Query psy12526
Match_columns 103
No_of_seqs 169 out of 1131
Neff 7.6
Searched_HMMs 46136
Date Fri Aug 16 21:35:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12526.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12526hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0245|consensus 100.0 5.8E-30 1.3E-34 208.5 9.3 87 15-103 28-116 (1221)
2 cd01365 KISc_KIF1A_KIF1B Kines 99.9 1.9E-25 4.2E-30 168.3 10.8 88 16-103 26-115 (356)
3 cd01368 KISc_KIF23_like Kinesi 99.9 2.2E-25 4.8E-30 167.6 10.4 63 34-103 53-115 (345)
4 cd01370 KISc_KIP3_like Kinesin 99.9 1.6E-25 3.4E-30 167.9 9.2 63 34-103 52-114 (338)
5 KOG4280|consensus 99.9 1.2E-25 2.6E-30 176.9 8.3 78 19-103 35-113 (574)
6 KOG0241|consensus 99.9 1E-25 2.2E-30 183.2 7.8 89 15-103 28-120 (1714)
7 cd01367 KISc_KIF2_like Kinesin 99.9 3.8E-25 8.3E-30 164.9 9.9 62 35-103 50-111 (322)
8 cd01373 KISc_KLP2_like Kinesin 99.9 1.3E-24 2.8E-29 163.0 10.1 59 34-99 39-97 (337)
9 KOG0243|consensus 99.9 9.3E-25 2E-29 179.2 7.8 62 35-103 94-163 (1041)
10 KOG0239|consensus 99.9 1.3E-24 2.8E-29 174.4 8.0 73 23-103 347-420 (670)
11 cd01376 KISc_KID_like Kinesin 99.9 4.5E-24 9.8E-29 158.8 10.0 63 34-103 45-107 (319)
12 KOG0242|consensus 99.9 2.4E-24 5.2E-29 173.2 7.9 62 35-103 52-113 (675)
13 cd01371 KISc_KIF3 Kinesin moto 99.9 8.6E-24 1.9E-28 158.1 9.2 78 19-103 31-111 (333)
14 cd01374 KISc_CENP_E Kinesin mo 99.9 1E-23 2.2E-28 156.9 9.5 63 34-103 38-100 (321)
15 PLN03188 kinesin-12 family pro 99.9 7.4E-24 1.6E-28 176.0 8.4 58 34-98 130-187 (1320)
16 cd01369 KISc_KHC_KIF5 Kinesin 99.9 3.5E-23 7.5E-28 154.2 9.7 63 34-103 41-106 (325)
17 cd00106 KISc Kinesin motor dom 99.9 6.5E-23 1.4E-27 152.4 10.9 77 20-103 29-105 (328)
18 cd01372 KISc_KIF4 Kinesin moto 99.9 1.8E-23 3.9E-28 156.5 7.6 95 2-103 2-106 (341)
19 cd01364 KISc_BimC_Eg5 Kinesin 99.9 6.4E-23 1.4E-27 154.3 9.8 60 34-100 46-105 (352)
20 cd01375 KISc_KIF9_like Kinesin 99.9 3.8E-23 8.2E-28 154.8 8.3 62 34-103 46-110 (334)
21 PF00225 Kinesin: Kinesin moto 99.9 1.1E-22 2.4E-27 151.4 5.1 64 33-103 38-103 (335)
22 cd01366 KISc_C_terminal Kinesi 99.9 1.1E-21 2.3E-26 146.3 9.9 63 33-103 42-104 (329)
23 KOG0240|consensus 99.8 1.3E-21 2.8E-26 152.8 6.9 59 36-101 49-107 (607)
24 smart00129 KISc Kinesin motor, 99.8 5.1E-21 1.1E-25 142.8 9.7 64 33-103 43-106 (335)
25 COG5059 KIP1 Kinesin-like prot 99.8 8.9E-20 1.9E-24 144.8 6.5 62 35-103 55-116 (568)
26 KOG0246|consensus 99.8 2.1E-19 4.5E-24 140.8 7.7 56 35-97 257-312 (676)
27 KOG0247|consensus 99.7 7.1E-18 1.5E-22 135.0 7.0 63 34-103 79-141 (809)
28 cd01363 Motor_domain Myosin an 99.7 5.6E-17 1.2E-21 112.6 5.2 43 60-103 8-50 (186)
29 KOG0244|consensus 99.6 2.4E-16 5.2E-21 128.6 5.6 62 29-97 25-86 (913)
30 PF00308 Bac_DnaA: Bacterial d 96.4 0.002 4.4E-08 45.8 2.1 50 36-95 3-52 (219)
31 PRK14086 dnaA chromosomal repl 96.0 0.0074 1.6E-07 49.2 3.4 51 35-95 282-332 (617)
32 COG0556 UvrB Helicase subunit 95.9 0.0076 1.7E-07 48.6 3.2 48 36-95 3-50 (663)
33 COG2805 PilT Tfp pilus assembl 95.9 0.004 8.6E-08 47.1 1.5 30 66-95 114-143 (353)
34 PRK06620 hypothetical protein; 95.4 0.015 3.2E-07 41.3 2.9 51 35-96 10-63 (214)
35 PRK09087 hypothetical protein; 95.4 0.017 3.8E-07 41.3 3.1 48 35-95 15-62 (226)
36 COG2804 PulE Type II secretory 95.0 0.013 2.9E-07 46.7 1.7 30 67-96 248-277 (500)
37 PRK06893 DNA replication initi 94.8 0.029 6.4E-07 39.9 3.0 24 72-95 34-57 (229)
38 PF04851 ResIII: Type III rest 94.8 0.016 3.5E-07 38.4 1.5 37 56-96 7-44 (184)
39 cd00009 AAA The AAA+ (ATPases 94.5 0.03 6.4E-07 35.1 2.2 26 69-94 11-36 (151)
40 TIGR02928 orc1/cdc6 family rep 94.4 0.032 6.8E-07 41.8 2.5 39 55-94 18-57 (365)
41 PRK00411 cdc6 cell division co 94.4 0.038 8.3E-07 41.8 2.9 40 54-94 32-72 (394)
42 PRK14088 dnaA chromosomal repl 94.3 0.035 7.5E-07 43.5 2.5 50 35-95 99-148 (440)
43 PRK00149 dnaA chromosomal repl 93.9 0.041 9E-07 42.9 2.2 50 36-95 117-166 (450)
44 PRK08084 DNA replication initi 93.8 0.073 1.6E-06 38.1 3.3 48 35-95 16-63 (235)
45 PF01935 DUF87: Domain of unkn 93.8 0.018 3.9E-07 40.5 0.1 16 80-95 26-41 (229)
46 COG1484 DnaC DNA replication p 93.7 0.076 1.7E-06 38.7 3.3 40 53-95 84-123 (254)
47 TIGR00362 DnaA chromosomal rep 93.7 0.05 1.1E-06 41.7 2.4 50 36-95 105-154 (405)
48 COG1474 CDC6 Cdc6-related prot 93.6 0.064 1.4E-06 41.2 2.8 33 61-94 26-59 (366)
49 PRK10436 hypothetical protein; 93.5 0.031 6.6E-07 44.2 0.9 28 68-95 209-236 (462)
50 TIGR02533 type_II_gspE general 93.5 0.036 7.8E-07 44.0 1.3 28 68-95 233-260 (486)
51 TIGR02538 type_IV_pilB type IV 93.3 0.036 7.8E-07 44.7 1.1 28 68-95 307-334 (564)
52 PRK06526 transposase; Provisio 93.3 0.034 7.4E-07 40.5 0.9 20 74-95 97-116 (254)
53 COG0593 DnaA ATPase involved i 93.2 0.059 1.3E-06 42.1 2.1 51 34-95 80-131 (408)
54 TIGR01420 pilT_fam pilus retra 93.0 0.048 1E-06 41.3 1.2 28 68-95 113-140 (343)
55 PRK08116 hypothetical protein; 93.0 0.076 1.7E-06 38.9 2.2 40 55-95 91-132 (268)
56 PRK05642 DNA replication initi 92.9 0.1 2.3E-06 37.3 2.9 18 78-95 46-63 (234)
57 TIGR02525 plasmid_TraJ plasmid 92.7 0.057 1.2E-06 41.6 1.4 19 77-95 149-167 (372)
58 cd01129 PulE-GspE PulE/GspE Th 92.6 0.069 1.5E-06 39.1 1.5 27 69-95 72-98 (264)
59 PF00437 T2SE: Type II/IV secr 92.5 0.046 1E-06 39.5 0.6 29 66-95 117-145 (270)
60 TIGR03420 DnaA_homol_Hda DnaA 92.3 0.16 3.4E-06 35.4 3.1 21 74-94 35-55 (226)
61 PRK12377 putative replication 92.3 0.17 3.7E-06 36.8 3.3 39 55-95 81-119 (248)
62 PRK08727 hypothetical protein; 92.2 0.057 1.2E-06 38.6 0.7 17 79-95 43-59 (233)
63 TIGR02524 dot_icm_DotB Dot/Icm 92.1 0.072 1.6E-06 40.8 1.3 20 76-95 133-152 (358)
64 PRK08181 transposase; Validate 92.1 0.18 3.9E-06 37.2 3.3 20 74-95 105-124 (269)
65 PF00270 DEAD: DEAD/DEAH box h 92.0 0.079 1.7E-06 34.8 1.2 26 68-95 7-32 (169)
66 PRK14087 dnaA chromosomal repl 91.8 0.1 2.2E-06 41.0 1.9 50 37-96 111-160 (450)
67 PRK07952 DNA replication prote 91.7 0.23 4.9E-06 36.1 3.4 39 55-95 79-117 (244)
68 PRK06835 DNA replication prote 91.4 0.15 3.3E-06 38.6 2.3 36 58-95 166-201 (329)
69 PRK13894 conjugal transfer ATP 91.2 0.12 2.5E-06 39.0 1.5 28 67-95 139-166 (319)
70 PF01695 IstB_IS21: IstB-like 91.0 0.19 4.2E-06 34.6 2.3 16 79-94 49-64 (178)
71 TIGR02782 TrbB_P P-type conjug 90.8 0.11 2.3E-06 38.8 0.9 28 67-95 123-150 (299)
72 PRK09183 transposase/IS protei 90.4 0.18 3.9E-06 36.7 1.8 22 72-95 99-120 (259)
73 PRK08939 primosomal protein Dn 90.3 0.26 5.7E-06 36.9 2.7 39 56-95 135-174 (306)
74 PRK12402 replication factor C 90.1 0.24 5.3E-06 36.4 2.3 21 74-94 33-53 (337)
75 PRK08903 DnaA regulatory inact 89.9 0.29 6.3E-06 34.3 2.5 19 76-94 41-59 (227)
76 PTZ00112 origin recognition co 89.9 0.26 5.7E-06 42.5 2.6 36 58-94 761-798 (1164)
77 PF01637 Arch_ATPase: Archaeal 89.9 0.11 2.3E-06 35.6 0.3 27 68-94 11-37 (234)
78 PRK13833 conjugal transfer pro 89.8 0.24 5.1E-06 37.5 2.1 24 69-94 137-161 (323)
79 PF00063 Myosin_head: Myosin h 89.6 0.22 4.8E-06 40.9 2.0 22 73-94 81-102 (689)
80 PF13245 AAA_19: Part of AAA d 89.5 0.14 3.1E-06 30.5 0.6 16 80-95 13-28 (76)
81 PF01580 FtsK_SpoIIIE: FtsK/Sp 89.4 0.091 2E-06 36.4 -0.4 17 79-95 40-56 (205)
82 COG5008 PilU Tfp pilus assembl 89.2 0.3 6.4E-06 36.9 2.2 30 66-95 116-145 (375)
83 cd01130 VirB11-like_ATPase Typ 89.0 0.23 4.9E-06 34.1 1.4 27 67-95 16-43 (186)
84 smart00242 MYSc Myosin. Large 88.9 0.41 8.9E-06 39.6 3.0 22 73-94 88-109 (677)
85 PRK12723 flagellar biosynthesi 88.8 0.49 1.1E-05 36.7 3.2 19 77-95 174-192 (388)
86 COG1419 FlhF Flagellar GTP-bin 88.8 0.29 6.3E-06 38.3 2.0 37 58-94 180-220 (407)
87 PF05970 PIF1: PIF1-like helic 88.7 0.35 7.5E-06 36.9 2.3 36 55-94 4-39 (364)
88 smart00487 DEXDc DEAD-like hel 88.5 0.26 5.7E-06 32.3 1.4 17 79-95 26-42 (201)
89 TIGR03015 pepcterm_ATPase puta 88.5 0.26 5.6E-06 35.1 1.5 23 73-95 39-61 (269)
90 PF06048 DUF927: Domain of unk 88.4 0.45 9.7E-06 35.1 2.7 34 61-95 178-211 (286)
91 PRK12422 chromosomal replicati 88.0 0.68 1.5E-05 36.4 3.6 51 35-95 105-159 (445)
92 PF07693 KAP_NTPase: KAP famil 88.0 0.44 9.5E-06 34.9 2.4 20 75-94 18-37 (325)
93 PF13191 AAA_16: AAA ATPase do 87.9 0.11 2.4E-06 34.6 -0.7 27 68-94 15-41 (185)
94 cd01383 MYSc_type_VIII Myosin 87.8 0.71 1.5E-05 38.3 3.7 21 74-94 89-109 (677)
95 cd01377 MYSc_type_II Myosin mo 87.8 0.6 1.3E-05 38.8 3.3 21 73-93 87-107 (693)
96 PHA00729 NTP-binding motif con 87.8 0.59 1.3E-05 33.8 2.9 30 65-94 5-34 (226)
97 cd01384 MYSc_type_XI Myosin mo 87.7 0.66 1.4E-05 38.5 3.5 22 73-94 84-105 (674)
98 PF13604 AAA_30: AAA domain; P 87.7 0.22 4.8E-06 34.7 0.6 26 70-95 11-36 (196)
99 PRK11776 ATP-dependent RNA hel 87.4 0.5 1.1E-05 36.7 2.6 23 69-93 35-57 (460)
100 cd00124 MYSc Myosin motor doma 87.4 0.68 1.5E-05 38.3 3.4 34 60-94 69-103 (679)
101 cd01385 MYSc_type_IX Myosin mo 87.3 0.69 1.5E-05 38.4 3.4 21 74-94 91-111 (692)
102 PRK06921 hypothetical protein; 87.3 0.24 5.2E-06 36.3 0.7 18 78-95 118-135 (266)
103 cd01381 MYSc_type_VII Myosin m 87.2 0.79 1.7E-05 38.0 3.7 22 73-94 82-103 (671)
104 PRK13851 type IV secretion sys 87.2 0.42 9.1E-06 36.5 1.9 27 67-95 153-180 (344)
105 cd01378 MYSc_type_I Myosin mot 87.0 0.79 1.7E-05 38.0 3.6 22 73-94 82-103 (674)
106 cd01382 MYSc_type_VI Myosin mo 86.9 0.69 1.5E-05 38.6 3.2 22 73-94 87-108 (717)
107 PRK13900 type IV secretion sys 86.8 0.52 1.1E-05 35.7 2.3 26 67-94 151-177 (332)
108 PHA02244 ATPase-like protein 86.8 0.96 2.1E-05 35.2 3.7 36 56-93 100-135 (383)
109 cd01380 MYSc_type_V Myosin mot 86.8 0.76 1.6E-05 38.2 3.4 21 73-93 82-102 (691)
110 PF06309 Torsin: Torsin; Inte 86.5 1 2.3E-05 29.8 3.3 16 78-93 53-69 (127)
111 PRK06547 hypothetical protein; 86.4 0.84 1.8E-05 31.3 2.9 25 69-93 7-31 (172)
112 cd01387 MYSc_type_XV Myosin mo 86.2 0.95 2.1E-05 37.5 3.7 22 73-94 83-104 (677)
113 COG4096 HsdR Type I site-speci 86.2 1.2 2.5E-05 37.9 4.1 37 58-95 166-203 (875)
114 PTZ00424 helicase 45; Provisio 86.1 0.63 1.4E-05 35.2 2.4 26 67-94 57-82 (401)
115 TIGR00348 hsdR type I site-spe 85.6 0.65 1.4E-05 38.3 2.4 30 65-95 247-281 (667)
116 TIGR03499 FlhF flagellar biosy 85.5 0.29 6.2E-06 36.1 0.3 17 79-95 196-212 (282)
117 PHA02653 RNA helicase NPH-II; 85.3 0.84 1.8E-05 37.9 2.9 33 55-93 163-195 (675)
118 PRK13764 ATPase; Provisional 85.2 0.38 8.2E-06 39.4 0.9 18 78-95 258-275 (602)
119 PF02562 PhoH: PhoH-like prote 84.9 0.6 1.3E-05 33.2 1.7 17 77-93 19-35 (205)
120 PF00580 UvrD-helicase: UvrD/R 84.8 0.24 5.2E-06 35.6 -0.4 20 76-95 12-31 (315)
121 PRK10590 ATP-dependent RNA hel 84.7 0.88 1.9E-05 35.5 2.7 23 69-93 32-54 (456)
122 PRK11192 ATP-dependent RNA hel 84.6 0.82 1.8E-05 35.2 2.5 23 69-93 32-54 (434)
123 PRK11448 hsdR type I restricti 84.5 0.53 1.1E-05 41.1 1.5 30 66-96 423-452 (1123)
124 cd00268 DEADc DEAD-box helicas 84.5 0.99 2.1E-05 30.7 2.6 22 70-93 31-52 (203)
125 PF06414 Zeta_toxin: Zeta toxi 84.5 0.36 7.8E-06 33.4 0.4 19 76-94 14-32 (199)
126 PRK04837 ATP-dependent RNA hel 84.2 0.83 1.8E-05 35.1 2.3 23 69-93 39-61 (423)
127 KOG0989|consensus 84.1 0.94 2E-05 34.6 2.5 29 67-95 46-75 (346)
128 PRK00440 rfc replication facto 83.6 0.92 2E-05 33.0 2.3 21 74-94 35-55 (319)
129 COG4962 CpaF Flp pilus assembl 83.5 0.64 1.4E-05 35.7 1.4 27 67-94 164-190 (355)
130 PRK04328 hypothetical protein; 83.2 1.1 2.3E-05 32.3 2.5 26 67-92 10-38 (249)
131 PF13086 AAA_11: AAA domain; P 83.0 0.48 1E-05 32.4 0.5 25 70-95 11-35 (236)
132 cd01386 MYSc_type_XVIII Myosin 82.9 1.4 2.9E-05 37.2 3.2 21 74-94 83-103 (767)
133 TIGR02640 gas_vesic_GvpN gas v 82.8 1.5 3.2E-05 31.8 3.1 29 63-93 9-37 (262)
134 COG1201 Lhr Lhr-like helicases 82.5 1.3 2.8E-05 37.7 2.9 23 69-93 31-53 (814)
135 PRK01297 ATP-dependent RNA hel 82.4 1.1 2.4E-05 35.1 2.4 25 67-93 116-140 (475)
136 PRK11634 ATP-dependent RNA hel 82.3 1.1 2.4E-05 36.7 2.5 23 69-93 37-59 (629)
137 PRK14722 flhF flagellar biosyn 82.2 0.48 1.1E-05 36.6 0.3 18 78-95 138-155 (374)
138 PRK10536 hypothetical protein; 82.1 0.95 2.1E-05 33.5 1.8 17 78-94 75-91 (262)
139 TIGR02237 recomb_radB DNA repa 82.0 0.98 2.1E-05 31.1 1.8 17 77-93 12-28 (209)
140 cd01123 Rad51_DMC1_radA Rad51_ 82.0 1.3 2.8E-05 31.0 2.4 27 67-93 6-35 (235)
141 PF10923 DUF2791: P-loop Domai 81.7 1.4 3E-05 34.6 2.7 38 56-94 29-66 (416)
142 TIGR00635 ruvB Holliday juncti 81.3 1.6 3.5E-05 31.8 2.9 41 53-94 5-47 (305)
143 PRK11331 5-methylcytosine-spec 81.2 1.8 3.8E-05 34.5 3.1 29 64-94 183-211 (459)
144 PLN03025 replication factor C 81.2 1.3 2.9E-05 32.9 2.4 17 79-95 36-52 (319)
145 TIGR02881 spore_V_K stage V sp 81.1 0.56 1.2E-05 33.8 0.3 17 78-94 43-59 (261)
146 cd01379 MYSc_type_III Myosin m 81.0 1.6 3.5E-05 36.1 2.9 21 74-94 83-103 (653)
147 COG1223 Predicted ATPase (AAA+ 81.0 0.61 1.3E-05 35.2 0.5 22 72-93 146-167 (368)
148 KOG0335|consensus 80.8 0.79 1.7E-05 36.6 1.1 21 73-95 109-129 (482)
149 KOG2543|consensus 80.6 0.54 1.2E-05 36.9 0.1 18 77-94 30-47 (438)
150 PRK09270 nucleoside triphospha 80.0 3.3 7.2E-05 29.2 4.0 36 58-93 13-49 (229)
151 PRK04537 ATP-dependent RNA hel 80.0 1.5 3.3E-05 35.4 2.5 23 69-93 40-62 (572)
152 PF10236 DAP3: Mitochondrial r 79.9 1.4 3.1E-05 32.9 2.1 24 72-95 18-41 (309)
153 TIGR02688 conserved hypothetic 79.8 2.9 6.3E-05 33.2 3.9 27 67-95 201-227 (449)
154 KOG3859|consensus 79.7 0.88 1.9E-05 34.6 1.0 24 71-94 36-59 (406)
155 PTZ00014 myosin-A; Provisional 79.7 2.2 4.8E-05 36.2 3.4 20 74-93 180-199 (821)
156 PHA02544 44 clamp loader, smal 79.6 1.4 3E-05 32.3 2.0 18 77-94 43-60 (316)
157 TIGR00614 recQ_fam ATP-depende 79.5 1.9 4E-05 33.9 2.8 23 69-93 20-42 (470)
158 PRK06067 flagellar accessory p 79.3 1.7 3.7E-05 30.6 2.3 26 67-92 12-40 (234)
159 PRK05580 primosome assembly pr 79.2 1.4 2.9E-05 36.5 2.0 34 54-94 146-179 (679)
160 TIGR02903 spore_lon_C ATP-depe 79.2 1.7 3.7E-05 35.6 2.6 27 68-94 166-192 (615)
161 TIGR00631 uvrb excinuclease AB 79.2 1.1 2.5E-05 36.9 1.6 39 53-96 10-48 (655)
162 PLN00206 DEAD-box ATP-dependen 79.1 2.1 4.6E-05 34.1 3.0 24 68-93 151-174 (518)
163 COG1125 OpuBA ABC-type proline 79.1 0.47 1E-05 35.5 -0.6 13 83-95 33-45 (309)
164 PRK11057 ATP-dependent DNA hel 78.8 1.8 4E-05 35.2 2.6 23 69-93 34-56 (607)
165 PRK09361 radB DNA repair and r 78.4 2.4 5.2E-05 29.6 2.8 27 67-93 10-39 (225)
166 PF02367 UPF0079: Uncharacteri 78.4 2.6 5.7E-05 27.6 2.8 17 78-94 16-32 (123)
167 TIGR01242 26Sp45 26S proteasom 78.3 0.75 1.6E-05 34.9 0.2 17 78-94 157-173 (364)
168 KOG2373|consensus 78.2 3 6.4E-05 32.8 3.4 28 67-95 261-291 (514)
169 KOG0926|consensus 77.8 1.4 3E-05 37.8 1.7 18 77-94 271-288 (1172)
170 PRK00771 signal recognition pa 77.7 4 8.6E-05 32.2 4.1 18 77-94 95-112 (437)
171 PF03215 Rad17: Rad17 cell cyc 77.5 1.5 3.2E-05 35.3 1.7 29 66-94 32-62 (519)
172 TIGR02746 TraC-F-type type-IV 77.3 0.74 1.6E-05 38.2 -0.1 18 78-95 431-448 (797)
173 PF12774 AAA_6: Hydrolytic ATP 77.3 1.7 3.7E-05 31.3 1.9 14 82-95 37-50 (231)
174 PF12775 AAA_7: P-loop contain 77.2 1.9 4E-05 31.7 2.1 27 68-95 25-51 (272)
175 PRK05703 flhF flagellar biosyn 77.2 0.87 1.9E-05 35.6 0.3 17 79-95 223-239 (424)
176 PRK14974 cell division protein 76.9 4.1 8.9E-05 31.0 3.9 18 77-94 140-157 (336)
177 cd01127 TrwB Bacterial conjuga 76.8 0.81 1.8E-05 35.4 0.1 17 78-94 43-59 (410)
178 PF13555 AAA_29: P-loop contai 76.6 1.4 3E-05 25.6 1.0 13 80-92 26-38 (62)
179 TIGR01618 phage_P_loop phage n 76.2 1.2 2.5E-05 32.1 0.7 20 77-96 12-31 (220)
180 PF02456 Adeno_IVa2: Adenoviru 76.2 1.2 2.6E-05 34.2 0.8 15 80-94 90-104 (369)
181 PF13476 AAA_23: AAA domain; P 76.1 0.96 2.1E-05 30.3 0.3 16 79-94 21-36 (202)
182 CHL00081 chlI Mg-protoporyphyr 76.0 2 4.2E-05 33.0 1.9 36 56-95 21-56 (350)
183 PRK11889 flhF flagellar biosyn 75.6 3.1 6.7E-05 32.9 3.0 18 78-95 242-259 (436)
184 PTZ00110 helicase; Provisional 75.6 2.5 5.4E-05 34.0 2.5 23 69-93 161-183 (545)
185 COG5019 CDC3 Septin family pro 75.5 2.1 4.6E-05 33.2 2.0 25 73-97 19-46 (373)
186 PRK13341 recombination factor 75.5 1.7 3.6E-05 36.5 1.5 21 74-94 49-69 (725)
187 PF05496 RuvB_N: Holliday junc 75.5 5.8 0.00013 28.9 4.2 39 53-92 25-65 (233)
188 TIGR02788 VirB11 P-type DNA tr 75.4 2.2 4.9E-05 31.7 2.1 28 66-94 134-161 (308)
189 TIGR03819 heli_sec_ATPase heli 75.3 1.5 3.3E-05 33.3 1.2 29 66-95 168-196 (340)
190 TIGR03158 cas3_cyano CRISPR-as 75.3 2.7 5.9E-05 31.9 2.5 25 69-93 6-30 (357)
191 COG1219 ClpX ATP-dependent pro 75.2 1.4 3E-05 34.1 0.9 15 78-92 98-112 (408)
192 COG0513 SrmB Superfamily II DN 75.2 2.5 5.4E-05 33.8 2.4 24 67-92 58-81 (513)
193 PF05673 DUF815: Protein of un 75.1 2.5 5.5E-05 31.0 2.2 25 70-94 44-69 (249)
194 PRK10917 ATP-dependent DNA hel 75.1 3.4 7.3E-05 34.2 3.2 37 53-93 262-298 (681)
195 KOG0953|consensus 74.8 1.5 3.3E-05 36.0 1.1 16 79-94 193-208 (700)
196 PF00931 NB-ARC: NB-ARC domain 74.6 4.7 0.0001 28.8 3.6 29 65-93 5-35 (287)
197 TIGR03744 traC_PFL_4706 conjug 74.5 0.96 2.1E-05 38.5 -0.1 18 77-94 475-492 (893)
198 TIGR02902 spore_lonB ATP-depen 74.2 3.6 7.7E-05 33.1 3.1 24 70-93 79-102 (531)
199 PRK00080 ruvB Holliday junctio 74.2 1.3 2.8E-05 33.0 0.6 40 54-94 27-68 (328)
200 cd01394 radB RadB. The archaea 74.2 3.8 8.2E-05 28.4 2.9 27 67-93 6-35 (218)
201 cd03274 ABC_SMC4_euk Eukaryoti 74.1 0.82 1.8E-05 32.2 -0.5 13 82-94 30-42 (212)
202 PRK06995 flhF flagellar biosyn 74.1 1.1 2.5E-05 35.8 0.2 18 78-95 257-274 (484)
203 PRK04195 replication factor C 73.9 3.2 7E-05 32.7 2.8 29 66-94 27-56 (482)
204 PRK06696 uridine kinase; Valid 73.9 6.2 0.00013 27.7 4.0 34 58-92 4-37 (223)
205 COG1131 CcmA ABC-type multidru 73.9 1 2.2E-05 33.4 -0.1 12 83-94 37-48 (293)
206 PRK01172 ski2-like helicase; P 73.8 2.8 6E-05 34.4 2.4 22 70-93 32-53 (674)
207 COG0630 VirB11 Type IV secreto 73.7 1 2.2E-05 33.9 -0.1 27 67-95 135-161 (312)
208 PRK13342 recombination factor 73.7 2.8 6.2E-05 32.4 2.4 40 54-94 14-53 (413)
209 PRK10416 signal recognition pa 73.6 4.7 0.0001 30.4 3.5 18 78-95 115-132 (318)
210 TIGR01389 recQ ATP-dependent D 73.2 3.3 7.2E-05 33.4 2.7 23 69-93 22-44 (591)
211 cd01393 recA_like RecA is a b 72.9 4.1 8.8E-05 28.3 2.8 28 67-94 6-36 (226)
212 TIGR03877 thermo_KaiC_1 KaiC d 72.9 3.8 8.3E-05 29.1 2.7 26 67-92 8-36 (237)
213 TIGR00643 recG ATP-dependent D 72.8 3.9 8.5E-05 33.4 3.0 37 53-93 236-272 (630)
214 PRK03992 proteasome-activating 72.8 1.7 3.7E-05 33.5 0.9 16 78-93 166-181 (389)
215 TIGR03878 thermo_KaiC_2 KaiC d 72.6 3.2 7E-05 30.1 2.3 16 77-92 36-51 (259)
216 PHA01747 putative ATP-dependen 72.2 3 6.5E-05 32.7 2.1 29 66-94 179-207 (425)
217 PRK13767 ATP-dependent helicas 72.0 3.4 7.4E-05 35.2 2.6 22 70-93 42-63 (876)
218 KOG0340|consensus 71.8 2.7 5.9E-05 32.8 1.8 27 67-95 36-62 (442)
219 TIGR03881 KaiC_arch_4 KaiC dom 71.8 3.8 8.2E-05 28.6 2.5 28 67-94 7-37 (229)
220 PRK13531 regulatory ATPase Rav 71.5 3.8 8.3E-05 33.0 2.6 28 64-93 28-55 (498)
221 PRK12724 flagellar biosynthesi 71.3 4.7 0.0001 31.9 3.0 18 78-95 224-241 (432)
222 PF00158 Sigma54_activat: Sigm 71.3 2.2 4.8E-05 29.1 1.1 19 74-92 19-37 (168)
223 PRK10865 protein disaggregatio 71.2 4 8.6E-05 34.8 2.8 38 56-94 572-615 (857)
224 COG0396 sufC Cysteine desulfur 71.1 2.5 5.5E-05 31.0 1.4 29 71-99 18-55 (251)
225 cd00820 PEPCK_HprK Phosphoenol 70.6 1.7 3.6E-05 27.9 0.4 16 79-94 17-32 (107)
226 COG0467 RAD55 RecA-superfamily 70.3 3.7 8.1E-05 29.4 2.2 24 69-92 12-38 (260)
227 TIGR00929 VirB4_CagE type IV s 70.2 1.5 3.2E-05 36.3 0.1 18 77-94 434-451 (785)
228 PRK11664 ATP-dependent RNA hel 70.0 5.2 0.00011 34.0 3.2 27 66-94 11-37 (812)
229 CHL00181 cbbX CbbX; Provisiona 69.9 2 4.3E-05 31.8 0.7 14 80-93 62-75 (287)
230 TIGR02236 recomb_radA DNA repa 69.8 4.9 0.00011 29.6 2.8 27 67-93 82-111 (310)
231 PF10412 TrwB_AAD_bind: Type I 69.8 1.2 2.6E-05 34.2 -0.5 16 80-95 18-33 (386)
232 PLN00020 ribulose bisphosphate 69.7 5.2 0.00011 31.5 2.9 36 58-93 125-164 (413)
233 PF06745 KaiC: KaiC; InterPro 69.3 2.2 4.7E-05 29.8 0.8 24 69-92 8-34 (226)
234 PRK15483 type III restriction- 69.3 1 2.2E-05 39.0 -1.1 14 83-96 65-78 (986)
235 TIGR02880 cbbX_cfxQ probable R 69.3 2.1 4.5E-05 31.6 0.7 16 79-94 60-75 (284)
236 KOG1547|consensus 69.3 8.5 0.00018 28.8 3.8 30 63-92 31-61 (336)
237 PF14532 Sigma54_activ_2: Sigm 69.0 1.9 4.2E-05 27.9 0.4 19 75-93 19-37 (138)
238 COG3842 PotA ABC-type spermidi 69.0 1.1 2.4E-05 34.4 -0.8 13 83-95 37-49 (352)
239 TIGR01241 FtsH_fam ATP-depende 69.0 2.2 4.7E-05 33.8 0.8 16 79-94 90-105 (495)
240 PRK14723 flhF flagellar biosyn 68.9 2 4.3E-05 36.3 0.6 18 78-95 186-203 (767)
241 PHA02624 large T antigen; Prov 68.9 5.3 0.00011 33.2 2.9 27 67-93 419-447 (647)
242 PRK14721 flhF flagellar biosyn 68.8 1.8 4E-05 34.0 0.3 18 78-95 192-209 (420)
243 PRK12726 flagellar biosynthesi 68.8 1.8 4E-05 33.9 0.3 17 79-95 208-224 (407)
244 PRK09401 reverse gyrase; Revie 68.8 4.5 9.9E-05 35.7 2.7 23 68-92 88-110 (1176)
245 TIGR00376 DNA helicase, putati 68.8 3.2 7E-05 34.2 1.7 16 80-95 176-191 (637)
246 TIGR00602 rad24 checkpoint pro 68.8 2.7 5.9E-05 34.7 1.3 16 79-94 112-127 (637)
247 KOG0354|consensus 68.5 4.8 0.0001 34.0 2.7 24 67-93 69-92 (746)
248 PF11406 Tachystatin_A: Antimi 68.3 1.1 2.3E-05 23.6 -0.7 16 71-86 4-19 (44)
249 PF02534 T4SS-DNA_transf: Type 67.9 5 0.00011 31.2 2.6 18 78-95 45-62 (469)
250 PRK09302 circadian clock prote 67.9 4.7 0.0001 32.0 2.4 26 67-92 18-46 (509)
251 PTZ00454 26S protease regulato 67.7 2.4 5.3E-05 32.9 0.8 18 77-94 179-196 (398)
252 PF01293 PEPCK_ATP: Phosphoeno 67.5 2.6 5.7E-05 33.6 1.0 21 79-99 212-239 (466)
253 PTZ00361 26 proteosome regulat 67.5 1.7 3.7E-05 34.3 -0.0 16 79-94 219-234 (438)
254 COG3829 RocR Transcriptional r 67.4 4.5 9.8E-05 33.0 2.3 19 72-90 263-281 (560)
255 TIGR01970 DEAH_box_HrpB ATP-de 67.1 5.1 0.00011 34.1 2.6 26 66-93 8-33 (819)
256 TIGR03238 dnd_assoc_3 dnd syst 67.1 3.1 6.7E-05 33.5 1.3 26 70-95 19-50 (504)
257 COG1122 CbiO ABC-type cobalt t 67.0 3.2 6.9E-05 30.0 1.2 14 79-92 32-45 (235)
258 TIGR02238 recomb_DMC1 meiotic 66.8 7.3 0.00016 29.3 3.2 26 67-92 83-111 (313)
259 KOG0924|consensus 66.7 3.6 7.8E-05 34.9 1.6 20 75-94 369-388 (1042)
260 TIGR00064 ftsY signal recognit 66.6 2.3 5E-05 31.2 0.5 17 78-94 73-89 (272)
261 PRK11034 clpA ATP-dependent Cl 66.6 8.1 0.00018 32.6 3.7 37 56-93 462-504 (758)
262 cd03240 ABC_Rad50 The catalyti 66.6 3.4 7.3E-05 28.8 1.3 16 79-94 24-39 (204)
263 TIGR02655 circ_KaiC circadian 66.4 5.5 0.00012 31.6 2.6 26 67-92 8-36 (484)
264 KOG0987|consensus 66.1 7.2 0.00016 31.5 3.2 35 54-93 119-153 (540)
265 TIGR02639 ClpA ATP-dependent C 65.4 8 0.00017 32.3 3.4 37 56-93 458-500 (731)
266 cd03279 ABC_sbcCD SbcCD and ot 65.3 2.3 5E-05 29.6 0.3 16 79-94 30-45 (213)
267 TIGR02012 tigrfam_recA protein 65.3 6.7 0.00014 29.8 2.7 28 66-93 40-71 (321)
268 PRK13721 conjugal transfer ATP 65.0 2.1 4.6E-05 36.2 0.0 15 80-94 452-466 (844)
269 PRK05342 clpX ATP-dependent pr 65.0 3.1 6.6E-05 32.6 0.9 16 78-93 109-124 (412)
270 PRK04301 radA DNA repair and r 65.0 7.2 0.00016 29.0 2.9 27 67-93 89-118 (317)
271 TIGR03880 KaiC_arch_3 KaiC dom 64.9 6.4 0.00014 27.4 2.5 24 69-92 5-31 (224)
272 TIGR03117 cas_csf4 CRISPR-asso 64.9 6.6 0.00014 32.6 2.8 32 56-93 1-32 (636)
273 TIGR03345 VI_ClpV1 type VI sec 64.7 10 0.00023 32.4 4.0 37 56-93 570-612 (852)
274 cd01853 Toc34_like Toc34-like 64.6 2.7 5.9E-05 30.5 0.5 38 53-93 10-47 (249)
275 PRK14961 DNA polymerase III su 64.3 6.4 0.00014 29.9 2.5 36 55-94 19-55 (363)
276 KOG0780|consensus 64.3 7.4 0.00016 30.9 2.9 38 57-95 76-119 (483)
277 PRK10867 signal recognition pa 64.1 12 0.00026 29.6 4.0 18 77-94 100-117 (433)
278 PF02463 SMC_N: RecF/RecN/SMC 64.0 3.6 7.8E-05 28.5 1.0 13 80-92 27-39 (220)
279 PF13166 AAA_13: AAA domain 63.8 3.2 6.9E-05 34.0 0.8 12 81-92 20-31 (712)
280 cd03272 ABC_SMC3_euk Eukaryoti 63.8 2.6 5.6E-05 29.7 0.3 13 82-94 28-40 (243)
281 COG1198 PriA Primosomal protei 63.8 6.3 0.00014 33.2 2.5 32 55-92 201-232 (730)
282 PF00025 Arf: ADP-ribosylation 63.6 7 0.00015 26.3 2.4 26 68-93 4-30 (175)
283 PRK11131 ATP-dependent RNA hel 63.5 3.8 8.2E-05 36.6 1.2 30 60-92 75-104 (1294)
284 COG3839 MalK ABC-type sugar tr 63.1 1.7 3.7E-05 33.2 -0.8 12 83-94 35-46 (338)
285 smart00763 AAA_PrkA PrkA AAA d 63.1 13 0.00029 28.7 4.0 36 56-92 55-93 (361)
286 COG1126 GlnQ ABC-type polar am 63.0 4.7 0.0001 29.5 1.4 12 82-93 33-44 (240)
287 PRK13873 conjugal transfer ATP 62.7 2.5 5.4E-05 35.6 0.0 15 80-94 444-458 (811)
288 TIGR02397 dnaX_nterm DNA polym 62.6 8.4 0.00018 28.5 2.8 36 55-94 17-53 (355)
289 KOG2655|consensus 62.6 6.4 0.00014 30.6 2.2 21 72-92 16-36 (366)
290 PRK13880 conjugal transfer cou 62.3 5.7 0.00012 32.8 2.0 18 78-95 176-193 (636)
291 cd03242 ABC_RecF RecF is a rec 62.3 3.1 6.7E-05 30.2 0.5 13 82-94 26-38 (270)
292 KOG0745|consensus 62.0 4.1 8.9E-05 32.8 1.1 18 73-92 224-241 (564)
293 PRK14970 DNA polymerase III su 61.6 8.3 0.00018 29.0 2.7 28 67-94 28-56 (367)
294 TIGR01243 CDC48 AAA family ATP 61.4 4.3 9.4E-05 33.7 1.2 17 78-94 213-229 (733)
295 PRK08533 flagellar accessory p 61.4 4.3 9.4E-05 28.9 1.1 17 77-93 24-40 (230)
296 cd00983 recA RecA is a bacter 61.3 9.2 0.0002 29.1 2.9 27 66-92 40-70 (325)
297 KOG1803|consensus 61.2 3.6 7.8E-05 34.0 0.7 15 81-95 205-219 (649)
298 TIGR01425 SRP54_euk signal rec 61.1 6.9 0.00015 30.9 2.2 18 77-94 100-117 (429)
299 smart00489 DEXDc3 DEAD-like he 61.1 7.4 0.00016 28.7 2.3 37 53-95 9-45 (289)
300 smart00488 DEXDc2 DEAD-like he 61.1 7.4 0.00016 28.7 2.3 37 53-95 9-45 (289)
301 TIGR01054 rgy reverse gyrase. 60.8 7.7 0.00017 34.4 2.6 25 67-93 85-109 (1171)
302 COG1136 SalX ABC-type antimicr 60.7 4.4 9.5E-05 29.3 1.0 13 81-93 35-47 (226)
303 PRK13891 conjugal transfer pro 60.6 2.9 6.4E-05 35.5 0.1 16 79-94 490-505 (852)
304 PRK09354 recA recombinase A; P 60.6 9.5 0.00021 29.3 2.9 27 66-92 45-75 (349)
305 PRK11784 tRNA 2-selenouridine 60.6 5.2 0.00011 30.6 1.4 32 63-95 128-159 (345)
306 TIGR00580 mfd transcription-re 60.5 9.2 0.0002 33.1 3.0 21 74-94 469-489 (926)
307 PLN03187 meiotic recombination 60.5 9.6 0.00021 29.2 2.9 27 66-92 112-141 (344)
308 PRK15429 formate hydrogenlyase 60.4 7 0.00015 32.2 2.2 19 75-93 397-415 (686)
309 TIGR03817 DECH_helic helicase/ 60.4 8 0.00017 32.5 2.6 24 68-93 44-67 (742)
310 TIGR00382 clpX endopeptidase C 60.1 4.2 9.2E-05 31.9 0.9 16 78-93 117-132 (413)
311 COG0552 FtsY Signal recognitio 59.8 5.4 0.00012 30.6 1.4 20 75-94 137-156 (340)
312 TIGR03689 pup_AAA proteasome A 59.7 4.1 8.9E-05 32.9 0.8 15 79-93 218-232 (512)
313 KOG0922|consensus 59.6 6.1 0.00013 32.9 1.7 18 77-94 66-83 (674)
314 TIGR00150 HI0065_YjeE ATPase, 59.6 11 0.00024 24.9 2.7 29 64-94 11-39 (133)
315 CHL00195 ycf46 Ycf46; Provisio 59.5 3.4 7.4E-05 33.1 0.3 16 78-93 260-275 (489)
316 KOG0729|consensus 59.4 5.5 0.00012 30.4 1.3 37 56-92 184-226 (435)
317 COG4555 NatA ABC-type Na+ tran 58.8 3.3 7.2E-05 30.1 0.1 21 72-94 25-45 (245)
318 KOG0923|consensus 58.6 6.9 0.00015 33.1 1.9 18 77-94 280-297 (902)
319 TIGR01967 DEAH_box_HrpA ATP-de 58.5 11 0.00025 33.7 3.3 24 67-92 74-97 (1283)
320 TIGR02759 TraD_Ftype type IV c 58.2 3.3 7.1E-05 33.7 -0.0 15 80-94 179-193 (566)
321 PRK12727 flagellar biosynthesi 58.1 3.7 8E-05 33.5 0.3 16 79-94 352-367 (559)
322 KOG1532|consensus 58.0 4.3 9.4E-05 30.9 0.6 18 77-94 19-36 (366)
323 PF14553 YqbF: YqbF, hypotheti 57.8 5.3 0.00012 21.5 0.8 9 89-97 3-11 (43)
324 TIGR03783 Bac_Flav_CT_G Bacter 57.6 3.1 6.8E-05 35.4 -0.2 18 77-94 438-455 (829)
325 cd02019 NK Nucleoside/nucleoti 57.6 5.9 0.00013 22.7 1.0 13 81-93 3-15 (69)
326 PF00005 ABC_tran: ABC transpo 57.3 5.7 0.00012 25.1 1.0 13 80-92 14-26 (137)
327 PRK10689 transcription-repair 57.0 10 0.00022 33.6 2.7 37 53-93 601-637 (1147)
328 TIGR03346 chaperone_ClpB ATP-d 57.0 13 0.00027 31.8 3.2 37 56-93 569-611 (852)
329 PRK13853 type IV secretion sys 56.9 3.2 7E-05 34.9 -0.3 16 79-94 428-443 (789)
330 PRK13830 conjugal transfer pro 56.7 3.8 8.3E-05 34.7 0.2 18 77-94 456-473 (818)
331 PTZ00035 Rad51 protein; Provis 56.6 13 0.00029 28.1 3.1 28 66-93 104-134 (337)
332 COG0610 Type I site-specific r 56.4 2.6 5.7E-05 36.4 -0.9 14 82-95 278-291 (962)
333 TIGR00554 panK_bact pantothena 56.3 11 0.00023 28.2 2.4 17 78-94 63-79 (290)
334 TIGR02621 cas3_GSU0051 CRISPR- 56.1 7.7 0.00017 33.2 1.8 25 68-93 23-47 (844)
335 COG1222 RPT1 ATP-dependent 26S 55.8 5.7 0.00012 31.0 1.0 34 58-91 161-199 (406)
336 TIGR02639 ClpA ATP-dependent C 55.8 10 0.00022 31.6 2.5 39 53-95 183-221 (731)
337 TIGR01243 CDC48 AAA family ATP 55.6 5.8 0.00013 33.0 1.0 15 79-93 489-503 (733)
338 TIGR01817 nifA Nif-specific re 55.6 9.5 0.00021 30.4 2.2 19 75-93 217-235 (534)
339 PF05872 DUF853: Bacterial pro 55.4 5.3 0.00011 32.1 0.7 14 82-95 24-37 (502)
340 TIGR00959 ffh signal recogniti 55.2 6.4 0.00014 31.0 1.1 18 77-94 99-116 (428)
341 cd00984 DnaB_C DnaB helicase C 55.2 11 0.00023 26.4 2.2 24 70-93 4-29 (242)
342 TIGR01074 rep ATP-dependent DN 54.9 4.2 9.2E-05 33.2 0.1 18 78-95 15-32 (664)
343 cd03239 ABC_SMC_head The struc 54.7 6.2 0.00013 27.0 0.9 13 82-94 27-39 (178)
344 TIGR00763 lon ATP-dependent pr 54.7 17 0.00038 30.5 3.7 15 79-93 349-363 (775)
345 COG1118 CysA ABC-type sulfate/ 54.4 3.3 7.3E-05 31.7 -0.5 13 82-94 33-45 (345)
346 PF13481 AAA_25: AAA domain; P 54.3 5.3 0.00012 26.9 0.5 28 67-94 19-49 (193)
347 KOG0330|consensus 54.2 7.4 0.00016 30.8 1.3 23 69-93 92-114 (476)
348 COG5022 Myosin heavy chain [Cy 54.2 21 0.00045 32.5 4.1 32 60-92 135-167 (1463)
349 KOG1800|consensus 53.9 12 0.00026 29.7 2.4 21 68-88 101-121 (468)
350 cd03275 ABC_SMC1_euk Eukaryoti 53.8 7.2 0.00016 27.8 1.2 13 81-93 26-38 (247)
351 TIGR02767 TraG-Ti Ti-type conj 53.5 9 0.00019 31.7 1.8 19 77-95 211-229 (623)
352 PLN02165 adenylate isopentenyl 53.1 6.7 0.00015 30.0 0.9 15 79-93 45-59 (334)
353 cd03278 ABC_SMC_barmotin Barmo 53.1 4.5 9.8E-05 28.0 0.0 13 82-94 27-39 (197)
354 COG2256 MGS1 ATPase related to 53.1 7.7 0.00017 30.7 1.3 39 53-92 25-63 (436)
355 PRK05973 replicative DNA helic 53.1 10 0.00023 27.4 1.9 22 71-92 56-79 (237)
356 COG1074 RecB ATP-dependent exo 53.0 5.4 0.00012 35.0 0.5 19 77-95 16-34 (1139)
357 PRK13537 nodulation ABC transp 53.0 3.4 7.3E-05 30.7 -0.7 13 82-94 38-50 (306)
358 TIGR00390 hslU ATP-dependent p 53.0 6.5 0.00014 31.2 0.9 16 78-93 48-63 (441)
359 cd01121 Sms Sms (bacterial rad 52.9 7.6 0.00016 30.0 1.2 29 67-95 69-100 (372)
360 PF13654 AAA_32: AAA domain; P 52.9 4.5 9.8E-05 32.5 0.0 39 54-95 10-48 (509)
361 PF03193 DUF258: Protein of un 52.9 11 0.00023 25.9 1.8 23 69-93 29-51 (161)
362 cd03241 ABC_RecN RecN ATPase i 52.7 5.7 0.00012 28.9 0.5 18 74-94 21-38 (276)
363 cd03238 ABC_UvrA The excision 52.5 4.6 9.9E-05 27.8 -0.0 14 81-94 25-38 (176)
364 cd03225 ABC_cobalt_CbiO_domain 52.4 3.2 6.9E-05 28.6 -0.8 12 82-93 32-43 (211)
365 CHL00176 ftsH cell division pr 52.4 6.4 0.00014 32.5 0.8 16 79-94 218-233 (638)
366 KOG2035|consensus 52.2 19 0.0004 27.6 3.1 15 79-93 36-50 (351)
367 TIGR02239 recomb_RAD51 DNA rep 52.1 20 0.00042 27.0 3.3 28 67-94 83-113 (316)
368 PLN03137 ATP-dependent DNA hel 51.9 13 0.00028 33.1 2.6 26 66-93 466-491 (1195)
369 PRK12337 2-phosphoglycerate ki 51.9 10 0.00022 30.4 1.8 19 76-94 254-272 (475)
370 PRK11823 DNA repair protein Ra 51.8 14 0.0003 29.2 2.5 28 67-94 67-97 (446)
371 cd03276 ABC_SMC6_euk Eukaryoti 51.7 5.4 0.00012 27.7 0.2 13 82-94 26-38 (198)
372 KOG0344|consensus 51.5 8.1 0.00017 31.7 1.2 23 69-93 167-189 (593)
373 COG0419 SbcC ATPase involved i 51.4 8.2 0.00018 33.0 1.3 13 80-92 28-40 (908)
374 PRK06851 hypothetical protein; 51.4 7.9 0.00017 29.9 1.1 28 68-95 21-48 (367)
375 PRK10463 hydrogenase nickel in 51.4 10 0.00022 28.4 1.7 26 69-94 95-121 (290)
376 PRK05537 bifunctional sulfate 51.3 13 0.00029 30.2 2.4 37 54-92 371-407 (568)
377 cd03243 ABC_MutS_homologs The 51.2 6.2 0.00013 27.2 0.5 17 78-94 30-46 (202)
378 TIGR02030 BchI-ChlI magnesium 51.1 18 0.0004 27.5 3.0 37 55-95 7-43 (337)
379 PRK13889 conjugal transfer rel 51.0 9.4 0.0002 33.3 1.6 27 68-95 354-380 (988)
380 COG4152 ABC-type uncharacteriz 50.9 6.6 0.00014 29.4 0.6 15 80-94 30-45 (300)
381 PF01078 Mg_chelatase: Magnesi 50.7 20 0.00043 25.6 3.0 21 70-92 17-37 (206)
382 PRK06731 flhF flagellar biosyn 50.7 5.5 0.00012 29.4 0.1 18 78-95 76-93 (270)
383 COG0444 DppD ABC-type dipeptid 50.4 4.1 8.8E-05 31.0 -0.6 12 83-94 37-48 (316)
384 TIGR00960 3a0501s02 Type II (G 50.4 3.6 7.8E-05 28.5 -0.8 12 82-93 34-45 (216)
385 PRK10869 recombination and rep 50.3 8.9 0.00019 31.1 1.3 16 74-92 22-37 (553)
386 PHA02774 E1; Provisional 50.3 13 0.00027 30.8 2.1 25 69-93 424-450 (613)
387 COG3587 Restriction endonuclea 50.2 6.9 0.00015 33.7 0.7 17 76-94 75-91 (985)
388 COG1137 YhbG ABC-type (unclass 50.2 10 0.00022 27.6 1.4 13 83-95 36-48 (243)
389 KOG0925|consensus 49.9 11 0.00024 30.9 1.7 19 75-93 60-78 (699)
390 PRK13822 conjugal transfer cou 49.9 11 0.00025 31.2 1.8 19 77-95 224-242 (641)
391 PLN02200 adenylate kinase fami 49.8 7.9 0.00017 27.7 0.8 15 78-92 44-58 (234)
392 PRK13946 shikimate kinase; Pro 49.6 8.2 0.00018 26.2 0.9 15 79-93 12-26 (184)
393 COG1119 ModF ABC-type molybden 49.5 6.7 0.00014 29.0 0.4 18 73-92 55-72 (257)
394 KOG0160|consensus 49.4 13 0.00028 32.0 2.1 24 71-94 88-111 (862)
395 PRK14701 reverse gyrase; Provi 49.2 15 0.00032 33.8 2.6 24 67-92 86-109 (1638)
396 PRK10820 DNA-binding transcrip 49.1 13 0.00028 29.8 2.0 19 75-93 225-243 (520)
397 cd03273 ABC_SMC2_euk Eukaryoti 49.0 10 0.00022 27.0 1.3 17 74-93 25-41 (251)
398 TIGR02858 spore_III_AA stage I 49.0 6.1 0.00013 29.1 0.2 16 79-94 113-128 (270)
399 KOG0735|consensus 49.0 8.1 0.00018 33.0 0.9 17 77-93 701-717 (952)
400 cd03264 ABC_drug_resistance_li 49.0 3.9 8.4E-05 28.2 -0.9 13 81-93 29-41 (211)
401 PRK13536 nodulation factor exp 48.9 4 8.7E-05 30.9 -0.8 12 83-94 73-84 (340)
402 COG5519 Superfamily II helicas 48.9 39 0.00085 27.8 4.7 40 55-95 167-206 (562)
403 cd03258 ABC_MetN_methionine_tr 48.7 6.3 0.00014 27.6 0.2 13 81-93 35-47 (233)
404 KOG0951|consensus 48.7 43 0.00093 30.6 5.1 56 36-92 282-340 (1674)
405 PRK11034 clpA ATP-dependent Cl 48.7 13 0.00028 31.5 2.0 16 81-96 211-226 (758)
406 PRK13898 type IV secretion sys 48.7 6.1 0.00013 33.3 0.1 17 78-94 447-463 (800)
407 PRK14962 DNA polymerase III su 48.7 19 0.00041 28.7 2.9 17 78-94 37-53 (472)
408 KOG0739|consensus 48.6 8.4 0.00018 29.8 0.9 31 62-92 147-181 (439)
409 TIGR02329 propionate_PrpR prop 48.6 13 0.00029 30.0 2.0 20 74-93 232-251 (526)
410 TIGR03743 SXT_TraD conjugative 48.6 5.9 0.00013 32.7 0.0 18 77-94 176-193 (634)
411 PRK00254 ski2-like helicase; P 48.6 10 0.00022 31.4 1.4 20 72-93 36-55 (720)
412 cd03293 ABC_NrtD_SsuB_transpor 48.5 6.4 0.00014 27.3 0.2 13 81-93 34-46 (220)
413 TIGR00609 recB exodeoxyribonuc 48.3 3.9 8.4E-05 35.7 -1.1 16 81-96 13-28 (1087)
414 PRK13897 type IV secretion sys 48.3 14 0.00029 30.5 2.1 18 78-95 159-176 (606)
415 PRK13850 type IV secretion sys 48.3 12 0.00027 31.2 1.8 21 75-95 137-157 (670)
416 PLN03186 DNA repair protein RA 48.3 23 0.0005 27.1 3.2 27 67-93 110-139 (342)
417 TIGR02655 circ_KaiC circadian 48.0 15 0.00033 29.1 2.3 27 66-92 249-278 (484)
418 TIGR01188 drrA daunorubicin re 48.0 6.6 0.00014 28.9 0.2 13 82-94 24-36 (302)
419 KOG0328|consensus 47.9 18 0.0004 27.7 2.5 25 68-94 57-81 (400)
420 PF00176 SNF2_N: SNF2 family N 47.7 14 0.0003 26.3 1.8 22 74-96 23-44 (299)
421 PF03969 AFG1_ATPase: AFG1-lik 47.4 7.1 0.00015 30.0 0.3 16 79-94 64-79 (362)
422 TIGR03608 L_ocin_972_ABC putat 47.3 6.9 0.00015 26.7 0.2 13 81-93 28-40 (206)
423 cd03265 ABC_DrrA DrrA is the A 47.3 6.9 0.00015 27.2 0.2 13 81-93 30-42 (220)
424 COG0606 Predicted ATPase with 47.1 25 0.00055 28.4 3.3 22 70-93 193-214 (490)
425 PF04665 Pox_A32: Poxvirus A32 47.1 7.4 0.00016 28.4 0.4 17 76-94 14-30 (241)
426 PRK07667 uridine kinase; Provi 47.0 8.9 0.00019 26.4 0.7 18 75-92 15-32 (193)
427 TIGR01288 nodI ATP-binding ABC 46.9 7 0.00015 28.8 0.2 13 82-94 35-47 (303)
428 cd03263 ABC_subfamily_A The AB 46.9 4.4 9.5E-05 28.1 -0.8 12 82-93 33-44 (220)
429 KOG0348|consensus 46.8 15 0.00033 30.3 2.1 23 68-92 167-189 (708)
430 cd03245 ABCC_bacteriocin_expor 46.7 4.4 9.5E-05 28.1 -0.9 13 82-94 35-47 (220)
431 KOG0652|consensus 46.6 10 0.00022 28.9 1.0 14 79-92 207-220 (424)
432 COG2204 AtoC Response regulato 46.6 11 0.00023 30.3 1.1 18 73-90 160-177 (464)
433 cd03226 ABC_cobalt_CbiO_domain 46.5 7.2 0.00016 26.8 0.2 13 81-93 30-42 (205)
434 PRK13538 cytochrome c biogenes 46.4 4.5 9.7E-05 27.9 -0.9 12 82-93 32-43 (204)
435 PRK10584 putative ABC transpor 46.3 4.5 9.8E-05 28.2 -0.8 13 81-93 40-52 (228)
436 PLN02748 tRNA dimethylallyltra 46.3 9.9 0.00021 30.4 1.0 15 78-92 23-37 (468)
437 PRK05022 anaerobic nitric oxid 46.3 8.6 0.00019 30.6 0.6 19 75-93 208-226 (509)
438 TIGR03598 GTPase_YsxC ribosome 46.2 6.7 0.00015 26.2 0.0 17 78-94 19-35 (179)
439 PRK02362 ski2-like helicase; P 46.2 17 0.00036 30.3 2.3 20 72-93 36-55 (737)
440 TIGR00678 holB DNA polymerase 46.1 25 0.00054 23.7 2.8 22 72-93 8-30 (188)
441 COG0411 LivG ABC-type branched 46.1 11 0.00025 27.7 1.2 12 83-94 36-47 (250)
442 COG1783 XtmB Phage terminase l 46.0 9.4 0.0002 30.0 0.8 16 79-94 26-41 (414)
443 cd01919 PEPCK Phosphoenolpyruv 46.0 13 0.00029 30.0 1.7 18 79-96 219-236 (515)
444 PRK05201 hslU ATP-dependent pr 45.9 9.1 0.0002 30.4 0.7 15 78-92 51-65 (443)
445 PRK05986 cob(I)alamin adenolsy 45.8 6.6 0.00014 27.7 -0.1 19 78-96 23-41 (191)
446 PF08423 Rad51: Rad51; InterP 45.5 7.4 0.00016 28.3 0.2 27 66-92 24-53 (256)
447 TIGR03522 GldA_ABC_ATP gliding 45.5 7.6 0.00016 28.6 0.2 13 82-94 33-45 (301)
448 PRK13539 cytochrome c biogenes 45.4 4.8 0.0001 27.8 -0.8 12 82-93 33-44 (207)
449 TIGR03864 PQQ_ABC_ATP ABC tran 45.4 4.8 0.0001 28.3 -0.8 12 82-93 32-43 (236)
450 cd03229 ABC_Class3 This class 45.3 7.7 0.00017 26.1 0.2 12 82-93 31-42 (178)
451 PLN02840 tRNA dimethylallyltra 45.3 11 0.00023 29.8 1.0 15 79-93 23-37 (421)
452 PRK11432 fbpC ferric transport 45.2 7.8 0.00017 29.5 0.2 12 83-94 38-49 (351)
453 cd01918 HprK_C HprK/P, the bif 45.2 15 0.00034 24.7 1.7 18 76-93 13-30 (149)
454 PRK10263 DNA translocase FtsK; 45.2 7.3 0.00016 35.0 0.1 16 79-94 1012-1027(1355)
455 TIGR03265 PhnT2 putative 2-ami 45.1 7.7 0.00017 29.5 0.2 13 82-94 35-47 (353)
456 TIGR01166 cbiO cobalt transpor 45.1 7.8 0.00017 26.2 0.2 12 82-93 23-34 (190)
457 cd03297 ABC_ModC_molybdenum_tr 45.0 12 0.00027 25.8 1.2 14 79-92 25-38 (214)
458 KOG1514|consensus 45.0 34 0.00074 29.1 3.8 30 67-96 410-441 (767)
459 cd03218 ABC_YhbG The ABC trans 44.9 13 0.00027 26.0 1.2 14 80-93 29-42 (232)
460 KOG1970|consensus 44.8 30 0.00065 28.7 3.4 44 52-95 78-128 (634)
461 cd03256 ABC_PhnC_transporter A 44.7 7.9 0.00017 27.1 0.2 12 82-93 32-43 (241)
462 COG4148 ModC ABC-type molybdat 44.6 9.8 0.00021 29.1 0.7 12 82-93 29-40 (352)
463 cd03269 ABC_putative_ATPase Th 44.6 8 0.00017 26.6 0.2 13 81-93 30-42 (210)
464 TIGR02768 TraA_Ti Ti-type conj 44.5 13 0.00028 31.3 1.4 27 69-96 361-387 (744)
465 cd03214 ABC_Iron-Siderophores_ 44.4 5 0.00011 27.1 -0.8 12 82-93 30-41 (180)
466 PRK06645 DNA polymerase III su 44.4 22 0.00047 28.7 2.6 17 78-94 44-60 (507)
467 cd03221 ABCF_EF-3 ABCF_EF-3 E 44.4 5 0.00011 26.3 -0.8 14 81-94 30-43 (144)
468 PRK13700 conjugal transfer pro 44.3 7.2 0.00016 32.9 -0.1 16 80-95 188-203 (732)
469 PRK11650 ugpC glycerol-3-phosp 44.3 5.5 0.00012 30.3 -0.7 13 82-94 35-47 (356)
470 TIGR03754 conj_TOL_TraD conjug 44.1 11 0.00023 31.4 0.9 15 80-94 183-197 (643)
471 cd03255 ABC_MJ0796_Lo1CDE_FtsE 44.1 13 0.00029 25.6 1.2 13 81-93 34-46 (218)
472 PRK11607 potG putrescine trans 44.0 8.1 0.00018 29.7 0.2 14 81-94 49-62 (377)
473 PRK10876 recB exonuclease V su 44.0 5 0.00011 35.4 -1.1 13 83-95 23-35 (1181)
474 CHL00095 clpC Clp protease ATP 44.0 33 0.00071 29.1 3.7 36 56-92 513-554 (821)
475 cd04155 Arl3 Arl3 subfamily. 43.9 14 0.00031 24.0 1.3 18 77-94 14-31 (173)
476 cd03261 ABC_Org_Solvent_Resist 43.8 8.4 0.00018 27.0 0.2 13 81-93 30-42 (235)
477 COG0410 LivF ABC-type branched 43.8 8.6 0.00019 28.1 0.3 13 82-94 34-46 (237)
478 TIGR00634 recN DNA repair prot 43.8 12 0.00026 30.3 1.1 18 74-94 22-39 (563)
479 TIGR00416 sms DNA repair prote 43.7 15 0.00032 29.1 1.6 29 67-95 81-112 (454)
480 PRK14964 DNA polymerase III su 43.6 23 0.00049 28.5 2.6 20 74-93 31-51 (491)
481 cd03283 ABC_MutS-like MutS-lik 43.6 9.3 0.0002 26.6 0.4 16 79-94 27-42 (199)
482 PRK04220 2-phosphoglycerate ki 43.6 27 0.00058 26.4 2.9 17 76-92 91-107 (301)
483 PRK11022 dppD dipeptide transp 43.6 5.1 0.00011 30.1 -1.0 12 82-93 38-49 (326)
484 KOG2228|consensus 43.3 49 0.0011 26.0 4.2 35 56-94 32-66 (408)
485 TIGR02974 phageshock_pspF psp 43.1 9.8 0.00021 28.7 0.5 19 75-93 20-38 (329)
486 cd03222 ABC_RNaseL_inhibitor T 43.1 7.7 0.00017 26.6 -0.1 14 80-93 28-41 (177)
487 COG1866 PckA Phosphoenolpyruva 43.1 19 0.00041 29.1 2.0 21 79-99 229-256 (529)
488 PHA02558 uvsW UvsW helicase; P 43.1 21 0.00045 28.4 2.3 24 69-94 123-146 (501)
489 PRK11629 lolD lipoprotein tran 43.0 8.7 0.00019 26.9 0.2 13 81-93 39-51 (233)
490 cd03237 ABC_RNaseL_inhibitor_d 42.9 8.8 0.00019 27.5 0.2 14 80-93 28-41 (246)
491 PRK13876 conjugal transfer cou 42.8 18 0.00039 30.2 2.0 19 76-94 143-161 (663)
492 TIGR01073 pcrA ATP-dependent D 42.8 9 0.0002 31.8 0.3 19 77-95 17-35 (726)
493 COG1221 PspF Transcriptional r 42.8 25 0.00054 27.7 2.7 20 73-92 97-116 (403)
494 cd03292 ABC_FtsE_transporter F 42.7 14 0.00031 25.3 1.3 11 82-92 32-42 (214)
495 TIGR00611 recf recF protein. A 42.7 10 0.00022 29.1 0.5 14 81-94 27-40 (365)
496 PRK00064 recF recombination pr 42.7 10 0.00022 28.9 0.5 14 81-94 27-40 (361)
497 PRK09452 potA putrescine/sperm 42.6 8.7 0.00019 29.6 0.1 13 82-94 45-57 (375)
498 TIGR01650 PD_CobS cobaltochela 42.6 11 0.00025 28.7 0.8 26 66-93 55-80 (327)
499 PRK13650 cbiO cobalt transport 42.6 5.7 0.00012 28.9 -0.9 14 81-94 37-50 (279)
500 TIGR00750 lao LAO/AO transport 42.5 17 0.00037 26.8 1.7 15 80-94 37-51 (300)
No 1
>KOG0245|consensus
Probab=99.96 E-value=5.8e-30 Score=208.46 Aligned_cols=87 Identities=43% Similarity=0.741 Sum_probs=76.0
Q ss_pred ccccCCEEEEecCCCCCCCCCceEEeceEEecCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEe
Q psy12526 15 KQVRKQTTYLTGTGRSHLKPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~F~fd~vf~s~~~~~~~~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm 94 (103)
.++.++.+.+.+|..... ...|+||++|||||.+.|.+++|..||++++.++|+++|+|||+||||||||||||+|||
T Consensus 28 vqm~gn~ttii~~~~~k~--~~~FtfD~SYWS~d~edPhfAsQ~qVYedlg~~mL~~AfEGYN~ClFAYGQTGSGKSYTM 105 (1221)
T KOG0245|consen 28 VQMQGNTTTIINPKGSKD--APKFTFDYSYWSHDSEDPHFASQKQVYEDLGREMLDHAFEGYNVCLFAYGQTGSGKSYTM 105 (1221)
T ss_pred EEecCCceeeecCCCccc--CCceecceeeecCCCCCCchhhHHHHHHHHhHHHHHHHhcccceEEEEeccCCCCcceee
Confidence 556666666655544222 344999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCC--CCCCC
Q psy12526 95 NGNG--PFPLI 103 (103)
Q Consensus 95 ~G~~--~~pGi 103 (103)
||.. ++|||
T Consensus 106 MG~~~~~e~GI 116 (1221)
T KOG0245|consen 106 MGFQEPDEPGI 116 (1221)
T ss_pred eccCCCCCCCc
Confidence 9998 89997
No 2
>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.
