Query psy12526
Match_columns 103
No_of_seqs 169 out of 1131
Neff 7.6
Searched_HMMs 29240
Date Fri Aug 16 21:35:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12526.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12526hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gbj_A KIF13B protein; kinesin 99.9 8.1E-28 2.8E-32 180.5 8.0 88 16-103 26-119 (354)
2 2owm_A Nckin3-434, related to 99.9 1.3E-27 4.4E-32 183.7 6.7 70 34-103 94-163 (443)
3 2vvg_A Kinesin-2; motor protei 99.9 1.1E-27 3.7E-32 179.6 5.9 63 34-103 54-116 (350)
4 3nwn_A Kinesin-like protein KI 99.9 4.3E-27 1.5E-31 176.8 7.3 62 34-103 70-134 (359)
5 2zfi_A Kinesin-like protein KI 99.9 7.2E-27 2.4E-31 176.0 7.9 85 18-103 31-118 (366)
6 3lre_A Kinesin-like protein KI 99.9 4.7E-27 1.6E-31 176.4 6.0 63 34-103 70-132 (355)
7 1t5c_A CENP-E protein, centrom 99.9 6.8E-27 2.3E-31 175.2 6.3 63 34-103 42-104 (349)
8 3b6u_A Kinesin-like protein KI 99.9 1E-26 3.5E-31 175.4 7.3 77 20-103 52-131 (372)
9 4a14_A Kinesin, kinesin-like p 99.9 7.6E-27 2.6E-31 174.6 5.4 64 33-103 47-116 (344)
10 1goj_A Kinesin, kinesin heavy 99.9 1.2E-26 4.1E-31 174.2 6.4 63 34-103 45-111 (355)
11 3bfn_A Kinesin-like protein KI 99.9 4.3E-27 1.5E-31 178.3 3.9 63 34-103 63-125 (388)
12 1bg2_A Kinesin; motor protein, 99.9 6.4E-27 2.2E-31 173.9 4.1 60 35-101 43-102 (325)
13 3dc4_A Kinesin-like protein NO 99.9 6E-27 2E-31 175.2 3.8 63 34-103 59-127 (344)
14 2wbe_C Bipolar kinesin KRP-130 99.9 2.8E-26 9.6E-31 173.1 6.0 59 34-99 65-123 (373)
15 2h58_A Kinesin-like protein KI 99.9 2E-26 6.9E-31 171.5 4.9 62 34-103 46-107 (330)
16 2heh_A KIF2C protein; kinesin, 99.9 1.7E-26 5.6E-31 175.0 4.4 62 35-103 100-167 (387)
17 1v8k_A Kinesin-like protein KI 99.9 2.2E-26 7.6E-31 175.4 3.1 56 35-97 120-175 (410)
18 3u06_A Protein claret segregat 99.9 5.3E-26 1.8E-30 173.4 5.0 61 35-103 105-165 (412)
19 1x88_A Kinesin-like protein KI 99.9 4E-26 1.4E-30 171.5 4.2 59 34-99 53-111 (359)
20 2y65_A Kinesin, kinesin heavy 99.9 5.6E-26 1.9E-30 171.1 4.7 62 35-103 50-114 (365)
21 3cob_A Kinesin heavy chain-lik 99.9 6.4E-26 2.2E-30 171.0 4.6 62 34-103 45-106 (369)
22 2nr8_A Kinesin-like protein KI 99.9 2.4E-25 8.1E-30 167.3 6.9 62 34-103 69-133 (358)
23 3t0q_A AGR253WP; kinesin, alph 99.9 1.8E-25 6E-30 167.5 4.3 59 35-103 52-110 (349)
24 1ry6_A Internal kinesin; kines 99.9 1.3E-25 4.3E-30 168.9 3.2 62 35-103 49-116 (360)
