RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12524
(151 letters)
>d2zfia1 c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), kif1a
[TaxId: 10090]}
Length = 349
Score = 105 bits (263), Expect = 1e-28
Identities = 82/147 (55%), Positives = 113/147 (76%), Gaps = 4/147 (2%)
Query: 1 KPPKTFAFDHCFYSLD-PNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKS 59
+ PK+F+FD+ ++S P N+ASQ++V+ +G ++L +AF+GYN CIFAYGQTG+GKS
Sbjct: 42 ETPKSFSFDYSYWSHTSPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKS 101
Query: 60 YTMMGSQD--NKGIIPRLCDSLFDLIAKQESSELTYKVEVSYMEIYNEKVHDLLDPKANK 117
YTMMG Q+ +GIIP+LC+ LF I + ++Y VEVSYMEIY E+V DLL+PK NK
Sbjct: 102 YTMMGKQEKDQQGIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPK-NK 160
Query: 118 QSLKVREHNVLGPYVDGLSQLAVTSFQ 144
+L+VREH +LGPYV+ LS+LAVTS+
Sbjct: 161 GNLRVREHPLLGPYVEDLSKLAVTSYN 187
>d1x88a1 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), mitotic
kinesin eg5 [TaxId: 9606]}
Length = 345
Score = 103 bits (256), Expect = 9e-28
Identities = 49/157 (31%), Positives = 76/157 (48%), Gaps = 24/157 (15%)
Query: 2 PPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYT 61
KT+ FD F + Q V+ ++ ILD GYN IFAYGQTG+GK++T
Sbjct: 45 SRKTYTFDMVF---GAS----TKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFT 97
Query: 62 MMGSQDN-----------KGIIPRLCDSLFDLIAKQESSELTYKVEVSYMEIYNEKVHDL 110
M G + GIIPR +F+ + + + V+VS +EIYNE++ DL
Sbjct: 98 MEGERSPNEEYTWEEDPLAGIIPRTLHQIFEKLTDNGTE---FSVKVSLLEIYNEELFDL 154
Query: 111 LDPKAN---KQSLKVREHNVLGPYVDGLSQLAVTSFQ 144
L+P ++ + + N G + GL ++ V +
Sbjct: 155 LNPSSDVSERLQMFDDPRNKRGVIIKGLEEITVHNKD 191
>d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId: 9606]}
Length = 323
Score = 101 bits (251), Expect = 4e-27
Identities = 54/142 (38%), Positives = 79/142 (55%), Gaps = 13/142 (9%)
Query: 2 PPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYT 61
K +AFD F + SQE+V++ + I+ + +GYN IFAYGQT SGK++T
Sbjct: 40 ASKPYAFDRVF---QSS----TSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHT 92
Query: 62 MMGSQ---DNKGIIPRLCDSLFDLIAKQESSELTYKVEVSYMEIYNEKVHDLLDPKANKQ 118
M G + GIIPR+ +F+ I + L + ++VSY EIY +K+ DLLD +K
Sbjct: 93 MEGKLHDPEGMGIIPRIVQDIFNYIYSMD-ENLEFHIKVSYFEIYLDKIRDLLDV--SKT 149
Query: 119 SLKVREHNVLGPYVDGLSQLAV 140
+L V E PYV G ++ V
Sbjct: 150 NLSVHEDKNRVPYVKGCTERFV 171
>d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]}
Length = 354
Score = 95.0 bits (235), Expect = 1e-24
Identities = 55/141 (39%), Positives = 75/141 (53%), Gaps = 14/141 (9%)
Query: 1 KPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSY 60
+ +F FD F D + Q +FD + +D+ GYN +FAYGQTG+GKSY
Sbjct: 43 EAQGSFTFDRVF---DMS----CKQSDIFDFSIKPTVDDILNGYNGTVFAYGQTGAGKSY 95
Query: 61 TMM----GSQDNKGIIPRLCDSLFDLIAKQESSELTYKVEVSYMEIYNEKVHDLLDPKAN 116
TMM D +G+IPR+ + +F I + + Y V VSYMEIY E++ DLL P
Sbjct: 96 TMMGTSIDDPDGRGVIPRIVEQIFTSILSSA-ANIEYTVRVSYMEIYMERIRDLLAP--Q 152
