BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12526
(103 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3GBJ|A Chain A, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|B Chain B, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|C Chain C, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
Length = 354
Score = 84.0 bits (206), Expect = 2e-17, Method: Composition-based stats.
Identities = 37/68 (54%), Positives = 47/68 (69%), Gaps = 1/68 (1%)
Query: 35 PKTFAFDHCFYSLDPNLP-NFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYL 93
PK FA+DHCF+S+D ++ +A Q+ VF LG +IL NAF GYNACIFAYGQTG +Y
Sbjct: 50 PKVFAYDHCFWSMDESVKEKYAGQDIVFKCLGENILQNAFDGYNACIFAYGQTGSGKSYT 109
Query: 94 LNGNGPFP 101
+ G P
Sbjct: 110 MMGTADQP 117
>pdb|1I6I|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppcp
Length = 366
Score = 69.7 bits (169), Expect = 4e-13, Method: Composition-based stats.
Identities = 30/63 (47%), Positives = 46/63 (73%), Gaps = 1/63 (1%)
Query: 35 PKTFAFDHCFYS-LDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYL 93
PK+F+FD+ ++S P N+ASQ++V+ +G ++L +AF+GYN CIFAYGQTG +Y
Sbjct: 47 PKSFSFDYSYWSHTSPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYT 106
Query: 94 LNG 96
+ G
Sbjct: 107 MMG 109
>pdb|1IA0|K Chain K, Kif1a Head-Microtubule Complex Structure In Atp-Form
pdb|2HXF|C Chain C, Kif1a Head-Microtubule Complex Structure In Amppnp-Form
pdb|2HXH|C Chain C, Kif1a Head-Microtubule Complex Structure In Adp-Form
Length = 394
Score = 69.7 bits (169), Expect = 4e-13, Method: Composition-based stats.
Identities = 30/63 (47%), Positives = 46/63 (73%), Gaps = 1/63 (1%)
Query: 35 PKTFAFDHCFYS-LDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYL 93
PK+F+FD+ ++S P N+ASQ++V+ +G ++L +AF+GYN CIFAYGQTG +Y
Sbjct: 63 PKSFSFDYSYWSHTSPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYT 122
Query: 94 LNG 96
+ G
Sbjct: 123 MMG 125
>pdb|1VFV|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFW|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFX|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-mg-alfx
pdb|1VFZ|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-Mg-Vo4
pdb|2ZFI|A Chain A, Crystal Structure Of The Kif1a Motor Domain Before Mg
Release
pdb|2ZFJ|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-1
pdb|2ZFK|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-2
pdb|2ZFL|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-3
pdb|2ZFM|A Chain A, Crystal Structure Of The Kif1a Motor Domain After Mg
Release
Length = 366
Score = 69.3 bits (168), Expect = 5e-13, Method: Composition-based stats.
Identities = 30/63 (47%), Positives = 46/63 (73%), Gaps = 1/63 (1%)
Query: 35 PKTFAFDHCFYS-LDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYL 93
PK+F+FD+ ++S P N+ASQ++V+ +G ++L +AF+GYN CIFAYGQTG +Y
Sbjct: 47 PKSFSFDYSYWSHTSPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYT 106
Query: 94 LNG 96
+ G
Sbjct: 107 MMG 109
>pdb|1I5S|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Adp
Length = 367
Score = 69.3 bits (168), Expect = 5e-13, Method: Composition-based stats.
Identities = 30/63 (47%), Positives = 46/63 (73%), Gaps = 1/63 (1%)
Query: 35 PKTFAFDHCFYS-LDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYL 93
PK+F+FD+ ++S P N+ASQ++V+ +G ++L +AF+GYN CIFAYGQTG +Y
Sbjct: 47 PKSFSFDYSYWSHTSPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYT 106
Query: 94 LNG 96
+ G
Sbjct: 107 MMG 109
>pdb|2OWM|A Chain A, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|B Chain B, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|C Chain C, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|D Chain D, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
Length = 443
Score = 68.2 bits (165), Expect = 1e-12, Method: Composition-based stats.
Identities = 30/66 (45%), Positives = 44/66 (66%)
Query: 36 KTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLN 95
K+F FD F+S + ++A+QE V+D+LG + LD+ F+GY+ CIFAYGQTG +Y +
Sbjct: 96 KSFTFDKSFWSHNTEDEHYATQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTMM 155
Query: 96 GNGPFP 101
G P
Sbjct: 156 GTPDQP 161
>pdb|3B6U|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
pdb|3B6U|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
Length = 372
Score = 49.7 bits (117), Expect = 4e-07, Method: Composition-based stats.