Probab=99.93 E-value=1.9e-25 Score=168.27 Aligned_cols=88 Identities=45% Similarity=0.806 Sum_probs=73.1
Q ss_pred cccCCEEEEecCCCCC--CCCCceEEeceEEecCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceE
Q psy12526 16 QVRKQTTYLTGTGRSH--LKPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYL 93 (103)
Q Consensus 16 ~~~~~~~~~~~~~~~~--~~~~~~F~fd~vf~s~~~~~~~~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~T 93 (103)
...++.+.+..+.... ....+.|.||+|||+.++..+..++|++||+.++.|+|+++++|+|+|||||||||||||||
T Consensus 26 ~~~~~~v~v~~~~~~~~~~~~~~~f~FD~vf~~~~~~~~~~~tq~~vf~~~~~p~v~~~l~G~n~~i~ayGqtGSGKT~T 105 (356)
T cd01365 26 QMPGKVTTLKNPKAADATRKKPKSFSFDHSYWSHDSEDPHYASQEDVFEDLGRELLDHAFEGYNVCLFAYGQTGSGKSYT 105 (356)
T ss_pred EECCCEEEEEcCCcccccccCceEEECCeEecccCCCCCCCCCHHHHHHHHHHHHHHHHhCCCceEEEEecCCCCCCeEE
Confidence 3344555665554311 23468999999999776666667999999999999999999999999999999999999999
Q ss_pred eccCCCCCCC
Q psy12526 94 LNGNGPFPLI 103 (103)
Q Consensus 94 m~G~~~~pGi 103 (103)
|+|+..++||
T Consensus 106 m~G~~~~~Gl 115 (356)
T cd01365 106 MMGYKEEKGI 115 (356)
T ss_pred ecCCCCCCch
Confidence 9999999997
No 3
>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, a
Probab=99.93 E-value=2.2e-25 Score=167.58 Aligned_cols=63 Identities=22% Similarity=0.423 Sum_probs=60.9
Q ss_pred CCceEEeceEEecCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEeccCCCCCCC
Q psy12526 34 PPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLNGNGPFPLI 103 (103)
Q Consensus 34 ~~~~F~fd~vf~s~~~~~~~~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~G~~~~pGi 103 (103)
.++.|.||+||+ +.++|++||+.++.|+|+.+++|+|+||||||||||||||||+|+.+++||
T Consensus 53 ~~~~f~Fd~vf~-------~~~tq~~vy~~~~~p~v~~~l~G~n~ti~aYGqtGSGKTyTm~G~~~~~Gl 115 (345)
T cd01368 53 KETKFSFSKVFG-------PNTTQKEFFEGTALPLVQDLLKGKNSLLFTYGVTNSGKTYTMQGSPGDGGI 115 (345)
T ss_pred CceEeecCeEEC-------CCCCHHHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCCeEEecCCCCCCch
Confidence 578999999999 899999999999999999999999999999999999999999999999997
No 4
>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a sec
Probab=99.93 E-value=1.6e-25 Score=167.95 Aligned_cols=63 Identities=30% Similarity=0.594 Sum_probs=60.8
Q ss_pred CCceEEeceEEecCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEeccCCCCCCC
Q psy12526 34 PPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLNGNGPFPLI 103 (103)
Q Consensus 34 ~~~~F~fd~vf~s~~~~~~~~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~G~~~~pGi 103 (103)
.++.|.||+||+ +.++|++||+.+++|+|+++++|||+||||||||||||||||+|+.++|||
T Consensus 52 ~~~~f~Fd~vf~-------~~~~q~~vf~~~~~plv~~~~~G~n~~i~ayGqtGSGKTyTm~G~~~~~Gi 114 (338)
T cd01370 52 KELKYSFDRVFD-------ETSTQEEVYENTTKPLVDGVLNGYNATVFAYGATGAGKTHTMLGTDSDPGL 114 (338)
T ss_pred CceEEEeccccC-------CCCCHHHHHHHHHHHHHHHHHCCCCceEEeeCCCCCCCeEEEcCCCCCCch
Confidence 468999999999 899999999999999999999999999999999999999999999999997
No 5
>KOG4280|consensus
Probab=99.92 E-value=1.2e-25 Score=176.93 Aligned_cols=78 Identities=27% Similarity=0.486 Sum_probs=68.6
Q ss_pred CCEEEEecCCCCCCCCCceEEeceEEecCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEeccC-
Q psy12526 19 KQTTYLTGTGRSHLKPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLNGN- 97 (103)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~F~fd~vf~s~~~~~~~~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~G~- 97 (103)
..++.+.++.......++.|+||.||+ +.++|++||+.++.|+|+++++|||+||||||||||||||||+|+
T Consensus 35 ~~~~~l~~~~~~~~~~~~~ftfD~vf~-------~~stQ~dvy~~~~~~lV~svl~GyNgtvFaYGQTGsGKTyTM~G~~ 107 (574)
T KOG4280|consen 35 HGRVSLKNPVAGIEGKPKSFTFDAVFD-------SDSTQDDVYQETVAPLVESVLEGYNGTVFAYGQTGSGKTYTMIGPD 107 (574)
T ss_pred cceeeecCCcccccCCCCCceeeeeec-------CCCCHHHHHHHHhHHHHHHHhcccCceEEEeccCCCCCceEeeCCC
Confidence 355666666666667889999999998 899999999999999999999999999999999999999999999
Q ss_pred CCCCCC
Q psy12526 98 GPFPLI 103 (103)
Q Consensus 98 ~~~pGi 103 (103)
.+.-||
T Consensus 108 ~~~~Gi 113 (574)
T KOG4280|consen 108 PELRGL 113 (574)
T ss_pred hhhCCc
Confidence 445554
No 6
>KOG0241|consensus
Probab=99.92 E-value=1e-25 Score=183.22 Aligned_cols=89 Identities=55% Similarity=0.915 Sum_probs=78.7
Q ss_pred ccccCCEEEEecCCCC----CCCCCceEEeceEEecCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCC
Q psy12526 15 KQVRKQTTYLTGTGRS----HLKPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKT 90 (103)
Q Consensus 15 ~~~~~~~~~~~~~~~~----~~~~~~~F~fd~vf~s~~~~~~~~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGK 90 (103)
.+++.++++++.|... ..+.+|+|+||+||||.++..-..++|+.||+.++..+|+.+|+|||+||||||||||||
T Consensus 28 v~vd~~q~vl~~~pp~~~~~~~k~pktFAFDhcF~s~dpes~n~agQE~Vf~~lG~~il~naf~GyNaCifaYGQtGsGK 107 (1714)
T KOG0241|consen 28 VEVDKNQTVLHPPPPNHKIGESKGPKTFAFDHCFWSMDPESKNYAGQETVFKCLGEGILENAFQGYNACIFAYGQTGSGK 107 (1714)
T ss_pred EEeccCceeecCCCccccccccCCCceeecccccccCCccccccccchhHHHhcchHHHHHHhhccceeeEEecccCCCc
Confidence 4566778888776443 224689999999999999777789999999999999999999999999999999999999
Q ss_pred ceEeccCCCCCCC
Q psy12526 91 NYLLNGNGPFPLI 103 (103)
Q Consensus 91 T~Tm~G~~~~pGi 103 (103)
||||||..++|||
T Consensus 108 sYsmmGt~~QpGi 120 (1714)
T KOG0241|consen 108 SYSMMGTAEQPGI 120 (1714)
T ss_pred eeEeeccCCCCCc
Confidence 9999999999997
No 7
>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and lo
Probab=99.92 E-value=3.8e-25 Score=164.86 Aligned_cols=62 Identities=31% Similarity=0.512 Sum_probs=60.2
Q ss_pred CceEEeceEEecCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEeccCCCCCCC
Q psy12526 35 PKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLNGNGPFPLI 103 (103)
Q Consensus 35 ~~~F~fd~vf~s~~~~~~~~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~G~~~~pGi 103 (103)
.+.|.||+||+ +.++|++||+.+++|+|+.+++|+|+||||||||||||||||+|+.+++||
T Consensus 50 ~~~f~FD~vf~-------~~~~q~~vf~~~~~plv~~~~~G~n~~i~ayGqtGSGKTyTm~G~~~~~Gl 111 (322)
T cd01367 50 KHTFRFDYVFD-------EAVTNEEVYRSTVKPLIPHVFEGGVATCFAYGQTGSGKTYTMLGDENQEGL 111 (322)
T ss_pred CceEecceEEC-------CCCCHHHHHHHHHHHHHHHHhCCCceEEEeccCCCCCCceEecCcCCcCcc
Confidence 58999999999 899999999999999999999999999999999999999999999999997
No 8
>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second
Probab=99.92 E-value=1.3e-24 Score=162.96 Aligned_cols=59 Identities=41% Similarity=0.849 Sum_probs=56.1
Q ss_pred CCceEEeceEEecCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEeccCCC
Q psy12526 34 PPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLNGNGP 99 (103)
Q Consensus 34 ~~~~F~fd~vf~s~~~~~~~~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~G~~~ 99 (103)
+.+.|.||+||| +.++|++||+.++.|+|+.+++|||+||||||||||||||||+|+..
T Consensus 39 ~~~~f~FD~vf~-------~~~~q~~vy~~~~~p~v~~~~~G~n~ti~aYGqTGSGKTyTm~G~~~ 97 (337)
T cd01373 39 PPRMFTFDHVAD-------SNTNQEDVFQSVGKPLVEDCLSGYNGSIFAYGQTGSGKTYTMMGPSS 97 (337)
T ss_pred CCcEEeCCeEeC-------CCCCHHHHHHHHHHHHHHHHhCCCceeEEEeCCCCCCceEEecCCCC
Confidence 368999999999 89999999999999999999999999999999999999999999764
No 9
>KOG0243|consensus
Probab=99.91 E-value=9.3e-25 Score=179.16 Aligned_cols=62 Identities=39% Similarity=0.619 Sum_probs=58.3
Q ss_pred CceEEeceEEecCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEecc--------CCCCCCC
Q psy12526 35 PKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLNG--------NGPFPLI 103 (103)
Q Consensus 35 ~~~F~fd~vf~s~~~~~~~~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~G--------~~~~pGi 103 (103)
.|.|+||+||+ |.+.|++||+.++.|+|..++.|||||||||||||+||||||.| .++.+||
T Consensus 94 ~k~ftFDkVFG-------pes~Q~d~Y~~~v~p~i~eVl~GyNCTIFAYGQTGTGKTyTMeG~~~~~~g~l~~~aGI 163 (1041)
T KOG0243|consen 94 DKTFTFDKVFG-------PESQQEDLYDQAVSPIIKEVLEGYNCTIFAYGQTGTGKTYTMEGGERKKNGELPSEAGI 163 (1041)
T ss_pred cceeecceeeC-------cchhHHHHHHHHHHHHHHHHhccCCceEEEecCCCCCceeeeecCcccccCCCCccCCc
Confidence 68999999999 89999999999999999999999999999999999999999999 5666775
No 10
>KOG0239|consensus
Probab=99.91 E-value=1.3e-24 Score=174.45 Aligned_cols=73 Identities=37% Similarity=0.714 Sum_probs=62.0
Q ss_pred EEecCCCCCCCCCceEEeceEEecCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEecc-CCCCC
Q psy12526 23 YLTGTGRSHLKPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLNG-NGPFP 101 (103)
Q Consensus 23 ~~~~~~~~~~~~~~~F~fd~vf~s~~~~~~~~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~G-~~~~p 101 (103)
.+..|........+.|.||+||. |.++|++||.++ .|+|.++++|||+||||||||||||||||.| +.+++
T Consensus 347 ~~~~~~~~~~~~~~~f~fdkVf~-------p~~sQ~~VF~e~-~~lv~S~lDGYnVCIFAYGQTGSGKTyTM~G~~~~~~ 418 (670)
T KOG0239|consen 347 QVDSPDKGDKLEPQSFKFDKVFG-------PLASQDDVFEEV-SPLVQSALDGYNVCIFAYGQTGSGKTYTMSGPTPEDP 418 (670)
T ss_pred EeecCCCCCCCccccceeeeecC-------CcccHHHHHHHH-HHHHHHHhcCcceeEEEecccCCCccccccCCCcccC
Confidence 33334333333345699999998 999999999997 6999999999999999999999999999999 79999
Q ss_pred CC
Q psy12526 102 LI 103 (103)
Q Consensus 102 Gi 103 (103)
||
T Consensus 419 Gi 420 (670)
T KOG0239|consen 419 GI 420 (670)
T ss_pred Cc
Confidence 97
No 11
>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through
Probab=99.91 E-value=4.5e-24 Score=158.85 Aligned_cols=63 Identities=29% Similarity=0.470 Sum_probs=60.6
Q ss_pred CCceEEeceEEecCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEeccCCCCCCC
Q psy12526 34 PPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLNGNGPFPLI 103 (103)
Q Consensus 34 ~~~~F~fd~vf~s~~~~~~~~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~G~~~~pGi 103 (103)
.++.|.||+||+ +.++|++||+.++.|+|+.+++|+|+||||||||||||||||+|+..++||
T Consensus 45 ~~~~f~FD~vf~-------~~~~q~~vy~~~~~plv~~~~~G~n~~i~ayG~tgSGKTyTm~G~~~~~Gl 107 (319)
T cd01376 45 ETKKYQFDAFYG-------TECTQEDIFSREVKPIVPHLLSGQNATVFAYGSTGAGKTHTMLGDPNEPGL 107 (319)
T ss_pred CccEEecCeEEC-------CCCCHHHHHHHHHHHHHHHHhCCCceEEEEECCCCCCCcEEEeCCcCccch
Confidence 468999999999 889999999999999999999999999999999999999999999999997
No 12
>KOG0242|consensus
Probab=99.90 E-value=2.4e-24 Score=173.21 Aligned_cols=62 Identities=35% Similarity=0.689 Sum_probs=60.3
Q ss_pred CceEEeceEEecCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEeccCCCCCCC
Q psy12526 35 PKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLNGNGPFPLI 103 (103)
Q Consensus 35 ~~~F~fd~vf~s~~~~~~~~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~G~~~~pGi 103 (103)
+..|.||+||+ +.++|++||+..++|+|+++++|||+||||||||||||||||+|..++|||
T Consensus 52 ~~~y~FD~VF~-------~~~t~~~VYe~~tkpiv~~~l~G~N~TVFAYG~TgSGKTyTM~G~~~~PGi 113 (675)
T KOG0242|consen 52 PEKYEFDRVFG-------EESTQEDVYERTTKPLLLSVLEGFNATVFAYGQTGSGKTYTMSGSEDDPGI 113 (675)
T ss_pred ccceeeeeecC-------CCCCHHHHHHhccHHHHHHHhcCcccceeeecCCCCCCceEEeccCCCCCe
Confidence 58999999999 889999999999999999999999999999999999999999999999997
No 13
>cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain
Probab=99.90 E-value=8.6e-24 Score=158.14 Aligned_cols=78 Identities=31% Similarity=0.598 Sum_probs=67.3
Q ss_pred CCEEEEecCCCCCCCCCceEEeceEEecCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEeccCC
Q psy12526 19 KQTTYLTGTGRSHLKPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLNGNG 98 (103)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~F~fd~vf~s~~~~~~~~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~G~~ 98 (103)
..++.+..+.......++.|.||+||+ +.++|++||+.++.|+|+.+++|+|+||||||+|||||||||+|+.
T Consensus 31 ~~~v~~~~~~~~~~~~~~~f~fd~vf~-------~~~~q~~vy~~~~~plv~~~~~G~n~~i~ayG~tgSGKTyTm~G~~ 103 (333)
T cd01371 31 RGQVTVHNPKADAKEPPKVFTFDAVYD-------PNSTQEDVYNETARPLVDSVLEGYNGTIFAYGQTGTGKTFTMEGVR 103 (333)
T ss_pred CCEEEEeCCcccccCCCceeeeccccC-------CCccHHHHHHHHHHHHHHHHhCCCceeEEecCCCCCCCcEeecCCC
Confidence 344555555443344678999999999 8899999999999999999999999999999999999999999998
Q ss_pred C---CCCC
Q psy12526 99 P---FPLI 103 (103)
Q Consensus 99 ~---~pGi 103 (103)
. ++||
T Consensus 104 ~~~~~~Gl 111 (333)
T cd01371 104 EPPELRGI 111 (333)
T ss_pred Ccccccch
Confidence 7 8886
No 14
>cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to
Probab=99.90 E-value=1e-23 Score=156.90 Aligned_cols=63 Identities=32% Similarity=0.692 Sum_probs=60.8
Q ss_pred CCceEEeceEEecCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEeccCCCCCCC
Q psy12526 34 PPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLNGNGPFPLI 103 (103)
Q Consensus 34 ~~~~F~fd~vf~s~~~~~~~~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~G~~~~pGi 103 (103)
..+.|.||+||+ +.++|++||+.++.|+|+.+++|+|+||||||+|||||||||+|+..++||
T Consensus 38 ~~~~f~fd~vf~-------~~~~q~~vy~~~~~p~v~~~l~G~n~~i~ayG~tgSGKT~T~~G~~~~~Gl 100 (321)
T cd01374 38 PGQSFTFDRVFG-------GESTNREVYERIAKPVVRSALEGYNGTIFAYGQTSSGKTFTMSGDEQEPGI 100 (321)
T ss_pred CCeEEecCeEEC-------CCCCHHHHHHHHHHHHHHHHHCCCceeEEeecCCCCCCceeccCCCCCCch
Confidence 469999999999 889999999999999999999999999999999999999999999999996
No 15
>PLN03188 kinesin-12 family protein; Provisional
Probab=99.90 E-value=7.4e-24 Score=175.98 Aligned_cols=58 Identities=34% Similarity=0.669 Sum_probs=55.2
Q ss_pred CCceEEeceEEecCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEeccCC
Q psy12526 34 PPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLNGNG 98 (103)
Q Consensus 34 ~~~~F~fd~vf~s~~~~~~~~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~G~~ 98 (103)
..+.|.||+||+ +.++|++||+.++.|+|+.+++|||+||||||||||||||||+|+.
T Consensus 130 ~~qtFtFD~VFd-------p~aTQedVFe~vv~PLV~svLdGyNaTIFAYGQTGSGKTYTM~G~~ 187 (1320)
T PLN03188 130 NGQTFTFDSIAD-------PESTQEDIFQLVGAPLVENCLAGFNSSVFAYGQTGSGKTYTMWGPA 187 (1320)
T ss_pred eCcEEeCCeeeC-------CCCCHHHHHHHHHHHHHHHHhcCCcceeecCCCCCCCCCEeeCCCC
Confidence 458999999999 8999999999999999999999999999999999999999999963
No 16
>cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-c
Probab=99.89 E-value=3.5e-23 Score=154.19 Aligned_cols=63 Identities=40% Similarity=0.699 Sum_probs=59.9
Q ss_pred CCceEEeceEEecCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEeccCCC---CCCC
Q psy12526 34 PPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLNGNGP---FPLI 103 (103)
Q Consensus 34 ~~~~F~fd~vf~s~~~~~~~~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~G~~~---~pGi 103 (103)
..+.|.||+||| +.++|++||+.++.|+|+.+++|+|+||||||+|||||||||+|+.. ++||
T Consensus 41 ~~~~f~FD~vf~-------~~~~q~~vy~~~~~~~v~~~~~G~n~~i~ayG~tgSGKT~Tm~G~~~~~~~~Gi 106 (325)
T cd01369 41 DGKTFSFDRVFP-------PNTTQEDVYNFVAKPIVDDVLNGYNGTIFAYGQTGSGKTYTMEGPPGDPELKGI 106 (325)
T ss_pred CceEEEcCeEEC-------CCCCHHHHHHHHHHHHHHHHHcCccceEEEeCCCCCCceEEecCCCCccccCCh
Confidence 468999999999 89999999999999999999999999999999999999999999988 7786
No 17
>cd00106 KISc Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coil
Probab=99.89 E-value=6.5e-23 Score=152.36 Aligned_cols=77 Identities=36% Similarity=0.635 Sum_probs=68.4
Q ss_pred CEEEEecCCCCCCCCCceEEeceEEecCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEeccCCC
Q psy12526 20 QTTYLTGTGRSHLKPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLNGNGP 99 (103)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~F~fd~vf~s~~~~~~~~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~G~~~ 99 (103)
+++++..+........+.|.||+||+ +.++|++||+.++.|+|+.+++|+|+||||||+|||||||||+|+.+
T Consensus 29 ~~v~~~~~~~~~~~~~~~f~fd~vf~-------~~~~q~~v~~~~~~~~v~~~~~G~~~~i~~yG~tgSGKT~tl~G~~~ 101 (328)
T cd00106 29 KTVTLTPPKDGRKAGPKSFTFDHVFD-------PNSTQEDVYETTAKPLVESVLEGYNGTIFAYGQTGSGKTYTMFGSPK 101 (328)
T ss_pred CEEEEecCccccCcCceEEECCeEEc-------CCCCHHHHHHHHHHHHHHHHhCCCceeEEEecCCCCCCeEEecCCCC
Confidence 56666655543444579999999999 88999999999999999999999999999999999999999999999
Q ss_pred CCCC
Q psy12526 100 FPLI 103 (103)
Q Consensus 100 ~pGi 103 (103)
++||
T Consensus 102 ~~Gl 105 (328)
T cd00106 102 DPGI 105 (328)
T ss_pred CCch
Confidence 9997
No 18
>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain,
Probab=99.89 E-value=1.8e-23 Score=156.46 Aligned_cols=95 Identities=29% Similarity=0.395 Sum_probs=71.1
Q ss_pred CCccccccccCccccccCC--EEEEecCC--CCCCCCCceEEeceEEecCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCc
Q psy12526 2 PSRDTTRVYLPTAKQVRKQ--TTYLTGTG--RSHLKPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYN 77 (103)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~--~~~~~~~~~F~fd~vf~s~~~~~~~~~~q~~v~~~~~~~lv~~~~~G~n 77 (103)
|.+-.+|+++....+..+. .++...+. .......+.|.||+||| +.++|++||+.++.|+|+.+++|+|
T Consensus 2 ~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~~~~~f~FD~vf~-------~~~~q~~vy~~~~~plv~~~~~G~n 74 (341)
T cd01372 2 SVRVAVRVRPLLPKELLEGCQVCVSVVPGEPQVTVGTDKSFTFDYVFD-------PSTSQEEVYNTCVAPLVDGLFEGYN 74 (341)
T ss_pred CeEEEEECCCCCchhcccCCCeEEEEeCCCCEEEecCCcEEeccccCC-------CCCCHHHHHHHHHHHHHHHHhCCCc
Confidence 3444556666554443321 22222222 22223368999999999 8899999999999999999999999
Q ss_pred EEEEeecCCCCCCceEeccCC------CCCCC
Q psy12526 78 ACIFAYGQTGEKTNYLLNGNG------PFPLI 103 (103)
Q Consensus 78 ~ti~aYGqtgSGKT~Tm~G~~------~~pGi 103 (103)
+||||||||||||||||+|+. .++||
T Consensus 75 ~~i~ayG~tgSGKT~Tm~G~~~~~~~~~~~Gi 106 (341)
T cd01372 75 ATVLAYGQTGSGKTYTMGTAFTASEDEEEVGI 106 (341)
T ss_pred cceeeecCCCCCCcEEecCCCccccccccCCh
Confidence 999999999999999999984 46776
No 19
>cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil d
Probab=99.89 E-value=6.4e-23 Score=154.26 Aligned_cols=60 Identities=40% Similarity=0.658 Sum_probs=56.5
Q ss_pred CCceEEeceEEecCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEeccCCCC
Q psy12526 34 PPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLNGNGPF 100 (103)
Q Consensus 34 ~~~~F~fd~vf~s~~~~~~~~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~G~~~~ 100 (103)
..+.|.||+||+ +.++|++||+.++.|+|+.+++|+|+||||||+|||||||||+|....
T Consensus 46 ~~~~f~Fd~vf~-------~~~~q~~vy~~~~~plv~~~~~G~n~~i~ayG~tgSGKTyTl~G~~~~ 105 (352)
T cd01364 46 STKTYTFDKVFG-------PEADQIEVYSQVVSPILDEVLMGYNCTIFAYGQTGTGKTYTMEGDRTD 105 (352)
T ss_pred cceeEeccccCC-------CCCCHHHHHHHHHHHHHHHHhCCCeEEEEECCCCCCCCcEEecCCCcc
Confidence 568999999999 899999999999999999999999999999999999999999998543
No 20
>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80
Probab=99.89 E-value=3.8e-23 Score=154.80 Aligned_cols=62 Identities=39% Similarity=0.695 Sum_probs=57.7
Q ss_pred CCceEEeceEEecCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEeccCC---CCCCC
Q psy12526 34 PPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLNGNG---PFPLI 103 (103)
Q Consensus 34 ~~~~F~fd~vf~s~~~~~~~~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~G~~---~~pGi 103 (103)
..+.|.||+||+ + ++|++||+.++.|+|+++++|+|+||||||||||||||||+|+. .++||
T Consensus 46 ~~~~f~FD~vf~-------~-~~q~~vy~~~~~p~v~~~~~G~n~~i~ayG~tgSGKTyTm~G~~~~~~~~Gl 110 (334)
T cd01375 46 EDFSFKFDGVFH-------N-ASQEEVYETVAKPVVDSALDGYNGTIFAYGQTGAGKTFTMTGGTESYKDRGL 110 (334)
T ss_pred CceEEEcCcccC-------C-CCHHHHHHHHHHHHHHHHhCCCccceeeecCCCCCCeEEccCCCCcccCCch
Confidence 457899999998 7 99999999999999999999999999999999999999999976 46776
No 21
>PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. The kinesin motor domain is located in the N-terminal part of most of the above proteins, with the exception of KAR3, klpA, and ncd where it is located in the C-terminal section. The kinesin motor domain contains about 330 amino acids. An ATP-binding motif of type A is found near position 80 to 90, the C-terminal half of the domain is involved in microtubule-binding.; GO: 0003777 microtubule motor activity, 0005524 ATP binding, 0007018 microtubule-based movement; PDB: 3NWN_A 2Y5W_A 2Y65_C 3BFN_A 2WBE_C 2ZFL_A 2ZFI_A 1I6I_A 2ZFM_A 1IA0_K ....
Probab=99.87 E-value=1.1e-22 Score=151.45 Aligned_cols=64 Identities=39% Similarity=0.683 Sum_probs=59.8
Q ss_pred CCCceEEeceEEecCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEeccC--CCCCCC
Q psy12526 33 KPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLNGN--GPFPLI 103 (103)
Q Consensus 33 ~~~~~F~fd~vf~s~~~~~~~~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~G~--~~~pGi 103 (103)
...+.|.||+||| +.++|++||+.++.|+|+.+++|+|+||||||+|||||||||+|+ ..++||
T Consensus 38 ~~~~~f~FD~vf~-------~~~~q~~vy~~~~~~~v~~~l~G~n~~i~ayG~tgSGKT~Tm~G~~~~~~~Gl 103 (335)
T PF00225_consen 38 QKEKSFRFDRVFD-------EDATQEDVYEEVVSPLVDSVLDGYNATIFAYGQTGSGKTYTMFGSNDPSEPGL 103 (335)
T ss_dssp TEEEEEEESEEEE-------TTSTHHHHHHHHTHHHHHHHHTT-EEEEEEEESTTSSHHHHHTBSTSTTTBSH
T ss_pred CCceEEEcCeEEC-------CCCCHHHHHHHHHHHHHHHhhcCCceEEEeeccccccccccccccccccccch
Confidence 3568999999999 899999999999999999999999999999999999999999999 889886
No 22
>cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for mi
Probab=99.87 E-value=1.1e-21 Score=146.33 Aligned_cols=63 Identities=44% Similarity=0.771 Sum_probs=59.3
Q ss_pred CCCceEEeceEEecCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEeccCCCCCCC
Q psy12526 33 KPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLNGNGPFPLI 103 (103)
Q Consensus 33 ~~~~~F~fd~vf~s~~~~~~~~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~G~~~~pGi 103 (103)
...+.|.||+||+ +.++|++||+.+ .|+|+.+++|+|+||||||+|||||||||+|..+++||
T Consensus 42 ~~~~~f~fD~vf~-------~~~~q~~v~~~v-~p~v~~~~~G~~~~i~ayG~tgSGKT~tl~G~~~~~Gl 104 (329)
T cd01366 42 GKKKSFSFDRVFD-------PDASQEDVFEEV-SPLVQSALDGYNVCIFAYGQTGSGKTYTMEGPPENPGI 104 (329)
T ss_pred CCceEEecCEEEC-------CCCCHHHHHHHH-HHHHHHHhCCCceEEEEeCCCCCCCcEEecCCCCCCCc
Confidence 3568999999999 899999999985 89999999999999999999999999999999999997
No 23
>KOG0240|consensus
Probab=99.85 E-value=1.3e-21 Score=152.84 Aligned_cols=59 Identities=42% Similarity=0.777 Sum_probs=56.7
Q ss_pred ceEEeceEEecCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEeccCCCCC
Q psy12526 36 KTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLNGNGPFP 101 (103)
Q Consensus 36 ~~F~fd~vf~s~~~~~~~~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~G~~~~p 101 (103)
+.|.||+||. +.++|++||+.++.|+|+.+|.|||+||||||||||||||||.|...+|
T Consensus 49 ~~y~FDrVF~-------pnatQe~Vy~~~a~~Iv~dVL~GYNGTvfaYGqT~sGKTytm~G~~~d~ 107 (607)
T KOG0240|consen 49 KTYVFDRVFS-------PNATQEDVYEFAAKPIVDDVLLGYNGTVFAYGQTGSGKTYTMEGIGHDP 107 (607)
T ss_pred ccceeeeecC-------CCccHHHHHHHHHHHHHHHHhcccceeEEEecCCCCCcceeecccCCCh
Confidence 8999999998 9999999999999999999999999999999999999999999998744
No 24
>smart00129 KISc Kinesin motor, catalytic domain. ATPase. Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.
Probab=99.85 E-value=5.1e-21 Score=142.76 Aligned_cols=64 Identities=45% Similarity=0.735 Sum_probs=61.0
Q ss_pred CCCceEEeceEEecCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEeccCCCCCCC
Q psy12526 33 KPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLNGNGPFPLI 103 (103)
Q Consensus 33 ~~~~~F~fd~vf~s~~~~~~~~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~G~~~~pGi 103 (103)
...+.|.||+||+ +.++|++||+.++.|+|+.+++|+|+||||||+|||||||||+|+.+++||
T Consensus 43 ~~~~~f~fD~vf~-------~~~~q~~v~~~~~~p~v~~~~~G~~~~i~~yG~tgSGKT~tl~G~~~~~Gl 106 (335)
T smart00129 43 KEEKKFTFDKVFG-------ATASQEDVFEETAAPLVDSVLEGYNATIFAYGQTGSGKTYTMSGTPDSPGI 106 (335)
T ss_pred CCCeEEecCEEEC-------CCCChHHHHHHHHHHHHHHHhcCCceeEEEeCCCCCCCceEecCCCCCCCH
Confidence 3568999999998 889999999999999999999999999999999999999999999999996
No 25
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=99.80 E-value=8.9e-20 Score=144.82 Aligned_cols=62 Identities=39% Similarity=0.669 Sum_probs=59.6
Q ss_pred CceEEeceEEecCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEeccCCCCCCC
Q psy12526 35 PKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLNGNGPFPLI 103 (103)
Q Consensus 35 ~~~F~fd~vf~s~~~~~~~~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~G~~~~pGi 103 (103)
...|.||+||+ +.++|++||+..+.|+++.++.|||||||||||||+||||||.|..+.+||
T Consensus 55 ~~~~~fdkvf~-------~~~~q~~v~e~~~~~l~~~~l~g~N~TvfayGqTgsgKtyt~~G~~~~~Gi 116 (568)
T COG5059 55 EGTYAFDKVFG-------PSATQEDVYEETIKPLIDSLLLGYNCTVFAYGQTGSGKTYTMSGTEEEPGI 116 (568)
T ss_pred ceEEEEeeccC-------CCCcHHHHHHHhhhhHHHHHHhcccceEEEEcccCCCceeEeecCccccch
Confidence 46799999999 889999999999999999999999999999999999999999999999997
No 26
>KOG0246|consensus
Probab=99.79 E-value=2.1e-19 Score=140.84 Aligned_cols=56 Identities=36% Similarity=0.606 Sum_probs=54.0
Q ss_pred CceEEeceEEecCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEeccC
Q psy12526 35 PKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLNGN 97 (103)
Q Consensus 35 ~~~F~fd~vf~s~~~~~~~~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~G~ 97 (103)
...|.||++|+ ..+++++||..+++|||..+|+|--+|+||||||||||||||.|+
T Consensus 257 n~~F~FDyaFD-------e~~sNe~VYrfTa~PlV~~IF~~G~ATCFAYGQTGSGKT~TMggd 312 (676)
T KOG0246|consen 257 NQKFRFDYAFD-------ESASNELVYRFTAKPLVKTIFEGGMATCFAYGQTGSGKTYTMGGD 312 (676)
T ss_pred hceEEEeeecc-------cccchHHHHHHhhhHHHHHHHhCCceeeeeeccCCCCceeecccc
Confidence 57999999999 899999999999999999999999999999999999999999886
No 27
>KOG0247|consensus
Probab=99.73 E-value=7.1e-18 Score=135.00 Aligned_cols=63 Identities=30% Similarity=0.522 Sum_probs=60.9
Q ss_pred CCceEEeceEEecCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEeccCCCCCCC
Q psy12526 34 PPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLNGNGPFPLI 103 (103)
Q Consensus 34 ~~~~F~fd~vf~s~~~~~~~~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~G~~~~pGi 103 (103)
..+.|.|.+||+ +.++|.+||+.++.|+|..++.|.|..+|.||-|||||||||.|+...+||
T Consensus 79 ~e~~fsFt~VF~-------p~~tQ~dvF~~~~~plV~dlLkgqn~LlFTyGVTgSGKTYTm~G~~~~~GI 141 (809)
T KOG0247|consen 79 MEKKFSFTKVFG-------PSVTQADVFDTTVAPLVKDLLKGQNSLLFTYGVTGSGKTYTMTGTPDRPGI 141 (809)
T ss_pred eeeEeeeeeecC-------CCccHHHHHHHHhHHHHHHHHcccceeEEEeeccCCCceEEeecCCCCCCc
Confidence 468999999998 899999999999999999999999999999999999999999999999997
No 28
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=99.67 E-value=5.6e-17 Score=112.61 Aligned_cols=43 Identities=47% Similarity=0.862 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEeccCCCCCCC
Q psy12526 60 VFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLNGNGPFPLI 103 (103)
Q Consensus 60 v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~G~~~~pGi 103 (103)
||+.++ |+|..+++|+|+||||||||||||||||+|..+++||
T Consensus 8 vf~~~~-~~v~~~~~G~n~~i~~yG~tGsGKT~Tm~G~~~~~Gi 50 (186)
T cd01363 8 VFRDVG-PLLQSALDGYNVCIFAYGQTGSGKTYTMEGKREGAGI 50 (186)
T ss_pred HHHHHH-HHHHHHhCCcceeEEEECCCCCcceEecCCCCCCCCc
Confidence 999999 9999999999999999999999999999999999986
No 29
>KOG0244|consensus
Probab=99.64 E-value=2.4e-16 Score=128.61 Aligned_cols=62 Identities=32% Similarity=0.671 Sum_probs=56.7
Q ss_pred CCCCCCCceEEeceEEecCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEeccC
Q psy12526 29 RSHLKPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLNGN 97 (103)
Q Consensus 29 ~~~~~~~~~F~fd~vf~s~~~~~~~~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~G~ 97 (103)
.+.....++|+||+||. ....|.++|+.+++|+++.+++|||+|++|||||||||||||.+.
T Consensus 25 qv~ig~~~s~t~d~v~~-------~~~~Q~~~~e~~V~~l~~~lf~gynatvlaygQtgsgkTytmgt~ 86 (913)
T KOG0244|consen 25 QVAIGKDASFTYDKVFL-------DLESQKEVYESCVRPLREKLFAGYNATVLAYGQTGSGKTYTMGTN 86 (913)
T ss_pred ceeecCCcceeeeeecc-------CchHHHHHHHHHHHHHHHHHhhhhcceeeeecccCCCceeecccc
Confidence 33445678999999998 777899999999999999999999999999999999999999887
No 30
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=96.43 E-value=0.002 Score=45.80 Aligned_cols=50 Identities=30% Similarity=0.494 Sum_probs=30.9
Q ss_pred ceEEeceEEecCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEec
Q psy12526 36 KTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLN 95 (103)
Q Consensus 36 ~~F~fd~vf~s~~~~~~~~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~ 95 (103)
..|+||.-. ...+++..+..+ ..+.+.--..+|. ++-||.+|+||||-|.
T Consensus 3 ~~~tFdnfv--------~g~~N~~a~~~~-~~ia~~~~~~~~~-l~l~G~~G~GKTHLL~ 52 (219)
T PF00308_consen 3 PKYTFDNFV--------VGESNELAYAAA-KAIAENPGERYNP-LFLYGPSGLGKTHLLQ 52 (219)
T ss_dssp TT-SCCCS----------TTTTHHHHHHH-HHHHHSTTTSSSE-EEEEESTTSSHHHHHH
T ss_pred CCCccccCC--------cCCcHHHHHHHH-HHHHhcCCCCCCc-eEEECCCCCCHHHHHH
Confidence 468888755 234566677544 3455542233554 7889999999999654
No 31
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=95.96 E-value=0.0074 Score=49.23 Aligned_cols=51 Identities=25% Similarity=0.414 Sum_probs=33.4
Q ss_pred CceEEeceEEecCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEec
Q psy12526 35 PKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLN 95 (103)
Q Consensus 35 ~~~F~fd~vf~s~~~~~~~~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~ 95 (103)
...|+||..+- ..+++..|..+ ..+++..-..+|. ||-||.+|+||||-+.
T Consensus 282 ~~~~TFDnFvv--------G~sN~~A~aaa-~avae~~~~~~Np-L~LyG~sGsGKTHLL~ 332 (617)
T PRK14086 282 NPKYTFDTFVI--------GASNRFAHAAA-VAVAEAPAKAYNP-LFIYGESGLGKTHLLH 332 (617)
T ss_pred CCCCCHhhhcC--------CCccHHHHHHH-HHHHhCccccCCc-EEEECCCCCCHHHHHH
Confidence 46788877553 23444555443 3455544446775 7899999999999765
No 32
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=95.92 E-value=0.0076 Score=48.63 Aligned_cols=48 Identities=17% Similarity=0.256 Sum_probs=33.7
Q ss_pred ceEEeceEEecCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEec
Q psy12526 36 KTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLN 95 (103)
Q Consensus 36 ~~F~fd~vf~s~~~~~~~~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~ 95 (103)
+.|....-|. |.-+|- ..+..|++.+-+|.---+ -.|.|||||||||.
T Consensus 3 ~~F~l~s~f~-------PaGDQP----~AI~~Lv~gi~~g~~~Qt-LLGvTGSGKTfT~A 50 (663)
T COG0556 3 KPFKLHSPFK-------PAGDQP----EAIAELVEGIENGLKHQT-LLGVTGSGKTFTMA 50 (663)
T ss_pred CceEeccCCC-------CCCCcH----HHHHHHHHHHhcCceeeE-EeeeccCCchhHHH
Confidence 3466666665 677774 445677777777765443 37999999999985
No 33
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.90 E-value=0.004 Score=47.15 Aligned_cols=30 Identities=20% Similarity=0.223 Sum_probs=26.9
Q ss_pred HHHHHHhhCCCcEEEEeecCCCCCCceEec
Q psy12526 66 RDILDNAFQGYNACIFAYGQTGEKTNYLLN 95 (103)
Q Consensus 66 ~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~ 95 (103)
.+++..+.+--++.|+.-|+|||||+.||-
T Consensus 114 P~i~~~~~~~~~GLILVTGpTGSGKSTTlA 143 (353)
T COG2805 114 PPIVRELAESPRGLILVTGPTGSGKSTTLA 143 (353)
T ss_pred CHHHHHHHhCCCceEEEeCCCCCcHHHHHH
Confidence 677888888889999999999999999874
No 34
>PRK06620 hypothetical protein; Validated
Probab=95.43 E-value=0.015 Score=41.27 Aligned_cols=51 Identities=16% Similarity=0.298 Sum_probs=33.7
Q ss_pred CceEEeceEEecCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCc---EEEEeecCCCCCCceEecc
Q psy12526 35 PKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYN---ACIFAYGQTGEKTNYLLNG 96 (103)
Q Consensus 35 ~~~F~fd~vf~s~~~~~~~~~~q~~v~~~~~~~lv~~~~~G~n---~ti~aYGqtgSGKT~Tm~G 96 (103)
...|+||.-.. ..+++..|..+. .+.+ .. ++| -.++-||..|+||||-+..
T Consensus 10 ~~~~tfd~Fvv--------g~~N~~a~~~~~-~~~~-~~-~~~~~~~~l~l~Gp~G~GKThLl~a 63 (214)
T PRK06620 10 SSKYHPDEFIV--------SSSNDQAYNIIK-NWQC-GF-GVNPYKFTLLIKGPSSSGKTYLTKI 63 (214)
T ss_pred CCCCCchhhEe--------cccHHHHHHHHH-HHHH-cc-ccCCCcceEEEECCCCCCHHHHHHH
Confidence 45688888774 345666776654 3332 11 333 3588999999999997754
No 35
>PRK09087 hypothetical protein; Validated
Probab=95.37 E-value=0.017 Score=41.26 Aligned_cols=48 Identities=13% Similarity=0.102 Sum_probs=30.9
Q ss_pred CceEEeceEEecCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEec
Q psy12526 35 PKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLN 95 (103)
Q Consensus 35 ~~~F~fd~vf~s~~~~~~~~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~ 95 (103)
+..|+||.-+ ...++..+|..+ .......|-.++-||.+||||||-+.
T Consensus 15 ~~~~~~~~Fi--------~~~~N~~a~~~l-----~~~~~~~~~~l~l~G~~GsGKThLl~ 62 (226)
T PRK09087 15 DPAYGRDDLL--------VTESNRAAVSLV-----DHWPNWPSPVVVLAGPVGSGKTHLAS 62 (226)
T ss_pred CCCCChhcee--------ecCchHHHHHHH-----HhcccCCCCeEEEECCCCCCHHHHHH
Confidence 3567888766 334456577643 22222235557889999999999765
No 36
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.02 E-value=0.013 Score=46.65 Aligned_cols=30 Identities=20% Similarity=0.158 Sum_probs=25.4
Q ss_pred HHHHHhhCCCcEEEEeecCCCCCCceEecc
Q psy12526 67 DILDNAFQGYNACIFAYGQTGEKTNYLLNG 96 (103)
Q Consensus 67 ~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~G 96 (103)
..+..+++--++-|+.-|+||||||.||+.
T Consensus 248 ~~~~~~~~~p~GliLvTGPTGSGKTTTLY~ 277 (500)
T COG2804 248 ARLLRLLNRPQGLILVTGPTGSGKTTTLYA 277 (500)
T ss_pred HHHHHHHhCCCeEEEEeCCCCCCHHHHHHH
Confidence 455677788889999999999999999974
No 37
>PRK06893 DNA replication initiation factor; Validated
Probab=94.83 E-value=0.029 Score=39.93 Aligned_cols=24 Identities=13% Similarity=0.223 Sum_probs=19.4
Q ss_pred hhCCCcEEEEeecCCCCCCceEec
Q psy12526 72 AFQGYNACIFAYGQTGEKTNYLLN 95 (103)
Q Consensus 72 ~~~G~n~ti~aYGqtgSGKT~Tm~ 95 (103)
+-..+|-.++-||.+|+||||-+.
