RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12524
(151 letters)
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics,
structural genomics consortium, SGC, ATP-binding,
microtubule, motor protein; HET: ADP; 2.10A {Homo
sapiens}
Length = 354
Score = 265 bits (681), Expect = 1e-90
Identities = 97/145 (66%), Positives = 119/145 (82%), Gaps = 1/145 (0%)
Query: 1 KPPKTFAFDHCFYSLDPNL-PNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKS 59
PK FA+DHCF+S+D ++ +A Q+ VF LG +IL NAF GYNACIFAYGQTGSGKS
Sbjct: 48 GQPKVFAYDHCFWSMDESVKEKYAGQDIVFKCLGENILQNAFDGYNACIFAYGQTGSGKS 107
Query: 60 YTMMGSQDNKGIIPRLCDSLFDLIAKQESSELTYKVEVSYMEIYNEKVHDLLDPKANKQS 119
YTMMG+ D G+IPRLC LF+ K+E+ E ++KVEVSYMEIYNEKV DLLDPK ++Q+
Sbjct: 108 YTMMGTADQPGLIPRLCSGLFERTQKEENEEQSFKVEVSYMEIYNEKVRDLLDPKGSRQT 167
Query: 120 LKVREHNVLGPYVDGLSQLAVTSFQ 144
LKVREH+VLGPYVDGLS+LAVTS++
Sbjct: 168 LKVREHSVLGPYVDGLSKLAVTSYK 192
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha
and beta protein, enzyme, ATPase, P-loop, motor protein,
ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus}
SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A*
2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C*
1ia0_K* 2hxh_C*
Length = 366
Score = 252 bits (647), Expect = 3e-85
Identities = 82/147 (55%), Positives = 113/147 (76%), Gaps = 4/147 (2%)
Query: 1 KPPKTFAFDHCFYSLD-PNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKS 59
+ PK+F+FD+ ++S P N+ASQ++V+ +G ++L +AF+GYN CIFAYGQTG+GKS
Sbjct: 45 ETPKSFSFDYSYWSHTSPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKS 104
Query: 60 YTMMGSQD--NKGIIPRLCDSLFDLIAKQESSELTYKVEVSYMEIYNEKVHDLLDPKANK 117
YTMMG Q+ +GIIP+LC+ LF I + ++Y VEVSYMEIY E+V DLL+PK NK
Sbjct: 105 YTMMGKQEKDQQGIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPK-NK 163
Query: 118 QSLKVREHNVLGPYVDGLSQLAVTSFQ 144
+L+VREH +LGPYV+ LS+LAVTS+
Sbjct: 164 GNLRVREHPLLGPYVEDLSKLAVTSYN 190
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain,
ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora
crassa}
Length = 443
Score = 254 bits (652), Expect = 6e-85
Identities = 72/149 (48%), Positives = 97/149 (65%), Gaps = 5/149 (3%)
Query: 1 KPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSY 60
K+F FD F+S + ++A+QE V+D+LG + LD+ F+GY+ CIFAYGQTGSGKSY
Sbjct: 93 LEEKSFTFDKSFWSHNTEDEHYATQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSY 152
Query: 61 TMMGSQDNKGIIPRLCDSLFDLIA--KQESSELTYKVEVSYMEIYNEKVHDLLDP---KA 115
TMMG+ D G+IPR C+ LF IA + E+ ++Y V+VSY E+YNE V DLL P
Sbjct: 153 TMMGTPDQPGLIPRTCEDLFQRIASAQDETPNISYNVKVSYFEVYNEHVRDLLAPVVPNK 212
Query: 116 NKQSLKVREHNVLGPYVDGLSQLAVTSFQ 144
LKVRE GPYV L+++ V +
Sbjct: 213 PPYYLKVRESPTEGPYVKDLTEVPVRGLE 241
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP
complex, stranded beta-sheet core with solvent exposed
alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Length = 349
Score = 229 bits (587), Expect = 2e-76
Identities = 55/144 (38%), Positives = 81/144 (56%), Gaps = 9/144 (6%)
Query: 1 KPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSY 60
K+F FD F+ + + V++ + I+D+A QGYN IFAYGQT SGK+Y
Sbjct: 41 DGSKSFNFDRVFHG-------NETTKNVYEEIAAPIIDSAIQGYNGTIFAYGQTASGKTY 93
Query: 61 TMMGSQDNKGIIPRLCDSLFDLIAKQESSELTYKVEVSYMEIYNEKVHDLLDPKANKQSL 120
TMMGS+D+ G+IPR +F I ++ + + + VSYMEIYNE + DLL + L
Sbjct: 94 TMMGSEDHLGVIPRAIHDIFQKI--KKFPDREFLLRVSYMEIYNETITDLLCGTQKMKPL 151
Query: 121 KVREHNVLGPYVDGLSQLAVTSFQ 144
+RE YV L++ V + +
Sbjct: 152 IIREDVNRNVYVADLTEEVVYTSE 175
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule,
ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Length = 350
Score = 225 bits (576), Expect = 1e-74
Identities = 54/144 (37%), Positives = 79/144 (54%), Gaps = 11/144 (7%)
Query: 1 KPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSY 60
K P+TF FD + D + +F A + ++D +G+N+ IFAYGQTG+GK++