Query: 117 KQSLKVREHNVLGPYVDGLSQ 137
+L V E G YV GL +
Sbjct: 153 NDNLPVHEEKNRGVYVKGLLE 173
>d1ry6a_ c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodium
falciparum) [TaxId: 5833]}
Length = 330
Score = 88.9 bits (219), Expect = 1e-22
Identities = 34/130 (26%), Positives = 55/130 (42%), Gaps = 14/130 (10%)
Query: 3 PKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAF-QGYNACIFAYGQTGSGKSYT 61
F D F D V++ + ++ + + G FAYGQTGSGK+YT
Sbjct: 49 RHEFIVDKVF---DDT----VDNFTVYENTIKPLIIDLYENGCVCSCFAYGQTGSGKTYT 101
Query: 62 MM-----GSQDNKGIIPRLCDSLFDLIAKQESSELTYKVEVSYMEIYNEKVHDLLDPKAN 116
M+ G D GI +F + + T + +S+ EIY K++DLL +
Sbjct: 102 MLGSQPYGQSDTPGIFQYAAGDIFTFLNIYDKDN-TKGIFISFYEIYCGKLYDLLQKRKM 160
Query: 117 KQSLKVREHN 126
+L+ +
Sbjct: 161 VAALENGKKE 170
>d1v8ka_ c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c [TaxId:
10090]}
Length = 362
Score = 88.4 bits (218), Expect = 3e-22
Identities = 52/148 (35%), Positives = 69/148 (46%), Gaps = 16/148 (10%)
Query: 3 PKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYTM 62
+ F FD F D AS E V+ R ++ F+G A FAYGQTGSGK++TM
Sbjct: 79 NQAFCFDFAF---DET----ASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTM 131
Query: 63 M------GSQDNKGIIPRLCDSLFDLIAKQESSELTYKVEVSYMEIYNEKVHDLLDPKAN 116
+KGI +F L + L +V V++ EIYN KV DLL+ KA
Sbjct: 132 GGDLSGKSQNASKGIYAMASRDVFLLKNQPRYRNLNLEVYVTFFEIYNGKVFDLLNKKAK 191
Query: 117 KQSLKVREHNVLGPYVDGLSQLAVTSFQ 144
L+V E + V GL + VT
Sbjct: 192 ---LRVLEDSRQQVQVVGLQEYLVTCAD 216
>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional)
{Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 368
Score = 87.3 bits (215), Expect = 8e-22
Identities = 46/125 (36%), Positives = 75/125 (60%), Gaps = 8/125 (6%)
Query: 2 PPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYT 61
+ F+FD F+ +SQ +F+ + ++ +A GYN CIFAYGQTGSGK+YT
Sbjct: 90 GQQIFSFDQVFHP-------LSSQSDIFEMVS-PLIQSALDGYNICIFAYGQTGSGKTYT 141
Query: 62 MMGSQDNKGIIPRLCDSLFDLIAKQESSELTYKVEVSYMEIYNEKVHDLLDPKANKQSLK 121
M G ++ G+IPR D LFD I + Y+++ +++EIYNE ++DLL + ++
Sbjct: 142 MDGVPESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIR 201
Query: 122 VREHN 126
+ ++N
Sbjct: 202 MAKNN 206
>d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato
(Solanum tuberosum) [TaxId: 4113]}
Length = 364
Score = 85.8 bits (211), Expect = 3e-21
Identities = 46/144 (31%), Positives = 85/144 (59%), Gaps = 10/144 (6%)
Query: 2 PPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYT 61
K +D F D N A+Q+ VF+ + ++ +A GYN CIFAYGQTGSGK++T
Sbjct: 40 KAKQHMYDRVF---DGN----ATQDDVFEDT-KYLVQSAVDGYNVCIFAYGQTGSGKTFT 91
Query: 62 MMGSQDNKGIIPRLCDSLFDLIAKQESSELTYKVEVSYMEIYNEKVHDLLDPKANK-QSL 120
+ G+ N G+ PR LF I K++S++ ++ ++ +E+Y + + DLL PK K L
Sbjct: 92 IYGADSNPGLTPRAMSELFR-IMKKDSNKFSFSLKAYMVELYQDTLVDLLLPKQAKRLKL 150
Query: 121 KVREHNVLGPYVDGLSQLAVTSFQ 144