Identities = 29/77 (37%), Positives = 41/77 (53%), Gaps = 8/77 (10%)
Query: 20 QTTYLTGTGRSHLKPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNAC 79
Q + G +H + PKTF FD + D N A Q +++D R ++D+ QG+N
Sbjct: 53 QVSVKNPKGTAH-EMPKTFTFDAVY---DWN----AKQFELYDETFRPLVDSVLQGFNGT 104
Query: 80 IFAYGQTGEKTNYLLNG 96
IFAYGQTG Y + G
Sbjct: 105 IFAYGQTGTGKTYTMEG 121
>pdb|2NCD|A Chain A, Ncd (Non-Claret Disjunctional) Dimer From D. Melanogaster
Length = 420
Score = 48.9 bits (115), Expect = 7e-07, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 8/61 (13%)
Query: 36 KTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLN 95
+ F+FD F+ L +SQ +F+ + ++ +A GYN CIFAYGQTG Y ++
Sbjct: 114 QIFSFDQVFHPL-------SSQSDIFEMVS-PLIQSALDGYNICIFAYGQTGSGKTYTMD 165
Query: 96 G 96
G
Sbjct: 166 G 166
>pdb|1N6M|A Chain A, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
pdb|1N6M|B Chain B, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
Length = 409
Score = 48.9 bits (115), Expect = 8e-07, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 8/61 (13%)
Query: 36 KTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLN 95
+ F+FD F+ L +SQ +F+ + ++ +A GYN CIFAYGQTG Y ++
Sbjct: 103 QIFSFDQVFHPL-------SSQSDIFEMVS-PLIQSALDGYNICIFAYGQTGSGKTYTMD 154
Query: 96 G 96
G
Sbjct: 155 G 155
>pdb|3U06|A Chain A, Crystal Structure Of The Kinesin-14 Ncdg347d
pdb|3U06|B Chain B, Crystal Structure Of The Kinesin-14 Ncdg347d
Length = 412
Score = 48.9 bits (115), Expect = 8e-07, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 8/61 (13%)
Query: 36 KTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLN 95
+ F+FD F+ L +SQ +F+ + ++ +A GYN CIFAYGQTG Y ++
Sbjct: 106 QIFSFDQVFHPL-------SSQSDIFEMVS-PLIQSALDGYNICIFAYGQTGSGKTYTMD 157
Query: 96 G 96
G
Sbjct: 158 G 158
>pdb|1CZ7|A Chain A, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|B Chain B, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|C Chain C, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|D Chain D, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
Length = 406
Score = 48.9 bits (115), Expect = 8e-07, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 8/61 (13%)
Query: 36 KTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLN 95
+ F+FD F+ L +SQ +F+ + ++ +A GYN CIFAYGQTG Y ++
Sbjct: 100 QIFSFDQVFHPL-------SSQSDIFEMVS-PLIQSALDGYNICIFAYGQTGSGKTYTMD 151
Query: 96 G 96
G
Sbjct: 152 G 152
>pdb|4ATX|C Chain C, Rigor Kinesin Motor Domain With An Ordered Neck-Linker,
Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em
Map Of Doublecortin-Microtubules Decorated With Kinesin
Length = 340
Score = 48.1 bits (113), Expect = 1e-06, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 7/61 (11%)
Query: 36 KTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLN 95
K +AFD F S SQE+V++ + I+ + +GYN IFAYGQT N+ +
Sbjct: 44 KPYAFDRVFQS-------STSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKNHTME 96
Query: 96 G 96
G
Sbjct: 97 G 97
>pdb|3L1C|A Chain A, Kinesin-14 Protein Ncd, T436s Mutant
pdb|3L1C|B Chain B, Kinesin-14 Protein Ncd, T436s Mutant
Length = 383
Score = 47.8 bits (112), Expect = 2e-06, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 8/61 (13%)
Query: 36 KTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLN 95
+ F+FD F+ L +SQ +F+ + ++ +A GYN CIFAYGQ+G Y ++
Sbjct: 103 QIFSFDQVFHPL-------SSQSDIFEMVS-PLIQSALDGYNICIFAYGQSGSGKTYTMD 154
Query: 96 G 96
G
Sbjct: 155 G 155
>pdb|3B6V|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
pdb|3B6V|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
Length = 395
Score = 47.4 bits (111), Expect = 2e-06, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 7/62 (11%)
Query: 35 PKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLL 94
PKTF FD + + + Q ++D R ++D+ QG+N +FAYGQTG Y +
Sbjct: 67 PKTFTFDAVYDA-------SSKQADLYDETVRPLIDSVLQGFNGTVFAYGQTGTGKTYTM 119
Query: 95 NG 96
G
Sbjct: 120 QG 121
>pdb|2Y5W|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y5W|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y65|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|C Chain C, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|D Chain D, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
Length = 365
Score = 47.0 bits (110), Expect = 3e-06, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 32/61 (52%), Gaps = 7/61 (11%)
Query: 36 KTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLN 95
K + FD F PN ASQEKV++ + I+ + GYN IFAYGQT + +
Sbjct: 51 KVYLFDKVF---KPN----ASQEKVYNEAAKSIVTDVLAGYNGTIFAYGQTSSGKTHTME 103
Query: 96 G 96
G
Sbjct: 104 G 104
>pdb|1T5C|A Chain A, Crystal Structure Of The Motor Domain Of Human
Kinetochore Protein Cenp-E
pdb|1T5C|B Chain B, Crystal Structure Of The Motor Domain Of Human
Kinetochore Protein Cenp-E
Length = 349
Score = 47.0 bits (110), Expect = 3e-06, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 7/62 (11%)
Query: 36 KTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLN 95
K+F FD F+ + + + V++ + I+D+A QGYN IFAYGQT Y +
Sbjct: 44 KSFNFDRVFHGNE-------TTKNVYEEIAAPIIDSAIQGYNGTIFAYGQTASGKTYTMM 96
Query: 96 GN 97
G+
Sbjct: 97 GS 98
>pdb|4AQV|C Chain C, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian
Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom
Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain
In The Ampppnp State.
pdb|4AQW|C Chain C, Model Of Human Kinesin-5 Motor Domain (1ii6, 3hqd) And
Mammalian Tubulin Heterodimer (1jff) Docked Into The
9.5- Angstrom Cryo-em Map Of Microtubule-bound Kinesin-5
Motor Domain In The Rigor State
Length = 373
Score = 46.6 bits (109), Expect = 3e-06, Method: Composition-based stats.
