 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVA 21 (218)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35677899999998754
No 452
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=33.41 E-value=9.9 Score=25.28 Aligned_cols=18 Identities=28% Similarity=0.326 Sum_probs=14.8
Q ss_pred CeeEEeeccCCCCCceee
Q psy12524 45 NACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 45 ~~~v~~yG~~~sGKt~t~ 62 (151)
...|+..|..++|||..+
T Consensus 6 ~~ki~v~G~~~~GKssl~ 23 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLT 23 (178)
T ss_dssp EEEEEEECCTTSSHHHHH
T ss_pred eEEEEEECcCCCCHHHHH
Confidence 346788999999999766
No 453
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=33.10 E-value=10 Score=27.23 Aligned_cols=19 Identities=42% Similarity=0.427 Sum_probs=15.6
Q ss_pred CCeeEEeeccCCCCCceee
Q psy12524 44 YNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 44 ~~~~v~~yG~~~sGKt~t~ 62 (151)
....|...|.+|+|||..+
T Consensus 28 ~~~~i~lvG~~g~GKStli 46 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATG 46 (239)
T ss_dssp CEEEEEEECCTTSSHHHHH
T ss_pred CceEEEEECCCCCCHHHHH
Confidence 3457889999999999766
No 454
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=33.00 E-value=13 Score=25.40 Aligned_cols=19 Identities=26% Similarity=0.443 Sum_probs=16.0
Q ss_pred CCeeEEeeccCCCCCceee
Q psy12524 44 YNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 44 ~~~~v~~yG~~~sGKt~t~ 62 (151)
....|+..|.+|+|||..+
T Consensus 27 ~~~ki~v~G~~~vGKSsli 45 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALV 45 (196)
T ss_dssp CCEEEEEECCTTSSHHHHH
T ss_pred CceEEEEECCCCCCHHHHH
Confidence 4567899999999999766
No 455
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=32.94 E-value=18 Score=28.23 Aligned_cols=28 Identities=32% Similarity=0.375 Sum_probs=20.0
Q ss_pred HHHHHhhc--CC--CeeEEeeccCCCCCceee
Q psy12524 35 DILDNAFQ--GY--NACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 35 ~lv~~~~~--G~--~~~v~~yG~~~sGKt~t~ 62 (151)
+-++.++. |. ...++.+|.+|+|||..+
T Consensus 49 ~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLa 80 (356)
T 1u94_A 49 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLT 80 (356)
T ss_dssp HHHHHHTSSSSEETTSEEEEECSTTSSHHHHH
T ss_pred HHHHHHhccCCccCCeEEEEECCCCCCHHHHH
Confidence 34566664 33 346788899999999876
No 456
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=32.81 E-value=27 Score=28.63 Aligned_cols=25 Identities=20% Similarity=0.299 Sum_probs=16.6
Q ss_pred HHHHhhcCCCeeEEeeccCCCCCceee
Q psy12524 36 ILDNAFQGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 36 lv~~~~~G~~~~v~~yG~~~sGKt~t~ 62 (151)
+.+.+..|.+. ++-.+||+|||...