+++ + V+ ++ +++++++
Sbjct: 151 DIKKDSKGMVSVENVTVVSISTYE 174
>d1f9va_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional)
{Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId:
4932]}
Length = 342
Score = 83.1 bits (204), Expect = 2e-20
Identities = 45/152 (29%), Positives = 69/152 (45%), Gaps = 18/152 (11%)
Query: 1 KPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSY 60
F FD F D + VF +G+ ++ ++ GYN CIFAYGQTGSGK++
Sbjct: 47 AQVHEFKFDKIF---DQQ----DTNVDVFKEVGQ-LVQSSLDGYNVCIFAYGQTGSGKTF 98
Query: 61 TMMGSQDNKGIIPRLCDSLFDLIAKQESSELTYKVEVSYMEIYNEKVHDLLDPKANKQSL 120
TM+ GIIP +F+ I K ++ YKV ++EIYNE + DLL N +
Sbjct: 99 TML--NPGDGIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKED 156
Query: 121 K--------VREHNVLGPYVDGLSQLAVTSFQ 144
+ + ++ + S +
Sbjct: 157 TSIGLKHEIRHDQETKTTTITNVTSCKLESEE 188
>d2gjxa2 d.92.2.1 (A:23-166) beta-hexosaminidase A {Human (Homo
sapiens) [TaxId: 9606]}
Length = 144
Score = 29.5 bits (65), Expect = 0.098
Identities = 20/96 (20%), Positives = 33/96 (34%), Gaps = 1/96 (1%)
Query: 3 PKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYTM 62
P+ F Y L PN F G +LD AFQ Y +F G
Sbjct: 5 PQNFQTSDQRYVLYPNNFQFQYDVSSAAQPGCSVLDEAFQRYRDLLFGSGSWPRPYLTGK 64
Query: 63 MGSQDNKGIIPRLCDSLFDLIAKQESSELTYKVEVS 98
+ + ++ + + + ES E Y + ++
Sbjct: 65 RHTLEKNVLVVSVVTPGCNQLPTLESVE-NYTLTIN 99
>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB
{Escherichia coli [TaxId: 562]}
Length = 433
Score = 28.7 bits (63), Expect = 0.25
Identities = 8/64 (12%), Positives = 22/64 (34%), Gaps = 9/64 (14%)
Query: 48 IFAYGQTGSGKSYTMMGSQDNKGIIPRLC---DSLFDLIAKQESSELTYKVEVSYMEIYN 104
+ G TG+GKS + + + D + + + + + + Y+
Sbjct: 53 LLVNGATGTGKSVLL------RELAYTGLLRGDRMVIVDPNGDMLSKFGRDKDIILNPYD 106
Query: 105 EKVH 108
++
Sbjct: 107 QRTK 110
>d1nowa2 d.92.2.1 (A:55-199) beta-hexosaminidase B, N-terminal
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 145
Score = 27.6 bits (60), Expect = 0.47
Identities = 16/96 (16%), Positives = 31/96 (32%), Gaps = 1/96 (1%)
Query: 3 PKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYTM 62
P + L P + +L+ AF+ Y+ IF + + +
Sbjct: 6 PLSVKMTPNLLHLAPENFYISHSPNSTAGPSCTLLEEAFRRYHGYIFGFYKWHHEPAEFQ 65
Query: 63 MGSQDNKGIIPRLCDSLFDLIAKQESSELTYKVEVS 98
+Q + ++ S D S E +Y + V
Sbjct: 66 AKTQVQQLLVSITLQSECDAFPNISSDE-SYTLLVK 100
>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment
{Cow (Bos taurus) [TaxId: 9913]}
Length = 336
Score = 27.1 bits (60), Expect = 1.0
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 77 DSLFDLIAKQESSELTYKVEVSYMEIYNEKVHDLL 111
D+I K + EL Y+ Y+E ++DLL
Sbjct: 208 GQFKDIITKVANVELYYRAIQFYLEFKPLLLNDLL 242
>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus
influenzae [TaxId: 727]}
Length = 158
Score = 26.2 bits (57), Expect = 1.3
Identities = 13/98 (13%), Positives = 30/98 (30%), Gaps = 7/98 (7%)
Query: 18 NLPNFASQEKVFDALGRDI---LDNAFQGYNACIFAYGQTGSGKSYTMMGSQDNKGIIPR 74