Identities = 29/80 (36%), Positives = 39/80 (48%), Gaps = 8/80 (10%)
Query: 17 VRKQTTYLTGTGRSHLKPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGY 76
VRK+ + TG G + KT+ FD F + Q V+ ++ ILD GY
Sbjct: 46 VRKEVSVRTG-GLADKSSRKTYTFDMVFGA-------STKQIDVYRSVVAPILDEVIMGY 97
Query: 77 NACIFAYGQTGEKTNYLLNG 96
NA IFAYGQTG + + G
Sbjct: 98 NATIFAYGQTGTGKTFTMEG 117
>pdb|2KIN|A Chain A, Kinesin (Monomeric) From Rattus Norvegicus
pdb|3KIN|A Chain A, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|C Chain C, Kinesin (Dimeric) From Rattus Norvegicus
Length = 238
Score = 46.2 bits (108), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 30/52 (57%)
Query: 45 YSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLNG 96
Y D LP +QE+V++A + I+ + +GYN IFAYGQT + + G
Sbjct: 46 YVFDRVLPPNTTQEQVYNACAKQIVKDVLEGYNGTIFAYGQTSSGKTHTMEG 97
>pdb|2VVG|A Chain A, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
pdb|2VVG|B Chain B, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
Length = 350
Score = 45.8 bits (107), Expect = 6e-06, Method: Composition-based stats.
Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 7/69 (10%)
Query: 33 KPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNY 92
K P+TF FD + D N+ +F A + ++D +G+N+ IFAYGQTG +
Sbjct: 53 KVPRTFTFDAVY---DQTSCNYG----IFQASFKPLIDAVLEGFNSTIFAYGQTGAGKTW 105
Query: 93 LLNGNGPFP 101
+ GN P
Sbjct: 106 TMGGNKEEP 114
>pdb|1MKJ|A Chain A, Human Kinesin Motor Domain With Docked Neck Linker
Length = 349
Score = 45.8 bits (107), Expect = 6e-06, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 7/61 (11%)
Query: 36 KTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLN 95
K +AFD F S SQE+V++ + I+ + +GYN IFAYGQT + +
Sbjct: 44 KPYAFDRVFQS-------STSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTME 96
Query: 96 G 96
G
Sbjct: 97 G 97
>pdb|4A14|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 45.4 bits (106), Expect = 7e-06, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 7/69 (10%)
Query: 26 GTGRSHLKPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQ 85
G GR L + F F H + D A QE V+ A + +L+ F+G+NA +FAYGQ
Sbjct: 40 GLGRVTLGRDRHFGF-HVVLAED------AGQEAVYQACVQPLLEAFFEGFNATVFAYGQ 92
Query: 86 TGEKTNYLL 94
TG Y +
Sbjct: 93 TGSGKTYTM 101
>pdb|2XT3|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 45.4 bits (106), Expect = 7e-06, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 7/69 (10%)
Query: 26 GTGRSHLKPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQ 85
G GR L + F F H + D A QE V+ A + +L+ F+G+NA +FAYGQ
Sbjct: 40 GLGRVTLGRDRHFGF-HVVLAED------AGQEAVYQACVQPLLEAFFEGFNATVFAYGQ 92
Query: 86 TGEKTNYLL 94
TG Y +
Sbjct: 93 TGSGKTYTM 101
>pdb|1BG2|A Chain A, Human Ubiquitous Kinesin Motor Domain
pdb|2P4N|K Chain K, Human Monomeric Kinesin (1bg2) And Bovine Tubulin (1jff)
Docked Into The 9-Angstrom Cryo-Em Map Of
Nucleotide-Free Kinesin Complexed To The Microtubule
Length = 325
Score = 45.4 bits (106), Expect = 7e-06, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 7/61 (11%)
Query: 36 KTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLN 95
K +AFD F S SQE+V++ + I+ + +GYN IFAYGQT + +
Sbjct: 44 KPYAFDRVFQS-------STSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTME 96
Query: 96 G 96
G
Sbjct: 97 G 97
>pdb|1F9U|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 45.4 bits (106), Expect = 8e-06, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 43/84 (51%), Gaps = 15/84 (17%)
Query: 20 QTTYLTGTGRSHLKPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNAC 79
+ T + T + H F FD F D N+ VF +G+ ++ ++ GYN C
Sbjct: 41 EVTKIQNTAQVH-----EFKFDKIFDQQDTNV-------DVFKEVGQ-LVQSSLDGYNVC 87
Query: 80 IFAYGQTGE-KTNYLLN-GNGPFP 101
IFAYGQTG KT +LN G+G P
Sbjct: 88 IFAYGQTGSGKTFTMLNPGDGIIP 111
>pdb|1F9T|A Chain A, Crystal Structures Of Kinesin Mutants Reveal A Signalling
Pathway For Activation Of The Motor Atpase
Length = 358
Score = 45.4 bits (106), Expect = 8e-06, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 43/84 (51%), Gaps = 15/84 (17%)
Query: 20 QTTYLTGTGRSHLKPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNAC 79
+ T + T + H F FD F D N+ VF +G+ ++ ++ GYN C
Sbjct: 52 EVTKIQNTAQVH-----EFKFDKIFDQQDTNV-------DVFKEVGQ-LVQSSLDGYNVC 98
Query: 80 IFAYGQTGE-KTNYLLN-GNGPFP 101
IFAYGQTG KT +LN G+G P
Sbjct: 99 IFAYGQTGSGKTFTMLNPGDGIIP 122
>pdb|1F9V|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 45.4 bits (106), Expect = 8e-06, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 43/84 (51%), Gaps = 15/84 (17%)
Query: 20 QTTYLTGTGRSHLKPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNAC 79
+ T + T + H F FD F D N+ VF +G+ ++ ++ GYN C
Sbjct: 41 EVTKIQNTAQVH-----EFKFDKIFDQQDTNV-------DVFKEVGQ-LVQSSLDGYNVC 87
Query: 80 IFAYGQTGE-KTNYLLN-GNGPFP 101
IFAYGQTG KT +LN G+G P
Sbjct: 88 IFAYGQTGSGKTFTMLNPGDGIIP 111
>pdb|3KAR|A Chain A, The Motor Domain Of Kinesin-Like Protein Kar3, A
Saccharomyces Cerevisiae Kinesin-Related Protein
Length = 346
Score = 45.4 bits (106), Expect = 8e-06, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 43/84 (51%), Gaps = 15/84 (17%)
Query: 20 QTTYLTGTGRSHLKPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNAC 79
+ T + T + H F FD F D N+ VF +G+ ++ ++ GYN C
Sbjct: 40 EVTKIQNTAQVH-----EFKFDKIFDQQDTNV-------DVFKEVGQ-LVQSSLDGYNVC 86
Query: 80 IFAYGQTGE-KTNYLLN-GNGPFP 101
IFAYGQTG KT +LN G+G P
Sbjct: 87 IFAYGQTGSGKTFTMLNPGDGIIP 110
>pdb|1F9W|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
pdb|1F9W|B Chain B, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 45.4 bits (106), Expect = 9e-06, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 43/84 (51%), Gaps = 15/84 (17%)
Query: 20 QTTYLTGTGRSHLKPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNAC 79
+ T + T + H F FD F D N+ VF +G+ ++ ++ GYN C
Sbjct: 41 EVTKIQNTAQVH-----EFKFDKIFDQQDTNV-------DVFKEVGQ-LVQSSLDGYNVC 87
Query: 80 IFAYGQTGE-KTNYLLN-GNGPFP 101
IFAYGQTG KT +LN G+G P
Sbjct: 88 IFAYGQTGSGKTFTMLNPGDGIIP 111
>pdb|2REP|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member C1
Length = 376
Score = 45.1 bits (105), Expect = 9e-06, Method: Composition-based stats.