T Consensus 34 ~~~~~~~~l~l~G~~G~GKThL~~ 57 (229)
T PRK06893 34 FIDLQQPFFYIWGGKSSGKSHLLK 57 (229)
T ss_pred hhccCCCeEEEECCCCCCHHHHHH
Confidence 335677788999999999999654
No 38
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=94.76 E-value=0.016 Score=38.41 Aligned_cols=37 Identities=8% Similarity=0.049 Sum_probs=22.6
Q ss_pred CHHHHHHHHHHHHHHHhhCC-CcEEEEeecCCCCCCceEecc
Q psy12526 56 SQEKVFDALGRDILDNAFQG-YNACIFAYGQTGEKTNYLLNG 96 (103)
Q Consensus 56 ~q~~v~~~~~~~lv~~~~~G-~n~ti~aYGqtgSGKT~Tm~G 96 (103)
-|.++...+. +.+-.. .+..++..+.||||||++|..
T Consensus 7 ~Q~~ai~~i~----~~~~~~~~~~~~ll~~~tGsGKT~~~~~ 44 (184)
T PF04851_consen 7 YQQEAIARII----NSLENKKEERRVLLNAPTGSGKTIIALA 44 (184)
T ss_dssp HHHHHHHHHH----HHHHTTSGCSEEEEEESTTSSHHHHHHH
T ss_pred HHHHHHHHHH----HHHHhcCCCCCEEEEECCCCCcChhhhh
Confidence 4555555443 333333 234455678999999998863
No 39
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=94.54 E-value=0.03 Score=35.12 Aligned_cols=26 Identities=15% Similarity=0.137 Sum_probs=17.7
Q ss_pred HHHhhCCCcEEEEeecCCCCCCceEe
Q psy12526 69 LDNAFQGYNACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 69 v~~~~~G~n~ti~aYGqtgSGKT~Tm 94 (103)
...+.......++-+|.+|+|||+.+
T Consensus 11 ~~~~~~~~~~~v~i~G~~G~GKT~l~ 36 (151)
T cd00009 11 REALELPPPKNLLLYGPPGTGKTTLA 36 (151)
T ss_pred HHHHhCCCCCeEEEECCCCCCHHHHH
Confidence 33333333446788999999999754
No 40
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=94.42 E-value=0.032 Score=41.76 Aligned_cols=39 Identities=18% Similarity=0.415 Sum_probs=25.8
Q ss_pred CCHHHHHHHHHHHHHHHhhC-CCcEEEEeecCCCCCCceEe
Q psy12526 55 ASQEKVFDALGRDILDNAFQ-GYNACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 55 ~~q~~v~~~~~~~lv~~~~~-G~n~ti~aYGqtgSGKT~Tm 94 (103)
...++-.+.+.. .+..++. +....++-||+.|+|||+++
T Consensus 18 ~gRe~e~~~l~~-~l~~~~~~~~~~~i~I~G~~GtGKT~l~ 57 (365)
T TIGR02928 18 VHRDEQIEELAK-ALRPILRGSRPSNVFIYGKTGTGKTAVT 57 (365)
T ss_pred CCcHHHHHHHHH-HHHHHHcCCCCCcEEEECCCCCCHHHHH
Confidence 445555555543 3444444 44557889999999999876
No 41
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=94.41 E-value=0.038 Score=41.79 Aligned_cols=40 Identities=18% Similarity=0.305 Sum_probs=25.4
Q ss_pred CCCHHHHHHHHHHHHHHHhhC-CCcEEEEeecCCCCCCceEe
Q psy12526 54 FASQEKVFDALGRDILDNAFQ-GYNACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 54 ~~~q~~v~~~~~~~lv~~~~~-G~n~ti~aYGqtgSGKT~Tm 94 (103)
....++-.+.+. ..+...++ +....++-||+.|+|||+++
T Consensus 32 l~~Re~e~~~l~-~~l~~~~~~~~~~~~lI~G~~GtGKT~l~ 72 (394)
T PRK00411 32 LPHREEQIEELA-FALRPALRGSRPLNVLIYGPPGTGKTTTV 72 (394)
T ss_pred CCCHHHHHHHHH-HHHHHHhCCCCCCeEEEECCCCCCHHHHH
Confidence 334455555554 33344443 34456789999999999875
No 42
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=94.27 E-value=0.035 Score=43.46 Aligned_cols=50 Identities=22% Similarity=0.367 Sum_probs=31.7
Q ss_pred CceEEeceEEecCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEec
Q psy12526 35 PKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLN 95 (103)
Q Consensus 35 ~~~F~fd~vf~s~~~~~~~~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~ 95 (103)
...|+||.-. ...+++..|..+. .+.+. -..+|. ++-||.+|+||||-|.
T Consensus 99 ~~~~tFdnFv--------~g~~n~~a~~~~~-~~~~~-~~~~n~-l~lyG~~G~GKTHLl~ 148 (440)
T PRK14088 99 NPDYTFENFV--------VGPGNSFAYHAAL-EVAKN-PGRYNP-LFIYGGVGLGKTHLLQ 148 (440)
T ss_pred CCCCcccccc--------cCCchHHHHHHHH-HHHhC-cCCCCe-EEEEcCCCCcHHHHHH
Confidence 3567777654 2345556665543 33332 123675 8999999999999765
No 43
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=93.85 E-value=0.041 Score=42.88 Aligned_cols=50 Identities=26% Similarity=0.374 Sum_probs=29.4
Q ss_pred ceEEeceEEecCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEec
Q psy12526 36 KTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLN 95 (103)
Q Consensus 36 ~~F~fd~vf~s~~~~~~~~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~ 95 (103)
..|+||.-. ...+++..|..+ ..+.+.--..+| .++-||.+|+||||.+.
T Consensus 117 ~~~tfd~fv--------~g~~n~~a~~~~-~~~~~~~~~~~~-~l~l~G~~G~GKThL~~ 166 (450)
T PRK00149 117 PKYTFDNFV--------VGKSNRLAHAAA-LAVAENPGKAYN-PLFIYGGVGLGKTHLLH 166 (450)
T ss_pred CCCcccccc--------cCCCcHHHHHHH-HHHHhCcCccCC-eEEEECCCCCCHHHHHH
Confidence 556666533 223455555544 334333222345 47789999999999764
No 44
>PRK08084 DNA replication initiation factor; Provisional
Probab=93.81 E-value=0.073 Score=38.06 Aligned_cols=48 Identities=21% Similarity=0.384 Sum_probs=29.2
Q ss_pred CceEEeceEEecCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEec
Q psy12526 35 PKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLN 95 (103)
Q Consensus 35 ~~~F~fd~vf~s~~~~~~~~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~ 95 (103)
+..++||.-+ .. .+...+..+- .+.. ..-...++-||.+|+||||-+.
T Consensus 16 ~~~~~fd~f~--------~~-~n~~a~~~l~-~~~~---~~~~~~l~l~Gp~G~GKThLl~ 63 (235)
T PRK08084 16 PDDETFASFY--------PG-DNDSLLAALQ-NALR---QEHSGYIYLWSREGAGRSHLLH 63 (235)
T ss_pred CCcCCccccc--------cC-ccHHHHHHHH-HHHh---CCCCCeEEEECCCCCCHHHHHH
Confidence 4556777544 33 5555665443 3322 2222368889999999999765
No 45
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=93.79 E-value=0.018 Score=40.50 Aligned_cols=16 Identities=25% Similarity=0.453 Sum_probs=13.2
Q ss_pred EEeecCCCCCCceEec
Q psy12526 80 IFAYGQTGEKTNYLLN 95 (103)
Q Consensus 80 i~aYGqtgSGKT~Tm~ 95 (103)
+...|.||||||+|+.
T Consensus 26 ~~I~G~TGsGKS~~~~ 41 (229)
T PF01935_consen 26 IAIFGTTGSGKSNTVK 41 (229)
T ss_pred EEEECCCCCCHHHHHH
Confidence 3468999999999873
No 46
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=93.74 E-value=0.076 Score=38.69 Aligned_cols=40 Identities=18% Similarity=0.233 Sum_probs=27.2
Q ss_pred CCCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEec
Q psy12526 53 NFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLN 95 (103)
Q Consensus 53 ~~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~ 95 (103)
....+..++..+. .+++.+-.+.| ++-||+.|+||||-..
T Consensus 84 ~~~~~~~~l~~~~-~~~~~~~~~~n--l~l~G~~G~GKThLa~ 123 (254)
T COG1484 84 QPGIDKKALEDLA-SLVEFFERGEN--LVLLGPPGVGKTHLAI 123 (254)
T ss_pred CcchhHHHHHHHH-HHHHHhccCCc--EEEECCCCCcHHHHHH
Confidence 3446777777664 56656555555 4459999999999543
No 47
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=93.69 E-value=0.05 Score=41.73 Aligned_cols=50 Identities=26% Similarity=0.374 Sum_probs=28.7
Q ss_pred ceEEeceEEecCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEec
Q psy12526 36 KTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLN 95 (103)
Q Consensus 36 ~~F~fd~vf~s~~~~~~~~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~ 95 (103)
..|+||.-. ....+...+..+ ..+.+.--..+| .++-||.+|+||||.+.
T Consensus 105 ~~~tfd~fi--------~g~~n~~a~~~~-~~~~~~~~~~~n-~l~l~G~~G~GKThL~~ 154 (405)
T TIGR00362 105 PKYTFDNFV--------VGKSNRLAHAAA-LAVAENPGKAYN-PLFIYGGVGLGKTHLLH 154 (405)
T ss_pred CCCcccccc--------cCCcHHHHHHHH-HHHHhCcCccCC-eEEEECCCCCcHHHHHH
Confidence 456666532 223455555443 333333111244 46789999999999764
No 48
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=93.64 E-value=0.064 Score=41.17 Aligned_cols=33 Identities=27% Similarity=0.458 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHhhCCC-cEEEEeecCCCCCCceEe
Q psy12526 61 FDALGRDILDNAFQGY-NACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 61 ~~~~~~~lv~~~~~G~-n~ti~aYGqtgSGKT~Tm 94 (103)
++.+. .++..++.|. ...++.||.+|+|||.|+
T Consensus 26 i~~l~-~~l~~~~~~~~p~n~~iyG~~GTGKT~~~ 59 (366)
T COG1474 26 INQLA-SFLAPALRGERPSNIIIYGPTGTGKTATV 59 (366)
T ss_pred HHHHH-HHHHHHhcCCCCccEEEECCCCCCHhHHH
Confidence 34443 3344445444 333999999999999875
No 49
>PRK10436 hypothetical protein; Provisional
Probab=93.51 E-value=0.031 Score=44.22 Aligned_cols=28 Identities=25% Similarity=0.273 Sum_probs=22.2
Q ss_pred HHHHhhCCCcEEEEeecCCCCCCceEec
Q psy12526 68 ILDNAFQGYNACIFAYGQTGEKTNYLLN 95 (103)
Q Consensus 68 lv~~~~~G~n~ti~aYGqtgSGKT~Tm~ 95 (103)
.+..++..-++.|+.-|.||||||.||.
T Consensus 209 ~l~~~~~~~~GliLvtGpTGSGKTTtL~ 236 (462)
T PRK10436 209 QFRQALQQPQGLILVTGPTGSGKTVTLY 236 (462)
T ss_pred HHHHHHHhcCCeEEEECCCCCChHHHHH
Confidence 3445555567889999999999999985
No 50
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=93.48 E-value=0.036 Score=44.02 Aligned_cols=28 Identities=18% Similarity=0.230 Sum_probs=22.2
Q ss_pred HHHHhhCCCcEEEEeecCCCCCCceEec
Q psy12526 68 ILDNAFQGYNACIFAYGQTGEKTNYLLN 95 (103)
Q Consensus 68 lv~~~~~G~n~ti~aYGqtgSGKT~Tm~ 95 (103)
.+..++..-++.|+..|.||||||.||.
T Consensus 233 ~l~~~~~~~~GlilitGptGSGKTTtL~ 260 (486)
T TIGR02533 233 RFERLIRRPHGIILVTGPTGSGKTTTLY 260 (486)
T ss_pred HHHHHHhcCCCEEEEEcCCCCCHHHHHH
Confidence 4455566666788899999999999986
No 51
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=93.34 E-value=0.036 Score=44.68 Aligned_cols=28 Identities=18% Similarity=0.243 Sum_probs=22.2
Q ss_pred HHHHhhCCCcEEEEeecCCCCCCceEec
Q psy12526 68 ILDNAFQGYNACIFAYGQTGEKTNYLLN 95 (103)
Q Consensus 68 lv~~~~~G~n~ti~aYGqtgSGKT~Tm~ 95 (103)
.+..++..-++.|+..|.||||||.||.
T Consensus 307 ~l~~~~~~~~Glilv~G~tGSGKTTtl~ 334 (564)
T TIGR02538 307 LFLEAIHKPQGMVLVTGPTGSGKTVSLY 334 (564)
T ss_pred HHHHHHHhcCCeEEEECCCCCCHHHHHH
Confidence 3445556667889999999999999984
No 52
>PRK06526 transposase; Provisional
Probab=93.31 E-value=0.034 Score=40.54 Aligned_cols=20 Identities=20% Similarity=0.172 Sum_probs=16.0
Q ss_pred CCCcEEEEeecCCCCCCceEec
Q psy12526 74 QGYNACIFAYGQTGEKTNYLLN 95 (103)
Q Consensus 74 ~G~n~ti~aYGqtgSGKT~Tm~ 95 (103)
.+.| |+-+|.+|+||||.+.
T Consensus 97 ~~~n--lll~Gp~GtGKThLa~ 116 (254)
T PRK06526 97 GKEN--VVFLGPPGTGKTHLAI 116 (254)
T ss_pred cCce--EEEEeCCCCchHHHHH
Confidence 4455 6789999999999765
No 53
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=93.25 E-value=0.059 Score=42.09 Aligned_cols=51 Identities=24% Similarity=0.346 Sum_probs=32.9
Q ss_pred CCceEEeceEEecCCCCCCCCCCHHHHHHHHHHHHHHHhhC-CCcEEEEeecCCCCCCceEec
Q psy12526 34 PPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQ-GYNACIFAYGQTGEKTNYLLN 95 (103)
Q Consensus 34 ~~~~F~fd~vf~s~~~~~~~~~~q~~v~~~~~~~lv~~~~~-G~n~ti~aYGqtgSGKT~Tm~ 95 (103)
....|+||.-. ...+++..+.... .+ ...-. -|| -||-||.+|+||||-|.
T Consensus 80 l~~~ytFdnFv--------~g~~N~~A~aa~~-~v-a~~~g~~~n-plfi~G~~GlGKTHLl~ 131 (408)
T COG0593 80 LNPKYTFDNFV--------VGPSNRLAYAAAK-AV-AENPGGAYN-PLFIYGGVGLGKTHLLQ 131 (408)
T ss_pred CCCCCchhhee--------eCCchHHHHHHHH-HH-HhccCCcCC-cEEEECCCCCCHHHHHH
Confidence 45678998866 4456655554432 22 22222 255 68899999999999775
No 54
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=92.98 E-value=0.048 Score=41.25 Aligned_cols=28 Identities=21% Similarity=0.256 Sum_probs=20.3
Q ss_pred HHHHhhCCCcEEEEeecCCCCCCceEec
Q psy12526 68 ILDNAFQGYNACIFAYGQTGEKTNYLLN 95 (103)
Q Consensus 68 lv~~~~~G~n~ti~aYGqtgSGKT~Tm~ 95 (103)
.+..++.--.+.|+-.|.||||||.||.
T Consensus 113 ~l~~~~~~~~g~ili~G~tGSGKTT~l~ 140 (343)
T TIGR01420 113 VLRELAERPRGLILVTGPTGSGKSTTLA 140 (343)
T ss_pred HHHHHHhhcCcEEEEECCCCCCHHHHHH
Confidence 3444443334678899999999999885
No 55
>PRK08116 hypothetical protein; Validated
Probab=92.96 E-value=0.076 Score=38.92 Aligned_cols=40 Identities=20% Similarity=0.357 Sum_probs=26.2
Q ss_pred CCHHHHHHHHHHHHHHHhhC--CCcEEEEeecCCCCCCceEec
Q psy12526 55 ASQEKVFDALGRDILDNAFQ--GYNACIFAYGQTGEKTNYLLN 95 (103)
Q Consensus 55 ~~q~~v~~~~~~~lv~~~~~--G~n~ti~aYGqtgSGKT~Tm~ 95 (103)
..++..+..+ ...++.+.+ ..|..++-||.+|+||||-+.
T Consensus 91 ~~~~~a~~~a-~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~ 132 (268)
T PRK08116 91 KGSEKAYKIA-RKYVKKFEEMKKENVGLLLWGSVGTGKTYLAA 132 (268)
T ss_pred hHHHHHHHHH-HHHHHHHHhhccCCceEEEECCCCCCHHHHHH
Confidence 4455555543 455565443 335568899999999999654
No 56
>PRK05642 DNA replication initiation factor; Validated
Probab=92.95 E-value=0.1 Score=37.28 Aligned_cols=18 Identities=28% Similarity=0.565 Sum_probs=15.0
Q ss_pred EEEEeecCCCCCCceEec
Q psy12526 78 ACIFAYGQTGEKTNYLLN 95 (103)
Q Consensus 78 ~ti~aYGqtgSGKT~Tm~ 95 (103)
..++-||.+|+||||-+.
T Consensus 46 ~~l~l~G~~G~GKTHLl~ 63 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQ 63 (234)
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 457789999999999654
No 57
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=92.73 E-value=0.057 Score=41.60 Aligned_cols=19 Identities=21% Similarity=0.230 Sum_probs=16.0
Q ss_pred cEEEEeecCCCCCCceEec
Q psy12526 77 NACIFAYGQTGEKTNYLLN 95 (103)
Q Consensus 77 n~ti~aYGqtgSGKT~Tm~ 95 (103)
++.|+..|.||||||.||.
T Consensus 149 ~GlilI~G~TGSGKTT~l~ 167 (372)
T TIGR02525 149 AGLGLICGETGSGKSTLAA 167 (372)
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 4567889999999999873
No 58
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=92.56 E-value=0.069 Score=39.08 Aligned_cols=27 Identities=19% Similarity=0.251 Sum_probs=19.8
Q ss_pred HHHhhCCCcEEEEeecCCCCCCceEec
Q psy12526 69 LDNAFQGYNACIFAYGQTGEKTNYLLN 95 (103)
Q Consensus 69 v~~~~~G~n~ti~aYGqtgSGKT~Tm~ 95 (103)
+..++..-.+.|+-.|.||||||.+|.
T Consensus 72 l~~~~~~~~GlilisG~tGSGKTT~l~ 98 (264)
T cd01129 72 FRKLLEKPHGIILVTGPTGSGKTTTLY 98 (264)
T ss_pred HHHHHhcCCCEEEEECCCCCcHHHHHH
Confidence 344454445567889999999999874
No 59
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=92.49 E-value=0.046 Score=39.47 Aligned_cols=29 Identities=34% Similarity=0.526 Sum_probs=19.4
Q ss_pred HHHHHHhhCCCcEEEEeecCCCCCCceEec
Q psy12526 66 RDILDNAFQGYNACIFAYGQTGEKTNYLLN 95 (103)
Q Consensus 66 ~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~ 95 (103)
..++...+.+ .+.|+--|.||||||.+|.
T Consensus 117 ~~~l~~~v~~-~~~ili~G~tGSGKTT~l~ 145 (270)
T PF00437_consen 117 AEFLRSAVRG-RGNILISGPTGSGKTTLLN 145 (270)
T ss_dssp HHHHHHCHHT-TEEEEEEESTTSSHHHHHH
T ss_pred HHHHhhcccc-ceEEEEECCCccccchHHH
Confidence 3444443333 4567778999999998873
No 60
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=92.34 E-value=0.16 Score=35.38 Aligned_cols=21 Identities=19% Similarity=0.442 Sum_probs=17.3
Q ss_pred CCCcEEEEeecCCCCCCceEe
Q psy12526 74 QGYNACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 74 ~G~n~ti~aYGqtgSGKT~Tm 94 (103)
......|+-||++|+||||.+
T Consensus 35 ~~~~~~lll~G~~G~GKT~la 55 (226)
T TIGR03420 35 GKGDRFLYLWGESGSGKSHLL 55 (226)
T ss_pred cCCCCeEEEECCCCCCHHHHH
Confidence 455667889999999999865
No 61
>PRK12377 putative replication protein; Provisional
Probab=92.27 E-value=0.17 Score=36.84 Aligned_cols=39 Identities=21% Similarity=0.291 Sum_probs=26.8
Q ss_pred CCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEec
Q psy12526 55 ASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLN 95 (103)
Q Consensus 55 ~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~ 95 (103)
..|..++..+ ..++..+..+. ..++-+|.+|+||||.+.
T Consensus 81 ~~~~~a~~~a-~~~a~~~~~~~-~~l~l~G~~GtGKThLa~ 119 (248)
T PRK12377 81 DGQRYALSQA-KSIADELMTGC-TNFVFSGKPGTGKNHLAA 119 (248)
T ss_pred hhHHHHHHHH-HHHHHHHHhcC-CeEEEECCCCCCHHHHHH
Confidence 4566566543 46666665554 357789999999999764
No 62
>PRK08727 hypothetical protein; Validated
Probab=92.20 E-value=0.057 Score=38.58 Aligned_cols=17 Identities=18% Similarity=0.284 Sum_probs=14.6
Q ss_pred EEEeecCCCCCCceEec
Q psy12526 79 CIFAYGQTGEKTNYLLN 95 (103)
Q Consensus 79 ti~aYGqtgSGKT~Tm~ 95 (103)
.|+-||.+|+||||-+.
T Consensus 43 ~l~l~G~~G~GKThL~~ 59 (233)
T PRK08727 43 WLYLSGPAGTGKTHLAL 59 (233)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 48899999999999654
No 63
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=92.14 E-value=0.072 Score=40.76 Aligned_cols=20 Identities=30% Similarity=0.458 Sum_probs=17.2
Q ss_pred CcEEEEeecCCCCCCceEec
Q psy12526 76 YNACIFAYGQTGEKTNYLLN 95 (103)
Q Consensus 76 ~n~ti~aYGqtgSGKT~Tm~ 95 (103)
-...|+-.|.||||||.||.
T Consensus 133 ~~glilI~GpTGSGKTTtL~ 152 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLLA 152 (358)
T ss_pred cCCEEEEECCCCCCHHHHHH
Confidence 46788899999999999874
No 64
>PRK08181 transposase; Validated
Probab=92.10 E-value=0.18 Score=37.18 Aligned_cols=20 Identities=25% Similarity=0.516 Sum_probs=15.9
Q ss_pred CCCcEEEEeecCCCCCCceEec
Q psy12526 74 QGYNACIFAYGQTGEKTNYLLN 95 (103)
Q Consensus 74 ~G~n~ti~aYGqtgSGKT~Tm~ 95 (103)
.+.| |+-||.+|+||||-+.
T Consensus 105 ~~~n--lll~Gp~GtGKTHLa~ 124 (269)
T PRK08181 105 KGAN--LLLFGPPGGGKSHLAA 124 (269)
T ss_pred cCce--EEEEecCCCcHHHHHH
Confidence 4555 6789999999999654
No 65
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=91.96 E-value=0.079 Score=34.82 Aligned_cols=26 Identities=15% Similarity=0.266 Sum_probs=18.8
Q ss_pred HHHHhhCCCcEEEEeecCCCCCCceEec
Q psy12526 68 ILDNAFQGYNACIFAYGQTGEKTNYLLN 95 (103)
Q Consensus 68 lv~~~~~G~n~ti~aYGqtgSGKT~Tm~ 95 (103)
++..+++|.+ ++.-+.||+|||....
T Consensus 7 ~~~~i~~~~~--~li~aptGsGKT~~~~ 32 (169)
T PF00270_consen 7 AIEAIISGKN--VLISAPTGSGKTLAYI 32 (169)
T ss_dssp HHHHHHTTSE--EEEECSTTSSHHHHHH
T ss_pred HHHHHHcCCC--EEEECCCCCccHHHHH
Confidence 3444556666 6789999999998654
No 66
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=91.85 E-value=0.1 Score=41.00 Aligned_cols=50 Identities=28% Similarity=0.420 Sum_probs=29.5
Q ss_pred eEEeceEEecCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEecc
Q psy12526 37 TFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLNG 96 (103)
Q Consensus 37 ~F~fd~vf~s~~~~~~~~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~G 96 (103)
.|+||.-. ...+++..|..+ ..+...--..+| -+|-||.+|+||||-|..
T Consensus 111 ~~tFdnFv--------~g~~n~~A~~aa-~~~a~~~~~~~n-pl~i~G~~G~GKTHLl~A 160 (450)
T PRK14087 111 ENTFENFV--------IGSSNEQAFIAV-QTVSKNPGISYN-PLFIYGESGMGKTHLLKA 160 (450)
T ss_pred ccchhccc--------CCCcHHHHHHHH-HHHHhCcCcccC-ceEEECCCCCcHHHHHHH
Confidence 46777644 233455566443 344332111244 478899999999997753
No 67
>PRK07952 DNA replication protein DnaC; Validated
Probab=91.69 E-value=0.23 Score=36.13 Aligned_cols=39 Identities=13% Similarity=0.129 Sum_probs=25.6
Q ss_pred CCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEec
Q psy12526 55 ASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLN 95 (103)
Q Consensus 55 ~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~ 95 (103)
..|..++..+. ..++....+.+ .++-+|.+|+||||.+.
T Consensus 79 ~~q~~al~~a~-~~~~~~~~~~~-~~~l~G~~GtGKThLa~ 117 (244)
T PRK07952 79 EGQMNALSKAR-QYVEEFDGNIA-SFIFSGKPGTGKNHLAA 117 (244)
T ss_pred chHHHHHHHHH-HHHHhhccCCc-eEEEECCCCCCHHHHHH
Confidence 35655665543 44555444433 67889999999999654
No 68
>PRK06835 DNA replication protein DnaC; Validated
Probab=91.38 E-value=0.15 Score=38.60 Aligned_cols=36 Identities=25% Similarity=0.526 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEec
Q psy12526 58 EKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLN 95 (103)
Q Consensus 58 ~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~ 95 (103)
+.+++.+ ...++.+-... -.|+-||.+|+||||-+.
T Consensus 166 ~~~~~~~-~~f~~~f~~~~-~~Lll~G~~GtGKThLa~ 201 (329)
T PRK06835 166 EKILEKC-KNFIENFDKNN-ENLLFYGNTGTGKTFLSN 201 (329)
T ss_pred HHHHHHH-HHHHHHHhccC-CcEEEECCCCCcHHHHHH
Confidence 3344433 35666655444 458899999999999654
No 69
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=91.22 E-value=0.12 Score=39.04 Aligned_cols=28 Identities=25% Similarity=0.335 Sum_probs=18.4
Q ss_pred HHHHHhhCCCcEEEEeecCCCCCCceEec
Q psy12526 67 DILDNAFQGYNACIFAYGQTGEKTNYLLN 95 (103)
Q Consensus 67 ~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~ 95 (103)
.++..++.+. ..|+-.|.||||||.+|.
T Consensus 139 ~~L~~~v~~~-~~ilI~G~tGSGKTTll~ 166 (319)
T PRK13894 139 EAIIAAVRAH-RNILVIGGTGSGKTTLVN 166 (319)
T ss_pred HHHHHHHHcC-CeEEEECCCCCCHHHHHH
Confidence 4455555443 345667999999997653
No 70
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=90.96 E-value=0.19 Score=34.57 Aligned_cols=16 Identities=25% Similarity=0.453 Sum_probs=13.5
Q ss_pred EEEeecCCCCCCceEe
Q psy12526 79 CIFAYGQTGEKTNYLL 94 (103)
Q Consensus 79 ti~aYGqtgSGKT~Tm 94 (103)
.++-+|++|+||||..
T Consensus 49 ~l~l~G~~G~GKThLa 64 (178)
T PF01695_consen 49 NLILYGPPGTGKTHLA 64 (178)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEEhhHhHHHHHHH
Confidence 4777999999999954
No 71
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=90.79 E-value=0.11 Score=38.82 Aligned_cols=28 Identities=32% Similarity=0.430 Sum_probs=19.5
Q ss_pred HHHHHhhCCCcEEEEeecCCCCCCceEec
Q psy12526 67 DILDNAFQGYNACIFAYGQTGEKTNYLLN 95 (103)
Q Consensus 67 ~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~ 95 (103)
.++..++.+ ...|+-.|.||||||.+|.
T Consensus 123 ~~L~~~v~~-~~~ilI~G~tGSGKTTll~ 150 (299)
T TIGR02782 123 DVLREAVLA-RKNILVVGGTGSGKTTLAN 150 (299)
T ss_pred HHHHHHHHc-CCeEEEECCCCCCHHHHHH
Confidence 444455543 3457789999999998763
No 72
>PRK09183 transposase/IS protein; Provisional
Probab=90.40 E-value=0.18 Score=36.74 Aligned_cols=22 Identities=23% Similarity=0.170 Sum_probs=15.9
Q ss_pred hhCCCcEEEEeecCCCCCCceEec
Q psy12526 72 AFQGYNACIFAYGQTGEKTNYLLN 95 (103)
Q Consensus 72 ~~~G~n~ti~aYGqtgSGKT~Tm~ 95 (103)
+-.|.| |+-+|++|+||||-+.
T Consensus 99 i~~~~~--v~l~Gp~GtGKThLa~ 120 (259)
T PRK09183 99 IERNEN--IVLLGPSGVGKTHLAI 120 (259)
T ss_pred hhcCCe--EEEEeCCCCCHHHHHH
Confidence 345655 4469999999999654
No 73
>PRK08939 primosomal protein DnaI; Reviewed
Probab=90.30 E-value=0.26 Score=36.89 Aligned_cols=39 Identities=26% Similarity=0.373 Sum_probs=25.8
Q ss_pred CHHHHHHHHHHHHHHHhhCC-CcEEEEeecCCCCCCceEec
Q psy12526 56 SQEKVFDALGRDILDNAFQG-YNACIFAYGQTGEKTNYLLN 95 (103)
Q Consensus 56 ~q~~v~~~~~~~lv~~~~~G-~n~ti~aYGqtgSGKT~Tm~ 95 (103)
.+..++..+ ...++....| ..-.|+-||.+|+||||-+.
T Consensus 135 ~~~~~~~~~-~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~ 174 (306)
T PRK08939 135 DRLDALMAA-LDFLEAYPPGEKVKGLYLYGDFGVGKSYLLA 174 (306)
T ss_pred HHHHHHHHH-HHHHHHhhccCCCCeEEEECCCCCCHHHHHH
Confidence 555666643 4566655432 22358889999999999664
No 74
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=90.10 E-value=0.24 Score=36.41 Aligned_cols=21 Identities=10% Similarity=0.123 Sum_probs=15.8
Q ss_pred CCCcEEEEeecCCCCCCceEe
Q psy12526 74 QGYNACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 74 ~G~n~ti~aYGqtgSGKT~Tm 94 (103)
.+-...++-||+.|+|||+++
T Consensus 33 ~~~~~~lll~Gp~GtGKT~la 53 (337)
T PRK12402 33 SPNLPHLLVQGPPGSGKTAAV 53 (337)
T ss_pred CCCCceEEEECCCCCCHHHHH
Confidence 343235778999999999865
No 75
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=89.94 E-value=0.29 Score=34.35 Aligned_cols=19 Identities=21% Similarity=0.504 Sum_probs=15.4
Q ss_pred CcEEEEeecCCCCCCceEe
Q psy12526 76 YNACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 76 ~n~ti~aYGqtgSGKT~Tm 94 (103)
.+..++-||+.|+||||-+
T Consensus 41 ~~~~~~l~G~~G~GKT~La 59 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLL 59 (227)
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 3456788999999999854
No 76
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=89.93 E-value=0.26 Score=42.50 Aligned_cols=36 Identities=19% Similarity=0.380 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHhhC--CCcEEEEeecCCCCCCceEe
Q psy12526 58 EKVFDALGRDILDNAFQ--GYNACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 58 ~~v~~~~~~~lv~~~~~--G~n~ti~aYGqtgSGKT~Tm 94 (103)
++=++.+. .+|..++. +-+.+|+-||.+|+|||.|+
T Consensus 761 EeEIeeLa-sfL~paIkgsgpnnvLYIyG~PGTGKTATV 798 (1164)
T PTZ00112 761 EKEIKEVH-GFLESGIKQSGSNQILYISGMPGTGKTATV 798 (1164)
T ss_pred HHHHHHHH-HHHHHHHhcCCCCceEEEECCCCCCHHHHH
Confidence 33334443 33444443 44567889999999999875
No 77
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=89.87 E-value=0.11 Score=35.64 Aligned_cols=27 Identities=26% Similarity=0.367 Sum_probs=18.5
Q ss_pred HHHHhhCCCcEEEEeecCCCCCCceEe
Q psy12526 68 ILDNAFQGYNACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 68 lv~~~~~G~n~ti~aYGqtgSGKT~Tm 94 (103)
|.+.+-.+.+..++-||+.|+|||+.|
T Consensus 11 l~~~l~~~~~~~~~l~G~rg~GKTsLl 37 (234)
T PF01637_consen 11 LKELLESGPSQHILLYGPRGSGKTSLL 37 (234)
T ss_dssp HHHCHHH--SSEEEEEESTTSSHHHHH
T ss_pred HHHHHHhhcCcEEEEEcCCcCCHHHHH
Confidence 333334455678889999999999865
No 78
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=89.78 E-value=0.24 Score=37.54 Aligned_cols=24 Identities=29% Similarity=0.369 Sum_probs=17.2
Q ss_pred HHHhh-CCCcEEEEeecCCCCCCceEe
Q psy12526 69 LDNAF-QGYNACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 69 v~~~~-~G~n~ti~aYGqtgSGKT~Tm 94 (103)
+..++ .+.| |+--|.||||||.+|
T Consensus 137 L~~~v~~~~n--ilI~G~tGSGKTTll 161 (323)
T PRK13833 137 IRSAIDSRLN--IVISGGTGSGKTTLA 161 (323)
T ss_pred HHHHHHcCCe--EEEECCCCCCHHHHH
Confidence 33433 4444 678999999999877
No 79
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=89.62 E-value=0.22 Score=40.89 Aligned_cols=22 Identities=18% Similarity=0.155 Sum_probs=19.3
Q ss_pred hCCCcEEEEeecCCCCCCceEe
Q psy12526 73 FQGYNACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 73 ~~G~n~ti~aYGqtgSGKT~Tm 94 (103)
..+-|-||+-.|++|||||.++
T Consensus 81 ~~~~~Q~IiisGeSGsGKTe~~ 102 (689)
T PF00063_consen 81 RTRQNQSIIISGESGSGKTETS 102 (689)
T ss_dssp HHTSEEEEEEEESTTSSHHHHH
T ss_pred ccccccceeeccccccccccch
Confidence 4578999999999999999863
No 80
>PF13245 AAA_19: Part of AAA domain
Probab=89.53 E-value=0.14 Score=30.54 Aligned_cols=16 Identities=19% Similarity=0.262 Sum_probs=12.8
Q ss_pred EEeecCCCCCCceEec
Q psy12526 80 IFAYGQTGEKTNYLLN 95 (103)
Q Consensus 80 i~aYGqtgSGKT~Tm~ 95 (103)
+..-|..|||||+|+.
T Consensus 13 ~vv~g~pGtGKT~~~~ 28 (76)
T PF13245_consen 13 FVVQGPPGTGKTTTLA 28 (76)
T ss_pred EEEECCCCCCHHHHHH
Confidence 3348999999998764
No 81
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=89.42 E-value=0.091 Score=36.36 Aligned_cols=17 Identities=29% Similarity=0.442 Sum_probs=12.0
Q ss_pred EEEeecCCCCCCceEec
Q psy12526 79 CIFAYGQTGEKTNYLLN 95 (103)
Q Consensus 79 ti~aYGqtgSGKT~Tm~ 95 (103)
-++.+|.+|||||.+|.
T Consensus 40 h~li~G~tgsGKS~~l~ 56 (205)
T PF01580_consen 40 HLLIAGATGSGKSTLLR 56 (205)
T ss_dssp SEEEE--TTSSHHHHHH
T ss_pred eEEEEcCCCCCccHHHH
Confidence 36789999999998664
No 82
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=89.21 E-value=0.3 Score=36.92 Aligned_cols=30 Identities=13% Similarity=0.238 Sum_probs=21.9
Q ss_pred HHHHHHhhCCCcEEEEeecCCCCCCceEec
Q psy12526 66 RDILDNAFQGYNACIFAYGQTGEKTNYLLN 95 (103)
Q Consensus 66 ~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~ 95 (103)
.+++..+.--.-+.|+.-|.|||||+.||.
T Consensus 116 Pevlk~la~~kRGLviiVGaTGSGKSTtmA 145 (375)
T COG5008 116 PEVLKDLALAKRGLVIIVGATGSGKSTTMA 145 (375)
T ss_pred cHHHHHhhcccCceEEEECCCCCCchhhHH
Confidence 355555444556678889999999999874
No 83
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=89.03 E-value=0.23 Score=34.11 Aligned_cols=27 Identities=37% Similarity=0.338 Sum_probs=17.6
Q ss_pred HHHHHhhC-CCcEEEEeecCCCCCCceEec
Q psy12526 67 DILDNAFQ-GYNACIFAYGQTGEKTNYLLN 95 (103)
Q Consensus 67 ~lv~~~~~-G~n~ti~aYGqtgSGKT~Tm~ 95 (103)
.++...+. |.+ +.--|.||||||.+|.
T Consensus 16 ~~l~~~v~~g~~--i~I~G~tGSGKTTll~ 43 (186)
T cd01130 16 AYLWLAVEARKN--ILISGGTGSGKTTLLN 43 (186)
T ss_pred HHHHHHHhCCCE--EEEECCCCCCHHHHHH
Confidence 34444443 444 5568999999998653
No 84
>smart00242 MYSc Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Probab=88.93 E-value=0.41 Score=39.57 Aligned_cols=22 Identities=18% Similarity=0.137 Sum_probs=19.4
Q ss_pred hCCCcEEEEeecCCCCCCceEe
Q psy12526 73 FQGYNACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 73 ~~G~n~ti~aYGqtgSGKT~Tm 94 (103)
-.+.|-||+.-|++|||||.|.
T Consensus 88 ~~~~~QsIiisGESGaGKTe~~ 109 (677)
T smart00242 88 NDKENQSIIISGESGAGKTENT 109 (677)
T ss_pred hcCCCceEEEecCCCCcchHHH
Confidence 3688999999999999999864
No 85
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=88.82 E-value=0.49 Score=36.72 Aligned_cols=19 Identities=16% Similarity=0.218 Sum_probs=15.9
Q ss_pred cEEEEeecCCCCCCceEec
Q psy12526 77 NACIFAYGQTGEKTNYLLN 95 (103)
Q Consensus 77 n~ti~aYGqtgSGKT~Tm~ 95 (103)
...|+.+|.||+|||.|+.
T Consensus 174 ~~vi~lvGptGvGKTTT~a 192 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIA 192 (388)
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3578889999999999863
No 86
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=88.81 E-value=0.29 Score=38.26 Aligned_cols=37 Identities=22% Similarity=0.195 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHhhCC---C-cEEEEeecCCCCCCceEe
Q psy12526 58 EKVFDALGRDILDNAFQG---Y-NACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 58 ~~v~~~~~~~lv~~~~~G---~-n~ti~aYGqtgSGKT~Tm 94 (103)
...|.....-++.+..+. . ..-|.--|+||.|||.|+
T Consensus 180 ~~~~~~~l~~~~~~~~~~~~~~~~~vi~LVGPTGVGKTTTl 220 (407)
T COG1419 180 LRYFSEKLRKLLLSLIENLIVEQKRVIALVGPTGVGKTTTL 220 (407)
T ss_pred hhhHHHHHHHHHHhhccccccccCcEEEEECCCCCcHHHHH
Confidence 445555555555555544 2 333444599999999986
No 87
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=88.69 E-value=0.35 Score=36.86 Aligned_cols=36 Identities=28% Similarity=0.514 Sum_probs=26.9
Q ss_pred CCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEe
Q psy12526 55 ASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 55 ~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm 94 (103)
..|+.+|+.++..+.. .+| ..+|.-|.-|+||||.+
T Consensus 4 ~eQ~~~~~~v~~~~~~--~~~--~~~fv~G~~GtGKs~l~ 39 (364)
T PF05970_consen 4 EEQRRVFDTVIEAIEN--EEG--LNFFVTGPAGTGKSFLI 39 (364)
T ss_pred HHHHHHHHHHHHHHHc--cCC--cEEEEEcCCCCChhHHH
Confidence 5799999988754432 344 45678999999999965
No 88
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=88.55 E-value=0.26 Score=32.29 Aligned_cols=17 Identities=12% Similarity=0.026 Sum_probs=13.3
Q ss_pred EEEeecCCCCCCceEec
Q psy12526 79 CIFAYGQTGEKTNYLLN 95 (103)
Q Consensus 79 ti~aYGqtgSGKT~Tm~ 95 (103)
.++-.|.+|||||.++.
T Consensus 26 ~~~i~~~~GsGKT~~~~ 42 (201)
T smart00487 26 DVILAAPTGSGKTLAAL 42 (201)
T ss_pred cEEEECCCCCchhHHHH
Confidence 34568899999999765
No 89
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=88.55 E-value=0.26 Score=35.15 Aligned_cols=23 Identities=17% Similarity=0.333 Sum_probs=16.5
Q ss_pred hCCCcEEEEeecCCCCCCceEec
Q psy12526 73 FQGYNACIFAYGQTGEKTNYLLN 95 (103)
Q Consensus 73 ~~G~n~ti~aYGqtgSGKT~Tm~ 95 (103)
++--...++-+|+.|+|||+.+.
T Consensus 39 ~~~~~~~~~l~G~~G~GKTtl~~ 61 (269)
T TIGR03015 39 LSQREGFILITGEVGAGKTTLIR 61 (269)
T ss_pred HhcCCCEEEEEcCCCCCHHHHHH
Confidence 33334456779999999998654
No 90
>PF06048 DUF927: Domain of unknown function (DUF927); InterPro: IPR009270 This entry is represented by Bacteriophage PT1028, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=88.35 E-value=0.45 Score=35.10 Aligned_cols=34 Identities=18% Similarity=0.199 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEec
Q psy12526 61 FDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLN 95 (103)
Q Consensus 61 ~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~ 95 (103)
+...+.||+ ..+.--+..+--||+|++|||.++.
T Consensus 178 ~~afa~pLL-~~l~~~~~~~hl~G~Ss~GKTt~~~ 211 (286)
T PF06048_consen 178 CAAFAAPLL-SLLGVEGFGFHLYGQSSSGKTTALQ 211 (286)
T ss_pred HHHHHHHHH-HHhCCCceEEEEEeCCCCCHHHHHH
Confidence 344456766 4455556778889999999998654
No 91
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=88.00 E-value=0.68 Score=36.44 Aligned_cols=51 Identities=16% Similarity=0.335 Sum_probs=30.8
Q ss_pred CceEEeceEEecCCCCCCCCCCHHHHHHHHHHHHHHHh--hCC--CcEEEEeecCCCCCCceEec
Q psy12526 35 PKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNA--FQG--YNACIFAYGQTGEKTNYLLN 95 (103)
Q Consensus 35 ~~~F~fd~vf~s~~~~~~~~~~q~~v~~~~~~~lv~~~--~~G--~n~ti~aYGqtgSGKT~Tm~ 95 (103)
...|+||.-.- ..+++..|..+ ..+.+.. ..| +| -++-||.+|+||||-+.
T Consensus 105 ~~~~tFdnFv~--------g~~N~~a~~~a-~~~a~~~~~~~~~~~n-pl~L~G~~G~GKTHLl~ 159 (445)
T PRK12422 105 DPLMTFANFLV--------TPENDLPHRIL-QEFTKVSEQGKGFPFN-PIYLFGPEGSGKTHLMQ 159 (445)
T ss_pred Cccccccceee--------CCcHHHHHHHH-HHHHhccccccCCCCc-eEEEEcCCCCCHHHHHH
Confidence 46688887553 34555555443 3444322 223 45 36779999999999764
No 92
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=87.99 E-value=0.44 Score=34.93 Aligned_cols=20 Identities=25% Similarity=0.253 Sum_probs=16.7
Q ss_pred CCcEEEEeecCCCCCCceEe
Q psy12526 75 GYNACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 75 G~n~ti~aYGqtgSGKT~Tm 94 (103)
.-+.+|.-+|..|||||+-|
T Consensus 18 ~~~~~IgL~G~WGsGKSs~l 37 (325)
T PF07693_consen 18 DDPFVIGLYGEWGSGKSSFL 37 (325)
T ss_pred CCCeEEEEECCCCCCHHHHH
Confidence 45678888999999999865
No 93
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=87.86 E-value=0.11 Score=34.62 Aligned_cols=27 Identities=30% Similarity=0.452 Sum_probs=14.2
Q ss_pred HHHHhhCCCcEEEEeecCCCCCCceEe
Q psy12526 68 ILDNAFQGYNACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 68 lv~~~~~G~n~ti~aYGqtgSGKT~Tm 94 (103)
++.....+-...++-.|..|+|||+.+
T Consensus 15 ~l~~~~~~~~~~~ll~G~~G~GKT~ll 41 (185)
T PF13191_consen 15 LLDAAQSGSPRNLLLTGESGSGKTSLL 41 (185)
T ss_dssp TTGGTSS-----EEE-B-TTSSHHHHH
T ss_pred HHHHHHcCCCcEEEEECCCCCCHHHHH
Confidence 333334565677899999999999754
No 94
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f
Probab=87.83 E-value=0.71 Score=38.30 Aligned_cols=21 Identities=19% Similarity=0.251 Sum_probs=18.9
Q ss_pred CCCcEEEEeecCCCCCCceEe
Q psy12526 74 QGYNACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 74 ~G~n~ti~aYGqtgSGKT~Tm 94 (103)
.+.|-||+.-|++|||||.|.
T Consensus 89 ~~~~QsIiisGESGaGKTe~~ 109 (677)
T cd01383 89 DEVNQSIIISGESGAGKTETA 109 (677)
T ss_pred cCCCceEEEecCCCCCcchHH
Confidence 588999999999999999863
No 95
>cd01377 MYSc_type_II Myosin motor domain, type II myosins. Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro
Probab=87.82 E-value=0.6 Score=38.78 Aligned_cols=21 Identities=19% Similarity=0.189 Sum_probs=18.9
Q ss_pred hCCCcEEEEeecCCCCCCceE
Q psy12526 73 FQGYNACIFAYGQTGEKTNYL 93 (103)
Q Consensus 73 ~~G~n~ti~aYGqtgSGKT~T 93 (103)
-.+.|-||+.-|++|||||.+
T Consensus 87 ~~~~~QsIiiSGESGAGKTes 107 (693)
T cd01377 87 QDRENQSILITGESGAGKTEN 107 (693)
T ss_pred hcCCCceEEEEcCCCCCchHH
Confidence 358999999999999999975
No 96
>PHA00729 NTP-binding motif containing protein
Probab=87.78 E-value=0.59 Score=33.80 Aligned_cols=30 Identities=10% Similarity=0.152 Sum_probs=20.7
Q ss_pred HHHHHHHhhCCCcEEEEeecCCCCCCceEe
Q psy12526 65 GRDILDNAFQGYNACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 65 ~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm 94 (103)
++.+++.+..+--..|+-+|..|+||||-.
T Consensus 5 ~k~~~~~l~~~~f~nIlItG~pGvGKT~LA 34 (226)
T PHA00729 5 AKKIVSAYNNNGFVSAVIFGKQGSGKTTYA 34 (226)
T ss_pred HHHHHHHHhcCCeEEEEEECCCCCCHHHHH
Confidence 344555555433357889999999999843
No 97
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act
Probab=87.73 E-value=0.66 Score=38.46 Aligned_cols=22 Identities=18% Similarity=0.285 Sum_probs=19.2
Q ss_pred hCCCcEEEEeecCCCCCCceEe
Q psy12526 73 FQGYNACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 73 ~~G~n~ti~aYGqtgSGKT~Tm 94 (103)
-.+-|-||+.-|++|||||.|.
T Consensus 84 ~~~~~QsIiisGESGaGKTe~~ 105 (674)
T cd01384 84 NEGKSQSILVSGESGAGKTETT 105 (674)
T ss_pred HcCCCceEEEECCCCCCchhHH
Confidence 3588999999999999999863
No 98
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=87.67 E-value=0.22 Score=34.66 Aligned_cols=26 Identities=15% Similarity=0.180 Sum_probs=16.5
Q ss_pred HHhhCCCcEEEEeecCCCCCCceEec
Q psy12526 70 DNAFQGYNACIFAYGQTGEKTNYLLN 95 (103)
Q Consensus 70 ~~~~~G~n~ti~aYGqtgSGKT~Tm~ 95 (103)
..++..-+-.++--|..|+||||+|.
T Consensus 11 ~~~l~~~~~~~~l~G~aGtGKT~~l~ 36 (196)
T PF13604_consen 11 RAILTSGDRVSVLQGPAGTGKTTLLK 36 (196)
T ss_dssp HHHHHCTCSEEEEEESTTSTHHHHHH
T ss_pred HHHHhcCCeEEEEEECCCCCHHHHHH
Confidence 33443333234458999999999864
No 99
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=87.41 E-value=0.5 Score=36.72 Aligned_cols=23 Identities=22% Similarity=0.333 Sum_probs=17.6
Q ss_pred HHHhhCCCcEEEEeecCCCCCCceE
Q psy12526 69 LDNAFQGYNACIFAYGQTGEKTNYL 93 (103)
Q Consensus 69 v~~~~~G~n~ti~aYGqtgSGKT~T 93 (103)
+..+++|.| ++..++||||||..
T Consensus 35 i~~~l~g~d--vi~~a~TGsGKT~a 57 (460)
T PRK11776 35 LPAILAGKD--VIAQAKTGSGKTAA 57 (460)
T ss_pred HHHHhcCCC--EEEECCCCCcHHHH
Confidence 445678887 56788999999964
No 100
>cd00124 MYSc Myosin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila
Probab=87.37 E-value=0.68 Score=38.28 Aligned_cols=34 Identities=21% Similarity=0.242 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHhh-CCCcEEEEeecCCCCCCceEe
Q psy12526 60 VFDALGRDILDNAF-QGYNACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 60 v~~~~~~~lv~~~~-~G~n~ti~aYGqtgSGKT~Tm 94 (103)
||.-. ..-...++ .+-|-||+.-|++|||||.+.
T Consensus 69 ifavA-~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 103 (679)
T cd00124 69 VFAIA-DRAYRNMLRDRRNQSIIISGESGAGKTENT 103 (679)
T ss_pred HHHHH-HHHHHHHHhcCCCceEEEecCCCCCchHHH
Confidence 55433 23333433 588999999999999999763
No 101
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=87.34 E-value=0.69 Score=38.44 Aligned_cols=21 Identities=24% Similarity=0.411 Sum_probs=18.8
Q ss_pred CCCcEEEEeecCCCCCCceEe
Q psy12526 74 QGYNACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 74 ~G~n~ti~aYGqtgSGKT~Tm 94 (103)
.+.|-||+.-|++|||||.|.
T Consensus 91 ~~~~QsIiisGESGAGKTet~ 111 (692)
T cd01385 91 KKVNQCIVISGESGSGKTEST 111 (692)
T ss_pred cCCCceEEEecCCCCCchHHH
Confidence 588999999999999999863
No 102
>PRK06921 hypothetical protein; Provisional
Probab=87.32 E-value=0.24 Score=36.30 Aligned_cols=18 Identities=33% Similarity=0.414 Sum_probs=15.0
Q ss_pred EEEEeecCCCCCCceEec
Q psy12526 78 ACIFAYGQTGEKTNYLLN 95 (103)
Q Consensus 78 ~ti~aYGqtgSGKT~Tm~ 95 (103)
-.|+-||++|+||||.+.
T Consensus 118 ~~l~l~G~~G~GKThLa~ 135 (266)
T PRK06921 118 NSIALLGQPGSGKTHLLT 135 (266)
T ss_pred CeEEEECCCCCcHHHHHH
Confidence 457789999999999764
No 103
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins. Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr
Probab=87.20 E-value=0.79 Score=37.98 Aligned_cols=22 Identities=23% Similarity=0.342 Sum_probs=19.2
Q ss_pred hCCCcEEEEeecCCCCCCceEe
Q psy12526 73 FQGYNACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 73 ~~G~n~ti~aYGqtgSGKT~Tm 94 (103)
-.+.|-||+.-|++|||||.|.
T Consensus 82 ~~~~~QsIiisGESGaGKTes~ 103 (671)
T cd01381 82 REKKNQCIIISGESGAGKTEST 103 (671)
T ss_pred HcCCCceEEEEcCCCCCeehHH
Confidence 3588999999999999999863
No 104
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=87.18 E-value=0.42 Score=36.49 Aligned_cols=27 Identities=15% Similarity=0.267 Sum_probs=18.5
Q ss_pred HHHHHhh-CCCcEEEEeecCCCCCCceEec
Q psy12526 67 DILDNAF-QGYNACIFAYGQTGEKTNYLLN 95 (103)
Q Consensus 67 ~lv~~~~-~G~n~ti~aYGqtgSGKT~Tm~ 95 (103)
.++..+. .+.| |+.-|.||||||.+|-
T Consensus 153 ~~l~~~v~~~~n--ilI~G~tGSGKTTll~ 180 (344)
T PRK13851 153 AFLHACVVGRLT--MLLCGPTGSGKTTMSK 180 (344)
T ss_pred HHHHHHHHcCCe--EEEECCCCccHHHHHH
Confidence 4444444 3444 6679999999998764
No 105
>cd01378 MYSc_type_I Myosin motor domain, type I myosins. Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon
Probab=87.04 E-value=0.79 Score=37.96 Aligned_cols=22 Identities=18% Similarity=0.363 Sum_probs=19.3
Q ss_pred hCCCcEEEEeecCCCCCCceEe
Q psy12526 73 FQGYNACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 73 ~~G~n~ti~aYGqtgSGKT~Tm 94 (103)
-.+-|-||+.-|++|||||.|.
T Consensus 82 ~~~~~QsIiisGESGaGKTe~~ 103 (674)
T cd01378 82 SENENQCVIISGESGAGKTEAA 103 (674)
T ss_pred HcCCCceEEEEcCCCCCcchHH
Confidence 3588999999999999999863
No 106
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins. Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of
Probab=86.87 E-value=0.69 Score=38.58 Aligned_cols=22 Identities=14% Similarity=0.155 Sum_probs=19.3
Q ss_pred hCCCcEEEEeecCCCCCCceEe
Q psy12526 73 FQGYNACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 73 ~~G~n~ti~aYGqtgSGKT~Tm 94 (103)
-.+-|-||+.-|++|||||.|.