T Consensus 15 v~~~l~~~~~~--~~~a~TGtGKT~~~ 39 (551)
T 3crv_A 15 VIEGLRNNFLV--ALNAPTGSGKTLFS 39 (551)
T ss_dssp HHHHHHTTCEE--EEECCTTSSHHHHH
T ss_pred HHHHHHcCCcE--EEECCCCccHHHHH
Confidence 33445567654 55568999998765
No 457
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=32.80 E-value=11 Score=27.27 Aligned_cols=16 Identities=44% Similarity=0.324 Sum_probs=12.6
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
.+-.-|++|||||..+
T Consensus 27 iigI~G~~GsGKSTl~ 42 (245)
T 2jeo_A 27 LIGVSGGTASGKSTVC 42 (245)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3455699999999876
No 458
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=32.60 E-value=12 Score=30.52 Aligned_cols=28 Identities=21% Similarity=0.406 Sum_probs=19.5
Q ss_pred HHHHHhhcC---CCeeEEeeccCCCCCceee
Q psy12524 35 DILDNAFQG---YNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 35 ~lv~~~~~G---~~~~v~~yG~~~sGKt~t~ 62 (151)
+.++.+.-| ....+...|.+|||||..+
T Consensus 26 ~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~ 56 (525)
T 1tf7_A 26 EGFDDISHGGLPIGRSTLVSGTSGTGKTLFS 56 (525)
T ss_dssp TTHHHHTTSSEETTSEEEEEESTTSSHHHHH
T ss_pred hhHHHhcCCCCCCCeEEEEEcCCCCCHHHHH
Confidence 345665542 3446677899999999876
No 459
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=32.60 E-value=10 Score=25.21 Aligned_cols=17 Identities=24% Similarity=0.475 Sum_probs=14.3
Q ss_pred eeEEeeccCCCCCceee
Q psy12524 46 ACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 46 ~~v~~yG~~~sGKt~t~ 62 (151)
..|+..|.+++|||..+
T Consensus 11 ~~i~v~G~~~~GKssli 27 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLL 27 (180)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECcCCCCHHHHH
Confidence 45788899999999766
No 460
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=32.58 E-value=15 Score=25.49 Aligned_cols=17 Identities=35% Similarity=0.296 Sum_probs=13.8
Q ss_pred eeEEeeccCCCCCceee
Q psy12524 46 ACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 46 ~~v~~yG~~~sGKt~t~ 62 (151)
..|+..|..|||||...
T Consensus 10 ~~I~l~G~~GsGKsT~~ 26 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQS 26 (215)
T ss_dssp CEEEEEESTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 35778899999998754
No 461
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=32.39 E-value=27 Score=26.44 Aligned_cols=28 Identities=21% Similarity=0.301 Sum_probs=19.7
Q ss_pred HHHHHhhcCCC--eeEEeeccCCCCCceee
Q psy12524 35 DILDNAFQGYN--ACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 35 ~lv~~~~~G~~--~~v~~yG~~~sGKt~t~ 62 (151)
+-++.++.|.. ..++..|.+|+|||..+
T Consensus 56 ~~LD~~lgGl~~G~l~li~G~pG~GKTtl~ 85 (315)
T 3bh0_A 56 TELDRMTYGYKRRNFVLIAARPSMGKTAFA 85 (315)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSSHHHHH
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCCHHHHH
Confidence 34556665553 35788899999999665
No 462
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=32.38 E-value=13 Score=28.26 Aligned_cols=16 Identities=25% Similarity=0.410 Sum_probs=12.8
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
.+..-|.+|||||..+
T Consensus 6 v~~i~G~~GaGKTTll 21 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLL 21 (318)
T ss_dssp EEEEEESSSSSCHHHH
T ss_pred EEEEEecCCCCHHHHH
Confidence 3456799999999876
No 463
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=32.24 E-value=16 Score=25.10 Aligned_cols=17 Identities=29% Similarity=0.499 Sum_probs=14.7
Q ss_pred eeEEeeccCCCCCceee
Q psy12524 46 ACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 46 ~~v~~yG~~~sGKt~t~ 62 (151)
..|+..|.+++|||..+
T Consensus 34 ~ki~vvG~~~~GKSsli 50 (199)
T 3l0i_B 34 FKLLLIGDSGVGKSCLL 50 (199)
T ss_dssp EEEEEECCTTSCCTTTT
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46788999999999877
No 464
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=32.15 E-value=11 Score=25.20 Aligned_cols=19 Identities=16% Similarity=0.146 Sum_probs=15.7
Q ss_pred CCeeEEeeccCCCCCceee
Q psy12524 44 YNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 44 ~~~~v~~yG~~~sGKt~t~ 62 (151)
....|+..|.+|+|||..+