Identities = 32/98 (32%), Positives = 47/98 (47%), Gaps = 14/98 (14%)
Query: 2 PSRDTTRVYLPTAKQVRKQTTYLTGTGRSHLKPPKTFAFDHCFYSLDPNLPNFASQEKVF 61
PS TR+ L + + R T +G P F+FD F P + Q++VF
Sbjct: 54 PSDPPTRLSLSRSDERRG-----TLSGAPAPPPRHDFSFDRVF-------PPGSGQDEVF 101
Query: 62 DALGRDILDNAFQGYNACIFAYGQTGEKTNYLLNGNGP 99
+ + ++ +A GY CIFAYGQTG + + G GP
Sbjct: 102 EEIAM-LVQSALDGYPVCIFAYGQTGSGKTFTMEG-GP 137
>pdb|4GKR|A Chain A, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
pdb|4GKR|B Chain B, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
Length = 371
Score = 44.7 bits (104), Expect = 1e-05, Method: Composition-based stats.
Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 13/76 (17%)
Query: 28 GRSHLKPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTG 87
G S + P F FD F + N +++F +G+ ++ ++ GYN CIFAYGQTG
Sbjct: 69 GNSQVIP---FKFDKIFDQQETN-------DEIFKEVGQ-LIQSSLDGYNVCIFAYGQTG 117
Query: 88 E-KTNYLLN-GNGPFP 101
KT +LN G+G P
Sbjct: 118 SGKTYTMLNPGDGIVP 133
>pdb|2H58|A Chain A, Crystal Structure Of The Kifc3 Motor Domain In Complex
With Adp
Length = 330
Score = 44.7 bits (104), Expect = 1e-05, Method: Composition-based stats.
Identities = 26/73 (35%), Positives = 35/73 (47%), Gaps = 8/73 (10%)
Query: 31 HLKPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKT 90
H P +F D F P ASQ+ VF + + ++ + G+N CIFAYGQTG
Sbjct: 43 HKGKPVSFELDKVF---SPQ----ASQQDVFQEV-QALVTSCIDGFNVCIFAYGQTGAGK 94
Query: 91 NYLLNGNGPFPLI 103
Y + G P I
Sbjct: 95 TYTMEGTAENPGI 107
>pdb|1X88|A Chain A, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
pdb|1X88|B Chain B, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
Length = 359
Score = 44.3 bits (103), Expect = 2e-05, Method: Composition-based stats.
Identities = 28/80 (35%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 17 VRKQTTYLTGTGRSHLKPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGY 76
VRK+ + TG G + KT+ FD F + Q V+ ++ ILD GY
Sbjct: 37 VRKEVSVRTG-GLADKSSRKTYTFDMVFGA-------STKQIDVYRSVVCPILDEVIMGY 88
Query: 77 NACIFAYGQTGEKTNYLLNG 96
N IFAYGQTG + + G
Sbjct: 89 NCTIFAYGQTGTGKTFTMEG 108
>pdb|4A1Z|A Chain A, Eg5-1
pdb|4A1Z|B Chain B, Eg5-1
Length = 368
Score = 44.3 bits (103), Expect = 2e-05, Method: Composition-based stats.
Identities = 28/80 (35%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 17 VRKQTTYLTGTGRSHLKPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGY 76
VRK+ + TG G + KT+ FD F + Q V+ ++ ILD GY
Sbjct: 46 VRKEVSVRTG-GLADKSSRKTYTFDMVFGA-------STKQIDVYRSVVCPILDEVIMGY 97
Query: 77 NACIFAYGQTGEKTNYLLNG 96
N IFAYGQTG + + G
Sbjct: 98 NCTIFAYGQTGTGKTFTMEG 117
>pdb|3ZCW|A Chain A, Eg5 - New Allosteric Binding Site
Length = 348
Score = 43.9 bits (102), Expect = 2e-05, Method: Composition-based stats.
Identities = 28/80 (35%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 17 VRKQTTYLTGTGRSHLKPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGY 76
VRK+ + TG G + KT+ FD F + Q V+ ++ ILD GY
Sbjct: 31 VRKEVSVRTG-GLADKSSRKTYTFDMVFGA-------STKQIDVYRSVVCPILDEVIMGY 82
Query: 77 NACIFAYGQTGEKTNYLLNG 96
N IFAYGQTG + + G
Sbjct: 83 NCTIFAYGQTGTGKTFTMEG 102
>pdb|3HQD|A Chain A, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3HQD|B Chain B, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3KEN|A Chain A, Human Eg5 In Complex With S-Trityl-L-Cysteine
Length = 369
Score = 43.9 bits (102), Expect = 2e-05, Method: Composition-based stats.