T Consensus 87 ~~~~~QsIiisGESGaGKTes~ 108 (717)
T cd01382 87 VLKMSQSIIVSGESGAGKTENT 108 (717)
T ss_pred hcCCCCeEEEecCCCCChhHHH
Confidence 3588999999999999999863
No 107
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=86.82 E-value=0.52 Score=35.69 Aligned_cols=26 Identities=23% Similarity=0.308 Sum_probs=17.9
Q ss_pred HHHHHhh-CCCcEEEEeecCCCCCCceEe
Q psy12526 67 DILDNAF-QGYNACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 67 ~lv~~~~-~G~n~ti~aYGqtgSGKT~Tm 94 (103)
.++..++ .+.| |+..|.||||||.+|
T Consensus 151 ~~L~~~v~~~~n--ili~G~tgSGKTTll 177 (332)
T PRK13900 151 EFLEHAVISKKN--IIISGGTSTGKTTFT 177 (332)
T ss_pred HHHHHHHHcCCc--EEEECCCCCCHHHHH
Confidence 3444444 3444 667999999999876
No 108
>PHA02244 ATPase-like protein
Probab=86.78 E-value=0.96 Score=35.20 Aligned_cols=36 Identities=17% Similarity=0.182 Sum_probs=22.7
Q ss_pred CHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceE
Q psy12526 56 SQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYL 93 (103)
Q Consensus 56 ~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~T 93 (103)
.+...+......+...+-.+.+..| +|++|+|||+-
T Consensus 100 g~sp~~~~~~~ri~r~l~~~~PVLL--~GppGtGKTtL 135 (383)
T PHA02244 100 ASNPTFHYETADIAKIVNANIPVFL--KGGAGSGKNHI 135 (383)
T ss_pred CCCHHHHHHHHHHHHHHhcCCCEEE--ECCCCCCHHHH
Confidence 3334444444455555556777554 89999999974
No 109
>cd01380 MYSc_type_V Myosin motor domain, type V myosins. Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act
Probab=86.75 E-value=0.76 Score=38.17 Aligned_cols=21 Identities=19% Similarity=0.230 Sum_probs=18.9
Q ss_pred hCCCcEEEEeecCCCCCCceE
Q psy12526 73 FQGYNACIFAYGQTGEKTNYL 93 (103)
Q Consensus 73 ~~G~n~ti~aYGqtgSGKT~T 93 (103)
-.+.|-||+.-|++|||||.+
T Consensus 82 ~~~~~QsIiiSGESGaGKTes 102 (691)
T cd01380 82 RDEKNQSIIVSGESGAGKTVS 102 (691)
T ss_pred hcCCCceEEEEcCCCCCchHH
Confidence 368999999999999999975
No 110
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=86.49 E-value=1 Score=29.79 Aligned_cols=16 Identities=25% Similarity=0.681 Sum_probs=13.1
Q ss_pred EEEEee-cCCCCCCceE
Q psy12526 78 ACIFAY-GQTGEKTNYL 93 (103)
Q Consensus 78 ~ti~aY-GqtgSGKT~T 93 (103)
..|+++ |.||+||+|+
T Consensus 53 pLVlSfHG~tGtGKn~v 69 (127)
T PF06309_consen 53 PLVLSFHGWTGTGKNFV 69 (127)
T ss_pred CEEEEeecCCCCcHHHH
Confidence 457777 9999999984
No 111
>PRK06547 hypothetical protein; Provisional
Probab=86.35 E-value=0.84 Score=31.29 Aligned_cols=25 Identities=16% Similarity=0.194 Sum_probs=16.6
Q ss_pred HHHhhCCCcEEEEeecCCCCCCceE
Q psy12526 69 LDNAFQGYNACIFAYGQTGEKTNYL 93 (103)
Q Consensus 69 v~~~~~G~n~ti~aYGqtgSGKT~T 93 (103)
+..+..+----|.-.|.+|||||+.
T Consensus 7 ~~~~~~~~~~~i~i~G~~GsGKTt~ 31 (172)
T PRK06547 7 AARLCGGGMITVLIDGRSGSGKTTL 31 (172)
T ss_pred HHHhhcCCCEEEEEECCCCCCHHHH
Confidence 3444444444566679999999974
No 112
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins. In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus
Probab=86.24 E-value=0.95 Score=37.54 Aligned_cols=22 Identities=18% Similarity=0.303 Sum_probs=19.3
Q ss_pred hCCCcEEEEeecCCCCCCceEe
Q psy12526 73 FQGYNACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 73 ~~G~n~ti~aYGqtgSGKT~Tm 94 (103)
-.+.|-||+.-|++|||||.|.
T Consensus 83 ~~~~~QsIiisGESGaGKTe~~ 104 (677)
T cd01387 83 DAKQNQCVIISGESGSGKTEAT 104 (677)
T ss_pred hcCCCceEEEEcCCCCCeehHH
Confidence 3588999999999999999864
No 113
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=86.19 E-value=1.2 Score=37.92 Aligned_cols=37 Identities=14% Similarity=0.256 Sum_probs=28.8
Q ss_pred HHHHHHH-HHHHHHHhhCCCcEEEEeecCCCCCCceEec
Q psy12526 58 EKVFDAL-GRDILDNAFQGYNACIFAYGQTGEKTNYLLN 95 (103)
Q Consensus 58 ~~v~~~~-~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~ 95 (103)
..-|+.. +..+++.+-+|.+=.++++ .||+|||+|.+
T Consensus 166 ~RyyQ~~AI~rv~Eaf~~g~~raLlvM-ATGTGKTrTAi 203 (875)
T COG4096 166 PRYYQIIAIRRVIEAFSKGQNRALLVM-ATGTGKTRTAI 203 (875)
T ss_pred chHHHHHHHHHHHHHHhcCCceEEEEE-ecCCCcceeHH
Confidence 3344443 4788899999999977777 89999999964
No 114
>PTZ00424 helicase 45; Provisional
Probab=86.07 E-value=0.63 Score=35.17 Aligned_cols=26 Identities=15% Similarity=0.307 Sum_probs=19.3
Q ss_pred HHHHHhhCCCcEEEEeecCCCCCCceEe
Q psy12526 67 DILDNAFQGYNACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 67 ~lv~~~~~G~n~ti~aYGqtgSGKT~Tm 94 (103)
..+..+++|.|.. ..++||||||.+.
T Consensus 57 ~ai~~i~~~~d~i--i~apTGsGKT~~~ 82 (401)
T PTZ00424 57 RGIKPILDGYDTI--GQAQSGTGKTATF 82 (401)
T ss_pred HHHHHHhCCCCEE--EECCCCChHHHHH
Confidence 3455678888854 5789999999653
No 115
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=85.58 E-value=0.65 Score=38.26 Aligned_cols=30 Identities=7% Similarity=0.152 Sum_probs=19.8
Q ss_pred HHHHHHHhhC-----CCcEEEEeecCCCCCCceEec
Q psy12526 65 GRDILDNAFQ-----GYNACIFAYGQTGEKTNYLLN 95 (103)
Q Consensus 65 ~~~lv~~~~~-----G~n~ti~aYGqtgSGKT~Tm~ 95 (103)
+..+++.+.. |.+..| -.-.||||||+||.
T Consensus 247 v~~~~~~~~~~~~~~~~~~gl-i~~~TGsGKT~t~~ 281 (667)
T TIGR00348 247 VKKIVESITRKTWGKDERGGL-IWHTQGSGKTLTML 281 (667)
T ss_pred HHHHHHHHHhcccCCCCceeE-EEEecCCCccHHHH
Confidence 3455666555 344444 35599999999996
No 116
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=85.53 E-value=0.29 Score=36.09 Aligned_cols=17 Identities=29% Similarity=0.257 Sum_probs=13.5
Q ss_pred EEEeecCCCCCCceEec
Q psy12526 79 CIFAYGQTGEKTNYLLN 95 (103)
Q Consensus 79 ti~aYGqtgSGKT~Tm~ 95 (103)
.|.-.|.||+|||+|+.
T Consensus 196 vi~~vGptGvGKTTt~~ 212 (282)
T TIGR03499 196 VIALVGPTGVGKTTTLA 212 (282)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 45556999999999864
No 117
>PHA02653 RNA helicase NPH-II; Provisional
Probab=85.34 E-value=0.84 Score=37.87 Aligned_cols=33 Identities=18% Similarity=0.093 Sum_probs=22.1
Q ss_pred CCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceE
Q psy12526 55 ASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYL 93 (103)
Q Consensus 55 ~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~T 93 (103)
+-|.++=+. ++..+++|.+ |+..|+||||||.-
T Consensus 163 ~~~~~iQ~q----il~~i~~gkd--vIv~A~TGSGKTtq 195 (675)
T PHA02653 163 SLQPDVQLK----IFEAWISRKP--VVLTGGTGVGKTSQ 195 (675)
T ss_pred chhHHHHHH----HHHHHHhCCC--EEEECCCCCCchhH
Confidence 445544443 3455667765 56899999999964
No 118
>PRK13764 ATPase; Provisional
Probab=85.23 E-value=0.38 Score=39.40 Aligned_cols=18 Identities=17% Similarity=0.254 Sum_probs=15.2
Q ss_pred EEEEeecCCCCCCceEec
Q psy12526 78 ACIFAYGQTGEKTNYLLN 95 (103)
Q Consensus 78 ~ti~aYGqtgSGKT~Tm~ 95 (103)
..|+..|.||||||+++.
T Consensus 258 ~~ILIsG~TGSGKTTll~ 275 (602)
T PRK13764 258 EGILIAGAPGAGKSTFAQ 275 (602)
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 348899999999999874
No 119
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=84.95 E-value=0.6 Score=33.21 Aligned_cols=17 Identities=24% Similarity=0.528 Sum_probs=11.8
Q ss_pred cEEEEeecCCCCCCceE
Q psy12526 77 NACIFAYGQTGEKTNYL 93 (103)
Q Consensus 77 n~ti~aYGqtgSGKT~T 93 (103)
+-.+++.|..|||||+.
T Consensus 19 ~~~v~~~G~AGTGKT~L 35 (205)
T PF02562_consen 19 NDLVIVNGPAGTGKTFL 35 (205)
T ss_dssp -SEEEEE--TTSSTTHH
T ss_pred CCeEEEECCCCCcHHHH
Confidence 33688999999999984
No 120
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=84.80 E-value=0.24 Score=35.59 Aligned_cols=20 Identities=10% Similarity=0.071 Sum_probs=14.9
Q ss_pred CcEEEEeecCCCCCCceEec
Q psy12526 76 YNACIFAYGQTGEKTNYLLN 95 (103)
Q Consensus 76 ~n~ti~aYGqtgSGKT~Tm~ 95 (103)
.+..++.-|-.|||||+||.
T Consensus 12 ~~~~~lV~a~AGSGKT~~l~ 31 (315)
T PF00580_consen 12 TEGPLLVNAGAGSGKTTTLL 31 (315)
T ss_dssp -SSEEEEEE-TTSSHHHHHH
T ss_pred CCCCEEEEeCCCCCchHHHH
Confidence 45566777889999999986
No 121
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=84.69 E-value=0.88 Score=35.51 Aligned_cols=23 Identities=22% Similarity=0.329 Sum_probs=18.0
Q ss_pred HHHhhCCCcEEEEeecCCCCCCceE
Q psy12526 69 LDNAFQGYNACIFAYGQTGEKTNYL 93 (103)
Q Consensus 69 v~~~~~G~n~ti~aYGqtgSGKT~T 93 (103)
+..+++|.| +++-.+||||||.+
T Consensus 32 i~~il~g~d--vlv~apTGsGKTla 54 (456)
T PRK10590 32 IPAVLEGRD--LMASAQTGTGKTAG 54 (456)
T ss_pred HHHHhCCCC--EEEECCCCCcHHHH
Confidence 455678887 56788999999975
No 122
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=84.57 E-value=0.82 Score=35.18 Aligned_cols=23 Identities=17% Similarity=0.329 Sum_probs=18.2
Q ss_pred HHHhhCCCcEEEEeecCCCCCCceE
Q psy12526 69 LDNAFQGYNACIFAYGQTGEKTNYL 93 (103)
Q Consensus 69 v~~~~~G~n~ti~aYGqtgSGKT~T 93 (103)
+..+++|-| +++.++||+|||..
T Consensus 32 i~~~~~g~d--~l~~apTGsGKT~~ 54 (434)
T PRK11192 32 IPPALDGRD--VLGSAPTGTGKTAA 54 (434)
T ss_pred HHHHhCCCC--EEEECCCCChHHHH
Confidence 455677877 77889999999975
No 123
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=84.53 E-value=0.53 Score=41.15 Aligned_cols=30 Identities=10% Similarity=0.051 Sum_probs=20.2
Q ss_pred HHHHHHhhCCCcEEEEeecCCCCCCceEecc
Q psy12526 66 RDILDNAFQGYNACIFAYGQTGEKTNYLLNG 96 (103)
Q Consensus 66 ~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~G 96 (103)
..+++.+.+|....+ ..-.||||||+||..
T Consensus 423 ~ai~~a~~~g~r~~L-l~maTGSGKT~tai~ 452 (1123)
T PRK11448 423 QAVEKAIVEGQREIL-LAMATGTGKTRTAIA 452 (1123)
T ss_pred HHHHHHHHhccCCeE-EEeCCCCCHHHHHHH
Confidence 344455556665444 458999999999864
No 124
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=84.52 E-value=0.99 Score=30.69 Aligned_cols=22 Identities=18% Similarity=0.273 Sum_probs=16.3
Q ss_pred HHhhCCCcEEEEeecCCCCCCceE
Q psy12526 70 DNAFQGYNACIFAYGQTGEKTNYL 93 (103)
Q Consensus 70 ~~~~~G~n~ti~aYGqtgSGKT~T 93 (103)
..+++|.| ++..++||+|||.+
T Consensus 31 ~~~~~~~~--~li~~~TG~GKT~~ 52 (203)
T cd00268 31 PPLLSGRD--VIGQAQTGSGKTAA 52 (203)
T ss_pred HHHhcCCc--EEEECCCCCcHHHH
Confidence 44455777 46689999999975
No 125
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=84.49 E-value=0.36 Score=33.43 Aligned_cols=19 Identities=26% Similarity=0.267 Sum_probs=13.8
Q ss_pred CcEEEEeecCCCCCCceEe
Q psy12526 76 YNACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 76 ~n~ti~aYGqtgSGKT~Tm 94 (103)
.-..++..|+.|||||+.+
T Consensus 14 ~P~~~i~aG~~GsGKSt~~ 32 (199)
T PF06414_consen 14 KPTLIIIAGQPGSGKSTLA 32 (199)
T ss_dssp S-EEEEEES-TTSTTHHHH
T ss_pred CCEEEEEeCCCCCCHHHHH
Confidence 3456888999999998754
No 126
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=84.20 E-value=0.83 Score=35.12 Aligned_cols=23 Identities=22% Similarity=0.242 Sum_probs=17.4
Q ss_pred HHHhhCCCcEEEEeecCCCCCCceE
Q psy12526 69 LDNAFQGYNACIFAYGQTGEKTNYL 93 (103)
Q Consensus 69 v~~~~~G~n~ti~aYGqtgSGKT~T 93 (103)
+..+++|.|. ++-++||||||.+
T Consensus 39 ip~il~g~dv--i~~ApTGsGKTla 61 (423)
T PRK04837 39 LPLTLAGRDV--AGQAQTGTGKTMA 61 (423)
T ss_pred HHHHhCCCcE--EEECCCCchHHHH
Confidence 4456888874 5567999999964
No 127
>KOG0989|consensus
Probab=84.09 E-value=0.94 Score=34.59 Aligned_cols=29 Identities=21% Similarity=0.246 Sum_probs=18.6
Q ss_pred HHHHHhhCC-CcEEEEeecCCCCCCceEec
Q psy12526 67 DILDNAFQG-YNACIFAYGQTGEKTNYLLN 95 (103)
Q Consensus 67 ~lv~~~~~G-~n~ti~aYGqtgSGKT~Tm~ 95 (103)
.++..++.+ .---.+-||+.|+|||.|..
T Consensus 46 ~~L~~a~~~~~lp~~LFyGPpGTGKTStal 75 (346)
T KOG0989|consen 46 QVLKNALLRRILPHYLFYGPPGTGKTSTAL 75 (346)
T ss_pred HHHHHHHhhcCCceEEeeCCCCCcHhHHHH
Confidence 334444443 22335779999999998853
No 128
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=83.59 E-value=0.92 Score=33.01 Aligned_cols=21 Identities=10% Similarity=0.074 Sum_probs=15.5
Q ss_pred CCCcEEEEeecCCCCCCceEe
Q psy12526 74 QGYNACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 74 ~G~n~ti~aYGqtgSGKT~Tm 94 (103)
.+...-++-||+.|+|||+.+
T Consensus 35 ~~~~~~~ll~G~~G~GKt~~~ 55 (319)
T PRK00440 35 EKNMPHLLFAGPPGTGKTTAA 55 (319)
T ss_pred CCCCCeEEEECCCCCCHHHHH
Confidence 344334678999999999754
No 129
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=83.45 E-value=0.64 Score=35.75 Aligned_cols=27 Identities=30% Similarity=0.288 Sum_probs=19.3
Q ss_pred HHHHHhhCCCcEEEEeecCCCCCCceEe
Q psy12526 67 DILDNAFQGYNACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 67 ~lv~~~~~G~n~ti~aYGqtgSGKT~Tm 94 (103)
.++..+.++. +.|+-.|=||||||.++
T Consensus 164 ~~L~~av~~r-~NILisGGTGSGKTTlL 190 (355)
T COG4962 164 KFLRRAVGIR-CNILISGGTGSGKTTLL 190 (355)
T ss_pred HHHHHHHhhc-eeEEEeCCCCCCHHHHH
Confidence 3444455544 66888999999999864
No 130
>PRK04328 hypothetical protein; Provisional
Probab=83.21 E-value=1.1 Score=32.35 Aligned_cols=26 Identities=15% Similarity=0.258 Sum_probs=20.8
Q ss_pred HHHHHhhCC---CcEEEEeecCCCCCCce
Q psy12526 67 DILDNAFQG---YNACIFAYGQTGEKTNY 92 (103)
Q Consensus 67 ~lv~~~~~G---~n~ti~aYGqtgSGKT~ 92 (103)
+-++.++.| ....++-+|..|+|||-
T Consensus 10 ~~LD~lL~GGip~gs~ili~G~pGsGKT~ 38 (249)
T PRK04328 10 PGMDEILYGGIPERNVVLLSGGPGTGKSI 38 (249)
T ss_pred hhHHHHhcCCCcCCcEEEEEcCCCCCHHH
Confidence 456777775 47888999999999964
No 131
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=82.99 E-value=0.48 Score=32.35 Aligned_cols=25 Identities=16% Similarity=0.223 Sum_probs=15.2
Q ss_pred HHhhCCCcEEEEeecCCCCCCceEec
Q psy12526 70 DNAFQGYNACIFAYGQTGEKTNYLLN 95 (103)
Q Consensus 70 ~~~~~G~n~ti~aYGqtgSGKT~Tm~ 95 (103)
..++.--. ..+..|+-|+|||+|+.
T Consensus 11 ~~~~~~~~-~~~i~GpPGTGKT~~l~ 35 (236)
T PF13086_consen 11 QSALSSNG-ITLIQGPPGTGKTTTLA 35 (236)
T ss_dssp HHHCTSSE--EEEE-STTSSHHHHHH
T ss_pred HHHHcCCC-CEEEECCCCCChHHHHH
Confidence 44443333 34568999999998764
No 132
>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the
Probab=82.94 E-value=1.4 Score=37.21 Aligned_cols=21 Identities=14% Similarity=0.195 Sum_probs=18.9
Q ss_pred CCCcEEEEeecCCCCCCceEe
Q psy12526 74 QGYNACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 74 ~G~n~ti~aYGqtgSGKT~Tm 94 (103)
.+.|-||+.-|++|||||.|.
T Consensus 83 ~~~~QsIiiSGESGAGKTe~t 103 (767)
T cd01386 83 TRRDQSIIFLGRSGAGKTTSC 103 (767)
T ss_pred cCCCceEEEecCCCCCcHHHH
Confidence 588999999999999999763
No 133
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=82.83 E-value=1.5 Score=31.80 Aligned_cols=29 Identities=21% Similarity=0.245 Sum_probs=19.5
Q ss_pred HHHHHHHHHhhCCCcEEEEeecCCCCCCceE
Q psy12526 63 ALGRDILDNAFQGYNACIFAYGQTGEKTNYL 93 (103)
Q Consensus 63 ~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~T 93 (103)
.+.+.++..+..|.+.. -+|.+|+|||..
T Consensus 9 ~l~~~~l~~l~~g~~vL--L~G~~GtGKT~l 37 (262)
T TIGR02640 9 RVTSRALRYLKSGYPVH--LRGPAGTGKTTL 37 (262)
T ss_pred HHHHHHHHHHhcCCeEE--EEcCCCCCHHHH
Confidence 33344555666676654 489999999863
No 134
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=82.46 E-value=1.3 Score=37.65 Aligned_cols=23 Identities=26% Similarity=0.302 Sum_probs=18.3
Q ss_pred HHHhhCCCcEEEEeecCCCCCCceE
Q psy12526 69 LDNAFQGYNACIFAYGQTGEKTNYL 93 (103)
Q Consensus 69 v~~~~~G~n~ti~aYGqtgSGKT~T 93 (103)
+..+.+|.|+.|.| +||||||-+
T Consensus 31 ~~~i~~G~nvLiiA--PTGsGKTeA 53 (814)
T COG1201 31 IPEIHSGENVLIIA--PTGSGKTEA 53 (814)
T ss_pred HHHHhCCCceEEEc--CCCCChHHH
Confidence 45568999987754 999999864
No 135
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=82.39 E-value=1.1 Score=35.09 Aligned_cols=25 Identities=24% Similarity=0.255 Sum_probs=19.1
Q ss_pred HHHHHhhCCCcEEEEeecCCCCCCceE
Q psy12526 67 DILDNAFQGYNACIFAYGQTGEKTNYL 93 (103)
Q Consensus 67 ~lv~~~~~G~n~ti~aYGqtgSGKT~T 93 (103)
..+..+++|.|..+ -.+||||||..
T Consensus 116 ~ai~~~~~G~dvi~--~apTGSGKTla 140 (475)
T PRK01297 116 QVLGYTLAGHDAIG--RAQTGTGKTAA 140 (475)
T ss_pred HHHHHHhCCCCEEE--ECCCCChHHHH
Confidence 45667889988654 55999999954
No 136
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=82.35 E-value=1.1 Score=36.74 Aligned_cols=23 Identities=17% Similarity=0.375 Sum_probs=17.8
Q ss_pred HHHhhCCCcEEEEeecCCCCCCceE
Q psy12526 69 LDNAFQGYNACIFAYGQTGEKTNYL 93 (103)
Q Consensus 69 v~~~~~G~n~ti~aYGqtgSGKT~T 93 (103)
+..+++|.+ |++.++||||||.+
T Consensus 37 i~~ll~g~d--vl~~ApTGsGKT~a 59 (629)
T PRK11634 37 IPHLLNGRD--VLGMAQTGSGKTAA 59 (629)
T ss_pred HHHHHcCCC--EEEEcCCCCcHHHH
Confidence 455677876 66788999999965
No 137
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=82.19 E-value=0.48 Score=36.62 Aligned_cols=18 Identities=17% Similarity=0.115 Sum_probs=14.7
Q ss_pred EEEEeecCCCCCCceEec
Q psy12526 78 ACIFAYGQTGEKTNYLLN 95 (103)
Q Consensus 78 ~ti~aYGqtgSGKT~Tm~ 95 (103)
..+.-.|.||+|||+|+.
T Consensus 138 ~ii~lvGptGvGKTTtia 155 (374)
T PRK14722 138 GVFALMGPTGVGKTTTTA 155 (374)
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 456678999999999864
No 138
>PRK10536 hypothetical protein; Provisional
Probab=82.07 E-value=0.95 Score=33.48 Aligned_cols=17 Identities=29% Similarity=0.522 Sum_probs=14.4
Q ss_pred EEEEeecCCCCCCceEe
Q psy12526 78 ACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 78 ~ti~aYGqtgSGKT~Tm 94 (103)
.-++..|..|+||||..
T Consensus 75 ~lV~i~G~aGTGKT~La 91 (262)
T PRK10536 75 QLIFATGEAGCGKTWIS 91 (262)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 37889999999999853
No 139
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=82.01 E-value=0.98 Score=31.13 Aligned_cols=17 Identities=18% Similarity=0.352 Sum_probs=14.2
Q ss_pred cEEEEeecCCCCCCceE
Q psy12526 77 NACIFAYGQTGEKTNYL 93 (103)
Q Consensus 77 n~ti~aYGqtgSGKT~T 93 (103)
...+.-+|.+|||||.-
T Consensus 12 g~i~~i~G~~GsGKT~l 28 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNI 28 (209)
T ss_pred CeEEEEECCCCCCHHHH
Confidence 56778899999999853
No 140
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=81.96 E-value=1.3 Score=30.98 Aligned_cols=27 Identities=22% Similarity=0.356 Sum_probs=20.4
Q ss_pred HHHHHhhCC---CcEEEEeecCCCCCCceE
Q psy12526 67 DILDNAFQG---YNACIFAYGQTGEKTNYL 93 (103)
Q Consensus 67 ~lv~~~~~G---~n~ti~aYGqtgSGKT~T 93 (103)
+-++.++.| ....+.-+|..|||||.-
T Consensus 6 ~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l 35 (235)
T cd01123 6 KALDELLGGGIETGSITEIFGEFGSGKTQL 35 (235)
T ss_pred hhhHhhccCCCCCCeEEEEECCCCCCHHHH
Confidence 446777775 356778899999999864
No 141
>PF10923 DUF2791: P-loop Domain of unknown function (DUF2791); InterPro: IPR021228 This is a family of proteins found in archaea and bacteria. Some of the proteins in this family are annotated as being methyl-accepting chemotaxis proteins and ATP/GTP binding proteins.
Probab=81.73 E-value=1.4 Score=34.61 Aligned_cols=38 Identities=32% Similarity=0.558 Sum_probs=28.4
Q ss_pred CHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEe
Q psy12526 56 SQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 56 ~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm 94 (103)
..+..-+.+... ++.+-+|-...-|..|.-||||||.+
T Consensus 29 Gr~~e~~~l~~~-l~~v~~G~s~~kfi~G~YGsGKTf~l 66 (416)
T PF10923_consen 29 GREREIEALDRD-LDRVADGGSSFKFIRGEYGSGKTFFL 66 (416)
T ss_pred chHHHHHHHHHH-HHHHhCCCCeEEEEEeCCCCcHHHHH
Confidence 444444444443 57788998888999999999999964
No 142
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=81.34 E-value=1.6 Score=31.79 Aligned_cols=41 Identities=27% Similarity=0.306 Sum_probs=25.2
Q ss_pred CCCCHHHHHHHHHHHHHHHhhC--CCcEEEEeecCCCCCCceEe
Q psy12526 53 NFASQEKVFDALGRDILDNAFQ--GYNACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 53 ~~~~q~~v~~~~~~~lv~~~~~--G~n~ti~aYGqtgSGKT~Tm 94 (103)
....|+++-+.+. .++..... +....++-||+.|+|||+..
T Consensus 5 ~~iG~~~~~~~l~-~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la 47 (305)
T TIGR00635 5 EFIGQEKVKEQLQ-LFIEAAKMRQEALDHLLLYGPPGLGKTTLA 47 (305)
T ss_pred HHcCHHHHHHHHH-HHHHHHHhcCCCCCeEEEECCCCCCHHHHH
Confidence 4567777776643 34443222 22223667999999999854
No 143
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=81.24 E-value=1.8 Score=34.53 Aligned_cols=29 Identities=17% Similarity=0.166 Sum_probs=19.8
Q ss_pred HHHHHHHHhhCCCcEEEEeecCCCCCCceEe
Q psy12526 64 LGRDILDNAFQGYNACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 64 ~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm 94 (103)
....++..+..+-|..+ ||..|+|||+..
T Consensus 183 ~le~l~~~L~~~~~iil--~GppGtGKT~lA 211 (459)
T PRK11331 183 TIETILKRLTIKKNIIL--QGPPGVGKTFVA 211 (459)
T ss_pred HHHHHHHHHhcCCCEEE--ECCCCCCHHHHH
Confidence 33455555556666544 999999999754
No 144
>PLN03025 replication factor C subunit; Provisional
Probab=81.22 E-value=1.3 Score=32.88 Aligned_cols=17 Identities=12% Similarity=0.143 Sum_probs=13.6
Q ss_pred EEEeecCCCCCCceEec
Q psy12526 79 CIFAYGQTGEKTNYLLN 95 (103)
Q Consensus 79 ti~aYGqtgSGKT~Tm~ 95 (103)
-++-||+.|+|||++..
T Consensus 36 ~lll~Gp~G~GKTtla~ 52 (319)
T PLN03025 36 NLILSGPPGTGKTTSIL 52 (319)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 35669999999998654
No 145
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=81.07 E-value=0.56 Score=33.85 Aligned_cols=17 Identities=12% Similarity=0.173 Sum_probs=13.9
Q ss_pred EEEEeecCCCCCCceEe
Q psy12526 78 ACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 78 ~ti~aYGqtgSGKT~Tm 94 (103)
..++-||+.|+|||++.
T Consensus 43 ~~vll~GppGtGKTtlA 59 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVA 59 (261)
T ss_pred ceEEEEcCCCCCHHHHH
Confidence 44677999999999864
No 146
>cd01379 MYSc_type_III Myosin motor domain, type III myosins. Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the
Probab=81.03 E-value=1.6 Score=36.11 Aligned_cols=21 Identities=19% Similarity=0.351 Sum_probs=18.5
Q ss_pred CCCcEEEEeecCCCCCCceEe
Q psy12526 74 QGYNACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 74 ~G~n~ti~aYGqtgSGKT~Tm 94 (103)
.+.|-||+.-|++|||||.|+
T Consensus 83 ~~~~QsIiisGESGsGKTet~ 103 (653)
T cd01379 83 YNQDQCIVISGESGSGKTESA 103 (653)
T ss_pred cCCCceEEEecCCCCCchHHH
Confidence 478899999999999999864
No 147
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=81.00 E-value=0.61 Score=35.21 Aligned_cols=22 Identities=14% Similarity=0.150 Sum_probs=17.0
Q ss_pred hhCCCcEEEEeecCCCCCCceE
Q psy12526 72 AFQGYNACIFAYGQTGEKTNYL 93 (103)
Q Consensus 72 ~~~G~n~ti~aYGqtgSGKT~T 93 (103)
+-+.---.|+-||.+|+|||++
T Consensus 146 Fg~WAPknVLFyGppGTGKTm~ 167 (368)
T COG1223 146 FGDWAPKNVLFYGPPGTGKTMM 167 (368)
T ss_pred hcccCcceeEEECCCCccHHHH
Confidence 4455566788999999999864
No 148
>KOG0335|consensus
Probab=80.84 E-value=0.79 Score=36.63 Aligned_cols=21 Identities=24% Similarity=0.273 Sum_probs=15.5
Q ss_pred hCCCcEEEEeecCCCCCCceEec
Q psy12526 73 FQGYNACIFAYGQTGEKTNYLLN 95 (103)
Q Consensus 73 ~~G~n~ti~aYGqtgSGKT~Tm~ 95 (103)
.+|.. ++|.+|||||||+--+
T Consensus 109 ~~Grd--l~acAqTGsGKT~aFL 129 (482)
T KOG0335|consen 109 SGGRD--LMACAQTGSGKTAAFL 129 (482)
T ss_pred ecCCc--eEEEccCCCcchHHHH
Confidence 44444 4899999999998543
No 149
>KOG2543|consensus
Probab=80.57 E-value=0.54 Score=36.86 Aligned_cols=18 Identities=28% Similarity=0.704 Sum_probs=14.6
Q ss_pred cEEEEeecCCCCCCceEe
Q psy12526 77 NACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 77 n~ti~aYGqtgSGKT~Tm 94 (103)
-.-|+-||.+||||||++
T Consensus 30 PS~~~iyG~sgTGKT~~~ 47 (438)
T KOG2543|consen 30 PSIVHIYGHSGTGKTYLV 47 (438)
T ss_pred ceeEEEeccCCCchhHHH
Confidence 344588999999999975
No 150
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=80.02 E-value=3.3 Score=29.23 Aligned_cols=36 Identities=19% Similarity=0.148 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHhhC-CCcEEEEeecCCCCCCceE
Q psy12526 58 EKVFDALGRDILDNAFQ-GYNACIFAYGQTGEKTNYL 93 (103)
Q Consensus 58 ~~v~~~~~~~lv~~~~~-G~n~ti~aYGqtgSGKT~T 93 (103)
+.+|..++..|....-. +..-.|---|.+|||||+.
T Consensus 13 ~~~~~~l~~~~~~~~~~~~~~~iigi~G~~GsGKTTl 49 (229)
T PRK09270 13 EAVHKPLLRRLAALQAEPQRRTIVGIAGPPGAGKSTL 49 (229)
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHH
Confidence 45666666555444433 3333444459999999974
No 151
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=79.99 E-value=1.5 Score=35.45 Aligned_cols=23 Identities=26% Similarity=0.294 Sum_probs=18.2
Q ss_pred HHHhhCCCcEEEEeecCCCCCCceE
Q psy12526 69 LDNAFQGYNACIFAYGQTGEKTNYL 93 (103)
Q Consensus 69 v~~~~~G~n~ti~aYGqtgSGKT~T 93 (103)
|..+++|.| |++-.+||||||.+
T Consensus 40 ip~~l~G~D--vi~~ApTGSGKTla 62 (572)
T PRK04537 40 LPVALPGGD--VAGQAQTGTGKTLA 62 (572)
T ss_pred HHHHhCCCC--EEEEcCCCCcHHHH
Confidence 456789988 45688999999965
No 152
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=79.92 E-value=1.4 Score=32.94 Aligned_cols=24 Identities=21% Similarity=0.195 Sum_probs=19.1
Q ss_pred hhCCCcEEEEeecCCCCCCceEec
Q psy12526 72 AFQGYNACIFAYGQTGEKTNYLLN 95 (103)
Q Consensus 72 ~~~G~n~ti~aYGqtgSGKT~Tm~ 95 (103)
....-+..++-||+.|||||.+|.
T Consensus 18 ~~~~~~~r~vL~G~~GsGKS~~L~ 41 (309)
T PF10236_consen 18 DKSSKNNRYVLTGERGSGKSVLLA 41 (309)
T ss_pred cccCCceEEEEECCCCCCHHHHHH
Confidence 344567778899999999998764
No 153
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=79.77 E-value=2.9 Score=33.21 Aligned_cols=27 Identities=26% Similarity=0.410 Sum_probs=19.4
Q ss_pred HHHHHhhCCCcEEEEeecCCCCCCceEec
Q psy12526 67 DILDNAFQGYNACIFAYGQTGEKTNYLLN 95 (103)
Q Consensus 67 ~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~ 95 (103)
.++.-+-.++|.++ .|++|+||||.-.
T Consensus 201 rl~~fve~~~Nli~--lGp~GTGKThla~ 227 (449)
T TIGR02688 201 RLLPLVEPNYNLIE--LGPKGTGKSYIYN 227 (449)
T ss_pred hhHHHHhcCCcEEE--ECCCCCCHHHHHH
Confidence 44444557788664 8999999998644
No 154
>KOG3859|consensus
Probab=79.68 E-value=0.88 Score=34.60 Aligned_cols=24 Identities=29% Similarity=0.439 Sum_probs=20.4
Q ss_pred HhhCCCcEEEEeecCCCCCCceEe
Q psy12526 71 NAFQGYNACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 71 ~~~~G~n~ti~aYGqtgSGKT~Tm 94 (103)
++-+||.--|++-|.||-||+.-|
T Consensus 36 sv~~GF~FNilCvGETg~GKsTLm 59 (406)
T KOG3859|consen 36 SVSQGFCFNILCVGETGLGKSTLM 59 (406)
T ss_pred HHhcCceEEEEEeccCCccHHHHH
Confidence 456799999999999999998643
No 155
>PTZ00014 myosin-A; Provisional
Probab=79.65 E-value=2.2 Score=36.23 Aligned_cols=20 Identities=15% Similarity=0.180 Sum_probs=18.1
Q ss_pred CCCcEEEEeecCCCCCCceE
Q psy12526 74 QGYNACIFAYGQTGEKTNYL 93 (103)
Q Consensus 74 ~G~n~ti~aYGqtgSGKT~T 93 (103)
.+.|-||+.-|++|||||.+
T Consensus 180 ~~~~QsIiiSGESGAGKTe~ 199 (821)
T PTZ00014 180 VKKSQTIIVSGESGAGKTEA 199 (821)
T ss_pred cCCCceEEEEcCCCCCchHH
Confidence 58899999999999999964
No 156
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=79.58 E-value=1.4 Score=32.32 Aligned_cols=18 Identities=6% Similarity=0.065 Sum_probs=14.6
Q ss_pred cEEEEeecCCCCCCceEe
Q psy12526 77 NACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 77 n~ti~aYGqtgSGKT~Tm 94 (103)
...++-||+.|+|||+.+
T Consensus 43 ~~~lll~G~~G~GKT~la 60 (316)
T PHA02544 43 PNMLLHSPSPGTGKTTVA 60 (316)
T ss_pred CeEEEeeCcCCCCHHHHH
Confidence 456667999999999865
No 157
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=79.55 E-value=1.9 Score=33.87 Aligned_cols=23 Identities=17% Similarity=0.316 Sum_probs=16.9
Q ss_pred HHHhhCCCcEEEEeecCCCCCCceE
Q psy12526 69 LDNAFQGYNACIFAYGQTGEKTNYL 93 (103)
Q Consensus 69 v~~~~~G~n~ti~aYGqtgSGKT~T 93 (103)
+..+++|.++ ++-.+||||||.+
T Consensus 20 i~~~l~g~dv--lv~apTGsGKTl~ 42 (470)
T TIGR00614 20 INAVLLGRDC--FVVMPTGGGKSLC 42 (470)
T ss_pred HHHHHcCCCE--EEEcCCCCcHhHH
Confidence 3456778874 5568999999964
No 158
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=79.34 E-value=1.7 Score=30.63 Aligned_cols=26 Identities=23% Similarity=0.376 Sum_probs=19.4
Q ss_pred HHHHHhhC-CC--cEEEEeecCCCCCCce
Q psy12526 67 DILDNAFQ-GY--NACIFAYGQTGEKTNY 92 (103)
Q Consensus 67 ~lv~~~~~-G~--n~ti~aYGqtgSGKT~ 92 (103)
+-++.++. |+ ...++.+|.+|+|||+
T Consensus 12 ~~LD~~l~gG~~~g~~~~i~G~~GsGKt~ 40 (234)
T PRK06067 12 EELDRKLGGGIPFPSLILIEGDHGTGKSV 40 (234)
T ss_pred HHHHHhhCCCCcCCcEEEEECCCCCChHH
Confidence 45667665 43 5677888999999976
No 159
>PRK05580 primosome assembly protein PriA; Validated
Probab=79.23 E-value=1.4 Score=36.52 Aligned_cols=34 Identities=21% Similarity=0.296 Sum_probs=21.2
Q ss_pred CCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEe
Q psy12526 54 FASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 54 ~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm 94 (103)
...|++.++.+... . ++ ..++.+|.||||||...
T Consensus 146 t~~Q~~ai~~i~~~----~--~~-~~~Ll~~~TGSGKT~v~ 179 (679)
T PRK05580 146 NPEQAAAVEAIRAA----A--GF-SPFLLDGVTGSGKTEVY 179 (679)
T ss_pred CHHHHHHHHHHHhc----c--CC-CcEEEECCCCChHHHHH
Confidence 44566555554321 1 23 34788999999999653
No 160
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=79.18 E-value=1.7 Score=35.56 Aligned_cols=27 Identities=19% Similarity=0.303 Sum_probs=20.0
Q ss_pred HHHHhhCCCcEEEEeecCCCCCCceEe
Q psy12526 68 ILDNAFQGYNACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 68 lv~~~~~G~n~ti~aYGqtgSGKT~Tm 94 (103)
++..+...+...++-||++|+|||+..
T Consensus 166 l~~~ia~~~~~~vlL~Gp~GtGKTTLA 192 (615)
T TIGR02903 166 LLAKVASPFPQHIILYGPPGVGKTTAA 192 (615)
T ss_pred HHHHHhcCCCCeEEEECCCCCCHHHHH
Confidence 344455567777888999999999754
No 161
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=79.17 E-value=1.1 Score=36.92 Aligned_cols=39 Identities=18% Similarity=0.261 Sum_probs=26.3
Q ss_pred CCCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEecc
Q psy12526 53 NFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLNG 96 (103)
Q Consensus 53 ~~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~G 96 (103)
|.-.|..-+..+ ++.+-+|-...+ .+|.||||||+||..
T Consensus 10 ~~~~Q~~ai~~l----~~~~~~~~~~~~-l~Gvtgs~kt~~~a~ 48 (655)
T TIGR00631 10 PAGDQPKAIAKL----VEGLTDGEKHQT-LLGVTGSGKTFTMAN 48 (655)
T ss_pred CChHHHHHHHHH----HHhhhcCCCcEE-EECCCCcHHHHHHHH
Confidence 677887666654 445455532222 689999999999853
No 162
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=79.14 E-value=2.1 Score=34.05 Aligned_cols=24 Identities=17% Similarity=0.282 Sum_probs=18.3
Q ss_pred HHHHhhCCCcEEEEeecCCCCCCceE
Q psy12526 68 ILDNAFQGYNACIFAYGQTGEKTNYL 93 (103)
Q Consensus 68 lv~~~~~G~n~ti~aYGqtgSGKT~T 93 (103)
.+..+++|.| +++-.+||||||..
T Consensus 151 aip~il~g~d--viv~ApTGSGKTla 174 (518)
T PLN00206 151 AIPAALSGRS--LLVSADTGSGKTAS 174 (518)
T ss_pred HHHHHhcCCC--EEEEecCCCCccHH
Confidence 3556678877 56788999999953
No 163
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=79.10 E-value=0.47 Score=35.51 Aligned_cols=13 Identities=23% Similarity=0.388 Sum_probs=11.3
Q ss_pred ecCCCCCCceEec
Q psy12526 83 YGQTGEKTNYLLN 95 (103)
Q Consensus 83 YGqtgSGKT~Tm~ 95 (103)
-|.+|||||.||-
T Consensus 33 iGpSGsGKTTtLk 45 (309)
T COG1125 33 IGPSGSGKTTTLK 45 (309)
T ss_pred ECCCCCcHHHHHH
Confidence 5999999999873
No 164
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=78.81 E-value=1.8 Score=35.16 Aligned_cols=23 Identities=17% Similarity=0.299 Sum_probs=16.6
Q ss_pred HHHhhCCCcEEEEeecCCCCCCceE
Q psy12526 69 LDNAFQGYNACIFAYGQTGEKTNYL 93 (103)
Q Consensus 69 v~~~~~G~n~ti~aYGqtgSGKT~T 93 (103)
+..+++|.++.+ -.+||+|||-+
T Consensus 34 i~~il~g~dvlv--~apTGsGKTl~ 56 (607)
T PRK11057 34 IDAVLSGRDCLV--VMPTGGGKSLC 56 (607)
T ss_pred HHHHHcCCCEEE--EcCCCchHHHH
Confidence 345567887654 57999999863
No 165
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=78.44 E-value=2.4 Score=29.61 Aligned_cols=27 Identities=22% Similarity=0.519 Sum_probs=20.0
Q ss_pred HHHHHhhC-CC--cEEEEeecCCCCCCceE
Q psy12526 67 DILDNAFQ-GY--NACIFAYGQTGEKTNYL 93 (103)
Q Consensus 67 ~lv~~~~~-G~--n~ti~aYGqtgSGKT~T 93 (103)
+-++.++. |+ ...++-+|..|+|||..
T Consensus 10 ~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l 39 (225)
T PRK09361 10 KMLDELLGGGFERGTITQIYGPPGSGKTNI 39 (225)
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHH
Confidence 45677775 43 45678899999999864
No 166
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=78.43 E-value=2.6 Score=27.56 Aligned_cols=17 Identities=18% Similarity=0.331 Sum_probs=14.1
Q ss_pred EEEEeecCCCCCCceEe
Q psy12526 78 ACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 78 ~ti~aYGqtgSGKT~Tm 94 (103)
..|+=+|.-|+|||+-.
T Consensus 16 ~vi~L~GdLGaGKTtf~ 32 (123)
T PF02367_consen 16 DVILLSGDLGAGKTTFV 32 (123)
T ss_dssp EEEEEEESTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 56788999999999744
No 167
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=78.34 E-value=0.75 Score=34.85 Aligned_cols=17 Identities=24% Similarity=0.483 Sum_probs=14.1
Q ss_pred EEEEeecCCCCCCceEe
Q psy12526 78 ACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 78 ~ti~aYGqtgSGKT~Tm 94 (103)
-.|+-||+.|+|||+.+
T Consensus 157 ~gvLL~GppGtGKT~la 173 (364)
T TIGR01242 157 KGVLLYGPPGTGKTLLA 173 (364)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 34788999999999754
No 168
>KOG2373|consensus
Probab=78.21 E-value=3 Score=32.79 Aligned_cols=28 Identities=21% Similarity=0.450 Sum_probs=20.2
Q ss_pred HHHHHhhCCC---cEEEEeecCCCCCCceEec
Q psy12526 67 DILDNAFQGY---NACIFAYGQTGEKTNYLLN 95 (103)
Q Consensus 67 ~lv~~~~~G~---n~ti~aYGqtgSGKT~Tm~ 95 (103)
|.+...+.|. .-||| -|.||||||.-|.
T Consensus 261 pvLNk~LkGhR~GElTvl-TGpTGsGKTTFls 291 (514)
T KOG2373|consen 261 PVLNKYLKGHRPGELTVL-TGPTGSGKTTFLS 291 (514)
T ss_pred hHHHHHhccCCCCceEEE-ecCCCCCceeEeh
Confidence 6667777776 34554 4999999998654
No 169
>KOG0926|consensus
Probab=77.77 E-value=1.4 Score=37.79 Aligned_cols=18 Identities=22% Similarity=0.414 Sum_probs=14.6
Q ss_pred cEEEEeecCCCCCCceEe
Q psy12526 77 NACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 77 n~ti~aYGqtgSGKT~Tm 94 (103)
|-.+..+|+||||||.-+
T Consensus 271 n~vvIIcGeTGsGKTTQv 288 (1172)
T KOG0926|consen 271 NPVVIICGETGSGKTTQV 288 (1172)
T ss_pred CCeEEEecCCCCCccccc
Confidence 455678999999999755
No 170
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=77.73 E-value=4 Score=32.24 Aligned_cols=18 Identities=17% Similarity=0.161 Sum_probs=15.0
Q ss_pred cEEEEeecCCCCCCceEe
Q psy12526 77 NACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 77 n~ti~aYGqtgSGKT~Tm 94 (103)
...|+-+|.+|+|||.|.
T Consensus 95 p~vI~lvG~~GsGKTTta 112 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTA 112 (437)
T ss_pred CeEEEEECCCCCcHHHHH
Confidence 456778899999999875
No 171
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=77.47 E-value=1.5 Score=35.35 Aligned_cols=29 Identities=21% Similarity=0.377 Sum_probs=20.0
Q ss_pred HHHHHHhhCCCc--EEEEeecCCCCCCceEe
Q psy12526 66 RDILDNAFQGYN--ACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 66 ~~lv~~~~~G~n--~ti~aYGqtgSGKT~Tm 94 (103)
+..++..+.+.. --++-+|++|+|||.|+
T Consensus 32 ~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv 62 (519)
T PF03215_consen 32 RSWLEEMFSGSSPKRILLLTGPSGCGKTTTV 62 (519)
T ss_pred HHHHHHHhccCCCcceEEEECCCCCCHHHHH
Confidence 445555554443 35677999999999876
No 172
>TIGR02746 TraC-F-type type-IV secretion system protein TraC. The protein family described here is common among the F, P and I-like type IV secretion systems. Gene symbols include TraC (F-type), TrbE/VirB4 (P-type) and TraU (I-type). The protein conyains the Walker A and B motifs and so is a putative nucleotide triphosphatase.
Probab=77.30 E-value=0.74 Score=38.24 Aligned_cols=18 Identities=17% Similarity=0.388 Sum_probs=14.3
Q ss_pred EEEEeecCCCCCCceEec
Q psy12526 78 ACIFAYGQTGEKTNYLLN 95 (103)
Q Consensus 78 ~ti~aYGqtgSGKT~Tm~ 95 (103)
.-++..|.||||||++|.
T Consensus 431 ~n~~I~G~tGsGKS~~~~ 448 (797)
T TIGR02746 431 YNIAVVGGSGAGKSFFMQ 448 (797)
T ss_pred cceEEEcCCCCCHHHHHH
Confidence 345679999999999873
No 173
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=77.29 E-value=1.7 Score=31.27 Aligned_cols=14 Identities=14% Similarity=0.228 Sum_probs=12.2
Q ss_pred eecCCCCCCceEec
Q psy12526 82 AYGQTGEKTNYLLN 95 (103)
Q Consensus 82 aYGqtgSGKT~Tm~ 95 (103)
.+|++|+|||.|+-
T Consensus 37 ~~GpagtGKtetik 50 (231)
T PF12774_consen 37 LSGPAGTGKTETIK 50 (231)
T ss_dssp EESSTTSSHHHHHH
T ss_pred CcCCCCCCchhHHH
Confidence 59999999998863
No 174
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=77.21 E-value=1.9 Score=31.74 Aligned_cols=27 Identities=19% Similarity=0.358 Sum_probs=18.3
Q ss_pred HHHHhhCCCcEEEEeecCCCCCCceEec
Q psy12526 68 ILDNAFQGYNACIFAYGQTGEKTNYLLN 95 (103)
Q Consensus 68 lv~~~~~G~n~ti~aYGqtgSGKT~Tm~ 95 (103)
+++.++.. +--++-.|++|+|||-.+.
T Consensus 25 ll~~l~~~-~~pvLl~G~~GtGKT~li~ 51 (272)
T PF12775_consen 25 LLDLLLSN-GRPVLLVGPSGTGKTSLIQ 51 (272)
T ss_dssp HHHHHHHC-TEEEEEESSTTSSHHHHHH
T ss_pred HHHHHHHc-CCcEEEECCCCCchhHHHH
Confidence 34444432 4566789999999997653
No 175
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=77.19 E-value=0.87 Score=35.65 Aligned_cols=17 Identities=24% Similarity=0.239 Sum_probs=13.6
Q ss_pred EEEeecCCCCCCceEec
Q psy12526 79 CIFAYGQTGEKTNYLLN 95 (103)
Q Consensus 79 ti~aYGqtgSGKT~Tm~ 95 (103)
.++-.|.+|+|||+|+.
T Consensus 223 ~i~~vGptGvGKTTt~~ 239 (424)
T PRK05703 223 VVALVGPTGVGKTTTLA 239 (424)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 45556999999999864
No 176
>PRK14974 cell division protein FtsY; Provisional
Probab=76.85 E-value=4.1 Score=31.04 Aligned_cols=18 Identities=17% Similarity=0.207 Sum_probs=14.9
Q ss_pred cEEEEeecCCCCCCceEe
Q psy12526 77 NACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 77 n~ti~aYGqtgSGKT~Tm 94 (103)
...|.-.|.+|+|||.|+
T Consensus 140 ~~vi~~~G~~GvGKTTti 157 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTI 157 (336)
T ss_pred CeEEEEEcCCCCCHHHHH
Confidence 356778899999999875
No 177
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=76.78 E-value=0.81 Score=35.38 Aligned_cols=17 Identities=24% Similarity=0.296 Sum_probs=14.0
Q ss_pred EEEEeecCCCCCCceEe
Q psy12526 78 ACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 78 ~ti~aYGqtgSGKT~Tm 94 (103)
--++.+|.||||||..|
T Consensus 43 ~h~~i~g~tGsGKt~~i 59 (410)
T cd01127 43 AHTMIIGTTGTGKTTQI 59 (410)
T ss_pred ccEEEEcCCCCCHHHHH
Confidence 35678999999999865
No 178
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=76.62 E-value=1.4 Score=25.55 Aligned_cols=13 Identities=15% Similarity=0.268 Sum_probs=10.6
Q ss_pred EEeecCCCCCCce
Q psy12526 80 IFAYGQTGEKTNY 92 (103)
Q Consensus 80 i~aYGqtgSGKT~ 92 (103)
.+-.|.+|||||.
T Consensus 26 tli~G~nGsGKST 38 (62)
T PF13555_consen 26 TLITGPNGSGKST 38 (62)
T ss_pred EEEECCCCCCHHH
Confidence 4458999999985
No 179
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=76.16 E-value=1.2 Score=32.05 Aligned_cols=20 Identities=15% Similarity=0.281 Sum_probs=16.1
Q ss_pred cEEEEeecCCCCCCceEecc
Q psy12526 77 NACIFAYGQTGEKTNYLLNG 96 (103)
Q Consensus 77 n~ti~aYGqtgSGKT~Tm~G 96 (103)
...++-||..|+|||+....
T Consensus 12 ~~~~liyG~~G~GKtt~a~~ 31 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKY 31 (220)
T ss_pred CcEEEEECCCCCCHHHHHHh
Confidence 34588999999999987643
No 180
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=76.15 E-value=1.2 Score=34.16 Aligned_cols=15 Identities=40% Similarity=0.565 Sum_probs=11.9
Q ss_pred EEeecCCCCCCceEe
Q psy12526 80 IFAYGQTGEKTNYLL 94 (103)
Q Consensus 80 i~aYGqtgSGKT~Tm 94 (103)
...||+|||||++-+
T Consensus 90 ~~VYGPTG~GKSqLl 104 (369)
T PF02456_consen 90 GVVYGPTGSGKSQLL 104 (369)
T ss_pred EEEECCCCCCHHHHH
Confidence 356999999998743
No 181
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=76.07 E-value=0.96 Score=30.25 Aligned_cols=16 Identities=25% Similarity=0.445 Sum_probs=12.5
Q ss_pred EEEeecCCCCCCceEe
Q psy12526 79 CIFAYGQTGEKTNYLL 94 (103)
Q Consensus 79 ti~aYGqtgSGKT~Tm 94 (103)
...-||.+|+|||..|
T Consensus 21 ~~vi~G~Ng~GKStil 36 (202)
T PF13476_consen 21 LNVIYGPNGSGKSTIL 36 (202)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred cEEEECCCCCCHHHHH
Confidence 4456999999999754
No 182
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=75.99 E-value=2 Score=33.02 Aligned_cols=36 Identities=19% Similarity=0.210 Sum_probs=22.4
Q ss_pred CHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEec
Q psy12526 56 SQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLN 95 (103)
Q Consensus 56 ~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~ 95 (103)
.|+++=..+ +..+.+-.-+-|+-.|.+|+|||+.+-
T Consensus 21 Gq~~~k~al----~~~~~~p~~~~vli~G~~GtGKs~~ar 56 (350)
T CHL00081 21 GQEEMKLAL----ILNVIDPKIGGVMIMGDRGTGKSTTIR 56 (350)
T ss_pred ChHHHHHHH----HHhccCCCCCeEEEEcCCCCCHHHHHH
Confidence 565544333 444444222357799999999998653
No 183
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=75.64 E-value=3.1 Score=32.94 Aligned_cols=18 Identities=28% Similarity=0.237 Sum_probs=14.7
Q ss_pred EEEEeecCCCCCCceEec
Q psy12526 78 ACIFAYGQTGEKTNYLLN 95 (103)
Q Consensus 78 ~ti~aYGqtgSGKT~Tm~ 95 (103)
..|.-.|++|+|||.|+.
T Consensus 242 ~vI~LVGptGvGKTTTia 259 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLA 259 (436)
T ss_pred cEEEEECCCCCcHHHHHH
Confidence 456778999999998864
No 184
>PTZ00110 helicase; Provisional
Probab=75.57 E-value=2.5 Score=33.99 Aligned_cols=23 Identities=17% Similarity=0.252 Sum_probs=17.9
Q ss_pred HHHhhCCCcEEEEeecCCCCCCceE
Q psy12526 69 LDNAFQGYNACIFAYGQTGEKTNYL 93 (103)
Q Consensus 69 v~~~~~G~n~ti~aYGqtgSGKT~T 93 (103)
+..+++|.+. ++-.+||||||.+
T Consensus 161 ip~~l~G~dv--I~~ApTGSGKTla 183 (545)
T PTZ00110 161 WPIALSGRDM--IGIAETGSGKTLA 183 (545)
T ss_pred HHHHhcCCCE--EEEeCCCChHHHH
Confidence 4567889875 4678999999975
No 185
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=75.54 E-value=2.1 Score=33.18 Aligned_cols=25 Identities=24% Similarity=0.348 Sum_probs=20.9
Q ss_pred hCCCcEEEEeecCCCCCCce---EeccC
Q psy12526 73 FQGYNACIFAYGQTGEKTNY---LLNGN 97 (103)
Q Consensus 73 ~~G~n~ti~aYGqtgSGKT~---Tm~G~ 97 (103)
-.|+.-+|+..|+.|+|||. ||+|.