T Consensus 7 ~~~ki~v~G~~~~GKssl~ 25 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLL 25 (182)
T ss_dssp CCCEEEEECSTTSSHHHHH
T ss_pred ceEEEEEECCCCCCHHHHH
Confidence 3456888999999999876
No 465
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=32.11 E-value=14 Score=28.35 Aligned_cols=16 Identities=25% Similarity=0.555 Sum_probs=13.4
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
.+...|.+|+|||.++
T Consensus 107 vI~ivG~~G~GKTT~~ 122 (320)
T 1zu4_A 107 IFMLVGVNGTGKTTSL 122 (320)
T ss_dssp EEEEESSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4566699999999888
No 466
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=32.02 E-value=10 Score=25.80 Aligned_cols=19 Identities=21% Similarity=0.389 Sum_probs=15.4
Q ss_pred CCeeEEeeccCCCCCceee
Q psy12524 44 YNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 44 ~~~~v~~yG~~~sGKt~t~ 62 (151)
....|+..|..|+|||..+
T Consensus 20 ~~~ki~v~G~~~~GKSsli 38 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTII 38 (190)
T ss_dssp -CEEEEEEECTTSSHHHHH
T ss_pred CccEEEEECCCCCCHHHHH
Confidence 3457889999999999876
No 467
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=32.00 E-value=11 Score=25.66 Aligned_cols=16 Identities=38% Similarity=0.609 Sum_probs=13.6
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
-+...|.+|+|||..+
T Consensus 4 kv~ivG~~gvGKStLl 19 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLL 19 (184)
T ss_dssp EEEEESCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678899999999876
No 468
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=31.99 E-value=15 Score=28.45 Aligned_cols=16 Identities=38% Similarity=0.256 Sum_probs=12.8
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
.+-..|.+|||||.++
T Consensus 94 iigI~GpsGSGKSTl~ 109 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTS 109 (321)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4555699999999876
No 469
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=31.96 E-value=11 Score=25.63 Aligned_cols=19 Identities=21% Similarity=0.212 Sum_probs=15.5
Q ss_pred CCeeEEeeccCCCCCceee
Q psy12524 44 YNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 44 ~~~~v~~yG~~~sGKt~t~ 62 (151)
....|+..|.+++|||..+
T Consensus 19 ~~~ki~v~G~~~~GKSsli 37 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLT 37 (189)
T ss_dssp CEEEEEEECCTTSSHHHHH
T ss_pred ceEEEEEECCCCCCHHHHH
Confidence 3457889999999999765
No 470
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=31.64 E-value=11 Score=28.53 Aligned_cols=15 Identities=33% Similarity=0.585 Sum_probs=12.4
Q ss_pred EEeeccCCCCCceee
Q psy12524 48 IFAYGQTGSGKSYTM 62 (151)
Q Consensus 48 v~~yG~~~sGKt~t~ 62 (151)
+...|++|||||..+
T Consensus 67 ~~i~G~NGsGKSTLl 81 (290)
T 2bbs_A 67 LAVAGSTGAGKTSLL 81 (290)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCCCcHHHHH
Confidence 356699999999876
No 471
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=31.41 E-value=11 Score=25.82 Aligned_cols=18 Identities=28% Similarity=0.433 Sum_probs=14.7
Q ss_pred CeeEEeeccCCCCCceee
Q psy12524 45 NACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 45 ~~~v~~yG~~~sGKt~t~ 62 (151)
...|+..|.+|+|||..+
T Consensus 8 ~~ki~v~G~~~~GKSsli 25 (207)
T 1vg8_A 8 LLKVIILGDSGVGKTSLM 25 (207)
T ss_dssp EEEEEEECCTTSSHHHHH
T ss_pred ceEEEEECcCCCCHHHHH
Confidence 346788999999999766
No 472
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=31.28 E-value=11 Score=25.41 Aligned_cols=17 Identities=35% Similarity=0.540 Sum_probs=14.3
Q ss_pred eeEEeeccCCCCCceee
Q psy12524 46 ACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 46 ~~v~~yG~~~sGKt~t~ 62 (151)
..|+..|..++|||..+
T Consensus 16 ~~i~v~G~~~~GKssli 32 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLL 32 (195)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 36788999999999766
No 473
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=31.24 E-value=14 Score=31.42 Aligned_cols=17 Identities=24% Similarity=0.135 Sum_probs=13.8
Q ss_pred eeEEeeccCCCCCceee
Q psy12524 46 ACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 46 ~~v~~yG~~~sGKt~t~ 62 (151)
..++..++||||||...