Identities = 28/80 (35%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 17 VRKQTTYLTGTGRSHLKPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGY 76
VRK+ + TG G + KT+ FD F + Q V+ ++ ILD GY
Sbjct: 46 VRKEVSVRTG-GLADKSSRKTYTFDMVFGA-------STKQIDVYRSVVCPILDEVIMGY 97
Query: 77 NACIFAYGQTGEKTNYLLNG 96
N IFAYGQTG + + G
Sbjct: 98 NCTIFAYGQTGTGKTFTMEG 117
>pdb|3T0Q|A Chain A, Motor Domain Structure Of The Kar3-Like Kinesin From
Ashbya Gossypii
Length = 349
Score = 43.9 bits (102), Expect = 2e-05, Method: Composition-based stats.
Identities = 27/67 (40%), Positives = 41/67 (61%), Gaps = 10/67 (14%)
Query: 38 FAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGE-KTNYLLN- 95
F FD F +P+ N +++F+ + R ++ ++ GYN CIFAYGQTG KT +LN
Sbjct: 55 FQFDMIF---EPSHTN----KEIFEEI-RQLVQSSLDGYNVCIFAYGQTGSGKTYTMLNA 106
Query: 96 GNGPFPL 102
G+G P+
Sbjct: 107 GDGMIPM 113
>pdb|1Q0B|A Chain A, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|1Q0B|B Chain B, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|2FKY|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FKY|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FL2|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL2|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL6|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2FL6|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2IEH|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2IEH|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2Q2Y|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Y|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Z|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|2Q2Z|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|3CJO|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 30
pdb|3CJO|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 30
Length = 367
Score = 43.9 bits (102), Expect = 2e-05, Method: Composition-based stats.
Identities = 28/80 (35%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 17 VRKQTTYLTGTGRSHLKPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGY 76
VRK+ + TG G + KT+ FD F + Q V+ ++ ILD GY
Sbjct: 45 VRKEVSVRTG-GLADKSSRKTYTFDMVFGA-------STKQIDVYRSVVCPILDEVIMGY 96
Query: 77 NACIFAYGQTGEKTNYLLNG 96
N IFAYGQTG + + G
Sbjct: 97 NCTIFAYGQTGTGKTFTMEG 116
>pdb|4A28|A Chain A, Eg5-2
pdb|4A28|B Chain B, Eg5-2
Length = 368
Score = 43.9 bits (102), Expect = 2e-05, Method: Composition-based stats.
Identities = 28/80 (35%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 17 VRKQTTYLTGTGRSHLKPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGY 76
VRK+ + TG G + KT+ FD F + Q V+ ++ ILD GY
Sbjct: 46 VRKEVSVRTG-GLADKSSRKTYTFDMVFGA-------STKQIDVYRSVVCPILDEVIMGY 97
Query: 77 NACIFAYGQTGEKTNYLLNG 96
N IFAYGQTG + + G
Sbjct: 98 NCTIFAYGQTGTGKTFTMEG 117
>pdb|1II6|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1II6|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1YRS|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|1YRS|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2FME|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2FME|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2GM1|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|D Chain D, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|E Chain E, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2G1Q|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2G1Q|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2PG2|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2PG2|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2UYI|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYI|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYM|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|2UYM|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|3K5E|A Chain A, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K5E|B Chain B, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K3B|A Chain A, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3K3B|B Chain B, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3L9H|A Chain A, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|3L9H|B Chain B, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|2X7C|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7C|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7D|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7D|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7E|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2X7E|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2WOG|A Chain A, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|B Chain B, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|C Chain C, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2X2R|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2XAE|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|4A50|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
2-amino-5-(3-methylphenyl)-5,5-diphenylpentanoic Acid
pdb|4A51|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|D Chain D, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|E Chain E, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|F Chain F, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|G Chain G, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A5Y|A Chain A, Eg5-Inhibitor Complex
pdb|4A5Y|B Chain B, Eg5-Inhibitor Complex
pdb|4A5Y|C Chain C, Eg5-Inhibitor Complex
Length = 368
Score = 43.9 bits (102), Expect = 2e-05, Method: Composition-based stats.
Identities = 28/80 (35%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 17 VRKQTTYLTGTGRSHLKPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGY 76
VRK+ + TG G + KT+ FD F + Q V+ ++ ILD GY
Sbjct: 46 VRKEVSVRTG-GLADKSSRKTYTFDMVFGA-------STKQIDVYRSVVCPILDEVIMGY 97
Query: 77 NACIFAYGQTGEKTNYLLNG 96
N IFAYGQTG + + G
Sbjct: 98 NCTIFAYGQTGTGKTFTMEG 117
>pdb|4AP0|A Chain A, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|B Chain B, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|C Chain C, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|D Chain D, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
Length = 370
Score = 43.9 bits (102), Expect = 2e-05, Method: Composition-based stats.
Identities = 28/80 (35%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 17 VRKQTTYLTGTGRSHLKPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGY 76
VRK+ + TG G + KT+ FD F + Q V+ ++ ILD GY
Sbjct: 48 VRKEVSVRTG-GLADKSSRKTYTFDMVFGA-------STKQIDVYRSVVCPILDEVIMGY 99
Query: 77 NACIFAYGQTGEKTNYLLNG 96
N IFAYGQTG + + G
Sbjct: 100 NCTIFAYGQTGTGKTFTMEG 119
>pdb|3NWN|A Chain A, Crystal Structure Of The Human Kif9 Motor Domain In
Complex With Adp
Length = 359
Score = 43.5 bits (101), Expect = 3e-05, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 25/42 (59%)
Query: 55 ASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLNG 96
ASQ+ V++ + +D++ A GYN I YGQTG Y + G
Sbjct: 83 ASQDLVYETVAKDVVSQALDGYNGTIMCYGQTGAGKTYTMMG 124
>pdb|2GRY|A Chain A, Crystal Structure Of The Human Kif2 Motor Domain In
Complex With Adp
Length = 420
Score = 42.4 bits (98), Expect = 7e-05, Method: Composition-based stats.