T Consensus 19 k~Gi~f~im~~G~sG~GKttfiNtL~~~ 46 (373)
T COG5019 19 KKGIDFTIMVVGESGLGKTTFINTLFGT 46 (373)
T ss_pred hcCCceEEEEecCCCCchhHHHHhhhHh
Confidence 46999999999999999986 55554
No 186
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=75.52 E-value=1.7 Score=36.47 Aligned_cols=21 Identities=19% Similarity=0.295 Sum_probs=16.0
Q ss_pred CCCcEEEEeecCCCCCCceEe
Q psy12526 74 QGYNACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 74 ~G~n~ti~aYGqtgSGKT~Tm 94 (103)
.+--..++-||+.|+|||+..
T Consensus 49 ~~~~~slLL~GPpGtGKTTLA 69 (725)
T PRK13341 49 ADRVGSLILYGPPGVGKTTLA 69 (725)
T ss_pred cCCCceEEEECCCCCCHHHHH
Confidence 344446778999999999864
No 187
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=75.51 E-value=5.8 Score=28.91 Aligned_cols=39 Identities=21% Similarity=0.269 Sum_probs=26.3
Q ss_pred CCCCHHHHHHHHHHHHHHHhhCC--CcEEEEeecCCCCCCce
Q psy12526 53 NFASQEKVFDALGRDILDNAFQG--YNACIFAYGQTGEKTNY 92 (103)
Q Consensus 53 ~~~~q~~v~~~~~~~lv~~~~~G--~n~ti~aYGqtgSGKT~ 92 (103)
....|+.+-... ..+++.+... .--.++-||+.|.|||.
T Consensus 25 efiGQ~~l~~~l-~i~i~aa~~r~~~l~h~lf~GPPG~GKTT 65 (233)
T PF05496_consen 25 EFIGQEHLKGNL-KILIRAAKKRGEALDHMLFYGPPGLGKTT 65 (233)
T ss_dssp CS-S-HHHHHHH-HHHHHHHHCTTS---EEEEESSTTSSHHH
T ss_pred HccCcHHHHhhh-HHHHHHHHhcCCCcceEEEECCCccchhH
Confidence 678999998775 5677776542 23357789999999985
No 188
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=75.38 E-value=2.2 Score=31.69 Aligned_cols=28 Identities=25% Similarity=0.329 Sum_probs=18.4
Q ss_pred HHHHHHhhCCCcEEEEeecCCCCCCceEe
Q psy12526 66 RDILDNAFQGYNACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 66 ~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm 94 (103)
..++..++.+- ..++--|.||||||..|
T Consensus 134 ~~~l~~~v~~~-~~ili~G~tGsGKTTll 161 (308)
T TIGR02788 134 KEFLRLAIASR-KNIIISGGTGSGKTTFL 161 (308)
T ss_pred HHHHHHHhhCC-CEEEEECCCCCCHHHHH
Confidence 34555555432 34556899999999854
No 189
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=75.28 E-value=1.5 Score=33.32 Aligned_cols=29 Identities=21% Similarity=0.303 Sum_probs=20.6
Q ss_pred HHHHHHhhCCCcEEEEeecCCCCCCceEec
Q psy12526 66 RDILDNAFQGYNACIFAYGQTGEKTNYLLN 95 (103)
Q Consensus 66 ~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~ 95 (103)
..++..++.+ ...|+--|.||||||..|.
T Consensus 168 ~~~L~~~v~~-~~~ili~G~tGsGKTTll~ 196 (340)
T TIGR03819 168 ARLLRAIVAA-RLAFLISGGTGSGKTTLLS 196 (340)
T ss_pred HHHHHHHHhC-CCeEEEECCCCCCHHHHHH
Confidence 4556665654 3567789999999987553
No 190
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=75.25 E-value=2.7 Score=31.86 Aligned_cols=25 Identities=16% Similarity=0.158 Sum_probs=19.1
Q ss_pred HHHhhCCCcEEEEeecCCCCCCceE
Q psy12526 69 LDNAFQGYNACIFAYGQTGEKTNYL 93 (103)
Q Consensus 69 v~~~~~G~n~ti~aYGqtgSGKT~T 93 (103)
++.+.++-+..++.-..||||||..
T Consensus 6 ~~~~~~~~~~~~~i~apTGsGKT~~ 30 (357)
T TIGR03158 6 FEALQSKDADIIFNTAPTGAGKTLA 30 (357)
T ss_pred HHHHHcCCCCEEEEECCCCCCHHHH
Confidence 3455677766677889999999974
No 191
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=75.20 E-value=1.4 Score=34.12 Aligned_cols=15 Identities=27% Similarity=0.414 Sum_probs=12.5
Q ss_pred EEEEeecCCCCCCce
Q psy12526 78 ACIFAYGQTGEKTNY 92 (103)
Q Consensus 78 ~ti~aYGqtgSGKT~ 92 (103)
+-|+--|+||||||+
T Consensus 98 SNILLiGPTGsGKTl 112 (408)
T COG1219 98 SNILLIGPTGSGKTL 112 (408)
T ss_pred ccEEEECCCCCcHHH
Confidence 346779999999986
No 192
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=75.17 E-value=2.5 Score=33.77 Aligned_cols=24 Identities=17% Similarity=0.271 Sum_probs=18.2
Q ss_pred HHHHHhhCCCcEEEEeecCCCCCCce
Q psy12526 67 DILDNAFQGYNACIFAYGQTGEKTNY 92 (103)
Q Consensus 67 ~lv~~~~~G~n~ti~aYGqtgSGKT~ 92 (103)
..+..+++|.+ |++..+||||||.
T Consensus 58 ~~IP~~l~g~D--vi~~A~TGsGKT~ 81 (513)
T COG0513 58 AAIPLILAGRD--VLGQAQTGTGKTA 81 (513)
T ss_pred HHHHHHhCCCC--EEEECCCCChHHH
Confidence 34556688865 6688999999975
No 193
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=75.06 E-value=2.5 Score=31.04 Aligned_cols=25 Identities=24% Similarity=0.489 Sum_probs=18.4
Q ss_pred HHhhCCCcEE-EEeecCCCCCCceEe
Q psy12526 70 DNAFQGYNAC-IFAYGQTGEKTNYLL 94 (103)
Q Consensus 70 ~~~~~G~n~t-i~aYGqtgSGKT~Tm 94 (103)
..+++|..+- ++-||..|+|||.++
T Consensus 44 ~~Fl~G~pannvLL~G~rGtGKSSlV 69 (249)
T PF05673_consen 44 EQFLQGLPANNVLLWGARGTGKSSLV 69 (249)
T ss_pred HHHHcCCCCcceEEecCCCCCHHHHH
Confidence 4567776432 566999999998764
No 194
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=75.05 E-value=3.4 Score=34.18 Aligned_cols=37 Identities=11% Similarity=0.065 Sum_probs=23.2
Q ss_pred CCCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceE
Q psy12526 53 NFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYL 93 (103)
Q Consensus 53 ~~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~T 93 (103)
....|+.+...+.. ..-.+...-++..|+||||||-.
T Consensus 262 lt~~Q~~ai~~I~~----d~~~~~~~~~Ll~~~TGSGKT~v 298 (681)
T PRK10917 262 LTGAQKRVVAEILA----DLASPKPMNRLLQGDVGSGKTVV 298 (681)
T ss_pred CCHHHHHHHHHHHH----hhhccCCceEEEECCCCCcHHHH
Confidence 34456655555443 33334444678899999999964
No 195
>KOG0953|consensus
Probab=74.75 E-value=1.5 Score=36.01 Aligned_cols=16 Identities=25% Similarity=0.335 Sum_probs=13.8
Q ss_pred EEEeecCCCCCCceEe
Q psy12526 79 CIFAYGQTGEKTNYLL 94 (103)
Q Consensus 79 ti~aYGqtgSGKT~Tm 94 (103)
-||.-|+|.|||||.-
T Consensus 193 Ii~H~GPTNSGKTy~A 208 (700)
T KOG0953|consen 193 IIMHVGPTNSGKTYRA 208 (700)
T ss_pred EEEEeCCCCCchhHHH
Confidence 3899999999999953
No 196
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=74.64 E-value=4.7 Score=28.81 Aligned_cols=29 Identities=14% Similarity=0.045 Sum_probs=20.6
Q ss_pred HHHHHHHhhC--CCcEEEEeecCCCCCCceE
Q psy12526 65 GRDILDNAFQ--GYNACIFAYGQTGEKTNYL 93 (103)
Q Consensus 65 ~~~lv~~~~~--G~n~ti~aYGqtgSGKT~T 93 (103)
+..+.+.+.+ .-...|.-+|..|.|||..
T Consensus 5 ~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~L 35 (287)
T PF00931_consen 5 IEKLKDWLLDNSNEVRVVAIVGMGGIGKTTL 35 (287)
T ss_dssp HHHHHHHHHTTTTSSEEEEEEESTTSSHHHH
T ss_pred HHHHHHHhhCCCCCeEEEEEEcCCcCCccee
Confidence 3445555555 5566788899999999863
No 197
>TIGR03744 traC_PFL_4706 conjugative transfer ATPase, PFL_4706 family. Members of this protein family are predicted ATP-binding proteins apparently associated with DNA conjugal transfer. Members are found both in plasmids and in bacterial chromosomal regions that appear to derive from integrative elements such as conjugative transposons. More distant homologs, outside the scope of this family, include type IV secretion/conjugal transfer proteins such as TraC, VirB4 and TrsE. The granularity of this protein family definition is chosen so as to represent one distinctive clade and act as a marker through which to define and recognize the class of mobile element it serves.
Probab=74.51 E-value=0.96 Score=38.53 Aligned_cols=18 Identities=33% Similarity=0.460 Sum_probs=15.0
Q ss_pred cEEEEeecCCCCCCceEe
Q psy12526 77 NACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 77 n~ti~aYGqtgSGKT~Tm 94 (103)
|.-.+..|.||||||++|
T Consensus 475 n~n~~I~G~TGSGKS~l~ 492 (893)
T TIGR03744 475 NAHLLILGPTGAGKSATL 492 (893)
T ss_pred cccEEEECCCCCCHHHHH
Confidence 555677999999999876
No 198
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=74.25 E-value=3.6 Score=33.11 Aligned_cols=24 Identities=13% Similarity=0.133 Sum_probs=17.5
Q ss_pred HHhhCCCcEEEEeecCCCCCCceE
Q psy12526 70 DNAFQGYNACIFAYGQTGEKTNYL 93 (103)
Q Consensus 70 ~~~~~G~n~ti~aYGqtgSGKT~T 93 (103)
..++.....-|+-||++|+|||+.
T Consensus 79 ~al~~~~~~~vLi~Ge~GtGKt~l 102 (531)
T TIGR02902 79 AALCGPNPQHVIIYGPPGVGKTAA 102 (531)
T ss_pred HHHhCCCCceEEEECCCCCCHHHH
Confidence 334555556678899999999764
No 199
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=74.23 E-value=1.3 Score=33.00 Aligned_cols=40 Identities=28% Similarity=0.329 Sum_probs=23.6
Q ss_pred CCCHHHHHHHHHHHHHHHhhC--CCcEEEEeecCCCCCCceEe
Q psy12526 54 FASQEKVFDALGRDILDNAFQ--GYNACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 54 ~~~q~~v~~~~~~~lv~~~~~--G~n~ti~aYGqtgSGKT~Tm 94 (103)
...|+++-+.+. .++..... .-...++-||..|+|||+.+
T Consensus 27 ~vG~~~~~~~l~-~~l~~~~~~~~~~~~~ll~GppG~GKT~la 68 (328)
T PRK00080 27 FIGQEKVKENLK-IFIEAAKKRGEALDHVLLYGPPGLGKTTLA 68 (328)
T ss_pred hcCcHHHHHHHH-HHHHHHHhcCCCCCcEEEECCCCccHHHHH
Confidence 446666655543 33443322 22235677999999999854
No 200
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=74.18 E-value=3.8 Score=28.40 Aligned_cols=27 Identities=22% Similarity=0.378 Sum_probs=19.5
Q ss_pred HHHHHhhC-CC--cEEEEeecCCCCCCceE
Q psy12526 67 DILDNAFQ-GY--NACIFAYGQTGEKTNYL 93 (103)
Q Consensus 67 ~lv~~~~~-G~--n~ti~aYGqtgSGKT~T 93 (103)
+-++.++. |+ ...+..+|..|||||..
T Consensus 6 ~~LD~~l~GGi~~g~i~~i~G~~GsGKT~l 35 (218)
T cd01394 6 KGLDELLGGGVERGTVTQVYGPPGTGKTNI 35 (218)
T ss_pred hHHHHHhcCCccCCeEEEEECCCCCCHHHH
Confidence 34567775 44 34577899999999864
No 201
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=74.13 E-value=0.82 Score=32.19 Aligned_cols=13 Identities=15% Similarity=0.383 Sum_probs=11.1
Q ss_pred eecCCCCCCceEe
Q psy12526 82 AYGQTGEKTNYLL 94 (103)
Q Consensus 82 aYGqtgSGKT~Tm 94 (103)
-.|++|||||.+|
T Consensus 30 ivGpNGaGKSTll 42 (212)
T cd03274 30 IVGPNGSGKSNVI 42 (212)
T ss_pred EECCCCCCHHHHH
Confidence 4699999999876
No 202
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=74.12 E-value=1.1 Score=35.77 Aligned_cols=18 Identities=17% Similarity=0.115 Sum_probs=14.1
Q ss_pred EEEEeecCCCCCCceEec
Q psy12526 78 ACIFAYGQTGEKTNYLLN 95 (103)
Q Consensus 78 ~ti~aYGqtgSGKT~Tm~ 95 (103)
..+.-.|.||+|||.|+.
T Consensus 257 ~Vi~LvGpnGvGKTTTia 274 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTA 274 (484)
T ss_pred cEEEEECCCCccHHHHHH
Confidence 345566999999999864
No 203
>PRK04195 replication factor C large subunit; Provisional
Probab=73.93 E-value=3.2 Score=32.73 Aligned_cols=29 Identities=21% Similarity=0.464 Sum_probs=19.9
Q ss_pred HHHHHHhhCCC-cEEEEeecCCCCCCceEe
Q psy12526 66 RDILDNAFQGY-NACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 66 ~~lv~~~~~G~-n~ti~aYGqtgSGKT~Tm 94 (103)
...+....+|. .-.++-||+.|+|||+..
T Consensus 27 ~~~l~~~~~g~~~~~lLL~GppG~GKTtla 56 (482)
T PRK04195 27 REWIESWLKGKPKKALLLYGPPGVGKTSLA 56 (482)
T ss_pred HHHHHHHhcCCCCCeEEEECCCCCCHHHHH
Confidence 34445544554 446788999999999754
No 204
>PRK06696 uridine kinase; Validated
Probab=73.87 E-value=6.2 Score=27.70 Aligned_cols=34 Identities=15% Similarity=0.090 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCce
Q psy12526 58 EKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNY 92 (103)
Q Consensus 58 ~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~ 92 (103)
.++.+.++..++. ...+...-|.--|.+|||||+
T Consensus 4 ~~~~~~la~~~~~-~~~~~~~iI~I~G~sgsGKST 37 (223)
T PRK06696 4 KQLIKELAEHILT-LNLTRPLRVAIDGITASGKTT 37 (223)
T ss_pred HHHHHHHHHHHHH-hCCCCceEEEEECCCCCCHHH
Confidence 4455555544332 223445566777999999987
No 205
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=73.86 E-value=1 Score=33.41 Aligned_cols=12 Identities=33% Similarity=0.531 Sum_probs=10.5
Q ss_pred ecCCCCCCceEe
Q psy12526 83 YGQTGEKTNYLL 94 (103)
Q Consensus 83 YGqtgSGKT~Tm 94 (103)
.|.+|+|||.+|
T Consensus 37 lG~NGAGKTTll 48 (293)
T COG1131 37 LGPNGAGKTTLL 48 (293)
T ss_pred ECCCCCCHHHHH
Confidence 499999999865
No 206
>PRK01172 ski2-like helicase; Provisional
Probab=73.83 E-value=2.8 Score=34.39 Aligned_cols=22 Identities=14% Similarity=0.188 Sum_probs=16.0
Q ss_pred HHhhCCCcEEEEeecCCCCCCceE
Q psy12526 70 DNAFQGYNACIFAYGQTGEKTNYL 93 (103)
Q Consensus 70 ~~~~~G~n~ti~aYGqtgSGKT~T 93 (103)
..+++|-| ++.-++||||||..
T Consensus 32 ~~l~~~~n--vlv~apTGSGKTl~ 53 (674)
T PRK01172 32 EQLRKGEN--VIVSVPTAAGKTLI 53 (674)
T ss_pred HHHhcCCc--EEEECCCCchHHHH
Confidence 34466776 45678999999963
No 207
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=73.71 E-value=1 Score=33.85 Aligned_cols=27 Identities=22% Similarity=0.123 Sum_probs=19.1
Q ss_pred HHHHHhhCCCcEEEEeecCCCCCCceEec
Q psy12526 67 DILDNAFQGYNACIFAYGQTGEKTNYLLN 95 (103)
Q Consensus 67 ~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~ 95 (103)
-|...+-.+.| |+-.|.||||||..|.
T Consensus 135 yL~~~ie~~~s--iii~G~t~sGKTt~ln 161 (312)
T COG0630 135 YLWLAIEARKS--IIICGGTASGKTTLLN 161 (312)
T ss_pred HHHHHHHcCCc--EEEECCCCCCHHHHHH
Confidence 34444555554 6779999999998763
No 208
>PRK13342 recombination factor protein RarA; Reviewed
Probab=73.70 E-value=2.8 Score=32.35 Aligned_cols=40 Identities=18% Similarity=0.304 Sum_probs=23.0
Q ss_pred CCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEe
Q psy12526 54 FASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 54 ~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm 94 (103)
...|+.+... ...+...+-.+.-..++-||+.|+|||+..
T Consensus 14 ~vGq~~~v~~-~~~L~~~i~~~~~~~ilL~GppGtGKTtLA 53 (413)
T PRK13342 14 VVGQEHLLGP-GKPLRRMIEAGRLSSMILWGPPGTGKTTLA 53 (413)
T ss_pred hcCcHHHhCc-chHHHHHHHcCCCceEEEECCCCCCHHHHH
Confidence 3455555433 122333333444446666999999999754
No 209
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=73.57 E-value=4.7 Score=30.35 Aligned_cols=18 Identities=17% Similarity=0.233 Sum_probs=13.9
Q ss_pred EEEEeecCCCCCCceEec
Q psy12526 78 ACIFAYGQTGEKTNYLLN 95 (103)
Q Consensus 78 ~ti~aYGqtgSGKT~Tm~ 95 (103)
-.|.-.|.+|+|||.|+.
T Consensus 115 ~vi~lvGpnGsGKTTt~~ 132 (318)
T PRK10416 115 FVILVVGVNGVGKTTTIG 132 (318)
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 355566999999998753
No 210
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=73.24 E-value=3.3 Score=33.39 Aligned_cols=23 Identities=13% Similarity=0.271 Sum_probs=17.0
Q ss_pred HHHhhCCCcEEEEeecCCCCCCceE
Q psy12526 69 LDNAFQGYNACIFAYGQTGEKTNYL 93 (103)
Q Consensus 69 v~~~~~G~n~ti~aYGqtgSGKT~T 93 (103)
+..+++|.|+ ++-.+||+|||..
T Consensus 22 i~~il~g~dv--lv~~PTG~GKTl~ 44 (591)
T TIGR01389 22 ISHVLDGRDV--LVVMPTGGGKSLC 44 (591)
T ss_pred HHHHHcCCCE--EEEcCCCccHhHH
Confidence 4455788874 5567999999875
No 211
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=72.92 E-value=4.1 Score=28.25 Aligned_cols=28 Identities=21% Similarity=0.319 Sum_probs=19.9
Q ss_pred HHHHHhhC-CC--cEEEEeecCCCCCCceEe
Q psy12526 67 DILDNAFQ-GY--NACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 67 ~lv~~~~~-G~--n~ti~aYGqtgSGKT~Tm 94 (103)
+-++.++. |+ ...+.-+|.+|+|||..+
T Consensus 6 ~~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~ 36 (226)
T cd01393 6 KALDELLGGGIPTGRITEIFGEFGSGKTQLC 36 (226)
T ss_pred HHHHHHhCCCCcCCcEEEEeCCCCCChhHHH
Confidence 45677775 43 445677999999998744
No 212
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=72.90 E-value=3.8 Score=29.10 Aligned_cols=26 Identities=15% Similarity=0.321 Sum_probs=19.1
Q ss_pred HHHHHhhC-CC--cEEEEeecCCCCCCce
Q psy12526 67 DILDNAFQ-GY--NACIFAYGQTGEKTNY 92 (103)
Q Consensus 67 ~lv~~~~~-G~--n~ti~aYGqtgSGKT~ 92 (103)
+-++.++. |+ ..+++-+|..|+|||.
T Consensus 8 ~~LD~~l~GG~~~gs~~lI~G~pGsGKT~ 36 (237)
T TIGR03877 8 PGMDEILHGGIPERNVVLLSGGPGTGKSI 36 (237)
T ss_pred HhHHHHhcCCCcCCeEEEEEcCCCCCHHH
Confidence 34566554 44 5778899999999975
No 213
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=72.85 E-value=3.9 Score=33.45 Aligned_cols=37 Identities=11% Similarity=0.107 Sum_probs=22.3
Q ss_pred CCCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceE
Q psy12526 53 NFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYL 93 (103)
Q Consensus 53 ~~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~T 93 (103)
....|+.+...+.. ..-.....-++.-|.||||||..
T Consensus 236 lt~~Q~~ai~~I~~----~~~~~~~~~~Ll~g~TGSGKT~v 272 (630)
T TIGR00643 236 LTRAQKRVVKEILQ----DLKSDVPMNRLLQGDVGSGKTLV 272 (630)
T ss_pred CCHHHHHHHHHHHH----HhccCCCccEEEECCCCCcHHHH
Confidence 34456655555443 32233334467899999999974
No 214
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=72.81 E-value=1.7 Score=33.47 Aligned_cols=16 Identities=25% Similarity=0.538 Sum_probs=13.5
Q ss_pred EEEEeecCCCCCCceE
Q psy12526 78 ACIFAYGQTGEKTNYL 93 (103)
Q Consensus 78 ~ti~aYGqtgSGKT~T 93 (103)
..|+-||+.|+|||+.
T Consensus 166 ~gvLL~GppGtGKT~l 181 (389)
T PRK03992 166 KGVLLYGPPGTGKTLL 181 (389)
T ss_pred CceEEECCCCCChHHH
Confidence 4578899999999975
No 215
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=72.55 E-value=3.2 Score=30.08 Aligned_cols=16 Identities=13% Similarity=0.094 Sum_probs=13.8
Q ss_pred cEEEEeecCCCCCCce
Q psy12526 77 NACIFAYGQTGEKTNY 92 (103)
Q Consensus 77 n~ti~aYGqtgSGKT~ 92 (103)
..+++-+|.+|+|||.
T Consensus 36 gs~~lI~G~pGtGKT~ 51 (259)
T TIGR03878 36 YSVINITGVSDTGKSL 51 (259)
T ss_pred CcEEEEEcCCCCCHHH
Confidence 5678889999999985
No 216
>PHA01747 putative ATP-dependent protease
Probab=72.21 E-value=3 Score=32.73 Aligned_cols=29 Identities=7% Similarity=0.107 Sum_probs=21.9
Q ss_pred HHHHHHhhCCCcEEEEeecCCCCCCceEe
Q psy12526 66 RDILDNAFQGYNACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 66 ~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm 94 (103)
.|+++....+-|.-++=.|+-|+||||+-
T Consensus 179 iPlVE~~~~~~NyNliELgPRGTGKS~~f 207 (425)
T PHA01747 179 LPLFTSPVSKRPVHIIELSNRGTGKTTTF 207 (425)
T ss_pred hhheeccCCCCCeeEEEecCCCCChhhHH
Confidence 36666545566777788999999999964
No 217
>PRK13767 ATP-dependent helicase; Provisional
Probab=71.99 E-value=3.4 Score=35.19 Aligned_cols=22 Identities=23% Similarity=0.212 Sum_probs=16.6
Q ss_pred HHhhCCCcEEEEeecCCCCCCceE
Q psy12526 70 DNAFQGYNACIFAYGQTGEKTNYL 93 (103)
Q Consensus 70 ~~~~~G~n~ti~aYGqtgSGKT~T 93 (103)
..+++|.|+.| -.+||||||..
T Consensus 42 ~~il~g~nvli--~APTGSGKTla 63 (876)
T PRK13767 42 PLIHEGKNVLI--SSPTGSGKTLA 63 (876)
T ss_pred HHHHcCCCEEE--ECCCCCcHHHH
Confidence 34578888655 67999999974
No 218
>KOG0340|consensus
Probab=71.84 E-value=2.7 Score=32.85 Aligned_cols=27 Identities=11% Similarity=0.273 Sum_probs=21.3
Q ss_pred HHHHHhhCCCcEEEEeecCCCCCCceEec
Q psy12526 67 DILDNAFQGYNACIFAYGQTGEKTNYLLN 95 (103)
Q Consensus 67 ~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~ 95 (103)
.+|..+|+|-+| +....||||||.-.-
T Consensus 36 ~cIpkILeGrdc--ig~AkTGsGKT~AFa 62 (442)
T KOG0340|consen 36 ACIPKILEGRDC--IGCAKTGSGKTAAFA 62 (442)
T ss_pred hhhHHHhccccc--ccccccCCCcchhhh
Confidence 457788999986 467899999997543
No 219
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=71.80 E-value=3.8 Score=28.63 Aligned_cols=28 Identities=18% Similarity=0.318 Sum_probs=19.6
Q ss_pred HHHHHhhC-CC--cEEEEeecCCCCCCceEe
Q psy12526 67 DILDNAFQ-GY--NACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 67 ~lv~~~~~-G~--n~ti~aYGqtgSGKT~Tm 94 (103)
+-++.++. |+ ...++-+|.+|+|||...
T Consensus 7 ~~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~ 37 (229)
T TIGR03881 7 EGLDKLLEGGIPRGFFVAVTGEPGTGKTIFC 37 (229)
T ss_pred hhHHHhhcCCCcCCeEEEEECCCCCChHHHH
Confidence 34566653 44 566778999999998743
No 220
>PRK13531 regulatory ATPase RavA; Provisional
Probab=71.52 E-value=3.8 Score=32.99 Aligned_cols=28 Identities=25% Similarity=0.307 Sum_probs=19.8
Q ss_pred HHHHHHHHhhCCCcEEEEeecCCCCCCceE
Q psy12526 64 LGRDILDNAFQGYNACIFAYGQTGEKTNYL 93 (103)
Q Consensus 64 ~~~~lv~~~~~G~n~ti~aYGqtgSGKT~T 93 (103)
.++-++..++.|-+ |+-+|..|+|||+.
T Consensus 28 vI~lll~aalag~h--VLL~GpPGTGKT~L 55 (498)
T PRK13531 28 AIRLCLLAALSGES--VFLLGPPGIAKSLI 55 (498)
T ss_pred HHHHHHHHHccCCC--EEEECCCChhHHHH
Confidence 34445566676766 45699999999874
No 221
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=71.30 E-value=4.7 Score=31.93 Aligned_cols=18 Identities=22% Similarity=0.372 Sum_probs=14.2
Q ss_pred EEEEeecCCCCCCceEec
Q psy12526 78 ACIFAYGQTGEKTNYLLN 95 (103)
Q Consensus 78 ~ti~aYGqtgSGKT~Tm~ 95 (103)
..++..|.+|+|||.|+.
T Consensus 224 ~vi~lvGptGvGKTTtaa 241 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIA 241 (432)
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 456677999999998753
No 222
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=71.29 E-value=2.2 Score=29.09 Aligned_cols=19 Identities=16% Similarity=0.279 Sum_probs=15.5
Q ss_pred CCCcEEEEeecCCCCCCce
Q psy12526 74 QGYNACIFAYGQTGEKTNY 92 (103)
Q Consensus 74 ~G~n~ti~aYGqtgSGKT~ 92 (103)
.-++..|+-+|++|+||+.
T Consensus 19 a~~~~pVlI~GE~GtGK~~ 37 (168)
T PF00158_consen 19 ASSDLPVLITGETGTGKEL 37 (168)
T ss_dssp TTSTS-EEEECSTTSSHHH
T ss_pred hCCCCCEEEEcCCCCcHHH
Confidence 4677889999999999975
No 223
>PRK10865 protein disaggregation chaperone; Provisional
Probab=71.24 E-value=4 Score=34.78 Aligned_cols=38 Identities=18% Similarity=0.308 Sum_probs=22.8
Q ss_pred CHHHHHHHHHHHHHHHhhCCCc------EEEEeecCCCCCCceEe
Q psy12526 56 SQEKVFDALGRDILDNAFQGYN------ACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 56 ~q~~v~~~~~~~lv~~~~~G~n------~ti~aYGqtgSGKT~Tm 94 (103)
.|...-..+... |..+..|.. +.++-.|++|+|||++.
T Consensus 572 GQ~~ai~~l~~~-i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA 615 (857)
T PRK10865 572 GQNEAVEAVSNA-IRRSRAGLSDPNRPIGSFLFLGPTGVGKTELC 615 (857)
T ss_pred CCHHHHHHHHHH-HHHHHhcccCCCCCCceEEEECCCCCCHHHHH
Confidence 455454444433 333333332 56778899999999854
No 224
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=71.08 E-value=2.5 Score=31.02 Aligned_cols=29 Identities=21% Similarity=0.430 Sum_probs=21.5
Q ss_pred HhhCCCcEEE------EeecCCCCCCc---eEeccCCC
Q psy12526 71 NAFQGYNACI------FAYGQTGEKTN---YLLNGNGP 99 (103)
Q Consensus 71 ~~~~G~n~ti------~aYGqtgSGKT---~Tm~G~~~ 99 (103)
.+++|.|-+| --.|++||||+ ||++|.+.
T Consensus 18 eILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~ 55 (251)
T COG0396 18 EILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPK 55 (251)
T ss_pred hhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4677888776 34799999996 57888653
No 225
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=70.62 E-value=1.7 Score=27.86 Aligned_cols=16 Identities=19% Similarity=0.270 Sum_probs=12.2
Q ss_pred EEEeecCCCCCCceEe
Q psy12526 79 CIFAYGQTGEKTNYLL 94 (103)
Q Consensus 79 ti~aYGqtgSGKT~Tm 94 (103)
.+.-.|++|||||..+
T Consensus 17 ~v~I~GpSGsGKSTLl 32 (107)
T cd00820 17 GVLITGDSGIGKTELA 32 (107)
T ss_pred EEEEEcCCCCCHHHHH
Confidence 3445799999999754
No 226
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=70.32 E-value=3.7 Score=29.44 Aligned_cols=24 Identities=21% Similarity=0.447 Sum_probs=17.1
Q ss_pred HHHhhCC-C--cEEEEeecCCCCCCce
Q psy12526 69 LDNAFQG-Y--NACIFAYGQTGEKTNY 92 (103)
Q Consensus 69 v~~~~~G-~--n~ti~aYGqtgSGKT~ 92 (103)
++.++.| + +..++.+|..|||||-
T Consensus 12 lD~~l~GG~p~g~~~lI~G~pGsGKT~ 38 (260)
T COG0467 12 LDEILGGGLPRGSVVLITGPPGTGKTI 38 (260)
T ss_pred hHHHhcCCCcCCcEEEEEcCCCCcHHH
Confidence 4445543 2 5678889999999974
No 227
>TIGR00929 VirB4_CagE type IV secretion/conjugal transfer ATPase, VirB4 family. Type IV secretion systems are found in Gram-negative pathogens. They export proteins, DNA, or complexes in different systems and are related to plasmid conjugation systems. This model represents related ATPases that include VirB4 in Agrobacterium tumefaciens (DNA export) CagE in Helicobacter pylori (protein export) and plasmid TraB (conjugation).
Probab=70.25 E-value=1.5 Score=36.29 Aligned_cols=18 Identities=28% Similarity=0.431 Sum_probs=15.0
Q ss_pred cEEEEeecCCCCCCceEe
Q psy12526 77 NACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 77 n~ti~aYGqtgSGKT~Tm 94 (103)
|.-++..|.||||||++|
T Consensus 434 ~~n~~I~G~tGsGKS~~~ 451 (785)
T TIGR00929 434 LGHTLIFGPTGSGKTTLL 451 (785)
T ss_pred CceEEEECCCCCCHHHHH
Confidence 555677999999999876
No 228
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=69.99 E-value=5.2 Score=33.99 Aligned_cols=27 Identities=15% Similarity=0.180 Sum_probs=18.9
Q ss_pred HHHHHHhhCCCcEEEEeecCCCCCCceEe
Q psy12526 66 RDILDNAFQGYNACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 66 ~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm 94 (103)
..+++.+.++-+ |+..|+||||||..+
T Consensus 11 ~~i~~~l~~~~~--vvv~A~TGSGKTt~~ 37 (812)
T PRK11664 11 PELLTALKTAPQ--VLLKAPTGAGKSTWL 37 (812)
T ss_pred HHHHHHHHhCCC--EEEEcCCCCCHHHHH
Confidence 456666655444 567999999999643
No 229
>CHL00181 cbbX CbbX; Provisional
Probab=69.89 E-value=2 Score=31.80 Aligned_cols=14 Identities=14% Similarity=0.199 Sum_probs=12.0
Q ss_pred EEeecCCCCCCceE
Q psy12526 80 IFAYGQTGEKTNYL 93 (103)
Q Consensus 80 i~aYGqtgSGKT~T 93 (103)
++-+|.+|+|||+.
T Consensus 62 ill~G~pGtGKT~l 75 (287)
T CHL00181 62 MSFTGSPGTGKTTV 75 (287)
T ss_pred EEEECCCCCCHHHH
Confidence 56699999999974
No 230
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=69.85 E-value=4.9 Score=29.65 Aligned_cols=27 Identities=22% Similarity=0.322 Sum_probs=19.3
Q ss_pred HHHHHhhCCC---cEEEEeecCCCCCCceE
Q psy12526 67 DILDNAFQGY---NACIFAYGQTGEKTNYL 93 (103)
Q Consensus 67 ~lv~~~~~G~---n~ti~aYGqtgSGKT~T 93 (103)
+-++.++.|- ...+.-||..|+|||.-
T Consensus 82 ~~lD~~l~GGi~~g~i~ei~G~~g~GKT~l 111 (310)
T TIGR02236 82 KELDELLGGGIETQAITEVFGEFGSGKTQI 111 (310)
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHH
Confidence 4456666642 45667899999999863
No 231
>PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein. It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A.
Probab=69.77 E-value=1.2 Score=34.21 Aligned_cols=16 Identities=25% Similarity=0.416 Sum_probs=12.0
Q ss_pred EEeecCCCCCCceEec
Q psy12526 80 IFAYGQTGEKTNYLLN 95 (103)
Q Consensus 80 i~aYGqtgSGKT~Tm~ 95 (103)
++..|.+|||||..|.
T Consensus 18 ~li~G~~GsGKT~~i~ 33 (386)
T PF10412_consen 18 ILIIGATGSGKTQAIR 33 (386)
T ss_dssp EEEEE-TTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 5679999999997553
No 232
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=69.72 E-value=5.2 Score=31.48 Aligned_cols=36 Identities=14% Similarity=0.236 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHhhC----CCcEEEEeecCCCCCCceE
Q psy12526 58 EKVFDALGRDILDNAFQ----GYNACIFAYGQTGEKTNYL 93 (103)
Q Consensus 58 ~~v~~~~~~~lv~~~~~----G~n~ti~aYGqtgSGKT~T 93 (103)
....+.++..+...++. -.---|+-||..|.|||+.
T Consensus 125 p~f~dk~~~hi~kn~l~~~~ik~PlgllL~GPPGcGKTll 164 (413)
T PLN00020 125 PAFMDKVAVHIAKNFLALPNIKVPLILGIWGGKGQGKSFQ 164 (413)
T ss_pred HHHHHHHHHHHHhhhhhccCCCCCeEEEeeCCCCCCHHHH
Confidence 44555555566666553 2223466799999999874
No 233
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=69.30 E-value=2.2 Score=29.84 Aligned_cols=24 Identities=21% Similarity=0.419 Sum_probs=18.0
Q ss_pred HHHhhC-CC--cEEEEeecCCCCCCce
Q psy12526 69 LDNAFQ-GY--NACIFAYGQTGEKTNY 92 (103)
Q Consensus 69 v~~~~~-G~--n~ti~aYGqtgSGKT~ 92 (103)
++.++. |+ +..++..|.+|||||.
T Consensus 8 LD~~l~GGip~gs~~li~G~~GsGKT~ 34 (226)
T PF06745_consen 8 LDELLGGGIPKGSVVLISGPPGSGKTT 34 (226)
T ss_dssp HHHHTTTSEETTSEEEEEESTTSSHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCCcHH
Confidence 455563 33 6788899999999974
No 234
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=69.28 E-value=1 Score=38.98 Aligned_cols=14 Identities=21% Similarity=0.328 Sum_probs=11.5
Q ss_pred ecCCCCCCceEecc
Q psy12526 83 YGQTGEKTNYLLNG 96 (103)
Q Consensus 83 YGqtgSGKT~Tm~G 96 (103)
-=+||+||||||.+
T Consensus 65 ~M~TGtGKT~~~~~ 78 (986)
T PRK15483 65 KMETGTGKTYVYTR 78 (986)
T ss_pred EeCCCCCHHHHHHH
Confidence 34899999998765
No 235
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=69.27 E-value=2.1 Score=31.59 Aligned_cols=16 Identities=13% Similarity=0.133 Sum_probs=13.2
Q ss_pred EEEeecCCCCCCceEe
Q psy12526 79 CIFAYGQTGEKTNYLL 94 (103)
Q Consensus 79 ti~aYGqtgSGKT~Tm 94 (103)
-|+-+|.+|+|||+..
T Consensus 60 ~vll~G~pGTGKT~lA 75 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVA 75 (284)
T ss_pred eEEEEcCCCCCHHHHH
Confidence 4677999999999854
No 236
>KOG1547|consensus
Probab=69.27 E-value=8.5 Score=28.84 Aligned_cols=30 Identities=17% Similarity=0.292 Sum_probs=21.8
Q ss_pred HHHHHHHHHh-hCCCcEEEEeecCCCCCCce
Q psy12526 63 ALGRDILDNA-FQGYNACIFAYGQTGEKTNY 92 (103)
Q Consensus 63 ~~~~~lv~~~-~~G~n~ti~aYGqtgSGKT~ 92 (103)
.+...+=..+ -.||.--|+.-||+|.||+.
T Consensus 31 tI~~Qm~~k~mk~GF~FNIMVVgqSglgkst 61 (336)
T KOG1547|consen 31 TIIEQMRKKTMKTGFDFNIMVVGQSGLGKST 61 (336)
T ss_pred HHHHHHHHHHHhccCceEEEEEecCCCCchh
Confidence 3333333333 46999999999999999975
No 237
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=69.01 E-value=1.9 Score=27.91 Aligned_cols=19 Identities=16% Similarity=0.301 Sum_probs=14.4
Q ss_pred CCcEEEEeecCCCCCCceE
Q psy12526 75 GYNACIFAYGQTGEKTNYL 93 (103)
Q Consensus 75 G~n~ti~aYGqtgSGKT~T 93 (103)
..+.-|+-+|+.||||++.
T Consensus 19 ~~~~pvli~GE~GtGK~~~ 37 (138)
T PF14532_consen 19 KSSSPVLITGEPGTGKSLL 37 (138)
T ss_dssp CSSS-EEEECCTTSSHHHH
T ss_pred CCCCcEEEEcCCCCCHHHH
Confidence 4556677899999999874
No 238
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=68.98 E-value=1.1 Score=34.39 Aligned_cols=13 Identities=31% Similarity=0.447 Sum_probs=11.3
Q ss_pred ecCCCCCCceEec
Q psy12526 83 YGQTGEKTNYLLN 95 (103)
Q Consensus 83 YGqtgSGKT~Tm~ 95 (103)
.|++|||||.+|.
T Consensus 37 LGPSGcGKTTlLR 49 (352)
T COG3842 37 LGPSGCGKTTLLR 49 (352)
T ss_pred ECCCCCCHHHHHH
Confidence 6999999998764
No 239
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=68.97 E-value=2.2 Score=33.78 Aligned_cols=16 Identities=19% Similarity=0.337 Sum_probs=13.6
Q ss_pred EEEeecCCCCCCceEe
Q psy12526 79 CIFAYGQTGEKTNYLL 94 (103)
Q Consensus 79 ti~aYGqtgSGKT~Tm 94 (103)
.++-||+.|+|||+.+
T Consensus 90 giLL~GppGtGKT~la 105 (495)
T TIGR01241 90 GVLLVGPPGTGKTLLA 105 (495)
T ss_pred cEEEECCCCCCHHHHH
Confidence 4778999999999864
No 240
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=68.93 E-value=2 Score=36.29 Aligned_cols=18 Identities=17% Similarity=0.132 Sum_probs=14.5
Q ss_pred EEEEeecCCCCCCceEec
Q psy12526 78 ACIFAYGQTGEKTNYLLN 95 (103)
Q Consensus 78 ~ti~aYGqtgSGKT~Tm~ 95 (103)
..|.-.|.||+|||.|+.
T Consensus 186 ~Vi~lVGpnGvGKTTTia 203 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTA 203 (767)
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 456667999999999863
No 241
>PHA02624 large T antigen; Provisional
Probab=68.87 E-value=5.3 Score=33.18 Aligned_cols=27 Identities=19% Similarity=0.164 Sum_probs=20.3
Q ss_pred HHHHHhhCCCcE--EEEeecCCCCCCceE
Q psy12526 67 DILDNAFQGYNA--CIFAYGQTGEKTNYL 93 (103)
Q Consensus 67 ~lv~~~~~G~n~--ti~aYGqtgSGKT~T 93 (103)
.+++.++.|..- |++-||+-|||||+-
T Consensus 419 ~~lk~~l~giPKk~~il~~GPpnTGKTtf 447 (647)
T PHA02624 419 DILKLIVENVPKRRYWLFKGPVNSGKTTL 447 (647)
T ss_pred HHHHHHHhcCCCCeEEEEECCCCCCHHHH
Confidence 345566666644 889999999999873
No 242
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=68.84 E-value=1.8 Score=33.98 Aligned_cols=18 Identities=17% Similarity=0.075 Sum_probs=14.6
Q ss_pred EEEEeecCCCCCCceEec
Q psy12526 78 ACIFAYGQTGEKTNYLLN 95 (103)
Q Consensus 78 ~ti~aYGqtgSGKT~Tm~ 95 (103)
..|.-.|.||+|||.|+-
T Consensus 192 ~vi~lvGpnG~GKTTtla 209 (420)
T PRK14721 192 GVYALIGPTGVGKTTTTA 209 (420)
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 456667999999999883
No 243
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=68.80 E-value=1.8 Score=33.92 Aligned_cols=17 Identities=35% Similarity=0.253 Sum_probs=13.9
Q ss_pred EEEeecCCCCCCceEec
Q psy12526 79 CIFAYGQTGEKTNYLLN 95 (103)
Q Consensus 79 ti~aYGqtgSGKT~Tm~ 95 (103)
.|.-.|++|+|||+|+.
T Consensus 208 ii~lvGptGvGKTTt~a 224 (407)
T PRK12726 208 IISLIGQTGVGKTTTLV 224 (407)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 45677999999998864
No 244
>PRK09401 reverse gyrase; Reviewed
Probab=68.77 E-value=4.5 Score=35.73 Aligned_cols=23 Identities=17% Similarity=0.124 Sum_probs=17.6
Q ss_pred HHHHhhCCCcEEEEeecCCCCCCce
Q psy12526 68 ILDNAFQGYNACIFAYGQTGEKTNY 92 (103)
Q Consensus 68 lv~~~~~G~n~ti~aYGqtgSGKT~ 92 (103)
.+..+++|.|..+ ..+||||||.
T Consensus 88 ~i~~il~g~dv~i--~ApTGsGKT~ 110 (1176)
T PRK09401 88 WAKRLLLGESFAI--IAPTGVGKTT 110 (1176)
T ss_pred HHHHHHCCCcEEE--EcCCCCCHHH
Confidence 4456788987655 5699999995
No 245
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=68.75 E-value=3.2 Score=34.17 Aligned_cols=16 Identities=19% Similarity=0.235 Sum_probs=13.9
Q ss_pred EEeecCCCCCCceEec
Q psy12526 80 IFAYGQTGEKTNYLLN 95 (103)
Q Consensus 80 i~aYGqtgSGKT~Tm~ 95 (103)
++-.|..|+|||+|+.
T Consensus 176 ~lI~GpPGTGKT~t~~ 191 (637)
T TIGR00376 176 FLIHGPPGTGKTRTLV 191 (637)
T ss_pred EEEEcCCCCCHHHHHH
Confidence 4589999999999875
No 246
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=68.75 E-value=2.7 Score=34.73 Aligned_cols=16 Identities=13% Similarity=0.252 Sum_probs=13.5
Q ss_pred EEEeecCCCCCCceEe
Q psy12526 79 CIFAYGQTGEKTNYLL 94 (103)
Q Consensus 79 ti~aYGqtgSGKT~Tm 94 (103)
.++-||++|+|||.++
T Consensus 112 illL~GP~GsGKTTl~ 127 (637)
T TIGR00602 112 ILLITGPSGCGKSTTI 127 (637)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3677999999999865
No 247
>KOG0354|consensus
Probab=68.46 E-value=4.8 Score=33.98 Aligned_cols=24 Identities=25% Similarity=0.465 Sum_probs=18.9
Q ss_pred HHHHHhhCCCcEEEEeecCCCCCCceE
Q psy12526 67 DILDNAFQGYNACIFAYGQTGEKTNYL 93 (103)
Q Consensus 67 ~lv~~~~~G~n~ti~aYGqtgSGKT~T 93 (103)
.++..+| |.|+-| .-+||+|||+-
T Consensus 69 eivq~AL-gkNtii--~lPTG~GKTfI 92 (746)
T KOG0354|consen 69 ELVQPAL-GKNTII--ALPTGSGKTFI 92 (746)
T ss_pred HHhHHhh-cCCeEE--EeecCCCccch
Confidence 5678888 999654 55999999973
No 248
>PF11406 Tachystatin_A: Antimicrobial peptide tachystatin A; InterPro: IPR022717 Tachystatin A contains a cysteine-stabilised triple-stranded beta-sheet and shows features common to membrane-interactive peptides. Tachystatin A is thought to have an antimicrobial activity similar to defensins.Tachystatin A is also a chitin-binding peptide []. ; PDB: 1CIX_A.
Probab=68.25 E-value=1.1 Score=23.56 Aligned_cols=16 Identities=31% Similarity=0.679 Sum_probs=8.3
Q ss_pred HhhCCCcEEEEeecCC
Q psy12526 71 NAFQGYNACIFAYGQT 86 (103)
Q Consensus 71 ~~~~G~n~ti~aYGqt 86 (103)
.-++||||.|.+||..
T Consensus 4 cqlqgfncvvrsyglp 19 (44)
T PF11406_consen 4 CQLQGFNCVVRSYGLP 19 (44)
T ss_dssp ---TTEEE-S--TTS-
T ss_pred ceecccceEEEccCCC
Confidence 3478999999999864
No 249
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=67.88 E-value=5 Score=31.20 Aligned_cols=18 Identities=17% Similarity=0.276 Sum_probs=15.1
Q ss_pred EEEEeecCCCCCCceEec
Q psy12526 78 ACIFAYGQTGEKTNYLLN 95 (103)
Q Consensus 78 ~ti~aYGqtgSGKT~Tm~ 95 (103)
.-++..|.||||||.++.
T Consensus 45 ~h~lvig~tgSGKt~~~v 62 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFV 62 (469)
T ss_pred eEEEEEeCCCCCccceee
Confidence 557889999999998764
No 250
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=67.85 E-value=4.7 Score=31.97 Aligned_cols=26 Identities=15% Similarity=0.276 Sum_probs=20.2
Q ss_pred HHHHHhhC-CC--cEEEEeecCCCCCCce
Q psy12526 67 DILDNAFQ-GY--NACIFAYGQTGEKTNY 92 (103)
Q Consensus 67 ~lv~~~~~-G~--n~ti~aYGqtgSGKT~ 92 (103)
+-++.++. |+ ...++-+|.+|+|||.
T Consensus 18 ~~LD~~l~GG~p~Gs~~li~G~pGsGKT~ 46 (509)
T PRK09302 18 EGFDDITHGGLPKGRPTLVSGTAGTGKTL 46 (509)
T ss_pred hhHHHhhcCCCCCCcEEEEEeCCCCCHHH
Confidence 45677776 44 6788899999999975
No 251
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=67.67 E-value=2.4 Score=32.90 Aligned_cols=18 Identities=22% Similarity=0.433 Sum_probs=14.4
Q ss_pred cEEEEeecCCCCCCceEe
Q psy12526 77 NACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 77 n~ti~aYGqtgSGKT~Tm 94 (103)
.-.|+-||..|+|||+..
T Consensus 179 pkgvLL~GppGTGKT~LA 196 (398)
T PTZ00454 179 PRGVLLYGPPGTGKTMLA 196 (398)
T ss_pred CceEEEECCCCCCHHHHH
Confidence 346788999999999753
No 252
>PF01293 PEPCK_ATP: Phosphoenolpyruvate carboxykinase The Prosite pattern is specific to the ATP binding region; InterPro: IPR001272 Phosphoenolpyruvate carboxykinase (PEPCK) catalyses the first committed (rate-limiting) step in hepatic gluconeogenesis, namely the reversible decarboxylation of oxaloacetate to phosphoenolpyruvate (PEP) and carbon dioxide, using either ATP or GTP as a source of phosphate. The ATP-utilising (4.1.1.49 from EC) and GTP-utilising (4.1.1.32 from EC) enzymes form two divergent subfamilies, which have little sequence similarity but which retain conserved active site residues. ATP-utilising PEPCKs are monomers or oligomers of identical subunits found in certain bacteria, yeast, trypanosomatids, and plants, while GTP-utilising PEPCKs are mainly monomers found in animals and some bacteria []. Both require divalent cations for activity, such as magnesium or manganese. One cation interacts with the enzyme at metal binding site 1 to elicit activation, while the second cation interacts at metal binding site 2 to serve as a metal-nucleotide substrate. In bacteria, fungi and plants, PEPCK is involved in the glyoxylate bypass, an alternative to the tricarboxylic acid cycle. PEPCK helps to regulate blood glucose levels. The rate of gluconeogenesis can be controlled through transcriptional regulation of the PEPCK gene by cAMP (the mediator of glucagon and catecholamines), glucocorticoids and insulin. In general, PEPCK expression is induced by glucagon, catecholamines and glucocorticoids during periods of fasting and in response to stress, but is inhibited by (glucose-induced) insulin upon feeding []. With type II diabetes, this regulation system can fail, resulting in increased gluconeogenesis that in turn raises glucose levels []. PEPCK consists of an N-terminal and a catalytic C-terminal domain, with the active site and metal ions located in a cleft between them. Both domains have an alpha/beta topology that is partly similar to one another [, ]. Substrate binding causes PEPCK to undergo a conformational change, which accelerates catalysis by forcing bulk solvent molecules out of the active site []. PCK uses an alpha/beta/alpha motif for nucleotide binding, this motif differing from other kinase domains. GTP-utilising PEPCK has a PEP-binding domain and two kinase motifs to bind GTP and magnesium. This entry represents ATP-utilising phosphoenolpyruvate carboxykinase enzymes.; GO: 0004612 phosphoenolpyruvate carboxykinase (ATP) activity, 0005524 ATP binding, 0006094 gluconeogenesis; PDB: 2PY7_X 2OLR_A 1AYL_A 1K3D_A 1OEN_A 1AQ2_A 1OS1_A 2OLQ_A 1K3C_A 2PXZ_X ....
Probab=67.50 E-value=2.6 Score=33.60 Aligned_cols=21 Identities=19% Similarity=0.333 Sum_probs=16.7
Q ss_pred EEEeecCCCCCCce-------EeccCCC
Q psy12526 79 CIFAYGQTGEKTNY-------LLNGNGP 99 (103)
Q Consensus 79 ti~aYGqtgSGKT~-------Tm~G~~~ 99 (103)
+.+.+|.+|||||. .|+|+++
T Consensus 212 ~alfFGLSGTGKTTLs~d~~r~ligDDe 239 (466)
T PF01293_consen 212 TALFFGLSGTGKTTLSADPERELIGDDE 239 (466)
T ss_dssp EEEEEESTTSSHHHHHSBTTSEEEESSE
T ss_pred eEEEEecCCCCccccccCCcceEEeCce
Confidence 46789999999995 6777664
No 253
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=67.49 E-value=1.7 Score=34.26 Aligned_cols=16 Identities=25% Similarity=0.501 Sum_probs=13.0
Q ss_pred EEEeecCCCCCCceEe
Q psy12526 79 CIFAYGQTGEKTNYLL 94 (103)
Q Consensus 79 ti~aYGqtgSGKT~Tm 94 (103)
.|+-||.+|+|||...
T Consensus 219 gVLL~GPPGTGKT~LA 234 (438)
T PTZ00361 219 GVILYGPPGTGKTLLA 234 (438)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4667999999998754
No 254
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=67.41 E-value=4.5 Score=32.97 Aligned_cols=19 Identities=11% Similarity=0.345 Sum_probs=17.3
Q ss_pred hhCCCcEEEEeecCCCCCC
Q psy12526 72 AFQGYNACIFAYGQTGEKT 90 (103)
Q Consensus 72 ~~~G~n~ti~aYGqtgSGK 90 (103)
-....+++|+-.|+||+||
T Consensus 263 r~A~tdstVLi~GESGTGK 281 (560)
T COG3829 263 RIAKTDSTVLILGESGTGK 281 (560)
T ss_pred hhcCCCCcEEEecCCCccH
Confidence 3678899999999999999
No 255
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=67.12 E-value=5.1 Score=34.08 Aligned_cols=26 Identities=8% Similarity=0.032 Sum_probs=17.2
Q ss_pred HHHHHHhhCCCcEEEEeecCCCCCCceE
Q psy12526 66 RDILDNAFQGYNACIFAYGQTGEKTNYL 93 (103)
Q Consensus 66 ~~lv~~~~~G~n~ti~aYGqtgSGKT~T 93 (103)
..+++.+.+ |..++..|+||||||..
T Consensus 8 ~~i~~~l~~--~~~vIi~a~TGSGKTT~ 33 (819)
T TIGR01970 8 PALRDALAA--HPQVVLEAPPGAGKSTA 33 (819)
T ss_pred HHHHHHHHc--CCcEEEECCCCCCHHHH
Confidence 344444433 33566899999999863
No 256
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=67.08 E-value=3.1 Score=33.52 Aligned_cols=26 Identities=19% Similarity=0.469 Sum_probs=18.0
Q ss_pred HHhhCCCcEE------EEeecCCCCCCceEec
Q psy12526 70 DNAFQGYNAC------IFAYGQTGEKTNYLLN 95 (103)
Q Consensus 70 ~~~~~G~n~t------i~aYGqtgSGKT~Tm~ 95 (103)
..++++.+.. |+-.|.+|||||+.|-
T Consensus 19 ~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr 50 (504)
T TIGR03238 19 ERILVKFNKELPSSSLLFLCGSSGDGKSEILA 50 (504)
T ss_pred HHHHhCCceeecCCCEEEEECCCCCCHHHHHh
Confidence 3455554433 4668999999998765
No 257
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=67.05 E-value=3.2 Score=30.04 Aligned_cols=14 Identities=14% Similarity=0.304 Sum_probs=11.9
Q ss_pred EEEeecCCCCCCce
Q psy12526 79 CIFAYGQTGEKTNY 92 (103)
Q Consensus 79 ti~aYGqtgSGKT~ 92 (103)
.+...|.+|||||.