Sbjct: 53 KVPRTFTFDAVY---DQT----SCNYGIFQASFKPLIDAVLEGFNSTIFAYGQTGAGKTW 105
Query: 61 TMMGSQDNKGIIPRLCDSLFDLIAKQESSELTYKVEVSYMEIYNEKVHDLLDPKANKQSL 120
TM G+++ G IP LFD I SS + V SY+E+YNE++ DL+ L
Sbjct: 106 TMGGNKEEPGAIPNSFKHLFDAI-NSSSSNQNFLVIGSYLELYNEEIRDLIKNNTK---L 161
Query: 121 KVREHNVLGPYVDGLSQLAVTSFQ 144
++E G YVDGLS VT+
Sbjct: 162 PLKEDKTRGIYVDGLSMHRVTTAA 185
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor
domain, ADP, SGC, ATP-binding, coiled coil, microtubule,
motor protein; HET: ADP; 1.80A {Homo sapiens} PDB:
3b6v_A*
Length = 372
Score = 223 bits (571), Expect = 1e-73
Identities = 53/147 (36%), Positives = 81/147 (55%), Gaps = 13/147 (8%)
Query: 1 KPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSY 60
+ PKTF FD + A Q +++D R ++D+ QG+N IFAYGQTG+GK+Y
Sbjct: 65 EMPKTFTFDAVY-------DWNAKQFELYDETFRPLVDSVLQGFNGTIFAYGQTGTGKTY 117
Query: 61 TMMG---SQDNKGIIPRLCDSLFDLIAKQESSELTYKVEVSYMEIYNEKVHDLLDPKANK 117
TM G + +G+IP D +F I++ ++ + Y V SY+EIY E++ DLL
Sbjct: 118 TMEGIRGDPEKRGVIPNSFDHIFTHISRSQNQQ--YLVRASYLEIYQEEIRDLLSKD-QT 174
Query: 118 QSLKVREHNVLGPYVDGLSQLAVTSFQ 144
+ L+++E G YV LS S +
Sbjct: 175 KRLELKERPDTGVYVKDLSSFVTKSVK 201
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding,
microtubule binding, ATP- cell projection, cytoskeleton,
glycoprotein, microtubule; HET: ADP; 2.20A {Homo
sapiens}
Length = 355
Score = 222 bits (569), Expect = 2e-73
Identities = 46/144 (31%), Positives = 68/144 (47%), Gaps = 11/144 (7%)
Query: 1 KPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSY 60
F FD F ++Q +VF+ + IL + GYN + AYG TG+GK++
Sbjct: 69 NKDLKFVFDAVF-------DETSTQSEVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTH 121
Query: 61 TMMGSQDNKGIIPRLCDSLFDLIAKQESSELTYKVEVSYMEIYNEKVHDLLDPKANKQSL 120
TM+GS D G++ L+ + + E VSY+E+YNE++ DLL L
Sbjct: 122 TMLGSADEPGVMYLTMLHLYKCMDEI-KEEKICSTAVSYLEVYNEQIRDLLVNSGP---L 177
Query: 121 KVREHNVLGPYVDGLSQLAVTSFQ 144
VRE G V GL+ S +
Sbjct: 178 AVREDTQKGVVVHGLTLHQPKSSE 201
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A
{Neurospora crassa} SCOP: c.37.1.9
Length = 355
Score = 218 bits (557), Expect = 9e-72
Identities = 58/148 (39%), Positives = 81/148 (54%), Gaps = 14/148 (9%)
Query: 1 KPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSY 60
+ +F FD F Q +FD + +D+ GYN +FAYGQTG+GKSY
Sbjct: 44 EAQGSFTFDRVFDM-------SCKQSDIFDFSIKPTVDDILNGYNGTVFAYGQTGAGKSY 96
Query: 61 TMMG----SQDNKGIIPRLCDSLFDLIAKQESSELTYKVEVSYMEIYNEKVHDLLDPKAN 116
TMMG D +G+IPR+ + +F I ++ + Y V VSYMEIY E++ DLL P+
Sbjct: 97 TMMGTSIDDPDGRGVIPRIVEQIFTSIL-SSAANIEYTVRVSYMEIYMERIRDLLAPQ-- 153
Query: 117 KQSLKVREHNVLGPYVDGLSQLAVTSFQ 144
+L V E G YV GL ++ V+S Q
Sbjct: 154 NDNLPVHEEKNRGVYVKGLLEIYVSSVQ 181
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural
genomics consortium domain, ADP, SGC, ATP-binding,
DNA-binding, microtubule, MO protein; HET: ADP; 2.30A
{Homo sapiens}
Length = 388
Score = 214 bits (548), Expect = 6e-70
Identities = 49/146 (33%), Positives = 75/146 (51%), Gaps = 11/146 (7%)
Query: 1 KPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSY 60
+ + FD + ++Q+ ++ + IL + +G NA + AYG TG+GK++
Sbjct: 62 QETLKYQFDAFY---GER----STQQDIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTH 114
Query: 61 TMMGSQDNKGIIPRLCDSLFDLIAKQ--ESSELTYKVEVSYMEIYNEKVHDLLDPKANKQ 118
TM+GS + G+IPR L L ++ E V +SY+EIY EKV DLLDP
Sbjct: 115 TMLGSPEQPGVIPRALMDLLQLTREEGAEGRPWALSVTMSYLEIYQEKVLDLLDPA--SG 172
Query: 119 SLKVREHNVLGPYVDGLSQLAVTSFQ 144
L +RE + GLSQ ++SF
Sbjct: 173 DLVIREDCRGNILIPGLSQKPISSFA 198
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain;
HET: ADP; 1.60A {Homo sapiens} PDB: 2xt3_A*
Length = 344
Score = 213 bits (544), Expect = 6e-70
Identities = 49/149 (32%), Positives = 76/149 (51%), Gaps = 15/149 (10%)
Query: 2 PPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYT 61