25 1f9v_A Kinesin-like protein KA 99.9 3.5E-25 1.2E-29 165.8 4.3 60 34-103 50-109 (347)
26 2rep_A Kinesin-like protein KI 99.9 7.3E-25 2.5E-29 165.5 4.5 61 35-103 82-146 (376)
27 4etp_A Kinesin-like protein KA 99.9 1.1E-24 3.6E-29 165.8 5.1 60 34-103 106-165 (403)
28 4h1g_A Maltose binding protein 99.9 1.7E-24 5.7E-29 173.6 2.4 73 20-103 415-487 (715)
29 2o0a_A S.cerevisiae chromosome 99.6 9E-16 3.1E-20 112.0 4.6 48 36-91 57-107 (298)
30 3ec2_A DNA replication protein 95.6 0.0016 5.4E-08 42.9 -0.6 40 54-94 16-55 (180)
31 2w58_A DNAI, primosome compone 95.2 0.008 2.7E-07 40.0 1.9 38 56-94 33-71 (202)
32 2qgz_A Helicase loader, putati 95.0 0.0062 2.1E-07 44.0 1.0 39 56-95 132-170 (308)
33 1jbk_A CLPB protein; beta barr 94.3 0.031 1.1E-06 35.7 3.0 29 66-94 32-60 (195)
34 2p65_A Hypothetical protein PF 93.7 0.036 1.2E-06 35.5 2.3 29 66-94 32-60 (187)
35 3te6_A Regulatory protein SIR3 93.0 0.035 1.2E-06 40.7 1.6 33 62-94 30-62 (318)
36 1qde_A EIF4A, translation init 91.9 0.1 3.4E-06 34.9 2.7 24 68-93 44-67 (224)
37 3t15_A Ribulose bisphosphate c 91.8 0.085 2.9E-06 37.5 2.3 36 58-93 13-52 (293)
38 1p9r_A General secretion pathw 91.7 0.073 2.5E-06 40.3 2.0 28 68-95 158-185 (418)
39 1vec_A ATP-dependent RNA helic 91.6 0.14 4.8E-06 33.7 3.1 23 69-93 34-56 (206)
40 2chg_A Replication factor C sm 91.5 0.077 2.6E-06 34.6 1.7 16 79-94 40-55 (226)
41 1d2n_A N-ethylmaleimide-sensit 91.3 0.16 5.6E-06 35.2 3.3 21 74-94 61-81 (272)
42 2gxq_A Heat resistant RNA depe 91.1 0.14 4.6E-06 33.7 2.6 23 69-93 32-54 (207)
43 2kjq_A DNAA-related protein; s 91.0 0.063 2.1E-06 34.7 0.9 17 79-95 38-54 (149)
44 3bos_A Putative DNA replicatio 90.8 0.17 5.6E-06 33.7 2.9 19 76-94 51-69 (242)
45 3dkp_A Probable ATP-dependent 90.8 0.15 5E-06 34.7 2.6 23 69-93 60-82 (245)
46 3bor_A Human initiation factor 90.7 0.077 2.6E-06 36.2 1.2 24 68-93 60-83 (237)
47 2bjv_A PSP operon transcriptio 90.3 0.19 6.5E-06 34.6 2.9 17 78-94 30-46 (265)
48 3jvv_A Twitching mobility prot 90.2 0.091 3.1E-06 38.9 1.2 26 70-95 116-141 (356)
49 2pl3_A Probable ATP-dependent 90.0 0.19 6.4E-06 33.9 2.6 23 69-93 56-78 (236)
50 3n70_A Transport activator; si 89.9 0.26 9E-06 31.1 3.1 17 77-93 24-40 (145)
51 1wrb_A DJVLGB; RNA helicase, D 89.8 0.2 6.8E-06 34.2 2.7 23 69-93 54-76 (253)