T Consensus 32 ~~~i~G~nGsGKST 45 (235)
T COG1122 32 RVLLIGPNGSGKST 45 (235)
T ss_pred EEEEECCCCCCHHH
Confidence 45679999999986
No 258
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=66.83 E-value=7.3 Score=29.28 Aligned_cols=26 Identities=15% Similarity=0.178 Sum_probs=19.7
Q ss_pred HHHHHhhCC-C--cEEEEeecCCCCCCce
Q psy12526 67 DILDNAFQG-Y--NACIFAYGQTGEKTNY 92 (103)
Q Consensus 67 ~lv~~~~~G-~--n~ti~aYGqtgSGKT~ 92 (103)
+-++.+|.| + ...+.-||+.|||||.
T Consensus 83 ~~LD~lLgGGi~~G~iteI~G~~GsGKTq 111 (313)
T TIGR02238 83 QALDGILGGGIESMSITEVFGEFRCGKTQ 111 (313)
T ss_pred HHHHHHhCCCCcCCeEEEEECCCCCCcCH
Confidence 557777775 3 3556789999999986
No 259
>KOG0924|consensus
Probab=66.65 E-value=3.6 Score=34.91 Aligned_cols=20 Identities=25% Similarity=0.315 Sum_probs=16.2
Q ss_pred CCcEEEEeecCCCCCCceEe
Q psy12526 75 GYNACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 75 G~n~ti~aYGqtgSGKT~Tm 94 (103)
+-|-+|..-|+||||||.-+
T Consensus 369 r~n~vvvivgETGSGKTTQl 388 (1042)
T KOG0924|consen 369 RENQVVVIVGETGSGKTTQL 388 (1042)
T ss_pred hhCcEEEEEecCCCCchhhh
Confidence 34677889999999999754
No 260
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=66.64 E-value=2.3 Score=31.25 Aligned_cols=17 Identities=18% Similarity=0.231 Sum_probs=13.0
Q ss_pred EEEEeecCCCCCCceEe
Q psy12526 78 ACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 78 ~ti~aYGqtgSGKT~Tm 94 (103)
-+|.-.|.+|+|||.|.
T Consensus 73 ~vi~l~G~~G~GKTTt~ 89 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTI 89 (272)
T ss_pred eEEEEECCCCCcHHHHH
Confidence 34545599999999875
No 261
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=66.61 E-value=8.1 Score=32.65 Aligned_cols=37 Identities=22% Similarity=0.292 Sum_probs=23.4
Q ss_pred CHHHHHHHHHHHHHHHhhCCC------cEEEEeecCCCCCCceE
Q psy12526 56 SQEKVFDALGRDILDNAFQGY------NACIFAYGQTGEKTNYL 93 (103)
Q Consensus 56 ~q~~v~~~~~~~lv~~~~~G~------n~ti~aYGqtgSGKT~T 93 (103)
.|.+.-+.+.. .|.....|. .+.++-+|++|+|||+.
T Consensus 462 GQ~~ai~~l~~-~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~l 504 (758)
T PRK11034 462 GQDKAIEALTE-AIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEV 504 (758)
T ss_pred CcHHHHHHHHH-HHHHHhccccCCCCCcceEEEECCCCCCHHHH
Confidence 45555544443 334444444 35788999999999974
No 262
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=66.58 E-value=3.4 Score=28.82 Aligned_cols=16 Identities=19% Similarity=0.368 Sum_probs=13.1
Q ss_pred EEEeecCCCCCCceEe
Q psy12526 79 CIFAYGQTGEKTNYLL 94 (103)
Q Consensus 79 ti~aYGqtgSGKT~Tm 94 (103)
++.-+|++|+|||..+
T Consensus 24 ~~~i~G~NGsGKTTLl 39 (204)
T cd03240 24 LTLIVGQNGAGKTTII 39 (204)
T ss_pred eEEEECCCCCCHHHHH
Confidence 5667999999999754
No 263
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=66.36 E-value=5.5 Score=31.56 Aligned_cols=26 Identities=15% Similarity=0.321 Sum_probs=20.2
Q ss_pred HHHHHhhC-CC--cEEEEeecCCCCCCce
Q psy12526 67 DILDNAFQ-GY--NACIFAYGQTGEKTNY 92 (103)
Q Consensus 67 ~lv~~~~~-G~--n~ti~aYGqtgSGKT~ 92 (103)
+-++.++. |+ +.+++-.|.+|+|||.
T Consensus 8 ~gLD~il~GGlp~g~~~Li~G~pGsGKT~ 36 (484)
T TIGR02655 8 EGFDDISHGGLPIGRSTLVSGTSGTGKTL 36 (484)
T ss_pred hhHHHhcCCCCCCCeEEEEEcCCCCCHHH
Confidence 44677776 43 6788999999999974
No 264
>KOG0987|consensus
Probab=66.13 E-value=7.2 Score=31.51 Aligned_cols=35 Identities=29% Similarity=0.510 Sum_probs=24.7
Q ss_pred CCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceE
Q psy12526 54 FASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYL 93 (103)
Q Consensus 54 ~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~T 93 (103)
...|+.||+ .. +..+.+..-..+| ||.-|+||||-
T Consensus 119 ~~eqk~v~d-~~---~~~v~~~~g~~ff-~g~~gtgKt~l 153 (540)
T KOG0987|consen 119 TPEQKRVYD-AI---LEAVENNLGGVFF-YGFGGTGKTYL 153 (540)
T ss_pred CHHHHHHHH-HH---HHHHhccccceee-eccCCccceee
Confidence 458888998 33 2344444555667 99999999984
No 265
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=65.41 E-value=8 Score=32.26 Aligned_cols=37 Identities=22% Similarity=0.311 Sum_probs=22.9
Q ss_pred CHHHHHHHHHHHHHHHhhCCC------cEEEEeecCCCCCCceE
Q psy12526 56 SQEKVFDALGRDILDNAFQGY------NACIFAYGQTGEKTNYL 93 (103)
Q Consensus 56 ~q~~v~~~~~~~lv~~~~~G~------n~ti~aYGqtgSGKT~T 93 (103)
.|++.-+.+... +.....|. .+.++-+|++|+|||+.
T Consensus 458 GQ~~ai~~l~~~-i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~l 500 (731)
T TIGR02639 458 GQDEAIDSLVSS-IKRSRAGLGNPNKPVGSFLFTGPTGVGKTEL 500 (731)
T ss_pred CcHHHHHHHHHH-HHHHhcCCCCCCCCceeEEEECCCCccHHHH
Confidence 455555554433 33334444 34678899999999964
No 266
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=65.34 E-value=2.3 Score=29.63 Aligned_cols=16 Identities=25% Similarity=0.428 Sum_probs=12.1
Q ss_pred EEEeecCCCCCCceEe
Q psy12526 79 CIFAYGQTGEKTNYLL 94 (103)
Q Consensus 79 ti~aYGqtgSGKT~Tm 94 (103)
.+.-.|++|||||..|
T Consensus 30 ~~~i~G~NGsGKSTll 45 (213)
T cd03279 30 LFLICGPTGAGKSTIL 45 (213)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3445899999998744
No 267
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=65.33 E-value=6.7 Score=29.77 Aligned_cols=28 Identities=29% Similarity=0.287 Sum_probs=20.9
Q ss_pred HHHHHHhhC--CC--cEEEEeecCCCCCCceE
Q psy12526 66 RDILDNAFQ--GY--NACIFAYGQTGEKTNYL 93 (103)
Q Consensus 66 ~~lv~~~~~--G~--n~ti~aYGqtgSGKT~T 93 (103)
-+-++.+|. |+ ...+.-||+.|||||.-
T Consensus 40 i~~LD~~Lg~GGlp~G~iteI~G~~GsGKTtL 71 (321)
T TIGR02012 40 SLSLDLALGVGGLPRGRIIEIYGPESSGKTTL 71 (321)
T ss_pred CHHHHHHhcCCCCcCCeEEEEECCCCCCHHHH
Confidence 356777775 66 34678999999999863
No 268
>PRK13721 conjugal transfer ATP-binding protein TraC; Provisional
Probab=65.01 E-value=2.1 Score=36.19 Aligned_cols=15 Identities=20% Similarity=0.375 Sum_probs=12.8
Q ss_pred EEeecCCCCCCceEe
Q psy12526 80 IFAYGQTGEKTNYLL 94 (103)
Q Consensus 80 i~aYGqtgSGKT~Tm 94 (103)
.+..|.||||||++|
T Consensus 452 ~~I~G~sGsGKS~l~ 466 (844)
T PRK13721 452 MAVCGTSGAGKTGLI 466 (844)
T ss_pred EEEEcCCCCCHHHHH
Confidence 556899999999876
No 269
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=64.99 E-value=3.1 Score=32.56 Aligned_cols=16 Identities=31% Similarity=0.472 Sum_probs=13.6
Q ss_pred EEEEeecCCCCCCceE
Q psy12526 78 ACIFAYGQTGEKTNYL 93 (103)
Q Consensus 78 ~ti~aYGqtgSGKT~T 93 (103)
..|+-+|++|+|||+.
T Consensus 109 ~~iLl~Gp~GtGKT~l 124 (412)
T PRK05342 109 SNILLIGPTGSGKTLL 124 (412)
T ss_pred ceEEEEcCCCCCHHHH
Confidence 5688899999999863
No 270
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=64.97 E-value=7.2 Score=28.99 Aligned_cols=27 Identities=22% Similarity=0.351 Sum_probs=19.0
Q ss_pred HHHHHhhCC-C--cEEEEeecCCCCCCceE
Q psy12526 67 DILDNAFQG-Y--NACIFAYGQTGEKTNYL 93 (103)
Q Consensus 67 ~lv~~~~~G-~--n~ti~aYGqtgSGKT~T 93 (103)
+-++.++.| + ...+.-+|..|+|||..
T Consensus 89 ~~lD~~l~GGi~~g~vtei~G~~GsGKT~l 118 (317)
T PRK04301 89 KELDELLGGGIETQSITEFYGEFGSGKTQI 118 (317)
T ss_pred HHHHHHhcCCccCCcEEEEECCCCCCHhHH
Confidence 445556654 2 55677899999999863
No 271
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=64.93 E-value=6.4 Score=27.43 Aligned_cols=24 Identities=25% Similarity=0.490 Sum_probs=17.3
Q ss_pred HHHhhC-CC--cEEEEeecCCCCCCce
Q psy12526 69 LDNAFQ-GY--NACIFAYGQTGEKTNY 92 (103)
Q Consensus 69 v~~~~~-G~--n~ti~aYGqtgSGKT~ 92 (103)
++.++. |+ ...++-+|.+|+|||.
T Consensus 5 LD~~l~gGi~~g~~~li~G~~G~GKt~ 31 (224)
T TIGR03880 5 LDEMLGGGFPEGHVIVVIGEYGTGKTT 31 (224)
T ss_pred hHHHhcCCCCCCeEEEEECCCCCCHHH
Confidence 456664 43 5566779999999976
No 272
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=64.87 E-value=6.6 Score=32.56 Aligned_cols=32 Identities=13% Similarity=-0.049 Sum_probs=21.3
Q ss_pred CHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceE
Q psy12526 56 SQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYL 93 (103)
Q Consensus 56 ~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~T 93 (103)
.|.++++.+..-+ -++ ..+++-..||+|||+.
T Consensus 1 ~Q~~~~~~i~~al----~~~--~~lliEA~TGtGKTlA 32 (636)
T TIGR03117 1 EQALFYLNCLTSL----RQK--RIGMLEASTGVGKTLA 32 (636)
T ss_pred CHHHHHHHHHHHH----hcC--CeEEEEcCCCCcHHHH
Confidence 3777776654332 333 4577899999999963
No 273
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=64.68 E-value=10 Score=32.36 Aligned_cols=37 Identities=16% Similarity=0.324 Sum_probs=22.9
Q ss_pred CHHHHHHHHHHHHHHHhhCCCc------EEEEeecCCCCCCceE
Q psy12526 56 SQEKVFDALGRDILDNAFQGYN------ACIFAYGQTGEKTNYL 93 (103)
Q Consensus 56 ~q~~v~~~~~~~lv~~~~~G~n------~ti~aYGqtgSGKT~T 93 (103)
.|.+.-+.++.- +..+..|.+ ++++-.|++|+|||+.
T Consensus 570 GQ~~Av~~v~~~-i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~l 612 (852)
T TIGR03345 570 GQDHALEAIAER-IRTARAGLEDPRKPLGVFLLVGPSGVGKTET 612 (852)
T ss_pred ChHHHHHHHHHH-HHHHhcCCCCCCCCceEEEEECCCCCCHHHH
Confidence 454444444433 333444543 5688889999999974
No 274
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=64.56 E-value=2.7 Score=30.52 Aligned_cols=38 Identities=18% Similarity=0.209 Sum_probs=23.2
Q ss_pred CCCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceE
Q psy12526 53 NFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYL 93 (103)
Q Consensus 53 ~~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~T 93 (103)
+.++|....+... .+-+. .-....|+..|.+|+||+.+
T Consensus 10 ~~~~~~~~~~~~~-~~~~~--~~~~~~IllvG~tGvGKSSl 47 (249)
T cd01853 10 PDAAQTKALELEA-KGKEE--LDFSLTILVLGKTGVGKSST 47 (249)
T ss_pred cHHHHHHHHHHHH-Hhhhh--ccCCeEEEEECCCCCcHHHH
Confidence 3455655544433 32222 23456788899999999875
No 275
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=64.34 E-value=6.4 Score=29.93 Aligned_cols=36 Identities=14% Similarity=0.202 Sum_probs=21.7
Q ss_pred CCHHHHHHHHHHHHHHHhhCC-CcEEEEeecCCCCCCceEe
Q psy12526 55 ASQEKVFDALGRDILDNAFQG-YNACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 55 ~~q~~v~~~~~~~lv~~~~~G-~n~ti~aYGqtgSGKT~Tm 94 (103)
..|+.+-..+ ...+..| ..-.++-||+.|+|||.++
T Consensus 19 iGq~~~~~~l----~~~~~~~~~~h~~L~~Gp~G~GKTtla 55 (363)
T PRK14961 19 IGQKHIVTAI----SNGLSLGRIHHAWLLSGTRGVGKTTIA 55 (363)
T ss_pred cChHHHHHHH----HHHHHcCCCCeEEEEecCCCCCHHHHH
Confidence 3565544432 2333333 3446788999999999754
No 276
>KOG0780|consensus
Probab=64.32 E-value=7.4 Score=30.87 Aligned_cols=38 Identities=29% Similarity=0.378 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHH------hhCCCcEEEEeecCCCCCCceEec
Q psy12526 57 QEKVFDALGRDILDN------AFQGYNACIFAYGQTGEKTNYLLN 95 (103)
Q Consensus 57 q~~v~~~~~~~lv~~------~~~G~n~ti~aYGqtgSGKT~Tm~ 95 (103)
|..||++++ .|++. .-.|-...|+--|-.|||||.|+.
T Consensus 76 ~~~vf~eL~-kl~dp~~~~~~~~K~kpsVimfVGLqG~GKTTtc~ 119 (483)
T KOG0780|consen 76 QKAVFDELV-KLLDPGKSALQPKKGKPSVIMFVGLQGSGKTTTCT 119 (483)
T ss_pred HHHHHHHHH-HHhCCCCcccccccCCCcEEEEEeccCCCcceeHH
Confidence 677888776 34443 124566777888999999999863
No 277
>PRK10867 signal recognition particle protein; Provisional
Probab=64.08 E-value=12 Score=29.61 Aligned_cols=18 Identities=17% Similarity=0.191 Sum_probs=14.5
Q ss_pred cEEEEeecCCCCCCceEe
Q psy12526 77 NACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 77 n~ti~aYGqtgSGKT~Tm 94 (103)
...|+..|.+|||||.|.
T Consensus 100 p~vI~~vG~~GsGKTTta 117 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTA 117 (433)
T ss_pred CEEEEEECCCCCcHHHHH
Confidence 356777799999999875
No 278
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=63.99 E-value=3.6 Score=28.50 Aligned_cols=13 Identities=15% Similarity=0.197 Sum_probs=10.7
Q ss_pred EEeecCCCCCCce
Q psy12526 80 IFAYGQTGEKTNY 92 (103)
Q Consensus 80 i~aYGqtgSGKT~ 92 (103)
..-+|++|||||-
T Consensus 27 ~~i~G~NGsGKS~ 39 (220)
T PF02463_consen 27 NVIVGPNGSGKSN 39 (220)
T ss_dssp EEEEESTTSSHHH
T ss_pred EEEEcCCCCCHHH
Confidence 3468999999985
No 279
>PF13166 AAA_13: AAA domain
Probab=63.83 E-value=3.2 Score=33.99 Aligned_cols=12 Identities=25% Similarity=0.623 Sum_probs=10.5
Q ss_pred EeecCCCCCCce
Q psy12526 81 FAYGQTGEKTNY 92 (103)
Q Consensus 81 ~aYGqtgSGKT~ 92 (103)
+-||.+|||||.
T Consensus 20 ~IYG~NGsGKSt 31 (712)
T PF13166_consen 20 LIYGRNGSGKST 31 (712)
T ss_pred EEECCCCCCHHH
Confidence 579999999974
No 280
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=63.80 E-value=2.6 Score=29.70 Aligned_cols=13 Identities=15% Similarity=0.434 Sum_probs=11.0
Q ss_pred eecCCCCCCceEe
Q psy12526 82 AYGQTGEKTNYLL 94 (103)
Q Consensus 82 aYGqtgSGKT~Tm 94 (103)
-.|++|||||..|
T Consensus 28 i~GpNGsGKStll 40 (243)
T cd03272 28 VVGRNGSGKSNFF 40 (243)
T ss_pred EECCCCCCHHHHH
Confidence 5799999999764
No 281
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=63.78 E-value=6.3 Score=33.20 Aligned_cols=32 Identities=19% Similarity=0.266 Sum_probs=20.3
Q ss_pred CCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCce
Q psy12526 55 ASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNY 92 (103)
Q Consensus 55 ~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~ 92 (103)
..|...++.+. .++ .|++ +.+-+|-||||||-
T Consensus 201 ~~Q~~a~~~i~----~~~-~~~~-~~Ll~GvTGSGKTE 232 (730)
T COG1198 201 QEQQAAVEAIL----SSL-GGFA-PFLLDGVTGSGKTE 232 (730)
T ss_pred HHHHHHHHHHH----Hhc-cccc-ceeEeCCCCCcHHH
Confidence 45555555443 333 4555 55679999999984
No 282
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=63.59 E-value=7 Score=26.28 Aligned_cols=26 Identities=19% Similarity=0.217 Sum_probs=20.1
Q ss_pred HHHHhhC-CCcEEEEeecCCCCCCceE
Q psy12526 68 ILDNAFQ-GYNACIFAYGQTGEKTNYL 93 (103)
Q Consensus 68 lv~~~~~-G~n~ti~aYGqtgSGKT~T 93 (103)
++..+.. .-...|+-.|..|||||.-
T Consensus 4 ~~~~~~~~~~~~~ililGl~~sGKTtl 30 (175)
T PF00025_consen 4 VLSKLKSKKKEIKILILGLDGSGKTTL 30 (175)
T ss_dssp HHHHCTTTTSEEEEEEEESTTSSHHHH
T ss_pred HHHHhcccCcEEEEEEECCCccchHHH
Confidence 4555554 6678899999999999863
No 283
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=63.46 E-value=3.8 Score=36.61 Aligned_cols=30 Identities=23% Similarity=0.368 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHhhCCCcEEEEeecCCCCCCce
Q psy12526 60 VFDALGRDILDNAFQGYNACIFAYGQTGEKTNY 92 (103)
Q Consensus 60 v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~ 92 (103)
||..- ..++.. +++. -.++..|+||||||.
T Consensus 75 i~~~r-~~Il~a-i~~~-~VviI~GeTGSGKTT 104 (1294)
T PRK11131 75 VSQKK-QDILEA-IRDH-QVVIVAGETGSGKTT 104 (1294)
T ss_pred HHHHH-HHHHHH-HHhC-CeEEEECCCCCCHHH
Confidence 44432 234433 4443 356788999999997
No 284
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=63.14 E-value=1.7 Score=33.23 Aligned_cols=12 Identities=33% Similarity=0.487 Sum_probs=10.7
Q ss_pred ecCCCCCCceEe
Q psy12526 83 YGQTGEKTNYLL 94 (103)
Q Consensus 83 YGqtgSGKT~Tm 94 (103)
.|++|+|||.+|
T Consensus 35 lGPSGcGKSTlL 46 (338)
T COG3839 35 LGPSGCGKSTLL 46 (338)
T ss_pred ECCCCCCHHHHH
Confidence 699999999875
No 285
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=63.08 E-value=13 Score=28.71 Aligned_cols=36 Identities=17% Similarity=0.289 Sum_probs=22.3
Q ss_pred CHHHHHHHHHHHHHHHhhCC---CcEEEEeecCCCCCCce
Q psy12526 56 SQEKVFDALGRDILDNAFQG---YNACIFAYGQTGEKTNY 92 (103)
Q Consensus 56 ~q~~v~~~~~~~lv~~~~~G---~n~ti~aYGqtgSGKT~ 92 (103)
.+++.-+.++.- +..+..| -+--+.-.|+.|+|||.
T Consensus 55 G~~~~i~~lv~~-l~~~a~g~~~~r~il~L~GPPGsGKSt 93 (361)
T smart00763 55 GMEEAIERFVNY-FKSAAQGLEERKQILYLLGPVGGGKSS 93 (361)
T ss_pred CcHHHHHHHHHH-HHHHHhcCCCCCcEEEEECCCCCCHHH
Confidence 345556666643 3343343 34556778999999985
No 286
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=62.95 E-value=4.7 Score=29.47 Aligned_cols=12 Identities=25% Similarity=0.423 Sum_probs=10.0
Q ss_pred eecCCCCCCceE
Q psy12526 82 AYGQTGEKTNYL 93 (103)
Q Consensus 82 aYGqtgSGKT~T 93 (103)
-.|++|||||.-
T Consensus 33 iiGpSGSGKSTl 44 (240)
T COG1126 33 IIGPSGSGKSTL 44 (240)
T ss_pred EECCCCCCHHHH
Confidence 479999999863
No 287
>PRK13873 conjugal transfer ATPase TrbE; Provisional
Probab=62.66 E-value=2.5 Score=35.59 Aligned_cols=15 Identities=33% Similarity=0.505 Sum_probs=12.6
Q ss_pred EEeecCCCCCCceEe
Q psy12526 80 IFAYGQTGEKTNYLL 94 (103)
Q Consensus 80 i~aYGqtgSGKT~Tm 94 (103)
.+..|.||||||+.|
T Consensus 444 ~~I~G~tGsGKS~l~ 458 (811)
T PRK13873 444 TLVVGPTGAGKSVLL 458 (811)
T ss_pred EEEECCCCCCHHHHH
Confidence 456999999999876
No 288
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=62.59 E-value=8.4 Score=28.54 Aligned_cols=36 Identities=17% Similarity=0.241 Sum_probs=22.4
Q ss_pred CCHHHHHHHHHHHHHHHhhCCC-cEEEEeecCCCCCCceEe
Q psy12526 55 ASQEKVFDALGRDILDNAFQGY-NACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 55 ~~q~~v~~~~~~~lv~~~~~G~-n~ti~aYGqtgSGKT~Tm 94 (103)
..|+.+.+.+. ..+-.|. .-.++-||+.|+|||.+.
T Consensus 17 ig~~~~~~~l~----~~~~~~~~~~~~Ll~G~~G~GKt~~a 53 (355)
T TIGR02397 17 IGQEHIVQTLK----NAIKNGRIAHAYLFSGPRGTGKTSIA 53 (355)
T ss_pred cCcHHHHHHHH----HHHHcCCCCeEEEEECCCCCCHHHHH
Confidence 35555554433 3333443 446788999999998654
No 289
>KOG2655|consensus
Probab=62.56 E-value=6.4 Score=30.55 Aligned_cols=21 Identities=14% Similarity=0.389 Sum_probs=19.0
Q ss_pred hhCCCcEEEEeecCCCCCCce
Q psy12526 72 AFQGYNACIFAYGQTGEKTNY 92 (103)
Q Consensus 72 ~~~G~n~ti~aYGqtgSGKT~ 92 (103)
+-.|+.-+++.-|++|+|||.
T Consensus 16 ~KkG~~ftlmvvG~sGlGKsT 36 (366)
T KOG2655|consen 16 VKKGFDFTLMVVGESGLGKST 36 (366)
T ss_pred HhcCCceEEEEecCCCccHHH
Confidence 468999999999999999975
No 290
>PRK13880 conjugal transfer coupling protein TraG; Provisional
Probab=62.29 E-value=5.7 Score=32.78 Aligned_cols=18 Identities=17% Similarity=0.185 Sum_probs=15.2
Q ss_pred EEEEeecCCCCCCceEec
Q psy12526 78 ACIFAYGQTGEKTNYLLN 95 (103)
Q Consensus 78 ~ti~aYGqtgSGKT~Tm~ 95 (103)
.-++.+|.||||||..+.
T Consensus 176 ~HvlviapTgSGKgvg~V 193 (636)
T PRK13880 176 EHVLTYAPTRSGKGVGLV 193 (636)
T ss_pred ceEEEEecCCCCCceEEE
Confidence 447899999999999765
No 291
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=62.28 E-value=3.1 Score=30.20 Aligned_cols=13 Identities=23% Similarity=0.381 Sum_probs=10.6
Q ss_pred eecCCCCCCceEe
Q psy12526 82 AYGQTGEKTNYLL 94 (103)
Q Consensus 82 aYGqtgSGKT~Tm 94 (103)
-+|++|||||.-|
T Consensus 26 i~G~NGsGKS~ll 38 (270)
T cd03242 26 LVGENAQGKTNLL 38 (270)
T ss_pred EECCCCCCHHHHH
Confidence 5899999998643
No 292
>KOG0745|consensus
Probab=61.97 E-value=4.1 Score=32.79 Aligned_cols=18 Identities=22% Similarity=0.438 Sum_probs=13.4
Q ss_pred hCCCcEEEEeecCCCCCCce
Q psy12526 73 FQGYNACIFAYGQTGEKTNY 92 (103)
Q Consensus 73 ~~G~n~ti~aYGqtgSGKT~ 92 (103)
|+--| |+-.|+||||||.
T Consensus 224 LeKSN--vLllGPtGsGKTl 241 (564)
T KOG0745|consen 224 LEKSN--VLLLGPTGSGKTL 241 (564)
T ss_pred eeccc--EEEECCCCCchhH
Confidence 34444 5679999999986
No 293
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=61.62 E-value=8.3 Score=29.04 Aligned_cols=28 Identities=11% Similarity=0.129 Sum_probs=18.6
Q ss_pred HHHHHhhCCC-cEEEEeecCCCCCCceEe
Q psy12526 67 DILDNAFQGY-NACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 67 ~lv~~~~~G~-n~ti~aYGqtgSGKT~Tm 94 (103)
.+...+-+|. .-.++-||+.|+|||+..
T Consensus 28 ~l~~~i~~~~~~~~~L~~G~~G~GKt~~a 56 (367)
T PRK14970 28 TLLNAIENNHLAQALLFCGPRGVGKTTCA 56 (367)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHH
Confidence 3334444553 446778999999999754
No 294
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=61.43 E-value=4.3 Score=33.74 Aligned_cols=17 Identities=24% Similarity=0.483 Sum_probs=13.9
Q ss_pred EEEEeecCCCCCCceEe
Q psy12526 78 ACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 78 ~ti~aYGqtgSGKT~Tm 94 (103)
-.|+-||..|+|||+.+
T Consensus 213 ~giLL~GppGtGKT~la 229 (733)
T TIGR01243 213 KGVLLYGPPGTGKTLLA 229 (733)
T ss_pred ceEEEECCCCCChHHHH
Confidence 35788999999999753
No 295
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=61.36 E-value=4.3 Score=28.90 Aligned_cols=17 Identities=18% Similarity=0.264 Sum_probs=14.2
Q ss_pred cEEEEeecCCCCCCceE
Q psy12526 77 NACIFAYGQTGEKTNYL 93 (103)
Q Consensus 77 n~ti~aYGqtgSGKT~T 93 (103)
+..++-+|++|+|||..
T Consensus 24 g~~~~i~G~~G~GKTtl 40 (230)
T PRK08533 24 GSLILIEGDESTGKSIL 40 (230)
T ss_pred CcEEEEECCCCCCHHHH
Confidence 34778899999999976
No 296
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=61.35 E-value=9.2 Score=29.10 Aligned_cols=27 Identities=30% Similarity=0.347 Sum_probs=20.6
Q ss_pred HHHHHHhhC--CC--cEEEEeecCCCCCCce
Q psy12526 66 RDILDNAFQ--GY--NACIFAYGQTGEKTNY 92 (103)
Q Consensus 66 ~~lv~~~~~--G~--n~ti~aYGqtgSGKT~ 92 (103)
-+-++.+|. |+ ...+.-||+.|||||.
T Consensus 40 i~~LD~~Lg~GGlp~G~iteI~Gp~GsGKTt 70 (325)
T cd00983 40 SLSLDIALGIGGYPKGRIIEIYGPESSGKTT 70 (325)
T ss_pred CHHHHHHhcCCCccCCeEEEEECCCCCCHHH
Confidence 466777776 54 4467799999999985
No 297
>KOG1803|consensus
Probab=61.16 E-value=3.6 Score=33.99 Aligned_cols=15 Identities=20% Similarity=0.206 Sum_probs=12.7
Q ss_pred EeecCCCCCCceEec
Q psy12526 81 FAYGQTGEKTNYLLN 95 (103)
Q Consensus 81 ~aYGqtgSGKT~Tm~ 95 (103)
.--|+.|+|||||+.
T Consensus 205 ~I~GPPGTGKT~Tlv 219 (649)
T KOG1803|consen 205 IIHGPPGTGKTRTLV 219 (649)
T ss_pred EeeCCCCCCceeeHH
Confidence 457999999999973
No 298
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=61.15 E-value=6.9 Score=30.92 Aligned_cols=18 Identities=17% Similarity=0.172 Sum_probs=14.7
Q ss_pred cEEEEeecCCCCCCceEe
Q psy12526 77 NACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 77 n~ti~aYGqtgSGKT~Tm 94 (103)
...|+-.|.+|+|||.|.
T Consensus 100 ~~vi~lvG~~GvGKTTta 117 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTC 117 (429)
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 356777899999999875
No 299
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=61.13 E-value=7.4 Score=28.75 Aligned_cols=37 Identities=16% Similarity=0.051 Sum_probs=23.7
Q ss_pred CCCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEec
Q psy12526 53 NFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLN 95 (103)
Q Consensus 53 ~~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~ 95 (103)
+...|.++-+.+ .+.+.+|-+ ++.=.+||+|||.+.+
T Consensus 9 ~r~~Q~~~m~~v----~~~~~~~~~--~~~eapTGtGKTl~~L 45 (289)
T smart00489 9 PYPIQYEFMEEL----KRVLDRGKI--GILESPTGTGKTLSLL 45 (289)
T ss_pred CCHHHHHHHHHH----HHHHHcCCc--EEEECCCCcchhHHHH
Confidence 345776555444 345556655 4456799999997654
No 300
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=61.13 E-value=7.4 Score=28.75 Aligned_cols=37 Identities=16% Similarity=0.051 Sum_probs=23.7
Q ss_pred CCCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEec
Q psy12526 53 NFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLN 95 (103)
Q Consensus 53 ~~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~ 95 (103)
+...|.++-+.+ .+.+.+|-+ ++.=.+||+|||.+.+
T Consensus 9 ~r~~Q~~~m~~v----~~~~~~~~~--~~~eapTGtGKTl~~L 45 (289)
T smart00488 9 PYPIQYEFMEEL----KRVLDRGKI--GILESPTGTGKTLSLL 45 (289)
T ss_pred CCHHHHHHHHHH----HHHHHcCCc--EEEECCCCcchhHHHH
Confidence 345776555444 345556655 4456799999997654
No 301
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=60.83 E-value=7.7 Score=34.35 Aligned_cols=25 Identities=12% Similarity=0.094 Sum_probs=18.9
Q ss_pred HHHHHhhCCCcEEEEeecCCCCCCceE
Q psy12526 67 DILDNAFQGYNACIFAYGQTGEKTNYL 93 (103)
Q Consensus 67 ~lv~~~~~G~n~ti~aYGqtgSGKT~T 93 (103)
..+..++.|.+.. +-++||||||..
T Consensus 85 ~~i~~il~G~d~v--i~ApTGsGKT~f 109 (1171)
T TIGR01054 85 MWAKRVLRGDSFA--IIAPTGVGKTTF 109 (1171)
T ss_pred HHHHHHhCCCeEE--EECCCCCCHHHH
Confidence 3456678998755 567999999963
No 302
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=60.73 E-value=4.4 Score=29.32 Aligned_cols=13 Identities=23% Similarity=0.322 Sum_probs=10.6
Q ss_pred EeecCCCCCCceE
Q psy12526 81 FAYGQTGEKTNYL 93 (103)
Q Consensus 81 ~aYGqtgSGKT~T 93 (103)
.-.|++|||||.-
T Consensus 35 aI~GpSGSGKSTL 47 (226)
T COG1136 35 AIVGPSGSGKSTL 47 (226)
T ss_pred EEECCCCCCHHHH
Confidence 4479999999863
No 303
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=60.61 E-value=2.9 Score=35.50 Aligned_cols=16 Identities=31% Similarity=0.524 Sum_probs=13.5
Q ss_pred EEEeecCCCCCCceEe
Q psy12526 79 CIFAYGQTGEKTNYLL 94 (103)
Q Consensus 79 ti~aYGqtgSGKT~Tm 94 (103)
-.+..|.||||||+.|
T Consensus 490 h~~I~G~tGsGKS~l~ 505 (852)
T PRK13891 490 HTFMFGPTGAGKSTHL 505 (852)
T ss_pred eEEEECCCCCCHHHHH
Confidence 3578999999999876
No 304
>PRK09354 recA recombinase A; Provisional
Probab=60.58 E-value=9.5 Score=29.33 Aligned_cols=27 Identities=22% Similarity=0.252 Sum_probs=20.6
Q ss_pred HHHHHHhhC--CC--cEEEEeecCCCCCCce
Q psy12526 66 RDILDNAFQ--GY--NACIFAYGQTGEKTNY 92 (103)
Q Consensus 66 ~~lv~~~~~--G~--n~ti~aYGqtgSGKT~ 92 (103)
-+-++.+|. |+ ...+.-||+.|||||.
T Consensus 45 i~~LD~~LG~GGip~G~IteI~G~~GsGKTt 75 (349)
T PRK09354 45 SLALDIALGIGGLPRGRIVEIYGPESSGKTT 75 (349)
T ss_pred cHHHHHHhcCCCCcCCeEEEEECCCCCCHHH
Confidence 466777777 44 4467789999999986
No 305
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=60.57 E-value=5.2 Score=30.58 Aligned_cols=32 Identities=25% Similarity=0.292 Sum_probs=18.9
Q ss_pred HHHHHHHHHhhCCCcEEEEeecCCCCCCceEec
Q psy12526 63 ALGRDILDNAFQGYNACIFAYGQTGEKTNYLLN 95 (103)
Q Consensus 63 ~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~ 95 (103)
..+.+.++.+....+- +.-.|.||||||..|.
T Consensus 128 ~~~~~~~~~~~~~~~~-ivl~G~TGsGKT~iL~ 159 (345)
T PRK11784 128 RFVIDTLEEAPAQFPL-VVLGGNTGSGKTELLQ 159 (345)
T ss_pred HhhHHHHhhhcccCce-EecCCCCcccHHHHHH
Confidence 3333444443334443 3367899999998664
No 306
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=60.51 E-value=9.2 Score=33.06 Aligned_cols=21 Identities=10% Similarity=-0.017 Sum_probs=14.9
Q ss_pred CCCcEEEEeecCCCCCCceEe
Q psy12526 74 QGYNACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 74 ~G~n~ti~aYGqtgSGKT~Tm 94 (103)
.+...-++..|+||||||-..
T Consensus 469 ~~~~~d~Ll~adTGsGKT~va 489 (926)
T TIGR00580 469 SPRPMDRLVCGDVGFGKTEVA 489 (926)
T ss_pred ccCcCCEEEECCCCccHHHHH
Confidence 333344678999999999643
No 307
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=60.49 E-value=9.6 Score=29.16 Aligned_cols=27 Identities=19% Similarity=0.261 Sum_probs=20.0
Q ss_pred HHHHHHhhCC-C--cEEEEeecCCCCCCce
Q psy12526 66 RDILDNAFQG-Y--NACIFAYGQTGEKTNY 92 (103)
Q Consensus 66 ~~lv~~~~~G-~--n~ti~aYGqtgSGKT~ 92 (103)
-+-++.+|.| + .....-||..|||||.
T Consensus 112 ~~~LD~lLgGGi~~G~ItEI~G~~GsGKTq 141 (344)
T PLN03187 112 SQALDELLGGGIETRCITEAFGEFRSGKTQ 141 (344)
T ss_pred cHhHHhhcCCCCCCCeEEEEecCCCCChhH
Confidence 3557777774 2 4456789999999986
No 308
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=60.42 E-value=7 Score=32.24 Aligned_cols=19 Identities=16% Similarity=0.426 Sum_probs=15.3
Q ss_pred CCcEEEEeecCCCCCCceE
Q psy12526 75 GYNACIFAYGQTGEKTNYL 93 (103)
Q Consensus 75 G~n~ti~aYGqtgSGKT~T 93 (103)
..+..|+-.|++|+||++.
T Consensus 397 ~~~~pVLI~GE~GTGK~~l 415 (686)
T PRK15429 397 QSDSTVLILGETGTGKELI 415 (686)
T ss_pred CCCCCEEEECCCCcCHHHH
Confidence 4466788899999999863
No 309
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=60.40 E-value=8 Score=32.45 Aligned_cols=24 Identities=13% Similarity=0.094 Sum_probs=18.1
Q ss_pred HHHHhhCCCcEEEEeecCCCCCCceE
Q psy12526 68 ILDNAFQGYNACIFAYGQTGEKTNYL 93 (103)
Q Consensus 68 lv~~~~~G~n~ti~aYGqtgSGKT~T 93 (103)
.+..+++|.|..+ --+||||||..
T Consensus 44 ai~~il~G~nvvv--~apTGSGKTla 67 (742)
T TIGR03817 44 AAELAHAGRHVVV--ATGTASGKSLA 67 (742)
T ss_pred HHHHHHCCCCEEE--ECCCCCcHHHH
Confidence 3456789999654 56899999863
No 310
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=60.10 E-value=4.2 Score=31.89 Aligned_cols=16 Identities=31% Similarity=0.472 Sum_probs=13.8
Q ss_pred EEEEeecCCCCCCceE
Q psy12526 78 ACIFAYGQTGEKTNYL 93 (103)
Q Consensus 78 ~ti~aYGqtgSGKT~T 93 (103)
..|+-+|+||+|||..
T Consensus 117 ~~iLL~GP~GsGKT~l 132 (413)
T TIGR00382 117 SNILLIGPTGSGKTLL 132 (413)
T ss_pred ceEEEECCCCcCHHHH
Confidence 4688999999999874
No 311
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=59.77 E-value=5.4 Score=30.64 Aligned_cols=20 Identities=15% Similarity=0.096 Sum_probs=16.7
Q ss_pred CCcEEEEeecCCCCCCceEe
Q psy12526 75 GYNACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 75 G~n~ti~aYGqtgSGKT~Tm 94 (103)
+.-..|+--|-+|+|||.|+
T Consensus 137 ~~p~Vil~vGVNG~GKTTTI 156 (340)
T COG0552 137 KKPFVILFVGVNGVGKTTTI 156 (340)
T ss_pred CCcEEEEEEecCCCchHhHH
Confidence 34567888899999999986
No 312
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=59.73 E-value=4.1 Score=32.87 Aligned_cols=15 Identities=20% Similarity=0.492 Sum_probs=12.6
Q ss_pred EEEeecCCCCCCceE
Q psy12526 79 CIFAYGQTGEKTNYL 93 (103)
Q Consensus 79 ti~aYGqtgSGKT~T 93 (103)
.|+-||+.|+|||..
T Consensus 218 GILLyGPPGTGKT~L 232 (512)
T TIGR03689 218 GVLLYGPPGCGKTLI 232 (512)
T ss_pred ceEEECCCCCcHHHH
Confidence 367799999999964
No 313
>KOG0922|consensus
Probab=59.63 E-value=6.1 Score=32.90 Aligned_cols=18 Identities=22% Similarity=0.438 Sum_probs=13.5
Q ss_pred cEEEEeecCCCCCCceEe
Q psy12526 77 NACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 77 n~ti~aYGqtgSGKT~Tm 94 (103)
|-.+..-|.||||||.-+
T Consensus 66 nqvlIviGeTGsGKSTQi 83 (674)
T KOG0922|consen 66 NQVLIVIGETGSGKSTQI 83 (674)
T ss_pred CCEEEEEcCCCCCccccH
Confidence 445557899999998643
No 314
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=59.58 E-value=11 Score=24.91 Aligned_cols=29 Identities=17% Similarity=0.315 Sum_probs=18.0
Q ss_pred HHHHHHHHhhCCCcEEEEeecCCCCCCceEe
Q psy12526 64 LGRDILDNAFQGYNACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 64 ~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm 94 (103)
+++.+...+..| ..|+-.|..|+|||.-+
T Consensus 11 l~~~l~~~l~~~--~~i~l~G~lGaGKTtl~ 39 (133)
T TIGR00150 11 FGKAFAKPLDFG--TVVLLKGDLGAGKTTLV 39 (133)
T ss_pred HHHHHHHhCCCC--CEEEEEcCCCCCHHHHH
Confidence 344444333333 35677999999998744
No 315
>CHL00195 ycf46 Ycf46; Provisional
Probab=59.47 E-value=3.4 Score=33.07 Aligned_cols=16 Identities=13% Similarity=0.204 Sum_probs=13.7
Q ss_pred EEEEeecCCCCCCceE
Q psy12526 78 ACIFAYGQTGEKTNYL 93 (103)
Q Consensus 78 ~ti~aYGqtgSGKT~T 93 (103)
-.|+-||..|+|||.+
T Consensus 260 kGILL~GPpGTGKTll 275 (489)
T CHL00195 260 RGLLLVGIQGTGKSLT 275 (489)
T ss_pred ceEEEECCCCCcHHHH
Confidence 4588999999999864
No 316
>KOG0729|consensus
Probab=59.36 E-value=5.5 Score=30.37 Aligned_cols=37 Identities=16% Similarity=0.259 Sum_probs=21.5
Q ss_pred CHHHHHHHHH-HHHHHH---hhCCCc--EEEEeecCCCCCCce
Q psy12526 56 SQEKVFDALG-RDILDN---AFQGYN--ACIFAYGQTGEKTNY 92 (103)
Q Consensus 56 ~q~~v~~~~~-~~lv~~---~~~G~n--~ti~aYGqtgSGKT~ 92 (103)
.|-+-..+++ .||+.. +--|.. --|+.||+.|+|||-
T Consensus 184 eqieklrevve~pll~perfv~lgidppkgvllygppgtgktl 226 (435)
T KOG0729|consen 184 EQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTL 226 (435)
T ss_pred HHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhH
Confidence 4544333333 455543 222442 247899999999985
No 317
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=58.78 E-value=3.3 Score=30.10 Aligned_cols=21 Identities=29% Similarity=0.378 Sum_probs=14.3
Q ss_pred hhCCCcEEEEeecCCCCCCceEe
Q psy12526 72 AFQGYNACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 72 ~~~G~n~ti~aYGqtgSGKT~Tm 94 (103)
+-+|-=+-| .|++|+|||.++
T Consensus 25 ae~Gei~Gl--LG~NGAGKTT~L 45 (245)
T COG4555 25 AEEGEITGL--LGENGAGKTTLL 45 (245)
T ss_pred eccceEEEE--EcCCCCCchhHH
Confidence 344544433 699999999864
No 318
>KOG0923|consensus
Probab=58.55 E-value=6.9 Score=33.08 Aligned_cols=18 Identities=17% Similarity=0.359 Sum_probs=14.6
Q ss_pred cEEEEeecCCCCCCceEe
Q psy12526 77 NACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 77 n~ti~aYGqtgSGKT~Tm 94 (103)
+..++--|.||||||.-+
T Consensus 280 ~QVLiI~GeTGSGKTTQi 297 (902)
T KOG0923|consen 280 HQVLIIVGETGSGKTTQI 297 (902)
T ss_pred CcEEEEEcCCCCCccccc
Confidence 456788999999999744
No 319
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=58.51 E-value=11 Score=33.71 Aligned_cols=24 Identities=25% Similarity=0.415 Sum_probs=16.6
Q ss_pred HHHHHhhCCCcEEEEeecCCCCCCce
Q psy12526 67 DILDNAFQGYNACIFAYGQTGEKTNY 92 (103)
Q Consensus 67 ~lv~~~~~G~n~ti~aYGqtgSGKT~ 92 (103)
.+++. ++. |-.++-.|.||||||.
T Consensus 74 ~Il~~-l~~-~~vvii~g~TGSGKTT 97 (1283)
T TIGR01967 74 DIAEA-IAE-NQVVIIAGETGSGKTT 97 (1283)
T ss_pred HHHHH-HHh-CceEEEeCCCCCCcHH
Confidence 44443 344 4466789999999996
No 320
>TIGR02759 TraD_Ftype type IV conjugative transfer system coupling protein TraD. The TraD protein performs an essential coupling function in conjugative type IV secretion systems. This protein sits at the inner membrane in contact with the assembled pilus and its scaffold as well as the relaxosome-plasmid DNA complex (through TraM).
Probab=58.21 E-value=3.3 Score=33.68 Aligned_cols=15 Identities=27% Similarity=0.430 Sum_probs=12.4
Q ss_pred EEeecCCCCCCceEe
Q psy12526 80 IFAYGQTGEKTNYLL 94 (103)
Q Consensus 80 i~aYGqtgSGKT~Tm 94 (103)
++.+|.||||||..|
T Consensus 179 ~li~G~tGsGKs~~i 193 (566)
T TIGR02759 179 ILIHGTTGSGKSVAI 193 (566)
T ss_pred eEEEcCCCCCHHHHH
Confidence 578999999999644
No 321
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=58.15 E-value=3.7 Score=33.52 Aligned_cols=16 Identities=25% Similarity=0.293 Sum_probs=12.6
Q ss_pred EEEeecCCCCCCceEe
Q psy12526 79 CIFAYGQTGEKTNYLL 94 (103)
Q Consensus 79 ti~aYGqtgSGKT~Tm 94 (103)
.|.-.|.+|+|||+|+
T Consensus 352 vIaLVGPtGvGKTTta 367 (559)
T PRK12727 352 VIALVGPTGAGKTTTI 367 (559)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4444599999999986
No 322
>KOG1532|consensus
Probab=57.97 E-value=4.3 Score=30.87 Aligned_cols=18 Identities=17% Similarity=0.344 Sum_probs=15.7
Q ss_pred cEEEEeecCCCCCCceEe
Q psy12526 77 NACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 77 n~ti~aYGqtgSGKT~Tm 94 (103)
-+||+.-|..|||||.-|
T Consensus 19 p~~ilVvGMAGSGKTTF~ 36 (366)
T KOG1532|consen 19 PVIILVVGMAGSGKTTFM 36 (366)
T ss_pred CcEEEEEecCCCCchhHH
Confidence 579999999999999754
No 323
>PF14553 YqbF: YqbF, hypothetical protein domain; PDB: 2HJQ_A.
Probab=57.75 E-value=5.3 Score=21.55 Aligned_cols=9 Identities=22% Similarity=0.434 Sum_probs=6.9
Q ss_pred CCceEeccC
Q psy12526 89 KTNYLLNGN 97 (103)
Q Consensus 89 GKT~Tm~G~ 97 (103)
||||+.+|-
T Consensus 3 GktY~~~g~ 11 (43)
T PF14553_consen 3 GKTYYAMGH 11 (43)
T ss_dssp -SEEEETTE
T ss_pred CcEEEEeee
Confidence 899999984
No 324
>TIGR03783 Bac_Flav_CT_G Bacteroides conjugation system ATPase, TraG family. Members of this family include the predicted ATPase, TraG, encoded by transfer region genes of conjugative transposons of Bacteroides, such as CTnDOT, found on the main chromosome. Members also include TraG homologs borne on plasmids in Bacteroides. The protein family is related to the conjugative transfer system ATPase VirB4.
Probab=57.57 E-value=3.1 Score=35.36 Aligned_cols=18 Identities=22% Similarity=0.480 Sum_probs=14.5
Q ss_pred cEEEEeecCCCCCCceEe
Q psy12526 77 NACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 77 n~ti~aYGqtgSGKT~Tm 94 (103)
|.-.+..|.+|||||..|
T Consensus 438 n~N~~I~G~sGsGKS~l~ 455 (829)
T TIGR03783 438 NRNKFILGPSGSGKSFFT 455 (829)
T ss_pred cCceEEECCCCCCHHHHH
Confidence 445667999999999866
No 325
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=57.56 E-value=5.9 Score=22.68 Aligned_cols=13 Identities=15% Similarity=0.225 Sum_probs=10.0
Q ss_pred EeecCCCCCCceE
Q psy12526 81 FAYGQTGEKTNYL 93 (103)
Q Consensus 81 ~aYGqtgSGKT~T 93 (103)
.--|..|||||..
T Consensus 3 ~i~G~~gsGKst~ 15 (69)
T cd02019 3 AITGGSGSGKSTV 15 (69)
T ss_pred EEECCCCCCHHHH
Confidence 3469999999853
No 326
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=57.33 E-value=5.7 Score=25.13 Aligned_cols=13 Identities=15% Similarity=0.273 Sum_probs=10.7
Q ss_pred EEeecCCCCCCce
Q psy12526 80 IFAYGQTGEKTNY 92 (103)
Q Consensus 80 i~aYGqtgSGKT~ 92 (103)
+.-.|.+|||||.
T Consensus 14 ~~i~G~nGsGKSt 26 (137)
T PF00005_consen 14 VAIVGPNGSGKST 26 (137)
T ss_dssp EEEEESTTSSHHH
T ss_pred EEEEccCCCcccc
Confidence 4458999999986
No 327
>PRK10689 transcription-repair coupling factor; Provisional
Probab=57.05 E-value=10 Score=33.59 Aligned_cols=37 Identities=16% Similarity=0.160 Sum_probs=23.0
Q ss_pred CCCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceE
Q psy12526 53 NFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYL 93 (103)
Q Consensus 53 ~~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~T 93 (103)
+...|.+.+..+...+ -.....-++..|+||||||-.
T Consensus 601 ~T~~Q~~aI~~il~d~----~~~~~~d~Ll~a~TGsGKT~v 637 (1147)
T PRK10689 601 TTPDQAQAINAVLSDM----CQPLAMDRLVCGDVGFGKTEV 637 (1147)
T ss_pred CCHHHHHHHHHHHHHh----hcCCCCCEEEEcCCCcCHHHH
Confidence 4556666665544332 233334478899999999953
No 328
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=56.99 E-value=13 Score=31.76 Aligned_cols=37 Identities=19% Similarity=0.302 Sum_probs=23.2
Q ss_pred CHHHHHHHHHHHHHHHhhCCC------cEEEEeecCCCCCCceE
Q psy12526 56 SQEKVFDALGRDILDNAFQGY------NACIFAYGQTGEKTNYL 93 (103)
Q Consensus 56 ~q~~v~~~~~~~lv~~~~~G~------n~ti~aYGqtgSGKT~T 93 (103)
.|...-+.+.. .+..+..|. .+.++-+|++|+|||++
T Consensus 569 GQ~~av~~v~~-~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~l 611 (852)
T TIGR03346 569 GQDEAVEAVSD-AIRRSRAGLSDPNRPIGSFLFLGPTGVGKTEL 611 (852)
T ss_pred CChHHHHHHHH-HHHHHhccCCCCCCCCeEEEEEcCCCCCHHHH
Confidence 45555555443 333444443 35677889999999974
No 329
>PRK13853 type IV secretion system protein VirB4; Provisional
Probab=56.85 E-value=3.2 Score=34.90 Aligned_cols=16 Identities=19% Similarity=0.370 Sum_probs=13.4
Q ss_pred EEEeecCCCCCCceEe
Q psy12526 79 CIFAYGQTGEKTNYLL 94 (103)
Q Consensus 79 ti~aYGqtgSGKT~Tm 94 (103)
-.+.+|.||||||..|
T Consensus 428 ~~~I~G~tGsGKS~l~ 443 (789)
T PRK13853 428 MTAIFGPIGRGKTTLM 443 (789)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3567999999999875
No 330
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=56.75 E-value=3.8 Score=34.66 Aligned_cols=18 Identities=28% Similarity=0.453 Sum_probs=14.8
Q ss_pred cEEEEeecCCCCCCceEe
Q psy12526 77 NACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 77 n~ti~aYGqtgSGKT~Tm 94 (103)
++-.+..|.||||||..|
T Consensus 456 ~g~~~i~G~tGsGKS~l~ 473 (818)
T PRK13830 456 VGHTLIFGPTGSGKSTLL 473 (818)
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 445688999999999876
No 331
>PTZ00035 Rad51 protein; Provisional
Probab=56.58 E-value=13 Score=28.15 Aligned_cols=28 Identities=18% Similarity=0.236 Sum_probs=20.8
Q ss_pred HHHHHHhhCC-C--cEEEEeecCCCCCCceE
Q psy12526 66 RDILDNAFQG-Y--NACIFAYGQTGEKTNYL 93 (103)
Q Consensus 66 ~~lv~~~~~G-~--n~ti~aYGqtgSGKT~T 93 (103)
-+-++.+|.| + ...+.-+|..|+|||.-
T Consensus 104 ~~~LD~lLgGGi~~G~iteI~G~~GsGKT~l 134 (337)
T PTZ00035 104 STQLDKLLGGGIETGSITELFGEFRTGKTQL 134 (337)
T ss_pred cHHHHHHhCCCCCCCeEEEEECCCCCchhHH
Confidence 4567788874 3 45567899999999863
No 332
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=56.37 E-value=2.6 Score=36.38 Aligned_cols=14 Identities=7% Similarity=0.159 Sum_probs=12.1
Q ss_pred eecCCCCCCceEec
Q psy12526 82 AYGQTGEKTNYLLN 95 (103)
Q Consensus 82 aYGqtgSGKT~Tm~ 95 (103)
-+--+|||||.||+
T Consensus 278 IWHtqGSGKTlTm~ 291 (962)
T COG0610 278 IWHTQGSGKTLTMF 291 (962)
T ss_pred EEeecCCchHHHHH
Confidence 37789999999996
No 333
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=56.31 E-value=11 Score=28.24 Aligned_cols=17 Identities=12% Similarity=-0.080 Sum_probs=13.2
Q ss_pred EEEEeecCCCCCCceEe
Q psy12526 78 ACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 78 ~ti~aYGqtgSGKT~Tm 94 (103)
..|---|.+|||||.++
T Consensus 63 ~IIGIaG~~GSGKSTla 79 (290)
T TIGR00554 63 YIISIAGSVAVGKSTTA 79 (290)
T ss_pred EEEEEECCCCCCHHHHH
Confidence 34445699999999876
No 334
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=56.15 E-value=7.7 Score=33.25 Aligned_cols=25 Identities=12% Similarity=0.069 Sum_probs=17.4
Q ss_pred HHHHhhCCCcEEEEeecCCCCCCceE
Q psy12526 68 ILDNAFQGYNACIFAYGQTGEKTNYL 93 (103)
Q Consensus 68 lv~~~~~G~n~ti~aYGqtgSGKT~T 93 (103)
++..+++|.+- ++.--+||||||..