+ F F + A QE V+ A + +L+ F+G+NA +FAYGQTGSGK+YT
Sbjct: 48 RDRHFGFHVVL---AED----AGQEAVYQACVQPLLEAFFEGFNATVFAYGQTGSGKTYT 100
Query: 62 MMGS------QDNKGIIPRLCDSLFDLIAKQESSELTYKVEVSYMEIYNEKVHDLLDPKA 115
M + +D +GI+PR F LI E+ L V VSY+E+Y E+ DLL+
Sbjct: 101 MGEASVASLLEDEQGIVPRAMAEAFKLI--DENDLLDCLVHVSYLEVYKEEFRDLLEVGT 158
Query: 116 NKQSLKVREHNVLGPYVDGLSQLAVTSFQ 144
+ +++RE + G+ ++ V
Sbjct: 159 ASRDIQLREDERGNVVLCGVKEVDVEGLD 187
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP;
1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A*
2kin_A* 3kin_A*
Length = 325
Score = 208 bits (531), Expect = 3e-68
Identities = 56/146 (38%), Positives = 79/146 (54%), Gaps = 13/146 (8%)
Query: 2 PPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYT 61
K +AFD F S SQE+V++ + I+ + +GYN IFAYGQT SGK++T
Sbjct: 42 ASKPYAFDRVFQS-------STSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHT 94
Query: 62 MMGSQDN---KGIIPRLCDSLFDLIAKQESSELTYKVEVSYMEIYNEKVHDLLDPKANKQ 118
M G + GIIPR+ +F+ I L + ++VSY EIY +K+ DLLD +K
Sbjct: 95 MEGKLHDPEGMGIIPRIVQDIFNYI-YSMDENLEFHIKVSYFEIYLDKIRDLLDV--SKT 151
Query: 119 SLKVREHNVLGPYVDGLSQLAVTSFQ 144
+L V E PYV G ++ V S
Sbjct: 152 NLSVHEDKNRVPYVKGCTERFVCSPD 177
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A
{Drosophila melanogaster} PDB: 2y5w_A*
Length = 365
Score = 208 bits (531), Expect = 1e-67
Identities = 59/147 (40%), Positives = 84/147 (57%), Gaps = 13/147 (8%)
Query: 1 KPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSY 60
K + FD F PN ASQEKV++ + I+ + GYN IFAYGQT SGK++
Sbjct: 48 IAGKVYLFDKVF---KPN----ASQEKVYNEAAKSIVTDVLAGYNGTIFAYGQTSSGKTH 100
Query: 61 TMMGS---QDNKGIIPRLCDSLFDLIAKQESSELTYKVEVSYMEIYNEKVHDLLDPKANK 117
TM G +GIIPR+ + +F+ I E + L + ++VSY EIY +K+ DLLD +K
Sbjct: 101 TMEGVIGDSVKQGIIPRIVNDIFNHIYAMEVN-LEFHIKVSYYEIYMDKIRDLLDV--SK 157
Query: 118 QSLKVREHNVLGPYVDGLSQLAVTSFQ 144
+L V E PYV G ++ V+S +
Sbjct: 158 VNLSVHEDKNRVPYVKGATERFVSSPE 184
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics,
structural genomics consortium, SGC, contractIle
protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Length = 358
Score = 205 bits (524), Expect = 8e-67
Identities = 49/151 (32%), Positives = 78/151 (51%), Gaps = 18/151 (11%)
Query: 1 KPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSY 60
+ +F D + ASQ+ V++ + +D++ A GYN I YGQTG+GK+Y
Sbjct: 68 QTDWSFKLDGVL--------HDASQDLVYETVAKDVVSQALDGYNGTIMCYGQTGAGKTY 119
Query: 61 TMMGSQDN---KGIIPRLCDSLFDLIAKQESSELTYKVEVSYMEIYNEKVHDLLDPKA-- 115
TMMG+ +N +GI+PR +F +I +E V VSY+EIYNE + DLL
Sbjct: 120 TMMGATENYKHRGILPRALQQVFRMI--EERPTHAITVRVSYLEIYNESLFDLLSTLPYV 177
Query: 116 --NKQSLKVREHNVLGPYVDGLSQLAVTSFQ 144
+ + + E+ G ++ GLS + +
Sbjct: 178 GPSVTPMTIVENP-QGVFIKGLSVHLTSQEE 207
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule,
ADP, nucleotide-binding protein, ATP-binding, coiled
coil, motor protein; HET: ADP; 1.90A {Drosophila
melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Length = 344
Score = 203 bits (520), Expect = 2e-66
Identities = 44/150 (29%), Positives = 72/150 (48%), Gaps = 22/150 (14%)
Query: 2 PPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYT 61
F FDH F P SQ++++ AL ++D +G+ AYGQTG+GKSY+
Sbjct: 59 DQNEFHFDHAF-------PATISQDEMYQALILPLVDKLLEGFQCTALAYGQTGTGKSYS 111
Query: 62 MMGSQ------DNKGIIPRLCDSLFDLI-AKQESSELTYKVEVSYMEIYNEKVHDLLDPK 114
M + ++ GI+PR +F+ + A+QE+++ +V S++EIYNEK DLL
Sbjct: 112 MGMTPPGEILPEHLGILPRALGDIFERVTARQENNKDAIQVYASFIEIYNEKPFDLLGST 171
Query: 115 ANKQSLKVREHNVLGPYVDGLSQLAVTSFQ 144
++ + L + S
Sbjct: 172 --------PHMPMVAARCQRCTCLPLHSQA 193
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker,
cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP:
c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A*
2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A*
2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A*
1q0b_A* ...