T Consensus 40 ~~~lv~apTGsGKT~~~ 56 (720)
T 2zj8_A 40 KNALISIPTASGKTLIA 56 (720)
T ss_dssp CEEEEECCGGGCHHHHH
T ss_pred CcEEEEcCCccHHHHHH
Confidence 45788899999999654
No 474
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=31.09 E-value=16 Score=31.64 Aligned_cols=15 Identities=40% Similarity=0.603 Sum_probs=12.7
Q ss_pred eEEeeccCCCCCcee
Q psy12524 47 CIFAYGQTGSGKSYT 61 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t 61 (151)
.++..|+||||||..
T Consensus 111 ~vii~gpTGSGKTtl 125 (773)
T 2xau_A 111 IMVFVGETGSGKTTQ 125 (773)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 467889999999984
No 475
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=31.06 E-value=12 Score=32.79 Aligned_cols=40 Identities=20% Similarity=0.263 Sum_probs=27.9
Q ss_pred eeEEeeccCCCCCceeecc------C-----------CCCCCcHHHHHHHHHHHHHh
Q psy12524 46 ACIFAYGQTGSGKSYTMMG------S-----------QDNKGIIPRLCDSLFDLIAK 85 (151)
Q Consensus 46 ~~v~~yG~~~sGKt~t~~G------~-----------~~~~Gli~~~~~~lf~~~~~ 85 (151)
..++.||+.|+|||....- . ....|--...++.+|.....
T Consensus 512 ~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~vGese~~vr~lF~~Ar~ 568 (806)
T 3cf2_A 512 KGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQ 568 (806)
T ss_dssp SCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTTTCSSCHHHHHHHHHHHHT
T ss_pred ceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhccccchHHHHHHHHHHHHHH
Confidence 3578999999999976521 0 12245667888899987653
No 476
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=37.25 E-value=10 Score=26.15 Aligned_cols=22 Identities=27% Similarity=0.409 Sum_probs=17.4
Q ss_pred hcCCCeeEEeeccCCCCCceee
Q psy12524 41 FQGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 41 ~~G~~~~v~~yG~~~sGKt~t~ 62 (151)
.......|+..|.+|+|||..+
T Consensus 26 ~~~~~~ki~v~G~~~~GKSsli 47 (204)
T 3th5_A 26 FQGQAIKCVVVGDGAVGKTCLL 47 (204)
Confidence 3345567888999999999877
No 477
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=30.98 E-value=12 Score=25.71 Aligned_cols=18 Identities=28% Similarity=0.453 Sum_probs=15.1
Q ss_pred CeeEEeeccCCCCCceee
Q psy12524 45 NACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 45 ~~~v~~yG~~~sGKt~t~ 62 (151)
...|+..|.+|+|||..+
T Consensus 26 ~~ki~vvG~~~~GKSsLi 43 (192)
T 2il1_A 26 KLQVIIIGSRGVGKTSLM 43 (192)
T ss_dssp EEEEEEECSTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 346788999999999876
No 478
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=30.83 E-value=16 Score=32.99 Aligned_cols=16 Identities=38% Similarity=0.505 Sum_probs=13.2
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
..+...+||||||.++
T Consensus 302 ~gli~~~TGSGKT~t~ 317 (1038)
T 2w00_A 302 GGYIWHTTGSGKTLTS 317 (1038)
T ss_dssp SEEEEECTTSSHHHHH
T ss_pred CEEEEecCCCCHHHHH
Confidence 3466779999999997
No 479
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=30.80 E-value=13 Score=26.91 Aligned_cols=19 Identities=37% Similarity=0.420 Sum_probs=15.7
Q ss_pred CCeeEEeeccCCCCCceee
Q psy12524 44 YNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 44 ~~~~v~~yG~~~sGKt~t~ 62 (151)
....|...|.+|+|||.++
T Consensus 21 ~~~~I~lvG~~g~GKStl~ 39 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAG 39 (260)
T ss_dssp CCEEEEEEECTTSCHHHHH
T ss_pred CceEEEEECCCCCCHHHHH
Confidence 3457888999999999876
No 480
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=30.77 E-value=13 Score=29.26 Aligned_cols=28 Identities=32% Similarity=0.417 Sum_probs=21.2
Q ss_pred HHHHHhhc--CC--CeeEEeeccCCCCCceee
Q psy12524 35 DILDNAFQ--GY--NACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 35 ~lv~~~~~--G~--~~~v~~yG~~~sGKt~t~ 62 (151)
+-++.++. |. ...+..+|++|+|||..+
T Consensus 47 ~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLa 78 (356)
T 3hr8_A 47 LAIDIATGVGGYPRGRIVEIFGQESSGKTTLA 78 (356)
T ss_dssp HHHHHHTSSSSEETTEEEEEEESTTSSHHHHH
T ss_pred HHHHHHhccCCccCCcEEEEECCCCCCHHHHH
Confidence 55677776 43 346788999999999876
No 481
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=30.73 E-value=31 Score=28.30 Aligned_cols=23 Identities=17% Similarity=0.320 Sum_probs=15.5
Q ss_pred HHhhcCCCeeEEeeccCCCCCceee
Q psy12524 38 DNAFQGYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 38 ~~~~~G~~~~v~~yG~~~sGKt~t~ 62 (151)
+.+..|.+ +++-.+||+|||...