T Consensus 23 ~i~~il~G~~~-v~~~apTGSGKTaa 47 (844)
T TIGR02621 23 LAERFVAGQPP-ESCSTPTGLGKTSI 47 (844)
T ss_pred HHHHHHcCCCc-ceEecCCCCcccHH
Confidence 34456788753 44456999999974
No 335
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=55.83 E-value=5.7 Score=31.04 Aligned_cols=34 Identities=15% Similarity=0.424 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHH-hhC--CCc--EEEEeecCCCCCCc
Q psy12526 58 EKVFDALGRDILDN-AFQ--GYN--ACIFAYGQTGEKTN 91 (103)
Q Consensus 58 ~~v~~~~~~~lv~~-~~~--G~n--~ti~aYGqtgSGKT 91 (103)
+++-+.+..||.+. +|+ |.. --|+-||+-|+|||
T Consensus 161 ~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKT 199 (406)
T COG1222 161 QEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKT 199 (406)
T ss_pred HHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHH
Confidence 44555555666544 222 332 24778999999997
No 336
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=55.79 E-value=10 Score=31.62 Aligned_cols=39 Identities=8% Similarity=0.126 Sum_probs=22.8
Q ss_pred CCCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEec
Q psy12526 53 NFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLN 95 (103)
Q Consensus 53 ~~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~ 95 (103)
+...|+..... ++.-+.......++-||..|+|||....
T Consensus 183 ~~igr~~ei~~----~~~~L~~~~~~n~lL~G~pG~GKT~l~~ 221 (731)
T TIGR02639 183 PLIGREDELER----TIQVLCRRKKNNPLLVGEPGVGKTAIAE 221 (731)
T ss_pred cccCcHHHHHH----HHHHHhcCCCCceEEECCCCCCHHHHHH
Confidence 44456555544 3333333333345679999999998654
No 337
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=55.63 E-value=5.8 Score=32.98 Aligned_cols=15 Identities=20% Similarity=0.523 Sum_probs=12.5
Q ss_pred EEEeecCCCCCCceE
Q psy12526 79 CIFAYGQTGEKTNYL 93 (103)
Q Consensus 79 ti~aYGqtgSGKT~T 93 (103)
.|+-||..|+|||..
T Consensus 489 giLL~GppGtGKT~l 503 (733)
T TIGR01243 489 GVLLFGPPGTGKTLL 503 (733)
T ss_pred eEEEECCCCCCHHHH
Confidence 467799999999874
No 338
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=55.58 E-value=9.5 Score=30.44 Aligned_cols=19 Identities=16% Similarity=0.398 Sum_probs=15.5
Q ss_pred CCcEEEEeecCCCCCCceE
Q psy12526 75 GYNACIFAYGQTGEKTNYL 93 (103)
Q Consensus 75 G~n~ti~aYGqtgSGKT~T 93 (103)
..+..|+-+|++|+||++.
T Consensus 217 ~~~~pvli~Ge~GtGK~~l 235 (534)
T TIGR01817 217 RSNSTVLLRGESGTGKELI 235 (534)
T ss_pred CcCCCEEEECCCCccHHHH
Confidence 4566788899999999864
No 339
>PF05872 DUF853: Bacterial protein of unknown function (DUF853); InterPro: IPR008571 Members of this family have a P-loop containing nucleotide triphosphate hydrolases fold. This family is restricted to bacterial proteins, none of which have currently been characterised.
Probab=55.42 E-value=5.3 Score=32.13 Aligned_cols=14 Identities=29% Similarity=0.340 Sum_probs=12.2
Q ss_pred eecCCCCCCceEec
Q psy12526 82 AYGQTGEKTNYLLN 95 (103)
Q Consensus 82 aYGqtgSGKT~Tm~ 95 (103)
--|.||+|||-|+.
T Consensus 24 IaGATGTGKTvTLq 37 (502)
T PF05872_consen 24 IAGATGTGKTVTLQ 37 (502)
T ss_pred eeccCCCCceehHH
Confidence 47999999999975
No 340
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=55.24 E-value=6.4 Score=31.02 Aligned_cols=18 Identities=17% Similarity=0.196 Sum_probs=14.7
Q ss_pred cEEEEeecCCCCCCceEe
Q psy12526 77 NACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 77 n~ti~aYGqtgSGKT~Tm 94 (103)
...++..|.+|||||.|.
T Consensus 99 p~vi~~vG~~GsGKTTta 116 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTC 116 (428)
T ss_pred CEEEEEECCCCCcHHHHH
Confidence 356778899999999874
No 341
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=55.22 E-value=11 Score=26.41 Aligned_cols=24 Identities=17% Similarity=0.160 Sum_probs=15.8
Q ss_pred HHhhCCCc--EEEEeecCCCCCCceE
Q psy12526 70 DNAFQGYN--ACIFAYGQTGEKTNYL 93 (103)
Q Consensus 70 ~~~~~G~n--~ti~aYGqtgSGKT~T 93 (103)
+.++.|+. ..++-.|.+|+|||..
T Consensus 4 D~~~~Gl~~G~l~lI~G~~G~GKT~~ 29 (242)
T cd00984 4 DNLTGGLQPGDLIIIAARPSMGKTAF 29 (242)
T ss_pred hhhhcCCCCCeEEEEEeCCCCCHHHH
Confidence 34444552 2456689999999864
No 342
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=54.89 E-value=4.2 Score=33.16 Aligned_cols=18 Identities=6% Similarity=0.152 Sum_probs=14.9
Q ss_pred EEEEeecCCCCCCceEec
Q psy12526 78 ACIFAYGQTGEKTNYLLN 95 (103)
Q Consensus 78 ~ti~aYGqtgSGKT~Tm~ 95 (103)
.-++..|-.|||||.||.
T Consensus 15 ~~~~V~Ag~GSGKT~~L~ 32 (664)
T TIGR01074 15 GPCLVLAGAGSGKTRVIT 32 (664)
T ss_pred CCEEEEecCCCCHHHHHH
Confidence 346778999999999885
No 343
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=54.74 E-value=6.2 Score=26.98 Aligned_cols=13 Identities=15% Similarity=0.383 Sum_probs=10.6
Q ss_pred eecCCCCCCceEe
Q psy12526 82 AYGQTGEKTNYLL 94 (103)
Q Consensus 82 aYGqtgSGKT~Tm 94 (103)
-.|.+|||||-.|
T Consensus 27 i~G~NGsGKSnil 39 (178)
T cd03239 27 IVGPNGSGKSNIV 39 (178)
T ss_pred EECCCCCCHHHHH
Confidence 6899999998543
No 344
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=54.67 E-value=17 Score=30.54 Aligned_cols=15 Identities=20% Similarity=0.255 Sum_probs=12.5
Q ss_pred EEEeecCCCCCCceE
Q psy12526 79 CIFAYGQTGEKTNYL 93 (103)
Q Consensus 79 ti~aYGqtgSGKT~T 93 (103)
.++-||++|+|||+.
T Consensus 349 ~lll~GppG~GKT~l 363 (775)
T TIGR00763 349 ILCLVGPPGVGKTSL 363 (775)
T ss_pred eEEEECCCCCCHHHH
Confidence 466799999999974
No 345
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=54.36 E-value=3.3 Score=31.68 Aligned_cols=13 Identities=31% Similarity=0.496 Sum_probs=10.7
Q ss_pred eecCCCCCCceEe
Q psy12526 82 AYGQTGEKTNYLL 94 (103)
Q Consensus 82 aYGqtgSGKT~Tm 94 (103)
-+|.+|||||..+
T Consensus 33 LlGpSGaGKsTlL 45 (345)
T COG1118 33 LLGPSGAGKSTLL 45 (345)
T ss_pred EECCCCCcHHHHH
Confidence 3799999999754
No 346
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=54.27 E-value=5.3 Score=26.85 Aligned_cols=28 Identities=21% Similarity=0.201 Sum_probs=17.0
Q ss_pred HHHHHhhCCCc---EEEEeecCCCCCCceEe
Q psy12526 67 DILDNAFQGYN---ACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 67 ~lv~~~~~G~n---~ti~aYGqtgSGKT~Tm 94 (103)
+-++.++.|+- .-++-+|++|+|||+.+
T Consensus 19 ~~~~~li~g~~~~g~l~~i~g~~g~GKT~~~ 49 (193)
T PF13481_consen 19 PPLDWLIDGLLPRGELTLIAGPPGSGKTTLA 49 (193)
T ss_dssp ----EEETTEE-TTSEEEEEECSTSSHHHHH
T ss_pred CCcceeECCcccCCeEEEEEeCCCCCHHHHH
Confidence 44455665552 24667999999999754
No 347
>KOG0330|consensus
Probab=54.17 E-value=7.4 Score=30.83 Aligned_cols=23 Identities=17% Similarity=0.258 Sum_probs=17.0
Q ss_pred HHHhhCCCcEEEEeecCCCCCCceE
Q psy12526 69 LDNAFQGYNACIFAYGQTGEKTNYL 93 (103)
Q Consensus 69 v~~~~~G~n~ti~aYGqtgSGKT~T 93 (103)
|..++.|-.+ ++..|||||||-+
T Consensus 92 iP~~L~g~dv--IglAeTGSGKT~a 114 (476)
T KOG0330|consen 92 IPVALGGRDV--IGLAETGSGKTGA 114 (476)
T ss_pred cchhhCCCcE--EEEeccCCCchhh
Confidence 4456788775 4677999999854
No 348
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=54.15 E-value=21 Score=32.47 Aligned_cols=32 Identities=22% Similarity=0.344 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHhh-CCCcEEEEeecCCCCCCce
Q psy12526 60 VFDALGRDILDNAF-QGYNACIFAYGQTGEKTNY 92 (103)
Q Consensus 60 v~~~~~~~lv~~~~-~G~n~ti~aYGqtgSGKT~ 92 (103)
||.- +...-..++ ++-|-||+.-|++|+|||-
T Consensus 135 vfAI-Ae~aY~~lls~~eNQtIiISGESGAGKTe 167 (1463)
T COG5022 135 VFAI-AEEAYRNLLSEKENQTIIISGESGAGKTE 167 (1463)
T ss_pred HHHH-HHHHHHHHHhcCCCceEEEecCCCCCchH
Confidence 5532 334444444 5779999999999999984
No 349
>KOG1800|consensus
Probab=53.90 E-value=12 Score=29.70 Aligned_cols=21 Identities=33% Similarity=0.713 Sum_probs=18.0
Q ss_pred HHHHhhCCCcEEEEeecCCCC
Q psy12526 68 ILDNAFQGYNACIFAYGQTGE 88 (103)
Q Consensus 68 lv~~~~~G~n~ti~aYGqtgS 88 (103)
.+..+.++|.|.|+|||..|-
T Consensus 101 sl~eL~~~ydavvLaYGa~~d 121 (468)
T KOG1800|consen 101 SLKELTDNYDAVVLAYGADGD 121 (468)
T ss_pred cHHHHhhcccEEEEEecCCCC
Confidence 456788999999999999884
No 350
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=53.83 E-value=7.2 Score=27.83 Aligned_cols=13 Identities=23% Similarity=0.358 Sum_probs=10.8
Q ss_pred EeecCCCCCCceE
Q psy12526 81 FAYGQTGEKTNYL 93 (103)
Q Consensus 81 ~aYGqtgSGKT~T 93 (103)
.-+|++|||||..
T Consensus 26 ~i~G~NGsGKStl 38 (247)
T cd03275 26 CIIGPNGSGKSNL 38 (247)
T ss_pred EEECCCCCCHHHH
Confidence 4589999999864
No 351
>TIGR02767 TraG-Ti Ti-type conjugative transfer system protien TraG. This protein is found in the Agrobacterium tumefaciens Ti plasmid tra region responsible for conjugative transfer of the entire plasmid among Agrobacterium strains. The protein is distantly related to the F-type conjugation system TraG protein. Both of these systems are examples of type IV secretion systems.
Probab=53.53 E-value=9 Score=31.67 Aligned_cols=19 Identities=5% Similarity=0.111 Sum_probs=15.5
Q ss_pred cEEEEeecCCCCCCceEec
Q psy12526 77 NACIFAYGQTGEKTNYLLN 95 (103)
Q Consensus 77 n~ti~aYGqtgSGKT~Tm~ 95 (103)
+.=++.+|.||||||.++.
T Consensus 211 ~~H~lv~ApTgsGKgvg~V 229 (623)
T TIGR02767 211 STHMIFFAGSGGFKTTSVV 229 (623)
T ss_pred CceEEEEeCCCCCccceee
Confidence 3467899999999998754
No 352
>PLN02165 adenylate isopentenyltransferase
Probab=53.14 E-value=6.7 Score=30.01 Aligned_cols=15 Identities=27% Similarity=0.445 Sum_probs=11.8
Q ss_pred EEEeecCCCCCCceE
Q psy12526 79 CIFAYGQTGEKTNYL 93 (103)
Q Consensus 79 ti~aYGqtgSGKT~T 93 (103)
.|.-.|.||||||..
T Consensus 45 iivIiGPTGSGKStL 59 (334)
T PLN02165 45 VVVIMGATGSGKSRL 59 (334)
T ss_pred EEEEECCCCCcHHHH
Confidence 455689999999864
No 353
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=53.13 E-value=4.5 Score=28.04 Aligned_cols=13 Identities=15% Similarity=0.409 Sum_probs=11.0
Q ss_pred eecCCCCCCceEe
Q psy12526 82 AYGQTGEKTNYLL 94 (103)
Q Consensus 82 aYGqtgSGKT~Tm 94 (103)
-.|.+|||||..+
T Consensus 27 i~G~nGsGKStll 39 (197)
T cd03278 27 IVGPNGSGKSNII 39 (197)
T ss_pred EECCCCCCHHHHH
Confidence 5899999998754
No 354
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=53.09 E-value=7.7 Score=30.69 Aligned_cols=39 Identities=13% Similarity=0.204 Sum_probs=26.6
Q ss_pred CCCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCce
Q psy12526 53 NFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNY 92 (103)
Q Consensus 53 ~~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~ 92 (103)
+...|+.+.... .+|-..+-.|.=.+.+-||+-|+|||.
T Consensus 25 e~vGQ~HLlg~~-~~lrr~v~~~~l~SmIl~GPPG~GKTT 63 (436)
T COG2256 25 EVVGQEHLLGEG-KPLRRAVEAGHLHSMILWGPPGTGKTT 63 (436)
T ss_pred HhcChHhhhCCC-chHHHHHhcCCCceeEEECCCCCCHHH
Confidence 455777776542 354444445666677789999999985
No 355
>PRK05973 replicative DNA helicase; Provisional
Probab=53.08 E-value=10 Score=27.44 Aligned_cols=22 Identities=9% Similarity=0.199 Sum_probs=15.7
Q ss_pred HhhCCC--cEEEEeecCCCCCCce
Q psy12526 71 NAFQGY--NACIFAYGQTGEKTNY 92 (103)
Q Consensus 71 ~~~~G~--n~ti~aYGqtgSGKT~ 92 (103)
.+..|+ ...++-.|.+|+|||.
T Consensus 56 ~l~GGl~~Gsl~LIaG~PG~GKT~ 79 (237)
T PRK05973 56 ELFSQLKPGDLVLLGARPGHGKTL 79 (237)
T ss_pred HhcCCCCCCCEEEEEeCCCCCHHH
Confidence 344555 2356779999999986
No 356
>COG1074 RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair]
Probab=53.02 E-value=5.4 Score=35.05 Aligned_cols=19 Identities=11% Similarity=0.364 Sum_probs=15.2
Q ss_pred cEEEEeecCCCCCCceEec
Q psy12526 77 NACIFAYGQTGEKTNYLLN 95 (103)
Q Consensus 77 n~ti~aYGqtgSGKT~Tm~ 95 (103)
+.+++.=...||||||||.
T Consensus 16 ~~~~lveASAGSGKT~vL~ 34 (1139)
T COG1074 16 GQSVLVEASAGTGKTFVLA 34 (1139)
T ss_pred CCcEEEEEcCCCCchhHHH
Confidence 4566667789999999985
No 357
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=53.02 E-value=3.4 Score=30.67 Aligned_cols=13 Identities=23% Similarity=0.325 Sum_probs=10.7
Q ss_pred eecCCCCCCceEe
Q psy12526 82 AYGQTGEKTNYLL 94 (103)
Q Consensus 82 aYGqtgSGKT~Tm 94 (103)
-.|.+|+|||.+|
T Consensus 38 llGpNGaGKSTLl 50 (306)
T PRK13537 38 LLGPNGAGKTTTL 50 (306)
T ss_pred EECCCCCCHHHHH
Confidence 3699999999754
No 358
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=52.95 E-value=6.5 Score=31.24 Aligned_cols=16 Identities=25% Similarity=0.326 Sum_probs=13.3
Q ss_pred EEEEeecCCCCCCceE
Q psy12526 78 ACIFAYGQTGEKTNYL 93 (103)
Q Consensus 78 ~ti~aYGqtgSGKT~T 93 (103)
.-|+-+|.+|+|||+.
T Consensus 48 ~~ILLiGppG~GKT~l 63 (441)
T TIGR00390 48 KNILMIGPTGVGKTEI 63 (441)
T ss_pred ceEEEECCCCCCHHHH
Confidence 4578899999999863
No 359
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=52.92 E-value=7.6 Score=29.95 Aligned_cols=29 Identities=28% Similarity=0.391 Sum_probs=21.1
Q ss_pred HHHHHhhCC-C--cEEEEeecCCCCCCceEec
Q psy12526 67 DILDNAFQG-Y--NACIFAYGQTGEKTNYLLN 95 (103)
Q Consensus 67 ~lv~~~~~G-~--n~ti~aYGqtgSGKT~Tm~ 95 (103)
+-++.++.| + ...++-+|..|+|||..++
T Consensus 69 ~eLD~vLgGGi~~GslvLI~G~pG~GKStLll 100 (372)
T cd01121 69 EELDRVLGGGLVPGSVILIGGDPGIGKSTLLL 100 (372)
T ss_pred HHHHHhhcCCccCCeEEEEEeCCCCCHHHHHH
Confidence 446677754 2 4578899999999997543
No 360
>PF13654 AAA_32: AAA domain; PDB: 3K1J_B.
Probab=52.90 E-value=4.5 Score=32.54 Aligned_cols=39 Identities=31% Similarity=0.419 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEec
Q psy12526 54 FASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLN 95 (103)
Q Consensus 54 ~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~ 95 (103)
...|+...+.+-. -+.-=-.||| ||+.|..|+||+..+.
T Consensus 10 ~iGQ~RA~~Al~~-gl~i~~~GYN--Ifv~G~~GtGr~t~v~ 48 (509)
T PF13654_consen 10 IIGQERAVEALEF-GLGIRKPGYN--IFVMGPPGTGRRTYVR 48 (509)
T ss_dssp ------------------------------------------
T ss_pred ccccccccccccc-cccccccccc--cccccccccccccccc
Confidence 4466655554421 1111136999 6889999999987653
No 361
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=52.87 E-value=11 Score=25.89 Aligned_cols=23 Identities=26% Similarity=0.424 Sum_probs=16.1
Q ss_pred HHHhhCCCcEEEEeecCCCCCCceE
Q psy12526 69 LDNAFQGYNACIFAYGQTGEKTNYL 93 (103)
Q Consensus 69 v~~~~~G~n~ti~aYGqtgSGKT~T 93 (103)
+...+.+ . ++.-.|++|.||+..
T Consensus 29 l~~~l~~-k-~~vl~G~SGvGKSSL 51 (161)
T PF03193_consen 29 LKELLKG-K-TSVLLGQSGVGKSSL 51 (161)
T ss_dssp HHHHHTT-S-EEEEECSTTSSHHHH
T ss_pred HHHHhcC-C-EEEEECCCCCCHHHH
Confidence 4456666 3 445589999999863
No 362
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=52.75 E-value=5.7 Score=28.89 Aligned_cols=18 Identities=33% Similarity=0.564 Sum_probs=13.0
Q ss_pred CCCcEEEEeecCCCCCCceEe
Q psy12526 74 QGYNACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 74 ~G~n~ti~aYGqtgSGKT~Tm 94 (103)
.|+|+ -.|++|||||-.|
T Consensus 21 ~~~~~---i~G~nGsGKS~il 38 (276)
T cd03241 21 EGLTV---LTGETGAGKSILL 38 (276)
T ss_pred CCeEE---EEcCCCCCHHHHH
Confidence 45554 4799999998543
No 363
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=52.53 E-value=4.6 Score=27.75 Aligned_cols=14 Identities=21% Similarity=0.370 Sum_probs=11.0
Q ss_pred EeecCCCCCCceEe
Q psy12526 81 FAYGQTGEKTNYLL 94 (103)
Q Consensus 81 ~aYGqtgSGKT~Tm 94 (103)
--.|++|||||..+
T Consensus 25 ~l~G~nG~GKSTLl 38 (176)
T cd03238 25 VVTGVSGSGKSTLV 38 (176)
T ss_pred EEECCCCCCHHHHH
Confidence 34799999999754
No 364
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=52.42 E-value=3.2 Score=28.58 Aligned_cols=12 Identities=25% Similarity=0.385 Sum_probs=10.1
Q ss_pred eecCCCCCCceE
Q psy12526 82 AYGQTGEKTNYL 93 (103)
Q Consensus 82 aYGqtgSGKT~T 93 (103)
--|.+|||||..
T Consensus 32 l~G~nGsGKSTL 43 (211)
T cd03225 32 IVGPNGSGKSTL 43 (211)
T ss_pred EECCCCCCHHHH
Confidence 369999999974
No 365
>CHL00176 ftsH cell division protein; Validated
Probab=52.41 E-value=6.4 Score=32.55 Aligned_cols=16 Identities=19% Similarity=0.337 Sum_probs=13.6
Q ss_pred EEEeecCCCCCCceEe
Q psy12526 79 CIFAYGQTGEKTNYLL 94 (103)
Q Consensus 79 ti~aYGqtgSGKT~Tm 94 (103)
.|+-||+.|+|||+..
T Consensus 218 gVLL~GPpGTGKT~LA 233 (638)
T CHL00176 218 GVLLVGPPGTGKTLLA 233 (638)
T ss_pred eEEEECCCCCCHHHHH
Confidence 4788999999999753
No 366
>KOG2035|consensus
Probab=52.23 E-value=19 Score=27.57 Aligned_cols=15 Identities=20% Similarity=0.481 Sum_probs=12.2
Q ss_pred EEEeecCCCCCCceE
Q psy12526 79 CIFAYGQTGEKTNYL 93 (103)
Q Consensus 79 ti~aYGqtgSGKT~T 93 (103)
-++.||++|+||-..
T Consensus 36 Hll~yGPSGaGKKTr 50 (351)
T KOG2035|consen 36 HLLVYGPSGAGKKTR 50 (351)
T ss_pred eEEEECCCCCCchhh
Confidence 467899999999554
No 367
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=52.10 E-value=20 Score=26.98 Aligned_cols=28 Identities=18% Similarity=0.222 Sum_probs=19.1
Q ss_pred HHHHHhhCC-C--cEEEEeecCCCCCCceEe
Q psy12526 67 DILDNAFQG-Y--NACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 67 ~lv~~~~~G-~--n~ti~aYGqtgSGKT~Tm 94 (103)
+-++.++.| + ...+..||..|+|||.-+
T Consensus 83 ~~lD~ll~gGi~~g~i~~i~G~~g~GKT~l~ 113 (316)
T TIGR02239 83 KELDKLLGGGIETGSITEIFGEFRTGKTQLC 113 (316)
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCcCHHH
Confidence 445666653 3 345678999999998643
No 368
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=51.94 E-value=13 Score=33.09 Aligned_cols=26 Identities=27% Similarity=0.584 Sum_probs=19.9
Q ss_pred HHHHHHhhCCCcEEEEeecCCCCCCceE
Q psy12526 66 RDILDNAFQGYNACIFAYGQTGEKTNYL 93 (103)
Q Consensus 66 ~~lv~~~~~G~n~ti~aYGqtgSGKT~T 93 (103)
..+|..+++|.++ ++--+||+|||-+
T Consensus 466 ~eaI~aiL~GrDV--LVimPTGSGKSLc 491 (1195)
T PLN03137 466 REIINATMSGYDV--FVLMPTGGGKSLT 491 (1195)
T ss_pred HHHHHHHHcCCCE--EEEcCCCccHHHH
Confidence 3456778999984 5677999999863
No 369
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=51.87 E-value=10 Score=30.43 Aligned_cols=19 Identities=16% Similarity=0.142 Sum_probs=16.2
Q ss_pred CcEEEEeecCCCCCCceEe
Q psy12526 76 YNACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 76 ~n~ti~aYGqtgSGKT~Tm 94 (103)
....|+..|.+|+|||.+.
T Consensus 254 ~p~vil~~G~~G~GKSt~a 272 (475)
T PRK12337 254 RPLHVLIGGVSGVGKSVLA 272 (475)
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 4678899999999999764
No 370
>PRK11823 DNA repair protein RadA; Provisional
Probab=51.76 E-value=14 Score=29.18 Aligned_cols=28 Identities=25% Similarity=0.399 Sum_probs=21.1
Q ss_pred HHHHHhhCC-C--cEEEEeecCCCCCCceEe
Q psy12526 67 DILDNAFQG-Y--NACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 67 ~lv~~~~~G-~--n~ti~aYGqtgSGKT~Tm 94 (103)
+-++.++.| + ...++-+|..|+|||.-+
T Consensus 67 ~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~ 97 (446)
T PRK11823 67 GELDRVLGGGLVPGSVVLIGGDPGIGKSTLL 97 (446)
T ss_pred HHHHHHhcCCccCCEEEEEECCCCCCHHHHH
Confidence 556777764 3 567889999999998743
No 371
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=51.69 E-value=5.4 Score=27.70 Aligned_cols=13 Identities=23% Similarity=0.442 Sum_probs=10.9
Q ss_pred eecCCCCCCceEe
Q psy12526 82 AYGQTGEKTNYLL 94 (103)
Q Consensus 82 aYGqtgSGKT~Tm 94 (103)
-+|++|+|||..|
T Consensus 26 i~G~NGsGKStll 38 (198)
T cd03276 26 IVGNNGSGKSAIL 38 (198)
T ss_pred EECCCCCcHHHHH
Confidence 4899999999654
No 372
>KOG0344|consensus
Probab=51.52 E-value=8.1 Score=31.74 Aligned_cols=23 Identities=13% Similarity=0.148 Sum_probs=16.2
Q ss_pred HHHhhCCCcEEEEeecCCCCCCceE
Q psy12526 69 LDNAFQGYNACIFAYGQTGEKTNYL 93 (103)
Q Consensus 69 v~~~~~G~n~ti~aYGqtgSGKT~T 93 (103)
+..++++- -++|.+.||||||+.
T Consensus 167 ipvfl~~r--~~lAcapTGsgKtla 189 (593)
T KOG0344|consen 167 IPVFLEKR--DVLACAPTGSGKTLA 189 (593)
T ss_pred hhhhhccc--ceEEeccCCCcchhh
Confidence 33444444 468999999999863
No 373
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=51.44 E-value=8.2 Score=32.95 Aligned_cols=13 Identities=15% Similarity=0.324 Sum_probs=10.3
Q ss_pred EEeecCCCCCCce
Q psy12526 80 IFAYGQTGEKTNY 92 (103)
Q Consensus 80 i~aYGqtgSGKT~ 92 (103)
.+-.|+||||||.
T Consensus 28 ~lI~G~nGsGKSS 40 (908)
T COG0419 28 FLIVGPNGAGKSS 40 (908)
T ss_pred EEEECCCCCcHHH
Confidence 3458999999964
No 374
>PRK06851 hypothetical protein; Provisional
Probab=51.38 E-value=7.9 Score=29.94 Aligned_cols=28 Identities=21% Similarity=0.388 Sum_probs=21.5
Q ss_pred HHHHhhCCCcEEEEeecCCCCCCceEec
Q psy12526 68 ILDNAFQGYNACIFAYGQTGEKTNYLLN 95 (103)
Q Consensus 68 lv~~~~~G~n~ti~aYGqtgSGKT~Tm~ 95 (103)
+.+.++++.+-.++--|..|+|||++|.
T Consensus 21 ~~~~~~~~~~~~~il~G~pGtGKStl~~ 48 (367)
T PRK06851 21 LYDSIIDGANRIFILKGGPGTGKSTLMK 48 (367)
T ss_pred hhhhhccccceEEEEECCCCCCHHHHHH
Confidence 3455566777777888999999998774
No 375
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=51.37 E-value=10 Score=28.44 Aligned_cols=26 Identities=15% Similarity=0.222 Sum_probs=18.0
Q ss_pred HHHhhCCCcEEEEe-ecCCCCCCceEe
Q psy12526 69 LDNAFQGYNACIFA-YGQTGEKTNYLL 94 (103)
Q Consensus 69 v~~~~~G~n~ti~a-YGqtgSGKT~Tm 94 (103)
.+..|+..++.++. .|..|||||..|
T Consensus 95 ~r~~~~~~~~~~v~l~G~pGsGKTTLl 121 (290)
T PRK10463 95 NRARFAARKQLVLNLVSSPGSGKTTLL 121 (290)
T ss_pred HHHHHHhcCCeEEEEECCCCCCHHHHH
Confidence 44456666655444 599999999865
No 376
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=51.32 E-value=13 Score=30.24 Aligned_cols=37 Identities=24% Similarity=0.325 Sum_probs=22.1
Q ss_pred CCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCce
Q psy12526 54 FASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNY 92 (103)
Q Consensus 54 ~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~ 92 (103)
.-+-.+|.+.+.+-.-.....|+ +|+-.|..|||||.
T Consensus 371 ~f~rpeV~~iL~~~~~~r~~~g~--~Ivl~Gl~GSGKST 407 (568)
T PRK05537 371 WFSFPEVVAELRRTYPPRHKQGF--TVFFTGLSGAGKST 407 (568)
T ss_pred hhcHHHHHHHHHHHhccccCCCe--EEEEECCCCChHHH
Confidence 34455555543333333344555 56678999999985
No 377
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=51.17 E-value=6.2 Score=27.19 Aligned_cols=17 Identities=12% Similarity=0.092 Sum_probs=13.2
Q ss_pred EEEEeecCCCCCCceEe
Q psy12526 78 ACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 78 ~ti~aYGqtgSGKT~Tm 94 (103)
-.+.-.|++|+|||..|
T Consensus 30 ~~~~l~G~Ng~GKStll 46 (202)
T cd03243 30 RLLLITGPNMGGKSTYL 46 (202)
T ss_pred eEEEEECCCCCccHHHH
Confidence 35567899999999754
No 378
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=51.13 E-value=18 Score=27.48 Aligned_cols=37 Identities=14% Similarity=0.209 Sum_probs=24.7
Q ss_pred CCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEec
Q psy12526 55 ASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLN 95 (103)
Q Consensus 55 ~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~ 95 (103)
..|+++ ..-|+-.+++..-+-++-.|.+|+|||..+-
T Consensus 7 vgq~~~----~~al~~~~~~~~~g~vli~G~~G~gKttl~r 43 (337)
T TIGR02030 7 VGQDEM----KLALLLNVIDPKIGGVMVMGDRGTGKSTAVR 43 (337)
T ss_pred ccHHHH----HHHHHHHhcCCCCCeEEEEcCCCCCHHHHHH
Confidence 356544 3445556666555567789999999997543
No 379
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=50.96 E-value=9.4 Score=33.30 Aligned_cols=27 Identities=19% Similarity=0.282 Sum_probs=20.1
Q ss_pred HHHHhhCCCcEEEEeecCCCCCCceEec
Q psy12526 68 ILDNAFQGYNACIFAYGQTGEKTNYLLN 95 (103)
Q Consensus 68 lv~~~~~G~n~ti~aYGqtgSGKT~Tm~ 95 (103)
.|..++.+.+.+ +.-|..|+||||+|-
T Consensus 354 Av~~il~s~~v~-vv~G~AGTGKTT~l~ 380 (988)
T PRK13889 354 ALAHVTDGRDLG-VVVGYAGTGKSAMLG 380 (988)
T ss_pred HHHHHhcCCCeE-EEEeCCCCCHHHHHH
Confidence 456677766644 478999999999763
No 380
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=50.94 E-value=6.6 Score=29.40 Aligned_cols=15 Identities=27% Similarity=0.519 Sum_probs=11.8
Q ss_pred EEee-cCCCCCCceEe
Q psy12526 80 IFAY-GQTGEKTNYLL 94 (103)
Q Consensus 80 i~aY-GqtgSGKT~Tm 94 (103)
||.. |++|+|||.|.
T Consensus 30 i~GllG~NGAGKTTtf 45 (300)
T COG4152 30 IFGLLGPNGAGKTTTF 45 (300)
T ss_pred EEEeecCCCCCccchH
Confidence 4444 99999999985
No 381
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=50.67 E-value=20 Score=25.58 Aligned_cols=21 Identities=19% Similarity=0.213 Sum_probs=13.3
Q ss_pred HHhhCCCcEEEEeecCCCCCCce
Q psy12526 70 DNAFQGYNACIFAYGQTGEKTNY 92 (103)
Q Consensus 70 ~~~~~G~n~ti~aYGqtgSGKT~ 92 (103)
-.+..|. -|+-+|..|+|||.
T Consensus 17 iAAaG~h--~lLl~GppGtGKTm 37 (206)
T PF01078_consen 17 IAAAGGH--HLLLIGPPGTGKTM 37 (206)
T ss_dssp HHHHCC----EEEES-CCCTHHH
T ss_pred HHHcCCC--CeEEECCCCCCHHH
Confidence 3444554 46779999999975
No 382
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=50.67 E-value=5.5 Score=29.41 Aligned_cols=18 Identities=28% Similarity=0.237 Sum_probs=14.4
Q ss_pred EEEEeecCCCCCCceEec
Q psy12526 78 ACIFAYGQTGEKTNYLLN 95 (103)
Q Consensus 78 ~ti~aYGqtgSGKT~Tm~ 95 (103)
-.+.-+|++|+|||.++.
T Consensus 76 ~~i~~~G~~g~GKTtl~~ 93 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLA 93 (270)
T ss_pred CEEEEECCCCCcHHHHHH
Confidence 466778999999998653
No 383
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=50.44 E-value=4.1 Score=30.99 Aligned_cols=12 Identities=25% Similarity=0.476 Sum_probs=10.0
Q ss_pred ecCCCCCCceEe
Q psy12526 83 YGQTGEKTNYLL 94 (103)
Q Consensus 83 YGqtgSGKT~Tm 94 (103)
-|++|||||-|.
T Consensus 37 VGESGsGKS~~~ 48 (316)
T COG0444 37 VGESGSGKSVLA 48 (316)
T ss_pred EcCCCCCHHHHH
Confidence 499999998754
No 384
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=50.36 E-value=3.6 Score=28.47 Aligned_cols=12 Identities=17% Similarity=0.379 Sum_probs=10.1
Q ss_pred eecCCCCCCceE
Q psy12526 82 AYGQTGEKTNYL 93 (103)
Q Consensus 82 aYGqtgSGKT~T 93 (103)
-.|.+|||||.-
T Consensus 34 i~G~nGsGKSTL 45 (216)
T TIGR00960 34 LVGHSGAGKSTF 45 (216)
T ss_pred EECCCCCCHHHH
Confidence 369999999974
No 385
>PRK10869 recombination and repair protein; Provisional
Probab=50.27 E-value=8.9 Score=31.08 Aligned_cols=16 Identities=25% Similarity=0.441 Sum_probs=12.5
Q ss_pred CCCcEEEEeecCCCCCCce
Q psy12526 74 QGYNACIFAYGQTGEKTNY 92 (103)
Q Consensus 74 ~G~n~ti~aYGqtgSGKT~ 92 (103)
.|+|+ -.|.||||||-
T Consensus 22 ~glnv---itGetGaGKS~ 37 (553)
T PRK10869 22 SGMTV---ITGETGAGKSI 37 (553)
T ss_pred CCcEE---EECCCCCChHH
Confidence 57775 37999999974
No 386
>PHA02774 E1; Provisional
Probab=50.26 E-value=13 Score=30.84 Aligned_cols=25 Identities=20% Similarity=0.563 Sum_probs=18.3
Q ss_pred HHHhhCCCc--EEEEeecCCCCCCceE
Q psy12526 69 LDNAFQGYN--ACIFAYGQTGEKTNYL 93 (103)
Q Consensus 69 v~~~~~G~n--~ti~aYGqtgSGKT~T 93 (103)
+..+++|.- .|++-||+.++||||-
T Consensus 424 lk~~l~~~PKknciv~~GPP~TGKS~f 450 (613)
T PHA02774 424 LKDFLKGIPKKNCLVIYGPPDTGKSMF 450 (613)
T ss_pred HHHHHhcCCcccEEEEECCCCCCHHHH
Confidence 444555543 4888999999999973
No 387
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=50.20 E-value=6.9 Score=33.73 Aligned_cols=17 Identities=29% Similarity=0.374 Sum_probs=12.3
Q ss_pred CcEEEEeecCCCCCCceEe
Q psy12526 76 YNACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 76 ~n~ti~aYGqtgSGKT~Tm 94 (103)
+|+-|. =+||+|||||-
T Consensus 75 lNiDI~--METGTGKTy~Y 91 (985)
T COG3587 75 LNIDIL--METGTGKTYTY 91 (985)
T ss_pred ceeeEE--EecCCCceeeH
Confidence 455553 38999999973
No 388
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=50.18 E-value=10 Score=27.62 Aligned_cols=13 Identities=15% Similarity=0.268 Sum_probs=11.1
Q ss_pred ecCCCCCCceEec
Q psy12526 83 YGQTGEKTNYLLN 95 (103)
Q Consensus 83 YGqtgSGKT~Tm~ 95 (103)
.|++|+|||.|..
T Consensus 36 LGPNGAGKTT~Fy 48 (243)
T COG1137 36 LGPNGAGKTTTFY 48 (243)
T ss_pred ECCCCCCceeEEE
Confidence 6999999998753
No 389
>KOG0925|consensus
Probab=49.94 E-value=11 Score=30.88 Aligned_cols=19 Identities=26% Similarity=0.214 Sum_probs=15.6
Q ss_pred CCcEEEEeecCCCCCCceE
Q psy12526 75 GYNACIFAYGQTGEKTNYL 93 (103)
Q Consensus 75 G~n~ti~aYGqtgSGKT~T 93 (103)
..|-+|.--|.||||||.-
T Consensus 60 ~~nQ~~v~vGetgsGKttQ 78 (699)
T KOG0925|consen 60 LNNQIIVLVGETGSGKTTQ 78 (699)
T ss_pred hcCceEEEEecCCCCcccc
Confidence 3477888899999999864
No 390
>PRK13822 conjugal transfer coupling protein TraG; Provisional
Probab=49.87 E-value=11 Score=31.17 Aligned_cols=19 Identities=5% Similarity=0.048 Sum_probs=15.4
Q ss_pred cEEEEeecCCCCCCceEec
Q psy12526 77 NACIFAYGQTGEKTNYLLN 95 (103)
Q Consensus 77 n~ti~aYGqtgSGKT~Tm~ 95 (103)
+.-++.+|.||||||..+.
T Consensus 224 ~~H~Lv~ApTgsGKt~g~V 242 (641)
T PRK13822 224 STHGLVFAGSGGFKTTSVV 242 (641)
T ss_pred CceEEEEeCCCCCccceEe
Confidence 4557899999999998653
No 391
>PLN02200 adenylate kinase family protein
Probab=49.75 E-value=7.9 Score=27.73 Aligned_cols=15 Identities=20% Similarity=0.293 Sum_probs=12.8
Q ss_pred EEEEeecCCCCCCce
Q psy12526 78 ACIFAYGQTGEKTNY 92 (103)
Q Consensus 78 ~ti~aYGqtgSGKT~ 92 (103)
..|+..|..|||||.
T Consensus 44 ~ii~I~G~PGSGKsT 58 (234)
T PLN02200 44 FITFVLGGPGSGKGT 58 (234)
T ss_pred EEEEEECCCCCCHHH
Confidence 457889999999975
No 392
>PRK13946 shikimate kinase; Provisional
Probab=49.56 E-value=8.2 Score=26.24 Aligned_cols=15 Identities=13% Similarity=0.251 Sum_probs=12.8
Q ss_pred EEEeecCCCCCCceE
Q psy12526 79 CIFAYGQTGEKTNYL 93 (103)
Q Consensus 79 ti~aYGqtgSGKT~T 93 (103)
.|+--|..|||||..
T Consensus 12 ~I~l~G~~GsGKsti 26 (184)
T PRK13946 12 TVVLVGLMGAGKSTV 26 (184)
T ss_pred eEEEECCCCCCHHHH
Confidence 588899999999863
No 393
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=49.54 E-value=6.7 Score=29.01 Aligned_cols=18 Identities=22% Similarity=0.237 Sum_probs=13.7
Q ss_pred hCCCcEEEEeecCCCCCCce
Q psy12526 73 FQGYNACIFAYGQTGEKTNY 92 (103)
Q Consensus 73 ~~G~n~ti~aYGqtgSGKT~ 92 (103)
-.|-+=.| +|.+|||||.
T Consensus 55 ~~ge~W~I--~G~NGsGKTT 72 (257)
T COG1119 55 NPGEHWAI--VGPNGAGKTT 72 (257)
T ss_pred cCCCcEEE--ECCCCCCHHH
Confidence 34656555 9999999986
No 394
>KOG0160|consensus
Probab=49.38 E-value=13 Score=31.99 Aligned_cols=24 Identities=21% Similarity=0.260 Sum_probs=20.6
Q ss_pred HhhCCCcEEEEeecCCCCCCceEe
Q psy12526 71 NAFQGYNACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 71 ~~~~G~n~ti~aYGqtgSGKT~Tm 94 (103)
-..++.|-+|..-|.+|+|||-|+
T Consensus 88 m~~~~~~QsIivsGESGAgkT~~a 111 (862)
T KOG0160|consen 88 MTPDGVNQSIIVSGESGAGKTETA 111 (862)
T ss_pred hhhccCCceeeeeCCCCCchhHHH
Confidence 346788999999999999999765
No 395
>PRK14701 reverse gyrase; Provisional
Probab=49.19 E-value=15 Score=33.80 Aligned_cols=24 Identities=13% Similarity=0.102 Sum_probs=18.8
Q ss_pred HHHHHhhCCCcEEEEeecCCCCCCce
Q psy12526 67 DILDNAFQGYNACIFAYGQTGEKTNY 92 (103)
Q Consensus 67 ~lv~~~~~G~n~ti~aYGqtgSGKT~ 92 (103)
..+..+++|.+.. +.++||||||.
T Consensus 86 ~~i~~il~G~d~l--i~APTGsGKTl 109 (1638)
T PRK14701 86 TWAKRILRGKSFS--IVAPTGMGKST 109 (1638)
T ss_pred HHHHHHHcCCCEE--EEEcCCCCHHH
Confidence 4556778888754 67899999996
No 396
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=49.07 E-value=13 Score=29.78 Aligned_cols=19 Identities=26% Similarity=0.384 Sum_probs=15.4
Q ss_pred CCcEEEEeecCCCCCCceE
Q psy12526 75 GYNACIFAYGQTGEKTNYL 93 (103)
Q Consensus 75 G~n~ti~aYGqtgSGKT~T 93 (103)
..+.-|+-+|++|+||++.
T Consensus 225 ~~~~pvlI~GE~GtGK~~l 243 (520)
T PRK10820 225 MLDAPLLITGDTGTGKDLL 243 (520)
T ss_pred CCCCCEEEECCCCccHHHH
Confidence 3566788999999999763
No 397
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=49.03 E-value=10 Score=27.05 Aligned_cols=17 Identities=24% Similarity=0.413 Sum_probs=12.7
Q ss_pred CCCcEEEEeecCCCCCCceE
Q psy12526 74 QGYNACIFAYGQTGEKTNYL 93 (103)
Q Consensus 74 ~G~n~ti~aYGqtgSGKT~T 93 (103)
.|+|+ -.|++|||||..
T Consensus 25 ~~~~~---IvG~NGsGKStl 41 (251)
T cd03273 25 PQFNA---ITGLNGSGKSNI 41 (251)
T ss_pred CCeEE---EECCCCCCHHHH
Confidence 45554 479999999864
No 398
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=49.02 E-value=6.1 Score=29.11 Aligned_cols=16 Identities=13% Similarity=0.002 Sum_probs=12.8
Q ss_pred EEEeecCCCCCCceEe
Q psy12526 79 CIFAYGQTGEKTNYLL 94 (103)
Q Consensus 79 ti~aYGqtgSGKT~Tm 94 (103)
.+.-+|.+|||||..+
T Consensus 113 ~~~i~g~~g~GKttl~ 128 (270)
T TIGR02858 113 NTLIISPPQCGKTTLL 128 (270)
T ss_pred EEEEEcCCCCCHHHHH
Confidence 4556999999998754
No 399
>KOG0735|consensus
Probab=49.00 E-value=8.1 Score=32.99 Aligned_cols=17 Identities=29% Similarity=0.493 Sum_probs=14.3
Q ss_pred cEEEEeecCCCCCCceE
Q psy12526 77 NACIFAYGQTGEKTNYL 93 (103)
Q Consensus 77 n~ti~aYGqtgSGKT~T 93 (103)
..-|+-||..|.||||-
T Consensus 701 ~~giLLyGppGcGKT~l 717 (952)
T KOG0735|consen 701 RTGILLYGPPGCGKTLL 717 (952)
T ss_pred ccceEEECCCCCcHHHH
Confidence 35588999999999984
No 400
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=48.97 E-value=3.9 Score=28.20 Aligned_cols=13 Identities=23% Similarity=0.225 Sum_probs=10.7
Q ss_pred EeecCCCCCCceE
Q psy12526 81 FAYGQTGEKTNYL 93 (103)
Q Consensus 81 ~aYGqtgSGKT~T 93 (103)
.-.|.+|||||..
T Consensus 29 ~i~G~nGsGKSTL 41 (211)
T cd03264 29 GLLGPNGAGKTTL 41 (211)
T ss_pred EEECCCCCCHHHH
Confidence 3479999999974
No 401
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=48.93 E-value=4 Score=30.90 Aligned_cols=12 Identities=17% Similarity=0.365 Sum_probs=10.3
Q ss_pred ecCCCCCCceEe
Q psy12526 83 YGQTGEKTNYLL 94 (103)
Q Consensus 83 YGqtgSGKT~Tm 94 (103)
.|.+|+|||.+|
T Consensus 73 lGpNGaGKSTLl 84 (340)
T PRK13536 73 LGPNGAGKSTIA 84 (340)
T ss_pred ECCCCCCHHHHH
Confidence 599999999754
No 402
>COG5519 Superfamily II helicase and inactivated derivatives [DNA replication, recombination, and repair]
Probab=48.89 E-value=39 Score=27.78 Aligned_cols=40 Identities=23% Similarity=0.290 Sum_probs=27.9
Q ss_pred CCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEec
Q psy12526 55 ASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLN 95 (103)
Q Consensus 55 ~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~ 95 (103)
.--..||..++.|||+-+ .--..-+--||||..|||.||-
T Consensus 167 ~~~~~~y~alaa~llr~i-ga~sf~vhi~~qSS~gKT~~~~ 206 (562)
T COG5519 167 MMRLKVYAALAAPLLRLI-GAESFIVHIYGQSSTGKTTTMN 206 (562)
T ss_pred hhHHHHHHHHHHHHHHHh-CCcceeEeecccCCCCceeeee
Confidence 344568888888887653 2222335569999999999985
No 403
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=48.73 E-value=6.3 Score=27.56 Aligned_cols=13 Identities=23% Similarity=0.296 Sum_probs=10.6
Q ss_pred EeecCCCCCCceE
Q psy12526 81 FAYGQTGEKTNYL 93 (103)
Q Consensus 81 ~aYGqtgSGKT~T 93 (103)
.-.|.+|||||..
T Consensus 35 ~l~G~nGsGKSTL 47 (233)
T cd03258 35 GIIGRSGAGKSTL 47 (233)
T ss_pred EEECCCCCCHHHH
Confidence 3479999999974
No 404
>KOG0951|consensus
Probab=48.72 E-value=43 Score=30.64 Aligned_cols=56 Identities=11% Similarity=0.159 Sum_probs=32.3
Q ss_pred ceEEeceEEecCCCC---CCCCCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCce
Q psy12526 36 KTFAFDHCFYSLDPN---LPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNY 92 (103)
Q Consensus 36 ~~F~fd~vf~s~~~~---~~~~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~ 92 (103)
+.|.-+.=||.+.+. ..+.-.|..-|+.+-.-+-+.++.+ ...++-+|+||+|||=
T Consensus 282 ~pf~~~Ekl~~iselP~Wnq~aF~g~~sLNrIQS~v~daAl~~-~EnmLlCAPTGaGKTN 340 (1674)
T KOG0951|consen 282 FPFHKEEKLVKISELPKWNQPAFFGKQSLNRIQSKVYDAALRG-DENMLLCAPTGAGKTN 340 (1674)
T ss_pred CCCCccceeEeecCCcchhhhhcccchhhhHHHHHHHHHHhcC-cCcEEEeccCCCCchH
Confidence 445445555544311 1122233344666655566666655 4467889999999984
No 405
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=48.70 E-value=13 Score=31.46 Aligned_cols=16 Identities=19% Similarity=0.430 Sum_probs=12.8
Q ss_pred EeecCCCCCCceEecc
Q psy12526 81 FAYGQTGEKTNYLLNG 96 (103)
Q Consensus 81 ~aYGqtgSGKT~Tm~G 96 (103)
+-+|.+|+|||+...+
T Consensus 211 LLvGppGvGKT~lae~ 226 (758)
T PRK11034 211 LLVGESGVGKTAIAEG 226 (758)
T ss_pred EEECCCCCCHHHHHHH
Confidence 3499999999986554
No 406
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=48.66 E-value=6.1 Score=33.26 Aligned_cols=17 Identities=24% Similarity=0.389 Sum_probs=13.8
Q ss_pred EEEEeecCCCCCCceEe
Q psy12526 78 ACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 78 ~ti~aYGqtgSGKT~Tm 94 (103)
...+..|.||||||..|
T Consensus 447 ~~~~i~G~tGsGKS~l~ 463 (800)
T PRK13898 447 GHTLIIGPTGAGKTVLM 463 (800)
T ss_pred CEEEEECCCCCcHHHHH
Confidence 44677999999999865
No 407
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=48.65 E-value=19 Score=28.68 Aligned_cols=17 Identities=12% Similarity=0.128 Sum_probs=13.9
Q ss_pred EEEEeecCCCCCCceEe
Q psy12526 78 ACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 78 ~ti~aYGqtgSGKT~Tm 94 (103)
..++-||+.|+|||.+.
T Consensus 37 ~~~Lf~GPpGtGKTTlA 53 (472)
T PRK14962 37 HAYIFAGPRGTGKTTVA 53 (472)
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45788999999999754
No 408
>KOG0739|consensus
Probab=48.65 E-value=8.4 Score=29.80 Aligned_cols=31 Identities=29% Similarity=0.504 Sum_probs=21.4
Q ss_pred HHHHHHH-HHHhhCCCc---EEEEeecCCCCCCce
Q psy12526 62 DALGRDI-LDNAFQGYN---ACIFAYGQTGEKTNY 92 (103)
Q Consensus 62 ~~~~~~l-v~~~~~G~n---~ti~aYGqtgSGKT~ 92 (103)
+.++.|+ ..++|.|.- ..|+-||+.|+||+|
T Consensus 147 EAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSY 181 (439)
T KOG0739|consen 147 EAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSY 181 (439)
T ss_pred hheeecccchhhhcCCCCcceeEEEeCCCCCcHHH
Confidence 3333443 345666654 568999999999998
No 409
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=48.61 E-value=13 Score=30.00 Aligned_cols=20 Identities=15% Similarity=0.390 Sum_probs=16.3
Q ss_pred CCCcEEEEeecCCCCCCceE
Q psy12526 74 QGYNACIFAYGQTGEKTNYL 93 (103)
Q Consensus 74 ~G~n~ti~aYGqtgSGKT~T 93 (103)
...+..|+-+|++|+||+..
T Consensus 232 A~~~~pVLI~GE~GTGKe~l 251 (526)
T TIGR02329 232 ARSDATVLILGESGTGKELV 251 (526)
T ss_pred hCCCCcEEEECCCCcCHHHH
Confidence 45577899999999999753
No 410
>TIGR03743 SXT_TraD conjugative coupling factor TraD, SXT/TOL subfamily. Members of this protein family are the putative conjugative coupling factor, TraD (or TraG), rather distantly related to the well-characterized TraD of the F plasmid. Members are associated with conjugative-transposon-like mobile genetic elements of the class that includes SXT, an antibiotic resistance transfer element in some Vibrio cholerae strains.
Probab=48.58 E-value=5.9 Score=32.74 Aligned_cols=18 Identities=22% Similarity=0.239 Sum_probs=14.0
Q ss_pred cEEEEeecCCCCCCceEe
Q psy12526 77 NACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 77 n~ti~aYGqtgSGKT~Tm 94 (103)
+.=++..|.||+|||..+
T Consensus 176 ~~H~lv~G~TGsGKT~l~ 193 (634)
T TIGR03743 176 VGHTLVLGTTGVGKTRLA 193 (634)
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 344567999999999765
No 411
>PRK00254 ski2-like helicase; Provisional
Probab=48.55 E-value=10 Score=31.44 Aligned_cols=20 Identities=15% Similarity=0.125 Sum_probs=15.3
Q ss_pred hhCCCcEEEEeecCCCCCCceE
Q psy12526 72 AFQGYNACIFAYGQTGEKTNYL 93 (103)
Q Consensus 72 ~~~G~n~ti~aYGqtgSGKT~T 93 (103)
+++|-|. +...+||||||..
T Consensus 36 ~~~g~nv--lv~apTGsGKT~~ 55 (720)
T PRK00254 36 VLEGKNL--VLAIPTASGKTLV 55 (720)
T ss_pred HhCCCcE--EEECCCCcHHHHH
Confidence 4678775 4567999999964
No 412
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=48.49 E-value=6.4 Score=27.31 Aligned_cols=13 Identities=23% Similarity=0.230 Sum_probs=10.4
Q ss_pred EeecCCCCCCceE
Q psy12526 81 FAYGQTGEKTNYL 93 (103)
Q Consensus 81 ~aYGqtgSGKT~T 93 (103)
.--|.+|||||..
T Consensus 34 ~i~G~nGsGKSTL 46 (220)
T cd03293 34 ALVGPSGCGKSTL 46 (220)
T ss_pred EEECCCCCCHHHH
Confidence 3469999999873
No 413
>TIGR00609 recB exodeoxyribonuclease V, beta subunit. All proteins in this family for which functions are known are DNA-DNA helicases that are used as part of an exonuclease-helicase complex (made up of RecBCD homologs) that function to generate substrates for the initiation of recombination and recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=48.35 E-value=3.9 Score=35.70 Aligned_cols=16 Identities=6% Similarity=0.233 Sum_probs=12.1
Q ss_pred EeecCCCCCCceEecc
Q psy12526 81 FAYGQTGEKTNYLLNG 96 (103)
Q Consensus 81 ~aYGqtgSGKT~Tm~G 96 (103)
+-=..-|+||||||..
T Consensus 13 lieAsAGtGKT~ti~~ 28 (1087)
T TIGR00609 13 LIEASAGTGKTFTIAQ 28 (1087)
T ss_pred EEEECCCCCHHHHHHH
Confidence 3445689999999863
No 414
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=48.32 E-value=14 Score=30.55 Aligned_cols=18 Identities=11% Similarity=0.130 Sum_probs=14.6
Q ss_pred EEEEeecCCCCCCceEec
Q psy12526 78 ACIFAYGQTGEKTNYLLN 95 (103)
Q Consensus 78 ~ti~aYGqtgSGKT~Tm~ 95 (103)
.-++..|.||||||..+.