Identities = 31/97 (31%), Positives = 45/97 (46%), Gaps = 18/97 (18%)
Query: 1 MPSRDTTRVYLPTAKQVRKQTTYLTGTGRSHLKPPKTFAFDHCFYSLDPNLPNFASQEKV 60
+PS+D V+ P KQ T YL +TF FD Y+ D + PN E V
Sbjct: 115 IPSKDVVMVHEP--KQKVDLTRYLEN---------QTFRFD---YAFDDSAPN----EMV 156
Query: 61 FDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLNGN 97
+ R +++ F+ A FAYGQTG + + G+
Sbjct: 157 YRFTARPLVETIFERGMATCFAYGQTGSGKTHTMGGD 193
>pdb|3H4S|A Chain A, Structure Of The Complex Of A Mitotic Kinesin With Its
Calcium Binding Regulator
Length = 386
Score = 42.0 bits (97), Expect = 1e-04, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 55 ASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLNGNGPFP 101
ASQ+ +F+ + ++ +A GYN CIFAYGQTG + + G+ P
Sbjct: 67 ASQDDIFEDT-KYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGHESNP 112
>pdb|4ETP|A Chain A, C-Terminal Motor And Motor Homology Domain Of Kar3vik1
Fused To A Synthetic Heterodimeric Coiled Coil
Length = 403
Score = 42.0 bits (97), Expect = 1e-04, Method: Composition-based stats.
Identities = 30/84 (35%), Positives = 42/84 (50%), Gaps = 15/84 (17%)
Query: 20 QTTYLTGTGRSHLKPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNAC 79
+ T + T + H F FD F D N+ VF +G+ ++ ++ GYN
Sbjct: 97 EVTKIQNTAQVH-----EFKFDKIFDQQDTNV-------DVFKEVGQ-LVQSSLDGYNVA 143
Query: 80 IFAYGQTGE-KTNYLLN-GNGPFP 101
IFAYGQTG KT +LN G+G P
Sbjct: 144 IFAYGQTGSGKTFTMLNPGDGIIP 167
>pdb|1SDM|A Chain A, Crystal Structure Of Kinesin-Like Calmodulin Binding
Protein
pdb|3CNZ|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3CNZ|B Chain B, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|C Chain C, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
Length = 369
Score = 40.8 bits (94), Expect = 2e-04, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 55 ASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLNGNGPFP 101
A+Q+ VF+ + ++ +A GYN CIFAYGQTG + + G P
Sbjct: 59 ATQDDVFEDT-KYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGADSNP 104
>pdb|3DC4|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Adp
pdb|3DCB|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Amppnp
pdb|3DCO|N Chain N, Drosophila Nod (3dc4) And Bovine Tubulin (1jff) Docked
Into The 11-Angstrom Cryo-Em Map Of Nucleotide-Free Nod
Complexed To The Microtubule
Length = 344
Score = 40.4 bits (93), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 7/72 (9%)
Query: 28 GRSHLKPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTG 87
G+S + F FDH F P SQ++++ AL ++D +G+ AYGQTG
Sbjct: 53 GKSLIVDQNEFHFDHAF-------PATISQDEMYQALILPLVDKLLEGFQCTALAYGQTG 105
Query: 88 EKTNYLLNGNGP 99
+Y + P
Sbjct: 106 TGKSYSMGMTPP 117
>pdb|3PXN|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Kin10NOD IN Complex With Divalent Manganese And Adp
Length = 344
Score = 40.4 bits (93), Expect = 3e-04, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 7/72 (9%)
Query: 28 GRSHLKPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTG 87
G+S + F FDH F P SQ++++ AL ++D +G+ AYGQTG
Sbjct: 53 GKSLIVDQNEFHFDHAF-------PATISQDEMYQALILPLVDKLLEGFQCTALAYGQTG 105
Query: 88 EKTNYLLNGNGP 99
+Y + P
Sbjct: 106 TGKSYSMGMTPP 117
>pdb|1GOJ|A Chain A, Structure Of A Fast Kinesin: Implications For Atpase
Mechanism And Interactions With Microtubules
Length = 355
Score = 39.3 bits (90), Expect = 6e-04, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 7/60 (11%)
Query: 37 TFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLNG 96
+F FD F Q +FD + +D+ GYN +FAYGQTG +Y + G
Sbjct: 48 SFTFDRVF-------DMSCKQSDIFDFSIKPTVDDILNGYNGTVFAYGQTGAGKSYTMMG 100
>pdb|2WBE|C Chain C, Kinesin-5-Tubulin Complex With Amppnp
Length = 373
Score = 37.7 bits (86), Expect = 0.002, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 7/65 (10%)
Query: 33 KPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNY 92
K K F FD F P + Q V+ + +++ GYN +FAYGQTG +
Sbjct: 64 KLTKKFTFDRSF---GPE----SKQCDVYSVVVSPLIEEVLNGYNCTVFAYGQTGTGKTH 116
Query: 93 LLNGN 97
+ GN
Sbjct: 117 TMVGN 121
>pdb|1V8J|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With Mg-adp
pdb|1V8K|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With
Mg-Amppnp
Length = 410
Score = 36.2 bits (82), Expect = 0.004, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 7/62 (11%)
Query: 36 KTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLN 95
+ F FD F AS E V+ R ++ F+G A FAYGQTG + +
Sbjct: 121 QAFCFDFAF-------DETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMG 173
Query: 96 GN 97
G+
Sbjct: 174 GD 175
>pdb|3EDL|D Chain D, Kinesin13-Microtubule Ring Complex
Length = 331
Score = 36.2 bits (82), Expect = 0.005, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 7/62 (11%)
Query: 36 KTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLN 95