T Consensus 21 ~~~~~~~~--~~~~a~TGtGKT~~~ 43 (540)
T 2vl7_A 21 NALKHGKT--LLLNAKPGLGKTVFV 43 (540)
T ss_dssp HHHHTTCE--EEEECCTTSCHHHHH
T ss_pred HHHHcCCC--EEEEcCCCCcHHHHH
Confidence 44456664 455568999999754
No 482
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=30.72 E-value=7 Score=34.06 Aligned_cols=17 Identities=29% Similarity=0.602 Sum_probs=14.8
Q ss_pred eeEEeeccCCCCCceee
Q psy12524 46 ACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 46 ~~v~~yG~~~sGKt~t~ 62 (151)
..++.||++|+|||...
T Consensus 512 ~~vLL~GppGtGKT~La 528 (806)
T 1ypw_A 512 KGVLFYGPPGCGKTLLA 528 (806)
T ss_dssp CCCCCBCCTTSSHHHHH
T ss_pred ceeEEECCCCCCHHHHH
Confidence 45789999999999876
No 483
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=30.69 E-value=12 Score=25.44 Aligned_cols=17 Identities=18% Similarity=0.315 Sum_probs=14.7
Q ss_pred eeEEeeccCCCCCceee
Q psy12524 46 ACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 46 ~~v~~yG~~~sGKt~t~ 62 (151)
..|+..|..++|||..+
T Consensus 23 ~ki~vvG~~~~GKSsli 39 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFL 39 (189)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46788999999999876
No 484
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=30.67 E-value=11 Score=25.50 Aligned_cols=18 Identities=22% Similarity=0.377 Sum_probs=14.8
Q ss_pred CeeEEeeccCCCCCceee
Q psy12524 45 NACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 45 ~~~v~~yG~~~sGKt~t~ 62 (151)
...|+..|..|+|||..+
T Consensus 7 ~~ki~v~G~~~vGKSsli 24 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALL 24 (184)
T ss_dssp EEEEEEEESTTSSHHHHH
T ss_pred EEEEEEECCCCCCHHHHH
Confidence 345788899999999776
No 485
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=30.64 E-value=11 Score=30.72 Aligned_cols=18 Identities=22% Similarity=0.540 Sum_probs=15.2
Q ss_pred eEEeeccCCCCCceeecc
Q psy12524 47 CIFAYGQTGSGKSYTMMG 64 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~~G 64 (151)
..+..|..|||||+.+..