Length = 359
Score = 201 bits (514), Expect = 3e-65
Identities = 50/157 (31%), Positives = 79/157 (50%), Gaps = 24/157 (15%)
Query: 2 PPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYT 61
KT+ FD F + Q V+ ++ ILD GYN IFAYGQTG+GK++T
Sbjct: 53 SRKTYTFDMVFGA-------STKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFT 105
Query: 62 MMGSQD-----------NKGIIPRLCDSLFDLIAKQESSELTYKVEVSYMEIYNEKVHDL 110
M G + GIIPR +F+ + + + V+VS +EIYNE++ DL
Sbjct: 106 MEGERSPNEEYTWEEDPLAGIIPRTLHQIFEKL---TDNGTEFSVKVSLLEIYNEELFDL 162
Query: 111 LDPKAN-KQSLKVREH--NVLGPYVDGLSQLAVTSFQ 144
L+P ++ + L++ + N G + GL ++ V +
Sbjct: 163 LNPSSDVSERLQMFDDPRNKRGVIIKGLEEITVHNKD 199
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P;
HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB:
1v8j_A* 2gry_A*
Length = 410
Score = 202 bits (515), Expect = 8e-65
Identities = 53/149 (35%), Positives = 70/149 (46%), Gaps = 16/149 (10%)
Query: 2 PPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYT 61
+ F FD F D AS E V+ R ++ F+G A FAYGQTGSGK++T
Sbjct: 119 ENQAFCFDFAF---DET----ASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHT 171
Query: 62 MMG------SQDNKGIIPRLCDSLFDLIAKQESSELTYKVEVSYMEIYNEKVHDLLDPKA 115
M G +KGI +F L + L +V V++ EIYN KV DLL+ KA
Sbjct: 172 MGGDLSGKSQNASKGIYAMASRDVFLLKNQPRYRNLNLEVYVTFFEIYNGKVFDLLNKKA 231
Query: 116 NKQSLKVREHNVLGPYVDGLSQLAVTSFQ 144
L+V E + V GL + VT
Sbjct: 232 K---LRVLEDSRQQVQVVGLQEYLVTCAD 257
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics,
structural genomics consortium, SGC, structural protein;
HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Length = 387
Score = 200 bits (512), Expect = 1e-64
Identities = 51/149 (34%), Positives = 69/149 (46%), Gaps = 16/149 (10%)
Query: 2 PPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYT 61
+ F FD F D AS E V+ R ++ F+G A FAYGQTGSGK++T
Sbjct: 99 ENQAFCFDFAF---DET----ASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHT 151
Query: 62 MMG------SQDNKGIIPRLCDSLFDLIAKQESSELTYKVEVSYMEIYNEKVHDLLDPKA 115
M G +KGI +F L + +L +V V++ EIYN K+ DLL+
Sbjct: 152 MGGDLSGKAQNASKGIYAMASRDVFLLKNQPCYRKLGLEVYVTFFEIYNGKLFDLLNK-- 209
Query: 116 NKQSLKVREHNVLGPYVDGLSQLAVTSFQ 144
K L+V E V GL + V S
Sbjct: 210 -KAKLRVLEDGKQQVQVVGLQEHLVNSAD 237
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis,
GTP-binding, motor protein, cell division, cell cycle,
microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A
{Drosophila melanogaster}
Length = 373
Score = 195 bits (497), Expect = 2e-62
Identities = 47/157 (29%), Positives = 76/157 (48%), Gaps = 24/157 (15%)
Query: 1 KPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSY 60
K K F FD F P + Q V+ + +++ GYN +FAYGQTG+GK++
Sbjct: 64 KLTKKFTFDRSF---GPE----SKQCDVYSVVVSPLIEEVLNGYNCTVFAYGQTGTGKTH 116
Query: 61 TMMG-----------SQDNKGIIPRLCDSLFDLIAKQESSELTYKVEVSYMEIYNEKVHD 109
TM+G + GIIPR LFD + E+ Y + +SY+E+YNE++ D
Sbjct: 117 TMVGNETAELKSSWEDDSDIGIIPRALSHLFDEL---RMMEVEYTMRISYLELYNEELCD 173
Query: 110 LLDPKANKQSLKVREHNVL--GPYVDGLSQLAVTSFQ 144
LL + +++ + + + GL ++ V S
Sbjct: 174 LLSTD-DTTKIRIFDDSTKKGSVIIQGLEEIPVHSKD 209
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing
nucleosi triphosphate hydrolases, microtubule motor
protein; HET: ADP; 2.35A {Ashbya gossypii}
Length = 349
Score = 191 bits (488), Expect = 2e-61
Identities = 47/154 (30%), Positives = 79/154 (51%), Gaps = 20/154 (12%)
Query: 1 KPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSY 60
F FD F +P+ + +++F+ + R ++ ++ GYN CIFAYGQTGSGK+Y
Sbjct: 50 ILSYNFQFDMIF---EPS----HTNKEIFEEI-RQLVQSSLDGYNVCIFAYGQTGSGKTY 101
Query: 61 TMMGSQDNKGIIPRLCDSLFDLIAKQESSELTYKVEVSYMEIYNEKVHDLLDPKANKQSL 120
TM+ + D G+IP +F A + Y++E Y+EIYNE + DLL + ++
Sbjct: 102 TMLNAGD--GMIPMTLSHIFKWTANLKERGWNYEMECEYIEIYNETILDLLRDFKSHDNI 159
Query: 121 KV----------REHNVLGPYVDGLSQLAVTSFQ 144
+H G Y+ ++++ +TS
Sbjct: 160 DEILDSQKHDIRHDHEKQGTYITNVTRMKMTSTS 193
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11,
conformation, nucleotide, ATP-binding, microtubule,
motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP:
c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Length = 369
Score = 192 bits (489), Expect = 3e-61
Identities = 45/144 (31%), Positives = 87/144 (60%), Gaps = 10/144 (6%)
Query: 2 PPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYT 61
K +D F D N A+Q+ VF+ + ++ +A GYN CIFAYGQTGSGK++T
Sbjct: 45 KAKQHMYDRVF---DGN----ATQDDVFEDT-KYLVQSAVDGYNVCIFAYGQTGSGKTFT 96
Query: 62 MMGSQDNKGIIPRLCDSLFDLIAKQESSELTYKVEVSYMEIYNEKVHDLLDPK-ANKQSL 120
+ G+ N G+ PR LF ++ K++S++ ++ ++ +E+Y + + DLL PK A + L
Sbjct: 97 IYGADSNPGLTPRAMSELFRIM-KKDSNKFSFSLKAYMVELYQDTLVDLLLPKQAKRLKL 155
Query: 121 KVREHNVLGPYVDGLSQLAVTSFQ 144
+++ + V+ ++ +++++++
Sbjct: 156 DIKKDSKGMVSVENVTVVSISTYE 179
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor
domain, ADP, binding, cell cycle, cell division,
endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Length = 376
Score = 185 bits (472), Expect = 9e-59
Identities = 50/153 (32%), Positives = 71/153 (46%), Gaps = 17/153 (11%)
Query: 1 KPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSY 60
P F+FD F P + Q++VF+ + ++ +A GY CIFAYGQTGSGK++
Sbjct: 80 PPRHDFSFDRVF---PPG----SGQDEVFEEI-AMLVQSALDGYPVCIFAYGQTGSGKTF 131
Query: 61 TMMG----SQDNKGIIPRLCDSLFDLIAKQESSELTYKVEVSYMEIYNEKVHDLLDPKAN 116
TM G +G+IPR LF + + TY SY+EIYNE V DLL
Sbjct: 132 TMEGGPGGDPQLEGLIPRALRHLFSVAQELSGQGWTYSFVASYVEIYNETVRDLLATGTR 191
Query: 117 KQS---LKVREH--NVLGPYVDGLSQLAVTSFQ 144
K ++R V + V+ +
Sbjct: 192 KGQGGECEIRRAGPGSEELTVTNARYVPVSCEK 224
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural
genomics, structur Al genomics consortium, SGC; HET:
ADP; 1.85A {Homo sapiens}
Length = 330
Score = 184 bits (469), Expect = 1e-58
Identities = 52/144 (36%), Positives = 78/144 (54%), Gaps = 10/144 (6%)
Query: 2 PPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYT 61
P +F D F P ASQ+ VF + + ++ + G+N CIFAYGQTG+GK+YT
Sbjct: 46 KPVSFELDKVF---SPQ----ASQQDVFQEV-QALVTSCIDGFNVCIFAYGQTGAGKTYT 97
Query: 62 MMGSQDNKGIIPRLCDSLFDLIAKQESSELTYKVEVSYMEIYNEKVHDLLDPKAN-KQSL 120
M G+ +N GI R LF + ++++S+ Y + VS EIYNE + DLL + K +
Sbjct: 98 MEGTAENPGINQRALQLLFSEV-QEKASDWEYTITVSAAEIYNEVLRDLLGKEPQEKLEI 156
Query: 121 KVREHNVLGPYVDGLSQLAVTSFQ 144
++ YV GL++ V S
Sbjct: 157 RLCPDGSGQLYVPGLTEFQVQSVD 180
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein,
microtubinding proteinbule, contractIle protein; HET:
ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9
PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Length = 347
Score = 184 bits (470), Expect = 1e-58
Identities = 47/152 (30%), Positives = 71/152 (46%), Gaps = 18/152 (11%)
Query: 1 KPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSY 60
F FD F D + VF +G ++ ++ GYN CIFAYGQTGSGK++
Sbjct: 49 AQVHEFKFDKIF---DQQ----DTNVDVFKEVG-QLVQSSLDGYNVCIFAYGQTGSGKTF 100
Query: 61 TMMGSQDNKGIIPRLCDSLFDLIAKQESSELTYKVEVSYMEIYNEKVHDLLDPKANKQS- 119
TM+ D GIIP +F+ I K ++ YKV ++EIYNE + DLL N +
Sbjct: 101 TMLNPGD--GIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKED 158
Query: 120 ------LKVREH-NVLGPYVDGLSQLAVTSFQ 144
++R + ++ + S +
Sbjct: 159 TSIGLKHEIRHDQETKTTTITNVTSCKLESEE 190
>3u06_A Protein claret segregational; motor domain, stalk rotation, power
stroke, kinesin-14, MICR binding, NCD, transport,
molecular motor; HET: ADP GOL; 2.35A {Drosophila
melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Length = 412
Score = 185 bits (473), Expect = 2e-58
Identities = 50/143 (34%), Positives = 81/143 (56%), Gaps = 8/143 (5%)
Query: 2 PPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYT 61
+ F+FD F P +SQ +F+ + ++ +A GYN CIFAYGQTGSGK+YT
Sbjct: 104 GQQIFSFDQVF---HPL----SSQSDIFEMV-SPLIQSALDGYNICIFAYGQTGSGKTYT 155
Query: 62 MMGSQDNKGIIPRLCDSLFDLIAKQESSELTYKVEVSYMEIYNEKVHDLLDPKANKQSLK 121
M G ++ G+IPR D LFD I + Y+++ +++EIYNE ++DLL + ++
Sbjct: 156 MDGVPESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIR 215
Query: 122 VREHNVLGPYVDGLSQLAVTSFQ 144
+ ++N YV +++ V
Sbjct: 216 MAKNNKNDIYVSNITEETVLDPN 238
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport
protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Length = 360
Score = 181 bits (461), Expect = 3e-57
Identities = 39/148 (26%), Positives = 63/148 (42%), Gaps = 17/148 (11%)
Query: 3 PKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQ-GYNACIFAYGQTGSGKSYT 61
F D F D V++ + ++ + ++ G FAYGQTGSGK+YT
Sbjct: 49 RHEFIVDKVF---DDT----VDNFTVYENTIKPLIIDLYENGCVCSCFAYGQTGSGKTYT 101
Query: 62 MMGS-----QDNKGIIPRLCDSLFDLIAKQESSELTYKVEVSYMEIYNEKVHDLLDPKAN 116
M+GS D GI +F + + + T + +S+ EIY K++DLL +
Sbjct: 102 MLGSQPYGQSDTPGIFQYAAGDIFTFLNIYD-KDNTKGIFISFYEIYCGKLYDLLQKRKM 160
Query: 117 KQSLKVREHNVLGPYVDGLSQLAVTSFQ 144
+ E+ V L L V + +
Sbjct: 161 ---VAALENGKKEVVVKDLKILRVLTKE 185
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor
homology domain, karyog mitosis, microtubules; HET: ADP
EBC; 2.30A {Saccharomyces cerevisiae}
Length = 403
Score = 177 bits (452), Expect = 2e-55
Identities = 45/152 (29%), Positives = 70/152 (46%), Gaps = 18/152 (11%)
Query: 1 KPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSY 60
F FD F D + VF + ++ ++ GYN IFAYGQTGSGK++
Sbjct: 105 AQVHEFKFDKIF---DQQ----DTNVDVFKEV-GQLVQSSLDGYNVAIFAYGQTGSGKTF 156
Query: 61 TMMGSQDNKGIIPRLCDSLFDLIAKQESSELTYKVEVSYMEIYNEKVHDLLDPKANKQS- 119
TM+ D GIIP +F+ I K ++ YKV ++EIYNE + DLL N +
Sbjct: 157 TMLNPGD--GIIPSTISHIFNWINKLKTKGWDYKVNAEFIEIYNENIVDLLRSDNNNKED 214
Query: 120 ------LKVREHN-VLGPYVDGLSQLAVTSFQ 144
++R + ++ + + S +
Sbjct: 215 TSIGLKHEIRHDQETKTTTITNVTSVKLESEE 246
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.9 bits (90), Expect = 3e-04
Identities = 26/160 (16%), Positives = 43/160 (26%), Gaps = 53/160 (33%)