+L + E G+ L ++ G G+GK+ G G
Sbjct: 3 SLTQYIPDEFSMLRFGKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGIGHQGN 62
Query: 75 LCDSLFDLIAKQESSELTYKVEVSYMEIYNEKVHDLLD 112
+ + L+ + + + ++Y + L+
Sbjct: 63 VKSPTYTLVEEYN----IAGKMIYHFDLYRLADPEELE 96
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta,
toxin zeta subunit {Streptococcus pyogenes [TaxId:
1314]}
Length = 273
Score = 25.3 bits (54), Expect = 3.3
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 7/49 (14%)
Query: 18 NLPNFASQEKVFDALGRDILDNAFQGYNA-----CIFAYGQTGSGKSYT 61
N+ NF + ++ + L D L+ QG A GQ GSGK+
Sbjct: 2 NIVNF-TDKQFENRL-NDNLEELIQGKKAVESPTAFLLGGQPGSGKTSL 48
>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken
(Gallus gallus), Va isoform [TaxId: 9031]}
Length = 730
Score = 25.5 bits (55), Expect = 3.7
Identities = 7/32 (21%), Positives = 16/32 (50%), Gaps = 5/32 (15%)
Query: 36 ILDNAFQ-----GYNACIFAYGQTGSGKSYTM 62
+ + A++ N I G++G+GK+ +
Sbjct: 80 VAEEAYKQMARDERNQSIIVSGESGAGKTVSA 111
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 189
Score = 25.0 bits (53), Expect = 3.9
Identities = 5/17 (29%), Positives = 8/17 (47%)
Query: 47 CIFAYGQTGSGKSYTMM 63
+F G G GK+ +
Sbjct: 3 HVFLTGPPGVGKTTLIH 19
>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken
(Gallus gallus), pectoral muscle [TaxId: 9031]}
Length = 794
Score = 25.1 bits (54), Expect = 5.3
Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 5/31 (16%)
Query: 36 ILDNAFQ-----GYNACIFAYGQTGSGKSYT 61
I DNA+Q N I G++G+GK+
Sbjct: 109 ISDNAYQFMLTDRENQSILITGESGAGKTVN 139
>d1rsob_ a.194.1.1 (B:) Peripheral plasma membrane protein cask {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 56
Score = 22.8 bits (49), Expect = 6.3
Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 69 KGIIPRLCDSLFDLIAKQESSELTYKVEVSYMEIYNEKVHDLLD 112
+ + ++ DSL ++ A +SSE S + ++ +H LLD
Sbjct: 6 ERAVSQVLDSLEEIHALTDSSEKDLDFLHSVFQ--DQHLHTLLD 47
>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium
discoideum, class-I myosin MyoE [TaxId: 44689]}
Length = 684
Score = 24.7 bits (53), Expect = 6.7
Identities = 7/32 (21%), Positives = 17/32 (53%), Gaps = 5/32 (15%)
Query: 36 ILDNAFQ-----GYNACIFAYGQTGSGKSYTM 62
+ ++A++ N C+ G++G+GK+
Sbjct: 72 LANDAYRSMRQSQENQCVIISGESGAGKTEAS 103
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.135 0.398
Gapped
Lambda K H
0.267 0.0433 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 537,996
Number of extensions: 22066
Number of successful extensions: 102
Number of sequences better than 10.0: 1
Number of HSP's gapped: 85
Number of HSP's successfully gapped: 25
Length of query: 151
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 73
Effective length of database: 1,336,656
Effective search space: 97575888
Effective search space used: 97575888
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.4 bits)