T Consensus 163 v~~I~G~aGsGKTt~I~~ 180 (446)
T 3vkw_A 163 VVLVDGVPGCGKTKEILS 180 (446)
T ss_dssp EEEEEECTTSCHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHH
Confidence 457889999999999954
No 486
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=30.52 E-value=12 Score=25.70 Aligned_cols=17 Identities=24% Similarity=0.346 Sum_probs=14.3
Q ss_pred eeEEeeccCCCCCceee
Q psy12524 46 ACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 46 ~~v~~yG~~~sGKt~t~ 62 (151)
..|+..|..|+|||..+
T Consensus 9 ~ki~v~G~~~~GKSsli 25 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFL 25 (203)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45788999999999766
No 487
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=30.37 E-value=11 Score=25.71 Aligned_cols=18 Identities=33% Similarity=0.458 Sum_probs=15.1
Q ss_pred CeeEEeeccCCCCCceee
Q psy12524 45 NACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 45 ~~~v~~yG~~~sGKt~t~ 62 (151)
...|+..|.+|+|||..+
T Consensus 23 ~~ki~vvG~~~~GKSsli 40 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIV 40 (192)
T ss_dssp EEEEEEEECTTSSHHHHH
T ss_pred ceEEEEECcCCCCHHHHH
Confidence 456888999999999766
No 488
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=30.31 E-value=12 Score=25.35 Aligned_cols=17 Identities=29% Similarity=0.499 Sum_probs=14.4
Q ss_pred eeEEeeccCCCCCceee
Q psy12524 46 ACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 46 ~~v~~yG~~~sGKt~t~ 62 (151)
..|+..|.+++|||..+
T Consensus 17 ~ki~v~G~~~~GKSsli 33 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLL 33 (196)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECcCCCCHHHHH
Confidence 46888999999999765
No 489
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=30.29 E-value=19 Score=28.61 Aligned_cols=20 Identities=30% Similarity=0.381 Sum_probs=16.1
Q ss_pred CCCeeEEeeccCCCCCceee
Q psy12524 43 GYNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 43 G~~~~v~~yG~~~sGKt~t~ 62 (151)
.....|+..|.+|||||...
T Consensus 256 ~~~~lIil~G~pGSGKSTla 275 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFI 275 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHH
Confidence 44567888999999999765
No 490
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=30.26 E-value=27 Score=25.49 Aligned_cols=19 Identities=32% Similarity=0.532 Sum_probs=15.8
Q ss_pred CCeeEEeeccCCCCCceee
Q psy12524 44 YNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 44 ~~~~v~~yG~~~sGKt~t~ 62 (151)
....|...|.+|+|||..+
T Consensus 35 ~~~~I~lvG~~g~GKSSLi 53 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTV 53 (262)
T ss_dssp CEEEEEEEECTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4567889999999999766
No 491
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=30.13 E-value=11 Score=25.90 Aligned_cols=17 Identities=29% Similarity=0.495 Sum_probs=14.4
Q ss_pred eeEEeeccCCCCCceee
Q psy12524 46 ACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 46 ~~v~~yG~~~sGKt~t~ 62 (151)
..|+..|.+|+|||..+
T Consensus 9 ~ki~v~G~~~~GKSsli 25 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLL 25 (206)
T ss_dssp EEEEEEESTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35788899999999766
No 492
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=30.08 E-value=12 Score=25.46 Aligned_cols=17 Identities=35% Similarity=0.438 Sum_probs=14.5
Q ss_pred eeEEeeccCCCCCceee
Q psy12524 46 ACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 46 ~~v~~yG~~~sGKt~t~ 62 (151)
..|+..|..|+|||..+
T Consensus 22 ~ki~v~G~~~~GKSsli 38 (191)
T 2a5j_A 22 FKYIIIGDTGVGKSCLL 38 (191)
T ss_dssp EEEEEESSTTSSHHHHH
T ss_pred eEEEEECcCCCCHHHHH
Confidence 35788999999999876
No 493
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=29.95 E-value=12 Score=25.49 Aligned_cols=19 Identities=26% Similarity=0.394 Sum_probs=15.8