Query: 10 HCF-YSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACI--------------FAYGQT 54
H L + K +++ N A I F
Sbjct: 102 HALAAKLLQENDTTLVKTK-------ELIKNY---ITARIMAKRPFDKKSNSALFRAVGE 151
Query: 55 GSGKSYTMMGSQDNKGIIPRLCDSLFDLIAKQESSEL--TYKVEVSYMEIYNEKVHDLLD 112
G+ + + G Q G D F+ EL Y + Y+ V DL+
Sbjct: 152 GNAQLVAIFGGQ---GNT----DDYFE--------ELRDLY-------QTYHVLVGDLIK 189
Query: 113 PKANK-QSLKVREHNVLGPYVDGLSQLAVTSFQARANPTP 151
A L + + GL+ + + + TP
Sbjct: 190 FSAETLSELIRTTLDAEKVFTQGLN---ILEWLENPSNTP 226
Score = 27.3 bits (60), Expect = 2.6
Identities = 28/158 (17%), Positives = 44/158 (27%), Gaps = 66/158 (41%)
Query: 28 VFDAL---GRDILDNAFQG-----YNA--CI-------------FAYGQT--------GS 56
F+ L G D F G Y A + F G T
Sbjct: 1743 AFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDEL 1802
Query: 57 GKS-YTMMGSQDNKGIIPRLCDSLFDLIAKQESSELTYKVEVSYMEI--YN--------- 104
G+S Y M+ + + + ++ + V EI YN
Sbjct: 1803 GRSNYGMIAINPGR-VAASFSQEALQYVVERVGKRTGWLV-----EIVNYNVENQQYVAA 1856
Query: 105 ------EKVHDLLDP-KANK-------QSL---KVREH 125
+ V ++L+ K K +SL +V H
Sbjct: 1857 GDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEVEGH 1894
Score = 27.3 bits (60), Expect = 2.8
Identities = 16/90 (17%), Positives = 29/90 (32%), Gaps = 28/90 (31%)
Query: 1 KPPKTFAFDHCFYSLDPNLPNFA---SQ--EKVFDALGRDILDNAFQGYNAC-----IFA 50
K F + F LP + S D + +D++ N +NA ++
Sbjct: 413 KL----KFSNRF------LPVASPFHSHLLVPASDLINKDLVKNNVS-FNAKDIQIPVYD 461
Query: 51 YGQTGSGKSYTMMGSQDNKGIIPRLCDSLF 80
T G + + I R+ D +
Sbjct: 462 ---TFDGS--DLRVLSGS--ISERIVDCII 484
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.5 bits (86), Expect = 9e-04
Identities = 20/152 (13%), Positives = 50/152 (32%), Gaps = 36/152 (23%)
Query: 20 PNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSY-TMMGSQDNKGIIPRLCDS 78
S+ + + L R L N + G GSGK++ + K + ++
Sbjct: 128 KYNVSRLQPYLKL-RQALLELRPAKN--VLIDGVLGSGKTWVALDVCLSYK-VQCKMDFK 183
Query: 79 LF-----------DLIAKQESSELTYKVEVSY-------------MEIYNEKVHDLLDPK 114
+F ++ + L Y+++ ++ + ++ LL K
Sbjct: 184 IFWLNLKNCNSPETVLEMLQK--LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK 241
Query: 115 ANKQSL----KVREHNVLGPYVDGLSQLAVTS 142
+ L V+ + + ++ +T+
Sbjct: 242 PYENCLLVLLNVQNAKAWNAF-NLSCKILLTT 272
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.7 bits (68), Expect = 0.11
Identities = 9/27 (33%), Positives = 13/27 (48%), Gaps = 2/27 (7%)
Query: 117 KQSLKVREHNVLGPYV-DGLSQLAVTS 142
KQ+LK + L Y D LA+ +
Sbjct: 19 KQALKKLQ-ASLKLYADDSAPALAIKA 44
>2gjx_A Beta-hexosaminidase alpha chain; beta-hexosaminidase A,
glycosidase, TAY-sachs disease, GM2 ganglisode, TIM
barrel, hydrolase; HET: NAG BMA NDG; 2.80A {Homo
sapiens} SCOP: c.1.8.6 d.92.2.1 PDB: 2gk1_A*
Length = 507
Score = 30.9 bits (70), Expect = 0.13
Identities = 20/96 (20%), Positives = 33/96 (34%), Gaps = 1/96 (1%)
Query: 3 PKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYTM 62
P+ F Y L PN F G +LD AFQ Y +F G
Sbjct: 5 PQNFQTSDQRYVLYPNNFQFQYDVSSAAQPGCSVLDEAFQRYRDLLFGSGSWPRPYLTGK 64
Query: 63 MGSQDNKGIIPRLCDSLFDLIAKQESSELTYKVEVS 98
+ + ++ + + + ES E Y + ++
Sbjct: 65 RHTLEKNVLVVSVVTPGCNQLPTLESVE-NYTLTIN 99
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P;
hydrolase, type IV secretion, conjugation; 2.35A
{Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Length = 392
Score = 30.7 bits (69), Expect = 0.16
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 35 DILDNAFQGYNACIFAYGQTGSGKSYTMM 63
DI N+ + G+GKS+T
Sbjct: 25 DIWKRGGDRTNSNWTILAKPGAGKSFTAK 53
>1now_A Beta-hexosaminidase beta chain; (beta/alpha)8-barrel, homodimer,
family 20 glycosidase, HYDR; HET: NAG IFG; 2.20A {Homo
sapiens} SCOP: c.1.8.6 d.92.2.1 PDB: 1nou_A* 1np0_A*
2gjx_B* 3lmy_A* 1o7a_A* 2gk1_B*
Length = 507
Score = 30.5 bits (69), Expect = 0.19
Identities = 16/96 (16%), Positives = 31/96 (32%), Gaps = 1/96 (1%)
Query: 3 PKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYTM 62
P + L P + +L+ AF+ Y+ IF + + +
Sbjct: 11 PLSVKMTPNLLHLAPENFYISHSPNSTAGPSCTLLEEAFRRYHGYIFGFYKWHHEPAEFQ 70
Query: 63 MGSQDNKGIIPRLCDSLFDLIAKQESSELTYKVEVS 98
+Q + ++ S D S E +Y + V
Sbjct: 71 AKTQVQQLLVSITLQSECDAFPNISSDE-SYTLLVK 105
>2qgz_A Helicase loader, putative primosome component; structural genomics,
PSI-2, protein structure initiative; 2.40A
{Streptococcus pyogenes serotype M3}
Length = 308
Score = 29.8 bits (67), Expect = 0.29
Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 20 PNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYTMMG 64
N AS+ + F A+ D ++ ++ YG G GKSY +
Sbjct: 128 VNNASRMEAFSAI-LDFVEQYPSAEQKGLYLYGDMGIGKSYLLAA 171
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR
complex, HMR, HML, TELO AAA+ domain, structural,
nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Length = 318
Score = 29.5 bits (65), Expect = 0.39
Identities = 14/90 (15%), Positives = 26/90 (28%), Gaps = 11/90 (12%)
Query: 17 PNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYTMMGSQDNKGIIPRLC 76
SQ + F + I D+ N + S K + +
Sbjct: 17 QKRELLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVN----------DVM 66
Query: 77 DSLFDLIAKQESSELTYKVEVSYMEIYNEK 106
D L A++E Y + + +E+
Sbjct: 67 DELITSSARKELPIFDY-IHIDALELAGMD 95
>3ec2_A DNA replication protein DNAC; helicase loader, replication
initiation factor, ATP-binding, nucleotide-binding;
HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Length = 180
Score = 28.5 bits (64), Expect = 0.63
Identities = 11/57 (19%), Positives = 21/57 (36%), Gaps = 3/57 (5%)
Query: 8 FDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYTMMG 64
+ + +LD P SQ + + R + N + G G GK++ +
Sbjct: 4 YWNA--NLDTYHPKNVSQNRALLTI-RVFVHNFNPEEGKGLTFVGSPGVGKTHLAVA 57
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural
genomics, APC84050.2, PS protein structure initiative;
HET: MSE; 1.82A {Neisseria meningitidis MC58}
Length = 199
Score = 28.1 bits (62), Expect = 0.90
Identities = 9/31 (29%), Positives = 12/31 (38%), Gaps = 1/31 (3%)
Query: 46 ACIFAY-GQTGSGKSYTMMGSQDNKGIIPRL 75
A I G GSGK+ M+ N +
Sbjct: 5 AEICLITGTPGSGKTLKMVSMMANDEMFKPD 35
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3;
winged-helix domain, helix-turn-helix, AAA+ ATPase
domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A
{Sulfolobus solfataricus}
Length = 384
Score = 28.6 bits (63), Expect = 0.91
Identities = 10/86 (11%), Positives = 26/86 (30%), Gaps = 12/86 (13%)
Query: 26 EKVFDALGRDILDNAFQGYNA-CIFAYGQTGSGKSYTMMGSQDNKGIIPRLCDSLFDLIA 84
E + + + G TG+GK++ + + + ++
Sbjct: 26 EDILRDA-AIAIRYFVKNEVKFSNLFLGLTGTGKTFVSK----------YIFNEIEEVKK 74
Query: 85 KQESSELTYKVEVSYMEIYNEKVHDL 110
+ E + + V+ E+ L
Sbjct: 75 EDEEYKDVKQAYVNCREVGGTPQAVL 100
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1;
winged-helix domain, helix-turn-helix, AAA+ ATPase
domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A
{Sulfolobus solfataricus}
Length = 386
Score = 28.1 bits (62), Expect = 1.2
Identities = 9/37 (24%), Positives = 15/37 (40%)
Query: 26 EKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYTM 62
E + + + IF YG TG+GK+ +
Sbjct: 26 EDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVV 62
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system,
helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP;
2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Length = 1038
Score = 28.3 bits (63), Expect = 1.2
Identities = 6/10 (60%), Positives = 7/10 (70%)
Query: 54 TGSGKSYTMM 63
TGSGK+ T
Sbjct: 309 TGSGKTLTSF 318
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA
replication initation factor, cell cycle control
factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP:
a.4.5.11 c.37.1.20
Length = 389
Score = 28.2 bits (62), Expect = 1.2
Identities = 9/41 (21%), Positives = 16/41 (39%), Gaps = 4/41 (9%)
Query: 26 EKVFDALGRDILDNAFQGYNA---CIFAYGQTGSGKSYTMM 63
E+ L +L N + G+ G+GK+ T+
Sbjct: 23 EQQLQQL-DILLGNWLRNPGHHYPRATLLGRPGTGKTVTLR 62
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A
{Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Length = 287
Score = 27.7 bits (60), Expect = 1.6
Identities = 15/56 (26%), Positives = 22/56 (39%), Gaps = 7/56 (12%)
Query: 18 NLPNFASQEKVFDALGRDILDNAFQGYNA-----CIFAYGQTGSGKSYTMMGSQDN 68
N+ NF ++ F+ D L+ QG A GQ GSGK+ +
Sbjct: 3 NIVNFTDKQ--FENRLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFEE 56
>2w58_A DNAI, primosome component (helicase loader); ATP-binding,
nucleotide-binding, hydrolase; HET: ADP; 2.50A
{Geobacillus kaustophilus HTA426}
Length = 202
Score = 27.3 bits (61), Expect = 1.6
Identities = 8/41 (19%), Positives = 15/41 (36%)
Query: 20 PNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSY 60
N + K R + + ++ +G G GK+Y
Sbjct: 29 LNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTY 69
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase,
hypertherm protein, replication; HET: DNA BOG; 1.50A
{Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB:
1d2m_A*
Length = 664
Score = 27.5 bits (62), Expect = 2.0
Identities = 7/11 (63%), Positives = 9/11 (81%)
Query: 52 GQTGSGKSYTM 62
G TG+GK+ TM
Sbjct: 35 GATGTGKTVTM 45
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary
complex, hydrolase/DNA complex; HET: ADP; 2.10A
{Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B
1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Length = 661
Score = 27.5 bits (62), Expect = 2.2
Identities = 6/11 (54%), Positives = 10/11 (90%)
Query: 52 GQTGSGKSYTM 62
G TG+GK++T+
Sbjct: 39 GATGTGKTFTV 49
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles,
endocytosis, SELF- assembly, alpha-alpha superhelix;
2.60A {Bos taurus} SCOP: a.118.1.3
Length = 449
Score = 27.2 bits (60), Expect = 2.8
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 77 DSLFDLIAKQESSELTYKVEVSYMEIYNEKVHDLL 111
D+I K + EL Y+ Y+E ++DLL