+ F FD F AS E V+ R ++ F+G A FAYGQTG + +
Sbjct: 49 QAFCFDFAF-------DETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMG 101
Query: 96 GN 97
G+
Sbjct: 102 GD 103
>pdb|2HEH|A Chain A, Crystal Structure Of The Kif2c Motor Domain (Casp Target)
Length = 387
Score = 36.2 bits (82), Expect = 0.005, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 7/62 (11%)
Query: 36 KTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLN 95
+ F FD F AS E V+ R ++ F+G A FAYGQTG + +
Sbjct: 101 QAFCFDFAF-------DETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMG 153
Query: 96 GN 97
G+
Sbjct: 154 GD 155
>pdb|4H1G|A Chain A, Structure Of Candida Albicans Kar3 Motor Domain Fused To
Maltose- Binding Protein
Length = 715
Score = 34.7 bits (78), Expect = 0.013, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 56 SQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLN--GNGPFPL 102
S + VF+ L + ++ + G N C+FAYGQTG + ++ NG PL
Sbjct: 443 SNDLVFEELSQ-LIQCSLDGTNVCVFAYGQTGSGKTFTMSHPTNGMIPL 490
>pdb|3LRE|A Chain A, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
pdb|3LRE|B Chain B, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
Length = 355
Score = 34.3 bits (77), Expect = 0.017, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 7/64 (10%)
Query: 38 FAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLNGN 97
F FD F ++Q +VF+ + IL + GYN + AYG TG + + G+
Sbjct: 74 FVFDAVF-------DETSTQSEVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTMLGS 126
Query: 98 GPFP 101
P
Sbjct: 127 ADEP 130
>pdb|1RY6|A Chain A, Crystal Structure Of Internal Kinesin Motor Domain
Length = 360
Score = 32.0 bits (71), Expect = 0.099, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 6/63 (9%)
Query: 38 FAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLNGN 97
F D F D + NF E L D+ +N G FAYGQTG Y + G+
Sbjct: 52 FIVDKVF---DDTVDNFTVYENTIKPLIIDLYEN---GCVCSCFAYGQTGSGKTYTMLGS 105
Query: 98 GPF 100
P+
Sbjct: 106 QPY 108
>pdb|3BFN|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 22
Length = 388
Score = 29.3 bits (64), Expect = 0.55, Method: Composition-based stats.
Identities = 15/57 (26%), Positives = 27/57 (47%)
Query: 45 YSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLNGNGPFP 101
Y D ++Q+ ++ + IL + +G NA + AYG TG + + G+ P
Sbjct: 67 YQFDAFYGERSTQQDIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTHTMLGSPEQP 123
>pdb|3E0C|A Chain A, Crystal Structure Of Dna Damage-Binding Protein 1(Ddb1)
Length = 1140
Score = 28.5 bits (62), Expect = 1.1, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 66 RDILDNAFQGYNACIFAYGQTGEKTNYLLNGNG 98
+D+L YNACI Y Q+GE + + +G
Sbjct: 74 KDLLFILTAKYNACILEYKQSGESIDIITRAHG 106
>pdb|2B5L|A Chain A, Crystal Structure Of Ddb1 In Complex With Simian Virus 5 V
Protein
pdb|2B5L|B Chain B, Crystal Structure Of Ddb1 In Complex With Simian Virus 5 V
Protein
pdb|2B5M|A Chain A, Crystal Structure Of Ddb1
pdb|2HYE|A Chain A, Crystal Structure Of The Ddb1-cul4a-rbx1-sv5v Complex
Length = 1140
Score = 28.5 bits (62), Expect = 1.1, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 66 RDILDNAFQGYNACIFAYGQTGEKTNYLLNGNG 98
+D+L YNACI Y Q+GE + + +G
Sbjct: 74 KDLLFILTAKYNACILEYKQSGESIDIITRAHG 106
>pdb|4E54|A Chain A, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
pdb|4E5Z|A Chain A, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 1150
Score = 28.5 bits (62), Expect = 1.1, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 66 RDILDNAFQGYNACIFAYGQTGEKTNYLLNGNG 98
+D+L YNACI Y Q+GE + + +G
Sbjct: 84 KDLLFILTAKYNACILEYKQSGESIDIITRAHG 116
>pdb|4A0L|A Chain A, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|C Chain C, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 1144
Score = 28.5 bits (62), Expect = 1.1, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 66 RDILDNAFQGYNACIFAYGQTGEKTNYLLNGNG 98
+D+L YNACI Y Q+GE + + +G
Sbjct: 78 KDLLFILTAKYNACILEYKQSGESIDIITRAHG 110
>pdb|4A11|A Chain A, Structure Of The Hsddb1-Hscsa Complex
pdb|4A0K|C Chain C, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 1159
Score = 28.5 bits (62), Expect = 1.1, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 66 RDILDNAFQGYNACIFAYGQTGEKTNYLLNGNG 98
+D+L YNACI Y Q+GE + + +G
Sbjct: 93 KDLLFILTAKYNACILEYKQSGESIDIITRAHG 125
>pdb|4A0B|A Chain A, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0B|C Chain C, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
Length = 1159
Score = 28.5 bits (62), Expect = 1.1, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 66 RDILDNAFQGYNACIFAYGQTGEKTNYLLNGNG 98
+D+L YNACI Y Q+GE + + +G
Sbjct: 93 KDLLFILTAKYNACILEYKQSGESIDIITRAHG 125
>pdb|4A0A|A Chain A, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.6 A Resolution (Cpd 3)
Length = 1159