Q ss_pred CCeeEEeeccCCCCCceee
Q psy12524 44 YNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 44 ~~~~v~~yG~~~sGKt~t~ 62 (151)
....|+..|..|+|||..+
T Consensus 20 ~~~ki~vvG~~~vGKTsLi 38 (187)
T 3c5c_A 20 LEVNLAILGRRGAGKSALT 38 (187)
T ss_dssp CEEEEEEECCTTSSHHHHH
T ss_pred ceEEEEEECCCCCcHHHHH
Confidence 3456889999999999876
No 494
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=29.92 E-value=10 Score=25.55 Aligned_cols=19 Identities=16% Similarity=0.281 Sum_probs=15.3
Q ss_pred CCeeEEeeccCCCCCceee
Q psy12524 44 YNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 44 ~~~~v~~yG~~~sGKt~t~ 62 (151)
....|+..|..++|||..+
T Consensus 20 ~~~~i~v~G~~~~GKSsli 38 (181)
T 2h17_A 20 QEHKVIIVGLDNAGKTTIL 38 (181)
T ss_dssp -CEEEEEEEETTSSHHHHH
T ss_pred ceeEEEEECCCCCCHHHHH
Confidence 3457889999999999876
No 495
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=29.82 E-value=12 Score=25.66 Aligned_cols=19 Identities=26% Similarity=0.205 Sum_probs=15.4
Q ss_pred CCeeEEeeccCCCCCceee
Q psy12524 44 YNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 44 ~~~~v~~yG~~~sGKt~t~ 62 (151)
....|+..|.+++|||..+
T Consensus 27 ~~~ki~v~G~~~~GKSsli 45 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFL 45 (199)
T ss_dssp -CEEEEEESSTTSSHHHHH
T ss_pred CCeEEEEECcCCCCHHHHH
Confidence 3457889999999999866
No 496
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=29.78 E-value=12 Score=25.39 Aligned_cols=18 Identities=22% Similarity=0.141 Sum_probs=14.9
Q ss_pred CeeEEeeccCCCCCceee
Q psy12524 45 NACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 45 ~~~v~~yG~~~sGKt~t~ 62 (151)
...|+..|..++|||..+
T Consensus 22 ~~ki~v~G~~~~GKSsli 39 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFV 39 (188)
T ss_dssp EEEEEEECSTTSSHHHHH
T ss_pred ccEEEEECCCCCCHHHHH
Confidence 446788999999999766
No 497
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=29.75 E-value=12 Score=25.37 Aligned_cols=19 Identities=21% Similarity=0.286 Sum_probs=15.6
Q ss_pred CCeeEEeeccCCCCCceee
Q psy12524 44 YNACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 44 ~~~~v~~yG~~~sGKt~t~ 62 (151)
....|+..|..++|||..+
T Consensus 16 ~~~ki~v~G~~~~GKSsl~ 34 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTII 34 (199)
T ss_dssp CEEEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3456889999999999766
No 498
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=29.68 E-value=12 Score=25.07 Aligned_cols=17 Identities=29% Similarity=0.194 Sum_probs=14.2
Q ss_pred eeEEeeccCCCCCceee
Q psy12524 46 ACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 46 ~~v~~yG~~~sGKt~t~ 62 (151)
..|+..|.+|+|||..+
T Consensus 7 ~ki~~~G~~~~GKSsli 23 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLT 23 (181)
T ss_dssp EEEEEEESTTSSHHHHH
T ss_pred EEEEEECcCCCCHHHHH
Confidence 35788999999999765
No 499
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=29.66 E-value=12 Score=25.46 Aligned_cols=18 Identities=28% Similarity=0.510 Sum_probs=15.0
Q ss_pred CeeEEeeccCCCCCceee
Q psy12524 45 NACIFAYGQTGSGKSYTM 62 (151)
Q Consensus 45 ~~~v~~yG~~~sGKt~t~ 62 (151)
...|+..|.+++|||..+
T Consensus 8 ~~ki~vvG~~~~GKSsli 25 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLV 25 (199)
T ss_dssp CEEEEEEECTTSSHHHHH
T ss_pred eeEEEEECCCCCcHHHHH
Confidence 456888999999999776
No 500
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=29.58 E-value=19 Score=24.77 Aligned_cols=16 Identities=31% Similarity=0.339 Sum_probs=13.0
Q ss_pred eEEeeccCCCCCceee
Q psy12524 47 CIFAYGQTGSGKSYTM 62 (151)
Q Consensus 47 ~v~~yG~~~sGKt~t~ 62 (151)
.+..-|..|||||...
T Consensus 4 ~i~i~G~~GsGKst~~ 19 (208)
T 3ake_A 4 IVTIDGPSASGKSSVA 19 (208)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4667799999999765
Done!