Sbjct: 316 GQFKDIITKVANVELYYRAIQFYLEFKPLLLNDLL 350
>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein
structure initiative, TB structural genomics consortium,
TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis}
SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*
Length = 456
Score = 27.1 bits (60), Expect = 2.9
Identities = 6/22 (27%), Positives = 11/22 (50%), Gaps = 1/22 (4%)
Query: 32 LGRDI-LDNAFQGYNACIFAYG 52
+G + + Y+A I+A G
Sbjct: 84 VGEHVQPGELSERYDAVIYAVG 105
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase,
HEL helix motif, transcription regulator; 3.20A
{Streptococcus pneumoniae}
Length = 253
Score = 26.4 bits (57), Expect = 3.7
Identities = 9/40 (22%), Positives = 16/40 (40%), Gaps = 5/40 (12%)
Query: 26 EKVFDALGRDILDNAFQGYNA-----CIFAYGQTGSGKSY 60
+ F L + +G + I GQ+G+GK+
Sbjct: 8 DSEFKHALARNLRSLTRGKKSSKQPIAILLGGQSGAGKTT 47
>2v1u_A Cell division control protein 6 homolog; DNA replication,
nucleotide-binding, replication, archaea; HET: ADP;
3.10A {Aeropyrum pernix}
Length = 387
Score = 26.3 bits (57), Expect = 4.5
Identities = 8/37 (21%), Positives = 12/37 (32%)
Query: 26 EKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYTM 62
E L + + YG TG+GK+
Sbjct: 25 EAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVA 61
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion
ATPase, ATP-binding, FIMB nucleotide-binding, transport;
HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB:
3jvu_A*
Length = 356
Score = 26.0 bits (58), Expect = 5.1
Identities = 8/11 (72%), Positives = 9/11 (81%)
Query: 52 GQTGSGKSYTM 62
G TGSGKS T+
Sbjct: 130 GPTGSGKSTTL 140
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase,
hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex
aeolicus} PDB: 2eww_A* 2gsz_A*
Length = 372
Score = 26.0 bits (58), Expect = 5.2
Identities = 8/11 (72%), Positives = 9/11 (81%)
Query: 52 GQTGSGKSYTM 62
G TGSGKS T+
Sbjct: 143 GPTGSGKSTTI 153
>3qsl_A Putative exported protein; unknown, structural genomics,
PSI-biology, midwest center FO structural genomics,
MCSG, unknown function; HET: MSE CIT; 2.00A {Bordetella
bronchiseptica}
Length = 346
Score = 26.0 bits (57), Expect = 5.7
Identities = 7/39 (17%), Positives = 14/39 (35%)
Query: 15 LDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQ 53
LD ++ +FA K A+ D + + +
Sbjct: 64 LDVSIADFAGGSKALQAVVGGSADVVSGAFEHTLSLQAK 102
>3bos_A Putative DNA replication factor; P-loop containing nucleoside
triphosphate hydrolases, struct genomics; HET: MSE CDP;
1.75A {Shewanella amazonensis} PDB: 3sc3_A
Length = 242
Score = 25.6 bits (57), Expect = 6.3
Identities = 5/21 (23%), Positives = 11/21 (52%), Gaps = 1/21 (4%)
Query: 42 QGYNACIFAYGQTGSGKSYTM 62
G I+ +G SG+++ +
Sbjct: 50 DGVQ-AIYLWGPVKSGRTHLI 69
>2eyu_A Twitching motility protein PILT; pilus retraction motor,
C-terminal domain PILT, protein transport; 1.87A
{Aquifex aeolicus}
Length = 261
Score = 25.6 bits (57), Expect = 7.0
Identities = 8/11 (72%), Positives = 9/11 (81%)
Query: 52 GQTGSGKSYTM 62
G TGSGKS T+
Sbjct: 32 GPTGSGKSTTI 42
>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A
{Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB:
1q2v_A* 1q3s_A* 1q3r_A
Length = 548
Score = 25.6 bits (57), Expect = 8.5
Identities = 12/61 (19%), Positives = 28/61 (45%), Gaps = 10/61 (16%)
Query: 71 IIPR-LC--------DSLFDLIAKQESSELTYKVEVSYMEIYNEKVHDLLDPKANK-QSL 120
IIP+ L + L +I++ ++ L ++V + + +++P K Q++
Sbjct: 446 IIPKTLAENAGLDTVEMLVKVISEHKNRGLGIGIDVFEGKPADMLEKGIIEPLRVKKQAI 505
Query: 121 K 121
K
Sbjct: 506 K 506
>2wz1_A Guanylate cyclase soluble subunit beta-1; lyase, GUCY1,
metal-binding, CGMP biosynthesis, nucleotide-B cyclase,
GUCY1B3, GTP-binding; 1.63A {Homo sapiens} PDB: 3uvj_B
Length = 219
Score = 25.4 bits (56), Expect = 8.6
Identities = 8/26 (30%), Positives = 11/26 (42%), Gaps = 3/26 (11%)
Query: 78 SLFDLIAKQESSELTYKVEV---SYM 100
+ FD + + YKVE YM
Sbjct: 48 TRFDTLTDSRKNPFVYKVETVGDKYM 73
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter,
transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Length = 587
Score = 25.6 bits (57), Expect = 9.5
Identities = 14/26 (53%), Positives = 17/26 (65%), Gaps = 7/26 (26%)
Query: 52 GQTGSGKSYTMMGSQDNKGIIPRLCD 77
G+TGSGKS T+M +IPRL D
Sbjct: 376 GETGSGKS-TLM------NLIPRLID 394
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.135 0.398
Gapped
Lambda K H
0.267 0.0757 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,221,580
Number of extensions: 116648
Number of successful extensions: 382
Number of sequences better than 10.0: 1
Number of HSP's gapped: 299
Number of HSP's successfully gapped: 64
Length of query: 151
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 66
Effective length of database: 4,328,508
Effective search space: 285681528
Effective search space used: 285681528
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.1 bits)