Score = 28.5 bits (62), Expect = 1.1, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 66 RDILDNAFQGYNACIFAYGQTGEKTNYLLNGNG 98
+D+L YNACI Y Q+GE + + +G
Sbjct: 93 KDLLFILTAKYNACILEYKQSGESIDIITRAHG 125
>pdb|4A08|A Chain A, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex (
Purine At D-1 Position) At 3.0 A Resolution (Cpd 1)
pdb|4A09|A Chain A, Structure Of Hsddb1-Drddb2 Bound To A 15 Bp Cpd-Duplex
(Purine At D-1 Position) At 3.1 A Resolution (Cpd 2)
Length = 1159
Score = 28.5 bits (62), Expect = 1.1, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 66 RDILDNAFQGYNACIFAYGQTGEKTNYLLNGNG 98
+D+L YNACI Y Q+GE + + +G
Sbjct: 93 KDLLFILTAKYNACILEYKQSGESIDIITRAHG 125
>pdb|3I7H|A Chain A, Crystal Structure Of Ddb1 In Complex With The H-Box Motif
Of Hbx
pdb|3I7K|A Chain A, Crystal Structure Of Ddb1 In Complex With The H-Box Motif
Of Whx
pdb|3I7L|A Chain A, Crystal Structure Of Ddb1 In Complex With The H-Box Motif
Of Ddb2
pdb|3I7N|A Chain A, Crystal Structure Of Ddb1 In Complex With The H-Box Motif
Of Wdtc1
pdb|3I7O|A Chain A, Crystal Structure Of Ddb1 In Complex With The H-Box Motif
Of Iqwd1
pdb|3I7P|A Chain A, Crystal Structure Of Ddb1 In Complex With The H-Box Motif
Of Wdr40a
pdb|3I89|A Chain A, Crystal Structure Of Ddb1 In Complex With The H-Box Motif
Of Wdr22
pdb|3I8C|A Chain A, Crystal Structure Of Ddb1 In Complex With The H-Box Motif
Of Wdr21a
pdb|3I8E|A Chain A, Crystal Structure Of Ddb1 In Complex With The H-Box Motif
Of Wdr42a
pdb|3I8E|B Chain B, Crystal Structure Of Ddb1 In Complex With The H-Box Motif
Of Wdr42a
Length = 1143
Score = 28.5 bits (62), Expect = 1.1, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 66 RDILDNAFQGYNACIFAYGQTGEKTNYLLNGNG 98
+D+L YNACI Y Q+GE + + +G
Sbjct: 77 KDLLFILTAKYNACILEYKQSGESIDIITRAHG 109
>pdb|3EI4|A Chain A, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|C Chain C, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|E Chain E, Structure Of The Hsddb1-Hsddb2 Complex
Length = 1158
Score = 28.5 bits (62), Expect = 1.1, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 66 RDILDNAFQGYNACIFAYGQTGEKTNYLLNGNG 98
+D+L YNACI Y Q+GE + + +G
Sbjct: 92 KDLLFILTAKYNACILEYKQSGESIDIITRAHG 124
>pdb|3EI1|A Chain A, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4
Photoproduct Containing Dna-Duplex
pdb|3EI2|A Chain A, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Abasic Site
Containing Dna-Duplex
pdb|3EI3|A Chain A, Structure Of The Hsddb1-Drddb2 Complex
Length = 1158
Score = 28.5 bits (62), Expect = 1.1, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 66 RDILDNAFQGYNACIFAYGQTGEKTNYLLNGNG 98
+D+L YNACI Y Q+GE + + +G
Sbjct: 92 KDLLFILTAKYNACILEYKQSGESIDIITRAHG 124
>pdb|3DCF|A Chain A, Crystal Structure Of Transcriptional Regulator Of The
TetrACRR FAMILY (YP_290855.1) FROM THERMOBIFIDA FUSCA
YX- Er1 At 2.50 A Resolution
pdb|3DCF|B Chain B, Crystal Structure Of Transcriptional Regulator Of The
TetrACRR FAMILY (YP_290855.1) FROM THERMOBIFIDA FUSCA
YX- Er1 At 2.50 A Resolution
Length = 218
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 54 FASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLL 94
F S+E V A+ I+D A + ++A G GE+ + LL
Sbjct: 72 FKSKEDVLFAIVNSIVDEALERFHAIAAGPGSPGERIHALL 112
>pdb|2GK1|A Chain A, X-Ray Crystal Structure Of Ngt-Bound Hexa
pdb|2GK1|C Chain C, X-Ray Crystal Structure Of Ngt-Bound Hexa
pdb|2GK1|E Chain E, X-Ray Crystal Structure Of Ngt-Bound Hexa
pdb|2GK1|G Chain G, X-Ray Crystal Structure Of Ngt-Bound Hexa
pdb|2GJX|A Chain A, Crystallographic Structure Of Human Beta-Hexosaminidase
A
pdb|2GJX|D Chain D, Crystallographic Structure Of Human Beta-Hexosaminidase
A
pdb|2GJX|E Chain E, Crystallographic Structure Of Human Beta-Hexosaminidase
A
pdb|2GJX|H Chain H, Crystallographic Structure Of Human Beta-Hexosaminidase
A
Length = 507
Score = 25.8 bits (55), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 23/52 (44%), Gaps = 4/52 (7%)
Query: 35 PKTFAFDHCFYSLDPNLPNFASQEKVFDAL--GRDILDNAFQGYNACIFAYG 84
P+ F Y L PN NF Q V A G +LD AFQ Y +F G
Sbjct: 5 PQNFQTSDQRYVLYPN--NFQFQYDVSSAAQPGCSVLDEAFQRYRDLLFGSG 54
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.139 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,517,259
Number of Sequences: 62578
Number of extensions: 139231
Number of successful extensions: 311
Number of sequences better than 100.0: 71
Number of HSP's better than 100.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 238
Number of HSP's gapped (non-prelim): 71
length of query: 103
length of database: 14,973,337
effective HSP length: 68
effective length of query: 35
effective length of database: 10,718,033
effective search space: 375131155
effective search space used: 375131155
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)