T Consensus 159 ~hvLviapTgSGKg~g~V 176 (606)
T PRK13897 159 QHALLFAPTGSGKGVGFV 176 (606)
T ss_pred ceEEEEcCCCCCcceEEe
Confidence 347789999999998653
No 415
>PRK13850 type IV secretion system protein VirD4; Provisional
Probab=48.28 E-value=12 Score=31.16 Aligned_cols=21 Identities=10% Similarity=-0.027 Sum_probs=16.3
Q ss_pred CCcEEEEeecCCCCCCceEec
Q psy12526 75 GYNACIFAYGQTGEKTNYLLN 95 (103)
Q Consensus 75 G~n~ti~aYGqtgSGKT~Tm~ 95 (103)
+-+.-++..|.||||||..+.
T Consensus 137 ~~~~hvlviApTgSGKgvg~V 157 (670)
T PRK13850 137 GEQPHSLVVAPTRAGKGVGVV 157 (670)
T ss_pred CCCceEEEEecCCCCceeeeh
Confidence 334467889999999998764
No 416
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=48.26 E-value=23 Score=27.05 Aligned_cols=27 Identities=22% Similarity=0.310 Sum_probs=19.0
Q ss_pred HHHHHhhCC-C--cEEEEeecCCCCCCceE
Q psy12526 67 DILDNAFQG-Y--NACIFAYGQTGEKTNYL 93 (103)
Q Consensus 67 ~lv~~~~~G-~--n~ti~aYGqtgSGKT~T 93 (103)
+-++.++.| + ...+..||..|+|||.-
T Consensus 110 ~~LD~lL~GG~~~g~i~~i~G~~g~GKT~l 139 (342)
T PLN03186 110 RELDKILEGGIETGSITEIYGEFRTGKTQL 139 (342)
T ss_pred HHHHHhhcCCCcCceEEEEECCCCCCccHH
Confidence 446676664 3 34467899999999863
No 417
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=48.01 E-value=15 Score=29.06 Aligned_cols=27 Identities=30% Similarity=0.434 Sum_probs=20.7
Q ss_pred HHHHHHhhCC-C--cEEEEeecCCCCCCce
Q psy12526 66 RDILDNAFQG-Y--NACIFAYGQTGEKTNY 92 (103)
Q Consensus 66 ~~lv~~~~~G-~--n~ti~aYGqtgSGKT~ 92 (103)
-+-++.++.| + ..+++-.|++|+|||.
T Consensus 249 i~~lD~~lgGG~~~gs~~li~G~~G~GKt~ 278 (484)
T TIGR02655 249 VVRLDEMCGGGFFKDSIILATGATGTGKTL 278 (484)
T ss_pred hHhHHHHhcCCccCCcEEEEECCCCCCHHH
Confidence 3556777765 3 5678899999999985
No 418
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=48.00 E-value=6.6 Score=28.93 Aligned_cols=13 Identities=15% Similarity=0.266 Sum_probs=10.8
Q ss_pred eecCCCCCCceEe
Q psy12526 82 AYGQTGEKTNYLL 94 (103)
Q Consensus 82 aYGqtgSGKT~Tm 94 (103)
-.|.+|||||..|
T Consensus 24 l~G~NGaGKSTLl 36 (302)
T TIGR01188 24 FLGPNGAGKTTTI 36 (302)
T ss_pred EECCCCCCHHHHH
Confidence 4699999999854
No 419
>KOG0328|consensus
Probab=47.87 E-value=18 Score=27.70 Aligned_cols=25 Identities=16% Similarity=0.304 Sum_probs=19.4
Q ss_pred HHHHhhCCCcEEEEeecCCCCCCceEe
Q psy12526 68 ILDNAFQGYNACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 68 lv~~~~~G~n~ti~aYGqtgSGKT~Tm 94 (103)
-+..++.|.++ .|-.|+|+|||-|.
T Consensus 57 Ai~~IlkGrdV--iaQaqSGTGKTa~~ 81 (400)
T KOG0328|consen 57 AIPQILKGRDV--IAQAQSGTGKTATF 81 (400)
T ss_pred hhhhhhcccce--EEEecCCCCceEEE
Confidence 34567889885 57789999998765
No 420
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=47.67 E-value=14 Score=26.29 Aligned_cols=22 Identities=9% Similarity=-0.034 Sum_probs=14.0
Q ss_pred CCCcEEEEeecCCCCCCceEecc
Q psy12526 74 QGYNACIFAYGQTGEKTNYLLNG 96 (103)
Q Consensus 74 ~G~n~ti~aYGqtgSGKT~Tm~G 96 (103)
...+++|+|- ..|.|||.++.+
T Consensus 23 ~~~~g~lL~d-e~GlGKT~~~i~ 44 (299)
T PF00176_consen 23 SPPRGGLLAD-EMGLGKTITAIA 44 (299)
T ss_dssp TTT-EEEE----TTSSHHHHHHH
T ss_pred cCCCCEEEEE-CCCCCchhhhhh
Confidence 5677777765 899999987653
No 421
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=47.38 E-value=7.1 Score=30.01 Aligned_cols=16 Identities=19% Similarity=0.590 Sum_probs=13.7
Q ss_pred EEEeecCCCCCCceEe
Q psy12526 79 CIFAYGQTGEKTNYLL 94 (103)
Q Consensus 79 ti~aYGqtgSGKT~Tm 94 (103)
-|.-||.-|.|||+-|
T Consensus 64 GlYl~G~vG~GKT~Lm 79 (362)
T PF03969_consen 64 GLYLWGPVGRGKTMLM 79 (362)
T ss_pred eEEEECCCCCchhHHH
Confidence 4678999999999866
No 422
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=47.29 E-value=6.9 Score=26.73 Aligned_cols=13 Identities=23% Similarity=0.381 Sum_probs=10.5
Q ss_pred EeecCCCCCCceE
Q psy12526 81 FAYGQTGEKTNYL 93 (103)
Q Consensus 81 ~aYGqtgSGKT~T 93 (103)
--.|.+|||||..
T Consensus 28 ~i~G~nGsGKSTL 40 (206)
T TIGR03608 28 AIIGESGSGKSTL 40 (206)
T ss_pred EEECCCCCCHHHH
Confidence 3479999999973
No 423
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=47.27 E-value=6.9 Score=27.16 Aligned_cols=13 Identities=15% Similarity=0.089 Sum_probs=10.6
Q ss_pred EeecCCCCCCceE
Q psy12526 81 FAYGQTGEKTNYL 93 (103)
Q Consensus 81 ~aYGqtgSGKT~T 93 (103)
.-.|.+|||||..
T Consensus 30 ~i~G~nGsGKSTL 42 (220)
T cd03265 30 GLLGPNGAGKTTT 42 (220)
T ss_pred EEECCCCCCHHHH
Confidence 3479999999973
No 424
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=47.14 E-value=25 Score=28.36 Aligned_cols=22 Identities=27% Similarity=0.335 Sum_probs=16.1
Q ss_pred HHhhCCCcEEEEeecCCCCCCceE
Q psy12526 70 DNAFQGYNACIFAYGQTGEKTNYL 93 (103)
Q Consensus 70 ~~~~~G~n~ti~aYGqtgSGKT~T 93 (103)
-.+.-|.| ++-||.-|||||..
T Consensus 193 iAAAGgHn--Ll~~GpPGtGKTml 214 (490)
T COG0606 193 IAAAGGHN--LLLVGPPGTGKTML 214 (490)
T ss_pred HHHhcCCc--EEEecCCCCchHHh
Confidence 33445666 67799999999764
No 425
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=47.13 E-value=7.4 Score=28.39 Aligned_cols=17 Identities=24% Similarity=0.565 Sum_probs=12.5
Q ss_pred CcEEEEeecCCCCCCceEe
Q psy12526 76 YNACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 76 ~n~ti~aYGqtgSGKT~Tm 94 (103)
++.+| -|.+|||||..+
T Consensus 14 fr~vi--IG~sGSGKT~li 30 (241)
T PF04665_consen 14 FRMVI--IGKSGSGKTTLI 30 (241)
T ss_pred ceEEE--ECCCCCCHHHHH
Confidence 45554 799999998643
No 426
>PRK07667 uridine kinase; Provisional
Probab=47.05 E-value=8.9 Score=26.36 Aligned_cols=18 Identities=6% Similarity=-0.145 Sum_probs=13.4
Q ss_pred CCcEEEEeecCCCCCCce
Q psy12526 75 GYNACIFAYGQTGEKTNY 92 (103)
Q Consensus 75 G~n~ti~aYGqtgSGKT~ 92 (103)
+--.-|.-.|..|||||+
T Consensus 15 ~~~~iIgI~G~~gsGKSt 32 (193)
T PRK07667 15 ENRFILGIDGLSRSGKTT 32 (193)
T ss_pred CCCEEEEEECCCCCCHHH
Confidence 333455667999999997
No 427
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=46.91 E-value=7 Score=28.79 Aligned_cols=13 Identities=15% Similarity=0.307 Sum_probs=10.7
Q ss_pred eecCCCCCCceEe
Q psy12526 82 AYGQTGEKTNYLL 94 (103)
Q Consensus 82 aYGqtgSGKT~Tm 94 (103)
-.|.+|||||..|
T Consensus 35 l~G~NGaGKSTLl 47 (303)
T TIGR01288 35 LLGPNGAGKSTIA 47 (303)
T ss_pred EECCCCCCHHHHH
Confidence 4699999999754
No 428
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=46.91 E-value=4.4 Score=28.07 Aligned_cols=12 Identities=17% Similarity=0.279 Sum_probs=10.1
Q ss_pred eecCCCCCCceE
Q psy12526 82 AYGQTGEKTNYL 93 (103)
Q Consensus 82 aYGqtgSGKT~T 93 (103)
-.|.+|||||..
T Consensus 33 i~G~nGsGKSTL 44 (220)
T cd03263 33 LLGHNGAGKTTT 44 (220)
T ss_pred EECCCCCCHHHH
Confidence 469999999973
No 429
>KOG0348|consensus
Probab=46.83 E-value=15 Score=30.35 Aligned_cols=23 Identities=22% Similarity=0.288 Sum_probs=16.7
Q ss_pred HHHHhhCCCcEEEEeecCCCCCCce
Q psy12526 68 ILDNAFQGYNACIFAYGQTGEKTNY 92 (103)
Q Consensus 68 lv~~~~~G~n~ti~aYGqtgSGKT~ 92 (103)
.|..+|+|-.+- .-.|||||||-
T Consensus 167 ~IP~lL~grD~l--V~aQTGSGKTL 189 (708)
T KOG0348|consen 167 AIPVLLEGRDAL--VRAQTGSGKTL 189 (708)
T ss_pred chhhhhcCcceE--EEcCCCCcccH
Confidence 344567788765 46799999984
No 430
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=46.75 E-value=4.4 Score=28.06 Aligned_cols=13 Identities=31% Similarity=0.498 Sum_probs=10.6
Q ss_pred eecCCCCCCceEe
Q psy12526 82 AYGQTGEKTNYLL 94 (103)
Q Consensus 82 aYGqtgSGKT~Tm 94 (103)
-.|.+|||||..|
T Consensus 35 i~G~nGsGKSTLl 47 (220)
T cd03245 35 IIGRVGSGKSTLL 47 (220)
T ss_pred EECCCCCCHHHHH
Confidence 4699999999743
No 431
>KOG0652|consensus
Probab=46.59 E-value=10 Score=28.85 Aligned_cols=14 Identities=21% Similarity=0.541 Sum_probs=11.8
Q ss_pred EEEeecCCCCCCce
Q psy12526 79 CIFAYGQTGEKTNY 92 (103)
Q Consensus 79 ti~aYGqtgSGKT~ 92 (103)
-++-||+.|+|||-
T Consensus 207 GvLmYGPPGTGKTl 220 (424)
T KOG0652|consen 207 GVLMYGPPGTGKTL 220 (424)
T ss_pred ceEeeCCCCCcHHH
Confidence 36889999999973
No 432
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=46.56 E-value=11 Score=30.26 Aligned_cols=18 Identities=17% Similarity=0.350 Sum_probs=15.9
Q ss_pred hCCCcEEEEeecCCCCCC
Q psy12526 73 FQGYNACIFAYGQTGEKT 90 (103)
Q Consensus 73 ~~G~n~ti~aYGqtgSGK 90 (103)
+...++.|+-.|+||+||
T Consensus 160 vA~s~a~VLI~GESGtGK 177 (464)
T COG2204 160 VAPSDASVLITGESGTGK 177 (464)
T ss_pred HhCCCCCEEEECCCCCcH
Confidence 456789999999999999
No 433
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=46.50 E-value=7.2 Score=26.75 Aligned_cols=13 Identities=23% Similarity=0.294 Sum_probs=10.5
Q ss_pred EeecCCCCCCceE
Q psy12526 81 FAYGQTGEKTNYL 93 (103)
Q Consensus 81 ~aYGqtgSGKT~T 93 (103)
.-.|.+|||||..
T Consensus 30 ~i~G~nGsGKSTL 42 (205)
T cd03226 30 ALTGKNGAGKTTL 42 (205)
T ss_pred EEECCCCCCHHHH
Confidence 3479999999974
No 434
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=46.39 E-value=4.5 Score=27.87 Aligned_cols=12 Identities=25% Similarity=0.324 Sum_probs=10.0
Q ss_pred eecCCCCCCceE
Q psy12526 82 AYGQTGEKTNYL 93 (103)
Q Consensus 82 aYGqtgSGKT~T 93 (103)
--|.+|||||..
T Consensus 32 l~G~nGsGKSTL 43 (204)
T PRK13538 32 IEGPNGAGKTSL 43 (204)
T ss_pred EECCCCCCHHHH
Confidence 469999999873
No 435
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=46.34 E-value=4.5 Score=28.20 Aligned_cols=13 Identities=23% Similarity=0.371 Sum_probs=10.4
Q ss_pred EeecCCCCCCceE
Q psy12526 81 FAYGQTGEKTNYL 93 (103)
Q Consensus 81 ~aYGqtgSGKT~T 93 (103)
.--|.+|||||..
T Consensus 40 ~i~G~nGsGKSTL 52 (228)
T PRK10584 40 ALIGESGSGKSTL 52 (228)
T ss_pred EEECCCCCCHHHH
Confidence 3469999999974
No 436
>PLN02748 tRNA dimethylallyltransferase
Probab=46.34 E-value=9.9 Score=30.38 Aligned_cols=15 Identities=20% Similarity=0.361 Sum_probs=12.4
Q ss_pred EEEEeecCCCCCCce
Q psy12526 78 ACIFAYGQTGEKTNY 92 (103)
Q Consensus 78 ~ti~aYGqtgSGKT~ 92 (103)
-.|+-.|.||||||.
T Consensus 23 ~~i~i~GptgsGKs~ 37 (468)
T PLN02748 23 KVVVVMGPTGSGKSK 37 (468)
T ss_pred CEEEEECCCCCCHHH
Confidence 356779999999985
No 437
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=46.28 E-value=8.6 Score=30.61 Aligned_cols=19 Identities=16% Similarity=0.340 Sum_probs=15.5
Q ss_pred CCcEEEEeecCCCCCCceE
Q psy12526 75 GYNACIFAYGQTGEKTNYL 93 (103)
Q Consensus 75 G~n~ti~aYGqtgSGKT~T 93 (103)
..+..|+-+|++|+||++.
T Consensus 208 ~~~~pVlI~Ge~GtGK~~~ 226 (509)
T PRK05022 208 ASDLNVLILGETGVGKELV 226 (509)
T ss_pred CCCCcEEEECCCCccHHHH
Confidence 4567788999999999763
No 438
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=46.18 E-value=6.7 Score=26.20 Aligned_cols=17 Identities=18% Similarity=0.147 Sum_probs=13.6
Q ss_pred EEEEeecCCCCCCceEe
Q psy12526 78 ACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 78 ~ti~aYGqtgSGKT~Tm 94 (103)
..|.-.|.+|+|||..+
T Consensus 19 ~~i~ivG~~~~GKStli 35 (179)
T TIGR03598 19 PEIAFAGRSNVGKSSLI 35 (179)
T ss_pred CEEEEEcCCCCCHHHHH
Confidence 45677999999998754
No 439
>PRK02362 ski2-like helicase; Provisional
Probab=46.16 E-value=17 Score=30.34 Aligned_cols=20 Identities=20% Similarity=0.199 Sum_probs=14.9
Q ss_pred hhCCCcEEEEeecCCCCCCceE
Q psy12526 72 AFQGYNACIFAYGQTGEKTNYL 93 (103)
Q Consensus 72 ~~~G~n~ti~aYGqtgSGKT~T 93 (103)
+++|-|+ +.-.+||||||..
T Consensus 36 ~~~g~nv--lv~APTGSGKTli 55 (737)
T PRK02362 36 LLDGKNL--LAAIPTASGKTLI 55 (737)
T ss_pred HhCCCcE--EEECCCcchHHHH
Confidence 4577774 4578999999864
No 440
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=46.08 E-value=25 Score=23.72 Aligned_cols=22 Identities=18% Similarity=0.215 Sum_probs=16.1
Q ss_pred hhCC-CcEEEEeecCCCCCCceE
Q psy12526 72 AFQG-YNACIFAYGQTGEKTNYL 93 (103)
Q Consensus 72 ~~~G-~n~ti~aYGqtgSGKT~T 93 (103)
+..| ..-+++-||+.|.|||..
T Consensus 8 i~~~~~~~~~L~~G~~G~gkt~~ 30 (188)
T TIGR00678 8 LEKGRLAHAYLFAGPEGVGKELL 30 (188)
T ss_pred HHcCCCCeEEEEECCCCCCHHHH
Confidence 3344 445777899999999864
No 441
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=46.06 E-value=11 Score=27.69 Aligned_cols=12 Identities=25% Similarity=0.457 Sum_probs=10.0
Q ss_pred ecCCCCCCceEe
Q psy12526 83 YGQTGEKTNYLL 94 (103)
Q Consensus 83 YGqtgSGKT~Tm 94 (103)
-|++|+|||...
T Consensus 36 IGPNGAGKTTlf 47 (250)
T COG0411 36 IGPNGAGKTTLF 47 (250)
T ss_pred ECCCCCCceeee
Confidence 499999999753
No 442
>COG1783 XtmB Phage terminase large subunit [General function prediction only]
Probab=46.00 E-value=9.4 Score=30.01 Aligned_cols=16 Identities=25% Similarity=0.426 Sum_probs=14.0
Q ss_pred EEEeecCCCCCCceEe
Q psy12526 79 CIFAYGQTGEKTNYLL 94 (103)
Q Consensus 79 ti~aYGqtgSGKT~Tm 94 (103)
..+++|+.||+|||+.
T Consensus 26 ~~i~~G~rGS~KSy~~ 41 (414)
T COG1783 26 YFIAKGGRGSSKSYAT 41 (414)
T ss_pred EEEEEccCCCchhHHH
Confidence 4889999999999964
No 443
>cd01919 PEPCK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).
Probab=46.00 E-value=13 Score=30.04 Aligned_cols=18 Identities=17% Similarity=0.300 Sum_probs=14.6
Q ss_pred EEEeecCCCCCCceEecc
Q psy12526 79 CIFAYGQTGEKTNYLLNG 96 (103)
Q Consensus 79 ti~aYGqtgSGKT~Tm~G 96 (103)
++..+|.+|+|||.+-+.
T Consensus 219 ~~~~~GlSGtGKTTLa~~ 236 (515)
T cd01919 219 VLVFFGLSGTGKTTLSMD 236 (515)
T ss_pred EEEEEecccCCCcccccC
Confidence 677899999999976543
No 444
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=45.87 E-value=9.1 Score=30.45 Aligned_cols=15 Identities=27% Similarity=0.286 Sum_probs=13.3
Q ss_pred EEEEeecCCCCCCce
Q psy12526 78 ACIFAYGQTGEKTNY 92 (103)
Q Consensus 78 ~ti~aYGqtgSGKT~ 92 (103)
..|+-+|++|+|||.
T Consensus 51 ~~ILliGp~G~GKT~ 65 (443)
T PRK05201 51 KNILMIGPTGVGKTE 65 (443)
T ss_pred ceEEEECCCCCCHHH
Confidence 568899999999985
No 445
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=45.85 E-value=6.6 Score=27.69 Aligned_cols=19 Identities=11% Similarity=0.107 Sum_probs=16.3
Q ss_pred EEEEeecCCCCCCceEecc
Q psy12526 78 ACIFAYGQTGEKTNYLLNG 96 (103)
Q Consensus 78 ~ti~aYGqtgSGKT~Tm~G 96 (103)
+.|..|+-+|.|||+..+|
T Consensus 23 g~v~v~~g~GkGKtt~a~g 41 (191)
T PRK05986 23 GLLIVHTGNGKGKSTAAFG 41 (191)
T ss_pred CeEEEECCCCCChHHHHHH
Confidence 5788899999999997765
No 446
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=45.53 E-value=7.4 Score=28.26 Aligned_cols=27 Identities=19% Similarity=0.251 Sum_probs=18.8
Q ss_pred HHHHHHhhCC-C--cEEEEeecCCCCCCce
Q psy12526 66 RDILDNAFQG-Y--NACIFAYGQTGEKTNY 92 (103)
Q Consensus 66 ~~lv~~~~~G-~--n~ti~aYGqtgSGKT~ 92 (103)
-+-++.+|.| . ....=-||+.|||||.
T Consensus 24 ~~~lD~~L~GGi~~g~itEi~G~~gsGKTq 53 (256)
T PF08423_consen 24 CKSLDELLGGGIPTGSITEIVGESGSGKTQ 53 (256)
T ss_dssp SHHHHHHTTSSEETTSEEEEEESTTSSHHH
T ss_pred CHHHHHhhCCCCCCCcEEEEEEecccccch
Confidence 3567888875 2 2233468999999985
No 447
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=45.48 E-value=7.6 Score=28.63 Aligned_cols=13 Identities=15% Similarity=0.276 Sum_probs=10.8
Q ss_pred eecCCCCCCceEe
Q psy12526 82 AYGQTGEKTNYLL 94 (103)
Q Consensus 82 aYGqtgSGKT~Tm 94 (103)
-.|++|+|||..|
T Consensus 33 l~G~NGaGKTTLl 45 (301)
T TIGR03522 33 FLGPNGAGKSTTM 45 (301)
T ss_pred EECCCCCCHHHHH
Confidence 4699999999854
No 448
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=45.45 E-value=4.8 Score=27.84 Aligned_cols=12 Identities=25% Similarity=0.340 Sum_probs=10.0
Q ss_pred eecCCCCCCceE
Q psy12526 82 AYGQTGEKTNYL 93 (103)
Q Consensus 82 aYGqtgSGKT~T 93 (103)
--|.+|||||..
T Consensus 33 i~G~nGsGKSTL 44 (207)
T PRK13539 33 LTGPNGSGKTTL 44 (207)
T ss_pred EECCCCCCHHHH
Confidence 369999999974
No 449
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=45.38 E-value=4.8 Score=28.32 Aligned_cols=12 Identities=25% Similarity=0.398 Sum_probs=10.0
Q ss_pred eecCCCCCCceE
Q psy12526 82 AYGQTGEKTNYL 93 (103)
Q Consensus 82 aYGqtgSGKT~T 93 (103)
--|.+|||||.-
T Consensus 32 i~G~nGsGKSTL 43 (236)
T TIGR03864 32 LLGPNGAGKSTL 43 (236)
T ss_pred EECCCCCCHHHH
Confidence 369999999873
No 450
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=45.32 E-value=7.7 Score=26.11 Aligned_cols=12 Identities=25% Similarity=0.432 Sum_probs=10.1
Q ss_pred eecCCCCCCceE
Q psy12526 82 AYGQTGEKTNYL 93 (103)
Q Consensus 82 aYGqtgSGKT~T 93 (103)
--|++|||||.-
T Consensus 31 i~G~nGsGKSTL 42 (178)
T cd03229 31 LLGPSGSGKSTL 42 (178)
T ss_pred EECCCCCCHHHH
Confidence 369999999974
No 451
>PLN02840 tRNA dimethylallyltransferase
Probab=45.31 E-value=11 Score=29.82 Aligned_cols=15 Identities=33% Similarity=0.423 Sum_probs=12.4
Q ss_pred EEEeecCCCCCCceE
Q psy12526 79 CIFAYGQTGEKTNYL 93 (103)
Q Consensus 79 ti~aYGqtgSGKT~T 93 (103)
.|+-.|.||||||..
T Consensus 23 vi~I~GptgsGKTtl 37 (421)
T PLN02840 23 VIVISGPTGAGKSRL 37 (421)
T ss_pred EEEEECCCCCCHHHH
Confidence 466789999999864
No 452
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=45.23 E-value=7.8 Score=29.50 Aligned_cols=12 Identities=25% Similarity=0.415 Sum_probs=10.4
Q ss_pred ecCCCCCCceEe
Q psy12526 83 YGQTGEKTNYLL 94 (103)
Q Consensus 83 YGqtgSGKT~Tm 94 (103)
.|.+|||||..|
T Consensus 38 lGpsGsGKSTLL 49 (351)
T PRK11432 38 LGPSGCGKTTVL 49 (351)
T ss_pred ECCCCCcHHHHH
Confidence 699999999854
No 453
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=45.22 E-value=15 Score=24.75 Aligned_cols=18 Identities=17% Similarity=0.169 Sum_probs=14.3
Q ss_pred CcEEEEeecCCCCCCceE
Q psy12526 76 YNACIFAYGQTGEKTNYL 93 (103)
Q Consensus 76 ~n~ti~aYGqtgSGKT~T 93 (103)
++..|+-.|.+|+|||.+
T Consensus 13 ~g~gvLi~G~sG~GKStl 30 (149)
T cd01918 13 GGIGVLITGPSGIGKSEL 30 (149)
T ss_pred CCEEEEEEcCCCCCHHHH
Confidence 456678899999999843
No 454
>PRK10263 DNA translocase FtsK; Provisional
Probab=45.20 E-value=7.3 Score=34.96 Aligned_cols=16 Identities=19% Similarity=0.283 Sum_probs=13.2
Q ss_pred EEEeecCCCCCCceEe
Q psy12526 79 CIFAYGQTGEKTNYLL 94 (103)
Q Consensus 79 ti~aYGqtgSGKT~Tm 94 (103)
-++..|.||||||..|
T Consensus 1012 HLLIAGaTGSGKSv~L 1027 (1355)
T PRK10263 1012 HLLVAGTTGSGKSVGV 1027 (1355)
T ss_pred cEEEecCCCCCHHHHH
Confidence 4678999999999754
No 455
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=45.13 E-value=7.7 Score=29.53 Aligned_cols=13 Identities=31% Similarity=0.409 Sum_probs=10.9
Q ss_pred eecCCCCCCceEe
Q psy12526 82 AYGQTGEKTNYLL 94 (103)
Q Consensus 82 aYGqtgSGKT~Tm 94 (103)
-.|++|||||..|
T Consensus 35 l~GpsGsGKSTLL 47 (353)
T TIGR03265 35 LLGPSGCGKTTLL 47 (353)
T ss_pred EECCCCCCHHHHH
Confidence 4799999999854
No 456
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=45.09 E-value=7.8 Score=26.25 Aligned_cols=12 Identities=25% Similarity=0.398 Sum_probs=10.1
Q ss_pred eecCCCCCCceE
Q psy12526 82 AYGQTGEKTNYL 93 (103)
Q Consensus 82 aYGqtgSGKT~T 93 (103)
--|.+|||||..
T Consensus 23 i~G~nGsGKSTL 34 (190)
T TIGR01166 23 LLGANGAGKSTL 34 (190)
T ss_pred EECCCCCCHHHH
Confidence 469999999974
No 457
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=45.02 E-value=12 Score=25.76 Aligned_cols=14 Identities=14% Similarity=0.264 Sum_probs=11.2
Q ss_pred EEEeecCCCCCCce
Q psy12526 79 CIFAYGQTGEKTNY 92 (103)
Q Consensus 79 ti~aYGqtgSGKT~ 92 (103)
.+.-.|++|||||.
T Consensus 25 ~~~i~G~nGsGKST 38 (214)
T cd03297 25 VTGIFGASGAGKST 38 (214)
T ss_pred eEEEECCCCCCHHH
Confidence 34557999999986
No 458
>KOG1514|consensus
Probab=44.96 E-value=34 Score=29.06 Aligned_cols=30 Identities=20% Similarity=0.439 Sum_probs=22.2
Q ss_pred HHHHHhhC--CCcEEEEeecCCCCCCceEecc
Q psy12526 67 DILDNAFQ--GYNACIFAYGQTGEKTNYLLNG 96 (103)
Q Consensus 67 ~lv~~~~~--G~n~ti~aYGqtgSGKT~Tm~G 96 (103)
..++.++. |-.+|+..-|.-|+|||.|+..
T Consensus 410 ~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~ 441 (767)
T KOG1514|consen 410 DFLRSFISDQGLGSCMYISGVPGTGKTATVLE 441 (767)
T ss_pred HHHHhhcCCCCCceeEEEecCCCCCceehHHH
Confidence 44444443 6667888889999999999753
No 459
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=44.89 E-value=13 Score=25.96 Aligned_cols=14 Identities=14% Similarity=0.157 Sum_probs=11.1
Q ss_pred EEeecCCCCCCceE
Q psy12526 80 IFAYGQTGEKTNYL 93 (103)
Q Consensus 80 i~aYGqtgSGKT~T 93 (103)
+.-.|.+|||||.-
T Consensus 29 ~~l~G~nGsGKSTL 42 (232)
T cd03218 29 VGLLGPNGAGKTTT 42 (232)
T ss_pred EEEECCCCCCHHHH
Confidence 34579999999974
No 460
>KOG1970|consensus
Probab=44.83 E-value=30 Score=28.69 Aligned_cols=44 Identities=9% Similarity=0.083 Sum_probs=26.0
Q ss_pred CCCCCHHHHHHHHHHHHHH------HhhCCCc-EEEEeecCCCCCCceEec
Q psy12526 52 PNFASQEKVFDALGRDILD------NAFQGYN-ACIFAYGQTGEKTNYLLN 95 (103)
Q Consensus 52 ~~~~~q~~v~~~~~~~lv~------~~~~G~n-~ti~aYGqtgSGKT~Tm~ 95 (103)
|....+-.|+..-+..+=+ .+..+.- -.++--|++|+|||.|+.
T Consensus 78 P~t~eeLAVHkkKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvk 128 (634)
T KOG1970|consen 78 PRTLEELAVHKKKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVK 128 (634)
T ss_pred cccHHHHhhhHHhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHH
Confidence 4555566677655433222 2233443 245667999999999863
No 461
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=44.68 E-value=7.9 Score=27.10 Aligned_cols=12 Identities=25% Similarity=0.407 Sum_probs=10.1
Q ss_pred eecCCCCCCceE
Q psy12526 82 AYGQTGEKTNYL 93 (103)
Q Consensus 82 aYGqtgSGKT~T 93 (103)
-.|.+|||||..
T Consensus 32 i~G~nGsGKSTL 43 (241)
T cd03256 32 LIGPSGAGKSTL 43 (241)
T ss_pred EECCCCCCHHHH
Confidence 469999999874
No 462
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=44.62 E-value=9.8 Score=29.08 Aligned_cols=12 Identities=25% Similarity=0.562 Sum_probs=10.2
Q ss_pred eecCCCCCCceE
Q psy12526 82 AYGQTGEKTNYL 93 (103)
Q Consensus 82 aYGqtgSGKT~T 93 (103)
-||.+|||||.-
T Consensus 29 lFG~SGsGKTsl 40 (352)
T COG4148 29 LFGPSGSGKTSL 40 (352)
T ss_pred EecCCCCChhhH
Confidence 389999999974
No 463
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=44.60 E-value=8 Score=26.58 Aligned_cols=13 Identities=15% Similarity=0.089 Sum_probs=10.6
Q ss_pred EeecCCCCCCceE
Q psy12526 81 FAYGQTGEKTNYL 93 (103)
Q Consensus 81 ~aYGqtgSGKT~T 93 (103)
.--|.+|||||.-
T Consensus 30 ~i~G~nGsGKSTL 42 (210)
T cd03269 30 GLLGPNGAGKTTT 42 (210)
T ss_pred EEECCCCCCHHHH
Confidence 4479999999974
No 464
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=44.54 E-value=13 Score=31.29 Aligned_cols=27 Identities=11% Similarity=0.231 Sum_probs=18.0
Q ss_pred HHHhhCCCcEEEEeecCCCCCCceEecc
Q psy12526 69 LDNAFQGYNACIFAYGQTGEKTNYLLNG 96 (103)
Q Consensus 69 v~~~~~G~n~ti~aYGqtgSGKT~Tm~G 96 (103)
+..++.+ +-.++--|..|+|||++|-.
T Consensus 361 v~~i~~s-~~~~il~G~aGTGKTtll~~ 387 (744)
T TIGR02768 361 VRHVTGS-GDIAVVVGRAGTGKSTMLKA 387 (744)
T ss_pred HHHHhcC-CCEEEEEecCCCCHHHHHHH
Confidence 3444544 23455789999999987643
No 465
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=44.41 E-value=5 Score=27.09 Aligned_cols=12 Identities=25% Similarity=0.410 Sum_probs=10.1
Q ss_pred eecCCCCCCceE
Q psy12526 82 AYGQTGEKTNYL 93 (103)
Q Consensus 82 aYGqtgSGKT~T 93 (103)
--|.+|||||.-
T Consensus 30 l~G~nGsGKStL 41 (180)
T cd03214 30 ILGPNGAGKSTL 41 (180)
T ss_pred EECCCCCCHHHH
Confidence 469999999974
No 466
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=44.40 E-value=22 Score=28.68 Aligned_cols=17 Identities=12% Similarity=0.006 Sum_probs=14.2
Q ss_pred EEEEeecCCCCCCceEe
Q psy12526 78 ACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 78 ~ti~aYGqtgSGKT~Tm 94 (103)
-.++-+|..|+|||.+.
T Consensus 44 ~a~Lf~Gp~G~GKTT~A 60 (507)
T PRK06645 44 GGYLLTGIRGVGKTTSA 60 (507)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 46788999999999753
No 467
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=44.38 E-value=5 Score=26.30 Aligned_cols=14 Identities=29% Similarity=0.328 Sum_probs=11.0
Q ss_pred EeecCCCCCCceEe
Q psy12526 81 FAYGQTGEKTNYLL 94 (103)
Q Consensus 81 ~aYGqtgSGKT~Tm 94 (103)
.--|.+|+|||.-+
T Consensus 30 ~i~G~nGsGKStLl 43 (144)
T cd03221 30 GLVGRNGAGKSTLL 43 (144)
T ss_pred EEECCCCCCHHHHH
Confidence 34799999999743
No 468
>PRK13700 conjugal transfer protein TraD; Provisional
Probab=44.34 E-value=7.2 Score=32.90 Aligned_cols=16 Identities=13% Similarity=0.254 Sum_probs=13.1
Q ss_pred EEeecCCCCCCceEec
Q psy12526 80 IFAYGQTGEKTNYLLN 95 (103)
Q Consensus 80 i~aYGqtgSGKT~Tm~ 95 (103)
++..|.||||||..|.
T Consensus 188 ~li~GttGSGKS~~i~ 203 (732)
T PRK13700 188 FCLHGTVGAGKSEVIR 203 (732)
T ss_pred eEEeCCCCCCHHHHHH
Confidence 4668999999998764
No 469
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=44.29 E-value=5.5 Score=30.35 Aligned_cols=13 Identities=31% Similarity=0.391 Sum_probs=10.8
Q ss_pred eecCCCCCCceEe
Q psy12526 82 AYGQTGEKTNYLL 94 (103)
Q Consensus 82 aYGqtgSGKT~Tm 94 (103)
-.|.+|||||..+
T Consensus 35 llG~sGsGKSTLL 47 (356)
T PRK11650 35 LVGPSGCGKSTLL 47 (356)
T ss_pred EECCCCCcHHHHH
Confidence 3799999999854
No 470
>TIGR03754 conj_TOL_TraD conjugative coupling factor TraD, TOL family. Members of this protein are assigned by homology to the TraD family of conjugative coupling factor. This particular clade serves as a marker for an extended gene region that occurs occasionally on plasmids, including the toluene catabolism TOL plasmid. More commonly, the gene region is chromosomal, flanked by various markers of conjugative transfer and insertion.
Probab=44.09 E-value=11 Score=31.44 Aligned_cols=15 Identities=20% Similarity=0.184 Sum_probs=12.6
Q ss_pred EEeecCCCCCCceEe
Q psy12526 80 IFAYGQTGEKTNYLL 94 (103)
Q Consensus 80 i~aYGqtgSGKT~Tm 94 (103)
.+..|.||+|||-.+
T Consensus 183 tlV~GtTGsGKT~l~ 197 (643)
T TIGR03754 183 TLVLGTTRVGKTRLA 197 (643)
T ss_pred eEEECCCCCCHHHHH
Confidence 457899999999765
No 471
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=44.07 E-value=13 Score=25.60 Aligned_cols=13 Identities=23% Similarity=0.322 Sum_probs=10.5
Q ss_pred EeecCCCCCCceE
Q psy12526 81 FAYGQTGEKTNYL 93 (103)
Q Consensus 81 ~aYGqtgSGKT~T 93 (103)
.-.|.+|||||..
T Consensus 34 ~l~G~nGsGKSTL 46 (218)
T cd03255 34 AIVGPSGSGKSTL 46 (218)
T ss_pred EEEcCCCCCHHHH
Confidence 3479999999963
No 472
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=44.02 E-value=8.1 Score=29.72 Aligned_cols=14 Identities=29% Similarity=0.335 Sum_probs=11.4
Q ss_pred EeecCCCCCCceEe
Q psy12526 81 FAYGQTGEKTNYLL 94 (103)
Q Consensus 81 ~aYGqtgSGKT~Tm 94 (103)
--.|.+|||||..|
T Consensus 49 ~llGpsGsGKSTLL 62 (377)
T PRK11607 49 ALLGASGCGKSTLL 62 (377)
T ss_pred EEECCCCCcHHHHH
Confidence 34799999999864
No 473
>PRK10876 recB exonuclease V subunit beta; Provisional
Probab=43.98 E-value=5 Score=35.45 Aligned_cols=13 Identities=8% Similarity=0.281 Sum_probs=10.6
Q ss_pred ecCCCCCCceEec
Q psy12526 83 YGQTGEKTNYLLN 95 (103)
Q Consensus 83 YGqtgSGKT~Tm~ 95 (103)
=..-|+|||||+.
T Consensus 23 EASAGTGKTyTIa 35 (1181)
T PRK10876 23 EASAGTGKTFTIA 35 (1181)
T ss_pred EeCCCCcHHHHHH
Confidence 3467999999986
No 474
>CHL00095 clpC Clp protease ATP binding subunit
Probab=43.96 E-value=33 Score=29.14 Aligned_cols=36 Identities=25% Similarity=0.266 Sum_probs=21.5
Q ss_pred CHHHHHHHHHHHHHHHhhCCC------cEEEEeecCCCCCCce
Q psy12526 56 SQEKVFDALGRDILDNAFQGY------NACIFAYGQTGEKTNY 92 (103)
Q Consensus 56 ~q~~v~~~~~~~lv~~~~~G~------n~ti~aYGqtgSGKT~ 92 (103)
.|++.-..+..-+ .....|. -+.++-+|++|+|||+
T Consensus 513 GQ~~ai~~l~~~i-~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~ 554 (821)
T CHL00095 513 GQDEAVVAVSKAI-RRARVGLKNPNRPIASFLFSGPTGVGKTE 554 (821)
T ss_pred ChHHHHHHHHHHH-HHHhhcccCCCCCceEEEEECCCCCcHHH
Confidence 5665555554333 3323333 2455669999999996
No 475
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=43.91 E-value=14 Score=24.01 Aligned_cols=18 Identities=17% Similarity=0.261 Sum_probs=14.1
Q ss_pred cEEEEeecCCCCCCceEe
Q psy12526 77 NACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 77 n~ti~aYGqtgSGKT~Tm 94 (103)
...|.-.|..|+|||.-+
T Consensus 14 ~~~v~i~G~~g~GKStLl 31 (173)
T cd04155 14 EPRILILGLDNAGKTTIL 31 (173)
T ss_pred ccEEEEEccCCCCHHHHH
Confidence 456778999999998643
No 476
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=43.83 E-value=8.4 Score=27.02 Aligned_cols=13 Identities=23% Similarity=0.332 Sum_probs=10.5
Q ss_pred EeecCCCCCCceE
Q psy12526 81 FAYGQTGEKTNYL 93 (103)
Q Consensus 81 ~aYGqtgSGKT~T 93 (103)
.-.|.+|||||..
T Consensus 30 ~l~G~nGsGKSTL 42 (235)
T cd03261 30 AIIGPSGSGKSTL 42 (235)
T ss_pred EEECCCCCCHHHH
Confidence 3479999999973
No 477
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=43.83 E-value=8.6 Score=28.12 Aligned_cols=13 Identities=31% Similarity=0.503 Sum_probs=11.0
Q ss_pred eecCCCCCCceEe
Q psy12526 82 AYGQTGEKTNYLL 94 (103)
Q Consensus 82 aYGqtgSGKT~Tm 94 (103)
--|.+|+|||.+|
T Consensus 34 llG~NGaGKTTlL 46 (237)
T COG0410 34 LLGRNGAGKTTLL 46 (237)
T ss_pred EECCCCCCHHHHH
Confidence 3799999999865
No 478
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=43.82 E-value=12 Score=30.26 Aligned_cols=18 Identities=22% Similarity=0.525 Sum_probs=13.2
Q ss_pred CCCcEEEEeecCCCCCCceEe
Q psy12526 74 QGYNACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 74 ~G~n~ti~aYGqtgSGKT~Tm 94 (103)
.|+|+ -.|.||+|||-.|
T Consensus 22 ~g~~v---itG~nGaGKS~ll 39 (563)
T TIGR00634 22 RGLTV---LTGETGAGKSMII 39 (563)
T ss_pred CCeEE---EECCCCCCHHHHH
Confidence 46554 4899999998543
No 479
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=43.69 E-value=15 Score=29.08 Aligned_cols=29 Identities=28% Similarity=0.336 Sum_probs=21.0
Q ss_pred HHHHHhhC-CC--cEEEEeecCCCCCCceEec
Q psy12526 67 DILDNAFQ-GY--NACIFAYGQTGEKTNYLLN 95 (103)
Q Consensus 67 ~lv~~~~~-G~--n~ti~aYGqtgSGKT~Tm~ 95 (103)
+-++.++. |+ ...++-+|..|+|||..++
T Consensus 81 ~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~l 112 (454)
T TIGR00416 81 GELDRVLGGGIVPGSLILIGGDPGIGKSTLLL 112 (454)
T ss_pred HHHHHHhcCCccCCeEEEEEcCCCCCHHHHHH
Confidence 45677775 33 5677889999999997543
No 480
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=43.65 E-value=23 Score=28.52 Aligned_cols=20 Identities=15% Similarity=0.114 Sum_probs=15.3
Q ss_pred CCCcE-EEEeecCCCCCCceE
Q psy12526 74 QGYNA-CIFAYGQTGEKTNYL 93 (103)
Q Consensus 74 ~G~n~-ti~aYGqtgSGKT~T 93 (103)
.|.-. .++-+|..|+|||.+
T Consensus 31 ~~ri~ha~Lf~Gp~G~GKTT~ 51 (491)
T PRK14964 31 LNKIPQSILLVGASGVGKTTC 51 (491)
T ss_pred cCCCCceEEEECCCCccHHHH
Confidence 34433 688899999999974
No 481
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=43.62 E-value=9.3 Score=26.58 Aligned_cols=16 Identities=19% Similarity=0.196 Sum_probs=12.3
Q ss_pred EEEeecCCCCCCceEe
Q psy12526 79 CIFAYGQTGEKTNYLL 94 (103)
Q Consensus 79 ti~aYGqtgSGKT~Tm 94 (103)
.+.--|++|+|||..|
T Consensus 27 ~~~ltGpNg~GKSTll 42 (199)
T cd03283 27 GILITGSNMSGKSTFL 42 (199)
T ss_pred EEEEECCCCCChHHHH
Confidence 3456799999999754
No 482
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=43.61 E-value=27 Score=26.36 Aligned_cols=17 Identities=24% Similarity=0.173 Sum_probs=14.8
Q ss_pred CcEEEEeecCCCCCCce
Q psy12526 76 YNACIFAYGQTGEKTNY 92 (103)
Q Consensus 76 ~n~ti~aYGqtgSGKT~ 92 (103)
....|+..|.+|||||.
T Consensus 91 ~p~iIlI~G~sgsGKSt 107 (301)
T PRK04220 91 EPIIILIGGASGVGTST 107 (301)
T ss_pred CCEEEEEECCCCCCHHH
Confidence 45789999999999986
No 483
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=43.58 E-value=5.1 Score=30.06 Aligned_cols=12 Identities=17% Similarity=0.318 Sum_probs=10.1
Q ss_pred eecCCCCCCceE
Q psy12526 82 AYGQTGEKTNYL 93 (103)
Q Consensus 82 aYGqtgSGKT~T 93 (103)
--|.+|||||..
T Consensus 38 lvG~sGsGKSTL 49 (326)
T PRK11022 38 IVGESGSGKSVS 49 (326)
T ss_pred EECCCCChHHHH
Confidence 359999999875
No 484
>KOG2228|consensus
Probab=43.32 E-value=49 Score=25.99 Aligned_cols=35 Identities=17% Similarity=0.360 Sum_probs=24.3
Q ss_pred CHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEe
Q psy12526 56 SQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 56 ~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm 94 (103)
.|..++.-+- ..++.|=.-.++--|+.|||||+-+
T Consensus 32 ~~~~l~~~lk----qt~~~gEsnsviiigprgsgkT~li 66 (408)
T KOG2228|consen 32 EQKHLSELLK----QTILHGESNSVIIIGPRGSGKTILI 66 (408)
T ss_pred HHHHHHHHHH----HHHHhcCCCceEEEccCCCCceEee
Confidence 4555554332 4466777667888999999999854
No 485
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=43.14 E-value=9.8 Score=28.67 Aligned_cols=19 Identities=11% Similarity=0.314 Sum_probs=15.4
Q ss_pred CCcEEEEeecCCCCCCceE
Q psy12526 75 GYNACIFAYGQTGEKTNYL 93 (103)
Q Consensus 75 G~n~ti~aYGqtgSGKT~T 93 (103)
..+.-|+-+|++|+||++.
T Consensus 20 ~~~~pVLI~GE~GtGK~~l 38 (329)
T TIGR02974 20 PLDRPVLIIGERGTGKELI 38 (329)
T ss_pred CCCCCEEEECCCCChHHHH
Confidence 4566788899999999763
No 486
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=43.11 E-value=7.7 Score=26.64 Aligned_cols=14 Identities=21% Similarity=0.162 Sum_probs=10.9
Q ss_pred EEeecCCCCCCceE
Q psy12526 80 IFAYGQTGEKTNYL 93 (103)
Q Consensus 80 i~aYGqtgSGKT~T 93 (103)
+--.|++|||||..
T Consensus 28 ~~l~G~nGsGKSTL 41 (177)
T cd03222 28 IGIVGPNGTGKTTA 41 (177)
T ss_pred EEEECCCCChHHHH
Confidence 33479999999874
No 487
>COG1866 PckA Phosphoenolpyruvate carboxykinase (ATP) [Energy production and conversion]
Probab=43.09 E-value=19 Score=29.08 Aligned_cols=21 Identities=19% Similarity=0.351 Sum_probs=16.2
Q ss_pred EEEeecCCCCCCce-------EeccCCC
Q psy12526 79 CIFAYGQTGEKTNY-------LLNGNGP 99 (103)
Q Consensus 79 ti~aYGqtgSGKT~-------Tm~G~~~ 99 (103)
..+-+|-+|+|||. +++|+++
T Consensus 229 valFFGLSGTGKTTLSaDp~R~LIGDDE 256 (529)
T COG1866 229 VALFFGLSGTGKTTLSADPHRRLIGDDE 256 (529)
T ss_pred eEEEEeccCCCcceeccCCccccccCcc
Confidence 35679999999986 5667664
No 488
>PHA02558 uvsW UvsW helicase; Provisional
Probab=43.07 E-value=21 Score=28.37 Aligned_cols=24 Identities=4% Similarity=0.022 Sum_probs=16.4
Q ss_pred HHHhhCCCcEEEEeecCCCCCCceEe
Q psy12526 69 LDNAFQGYNACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 69 v~~~~~G~n~ti~aYGqtgSGKT~Tm 94 (103)
+..++++-++ +...+||+|||.++
T Consensus 123 v~~~l~~~~~--il~apTGsGKT~i~ 146 (501)
T PHA02558 123 VYEGLKNNRR--LLNLPTSAGKSLIQ 146 (501)
T ss_pred HHHHHhcCce--EEEeCCCCCHHHHH
Confidence 3445555554 45789999999754
No 489
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=43.02 E-value=8.7 Score=26.93 Aligned_cols=13 Identities=23% Similarity=0.332 Sum_probs=10.5
Q ss_pred EeecCCCCCCceE
Q psy12526 81 FAYGQTGEKTNYL 93 (103)
Q Consensus 81 ~aYGqtgSGKT~T 93 (103)
.--|.+|||||..
T Consensus 39 ~l~G~nGsGKSTL 51 (233)
T PRK11629 39 AIVGSSGSGKSTL 51 (233)
T ss_pred EEECCCCCCHHHH
Confidence 3479999999974
No 490
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=42.88 E-value=8.8 Score=27.55 Aligned_cols=14 Identities=21% Similarity=0.202 Sum_probs=11.0
Q ss_pred EEeecCCCCCCceE
Q psy12526 80 IFAYGQTGEKTNYL 93 (103)
Q Consensus 80 i~aYGqtgSGKT~T 93 (103)
+--.|.+|||||..
T Consensus 28 ~~i~G~NGsGKSTL 41 (246)
T cd03237 28 IGILGPNGIGKTTF 41 (246)
T ss_pred EEEECCCCCCHHHH
Confidence 34579999999974
No 491
>PRK13876 conjugal transfer coupling protein TraG; Provisional
Probab=42.85 E-value=18 Score=30.20 Aligned_cols=19 Identities=11% Similarity=0.079 Sum_probs=15.8
Q ss_pred CcEEEEeecCCCCCCceEe
Q psy12526 76 YNACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 76 ~n~ti~aYGqtgSGKT~Tm 94 (103)
-+.-++++|.||||||-.+
T Consensus 143 g~~hvLviApTrSGKgvg~ 161 (663)
T PRK13876 143 GPEHVLCFAPTRSGKGVGL 161 (663)
T ss_pred CCceEEEEecCCCCcceeE
Confidence 3567889999999999765
No 492
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=42.84 E-value=9 Score=31.79 Aligned_cols=19 Identities=11% Similarity=0.230 Sum_probs=15.4
Q ss_pred cEEEEeecCCCCCCceEec
Q psy12526 77 NACIFAYGQTGEKTNYLLN 95 (103)
Q Consensus 77 n~ti~aYGqtgSGKT~Tm~ 95 (103)
++-++..|--|||||.||.
T Consensus 17 ~g~~lV~AgaGSGKT~~l~ 35 (726)
T TIGR01073 17 EGPLLIMAGAGSGKTRVLT 35 (726)
T ss_pred CCCEEEEeCCCCCHHHHHH
Confidence 3457788999999999875
No 493
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=42.79 E-value=25 Score=27.68 Aligned_cols=20 Identities=15% Similarity=0.306 Sum_probs=14.8
Q ss_pred hCCCcEEEEeecCCCCCCce
Q psy12526 73 FQGYNACIFAYGQTGEKTNY 92 (103)
Q Consensus 73 ~~G~n~ti~aYGqtgSGKT~ 92 (103)
+......|+-+|+||+||..
T Consensus 97 ~ap~~~~vLi~GetGtGKel 116 (403)
T COG1221 97 YAPSGLPVLIIGETGTGKEL 116 (403)
T ss_pred hCCCCCcEEEecCCCccHHH
Confidence 44444557779999999975
No 494
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=42.74 E-value=14 Score=25.28 Aligned_cols=11 Identities=18% Similarity=0.311 Sum_probs=9.7
Q ss_pred eecCCCCCCce
Q psy12526 82 AYGQTGEKTNY 92 (103)
Q Consensus 82 aYGqtgSGKT~ 92 (103)
-.|.+|||||.
T Consensus 32 i~G~nGsGKST 42 (214)
T cd03292 32 LVGPSGAGKST 42 (214)
T ss_pred EECCCCCCHHH
Confidence 47999999986
No 495
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=42.74 E-value=10 Score=29.10 Aligned_cols=14 Identities=29% Similarity=0.465 Sum_probs=11.3
Q ss_pred EeecCCCCCCceEe
Q psy12526 81 FAYGQTGEKTNYLL 94 (103)
Q Consensus 81 ~aYGqtgSGKT~Tm 94 (103)
+-+|++|+|||..+
T Consensus 27 vi~G~NGsGKT~lL 40 (365)
T TIGR00611 27 VIVGPNGQGKTNLL 40 (365)
T ss_pred EEECCCCCCHHHHH
Confidence 35999999998744
No 496
>PRK00064 recF recombination protein F; Reviewed
Probab=42.72 E-value=10 Score=28.94 Aligned_cols=14 Identities=29% Similarity=0.501 Sum_probs=11.2
Q ss_pred EeecCCCCCCceEe
Q psy12526 81 FAYGQTGEKTNYLL 94 (103)
Q Consensus 81 ~aYGqtgSGKT~Tm 94 (103)
+-+|++|+|||-.+
T Consensus 27 ~i~G~NgsGKT~ll 40 (361)
T PRK00064 27 VLVGENGQGKTNLL 40 (361)
T ss_pred EEECCCCCCHHHHH
Confidence 35899999998643
No 497
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=42.64 E-value=8.7 Score=29.56 Aligned_cols=13 Identities=23% Similarity=0.353 Sum_probs=10.8
Q ss_pred eecCCCCCCceEe
Q psy12526 82 AYGQTGEKTNYLL 94 (103)
Q Consensus 82 aYGqtgSGKT~Tm 94 (103)
-.|.+|||||..|
T Consensus 45 LlGpsGsGKSTLL 57 (375)
T PRK09452 45 LLGPSGCGKTTVL 57 (375)
T ss_pred EECCCCCcHHHHH
Confidence 4799999999754
No 498
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=42.58 E-value=11 Score=28.68 Aligned_cols=26 Identities=12% Similarity=0.083 Sum_probs=17.2
Q ss_pred HHHHHHhhCCCcEEEEeecCCCCCCceE
Q psy12526 66 RDILDNAFQGYNACIFAYGQTGEKTNYL 93 (103)
Q Consensus 66 ~~lv~~~~~G~n~ti~aYGqtgSGKT~T 93 (103)
+.++..+..+ .-|+-.|.+|+|||..
T Consensus 55 ~~vl~~l~~~--~~ilL~G~pGtGKTtl 80 (327)
T TIGR01650 55 KAICAGFAYD--RRVMVQGYHGTGKSTH 80 (327)
T ss_pred HHHHHHHhcC--CcEEEEeCCCChHHHH
Confidence 3344444434 3477799999999864
No 499
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=42.57 E-value=5.7 Score=28.93 Aligned_cols=14 Identities=14% Similarity=0.223 Sum_probs=10.9
Q ss_pred EeecCCCCCCceEe
Q psy12526 81 FAYGQTGEKTNYLL 94 (103)
Q Consensus 81 ~aYGqtgSGKT~Tm 94 (103)
--.|.+|||||..+
T Consensus 37 ~i~G~nGsGKSTLl 50 (279)
T PRK13650 37 SIIGHNGSGKSTTV 50 (279)
T ss_pred EEECCCCCCHHHHH
Confidence 34699999999743
No 500
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=42.55 E-value=17 Score=26.82 Aligned_cols=15 Identities=27% Similarity=0.324 Sum_probs=11.4
Q ss_pred EEeecCCCCCCceEe
Q psy12526 80 IFAYGQTGEKTNYLL 94 (103)
Q Consensus 80 i~aYGqtgSGKT~Tm 94 (103)
|.--|..|+|||.++
T Consensus 37 i~i~G~~G~GKttl~ 51 (300)
T TIGR00750 37 VGITGTPGAGKSTLL 51 (300)
T ss_pred EEEECCCCCCHHHHH
Confidence 333499999999855
Done!