52 3eiq_A Eukaryotic initiation f 89.8 0.22 7.6E-06 35.9 3.0 25 67-93 69-93 (414)
53 3iuy_A Probable ATP-dependent 89.7 0.21 7.1E-06 33.5 2.6 23 69-93 51-73 (228)
54 3llm_A ATP-dependent RNA helic 89.7 0.15 5E-06 34.8 1.9 24 68-93 69-92 (235)
55 3ly5_A ATP-dependent RNA helic 89.6 0.11 3.8E-06 36.1 1.3 24 68-93 84-107 (262)
56 3b6e_A Interferon-induced heli 89.5 0.052 1.8E-06 35.8 -0.5 23 70-94 43-65 (216)
57 3co5_A Putative two-component 89.5 0.21 7.3E-06 31.5 2.4 16 79-94 29-44 (143)
58 1t6n_A Probable ATP-dependent 89.4 0.23 7.9E-06 33.1 2.6 23 69-93 45-67 (220)
59 3fmo_B ATP-dependent RNA helic 89.2 0.18 6E-06 36.0 2.1 26 68-93 122-147 (300)
60 3fmp_B ATP-dependent RNA helic 89.2 0.21 7.3E-06 37.3 2.6 26 68-93 122-147 (479)
61 3uk6_A RUVB-like 2; hexameric 89.1 0.27 9.2E-06 35.3 3.0 38 56-94 48-87 (368)
62 3h1t_A Type I site-specific re 89.0 0.18 6.3E-06 38.8 2.2 28 67-95 189-216 (590)
63 1fnn_A CDC6P, cell division co 88.7 0.31 1E-05 34.9 3.0 39 55-94 20-61 (389)
64 2qby_B CDC6 homolog 3, cell di 88.6 0.26 8.9E-06 35.4 2.6 39 55-94 23-62 (384)
65 2oap_1 GSPE-2, type II secreti 88.6 0.19 6.6E-06 38.9 2.0 23 71-95 256-278 (511)
66 2oxc_A Probable ATP-dependent 88.6 0.28 9.6E-06 33.1 2.7 23 69-93 55-77 (230)
67 2v1u_A Cell division control p 88.5 0.044 1.5E-06 39.3 -1.6 39 55-94 22-61 (387)
68 3ber_A Probable ATP-dependent 88.4 0.28 9.7E-06 33.8 2.6 24 68-93 73-96 (249)
69 3fe2_A Probable ATP-dependent 87.6 0.29 9.8E-06 33.3 2.2 22 70-93 61-82 (242)
70 1ixz_A ATP-dependent metallopr 87.6 0.1 3.4E-06 35.9 -0.2 15 80-94 52-66 (254)
71 2j0s_A ATP-dependent RNA helic 87.5 0.34 1.2E-05 35.1 2.7 24 68-93 67-90 (410)
72 2c9o_A RUVB-like 1; hexameric 87.2 0.42 1.5E-05 36.0 3.1 38 56-94 41-80 (456)
73 3syl_A Protein CBBX; photosynt 87.0 0.58 2E-05 32.7 3.6 19 76-94 66-84 (309)
74 2eyu_A Twitching motility prot 86.9 0.21 7.2E-06 35.2 1.2 18 77-94 25-42 (261)
75 3fht_A ATP-dependent RNA helic 86.5 0.32 1.1E-05 35.0 2.1 26 68-93 55-80 (412)
76 3oiy_A Reverse gyrase helicase 86.3 0.36 1.2E-05 35.2 2.2 22 69-92 30-51 (414)
77 1sxj_C Activator 1 40 kDa subu 86.2 0.29 9.8E-06 35.1 1.7 15 80-94 49-63 (340)
78 3h4m_A Proteasome-activating n 86.1 0.47 1.6E-05 32.8 2.7 18 77-94 51-68 (285)
79 1l8q_A Chromosomal replication 86.1 0.14 4.6E-06 36.5 -0.1 49 36-94 6-54 (324)
80 1q0u_A Bstdead; DEAD protein, 86.0 0.21 7.1E-06 33.4 0.8 22 70-93 36-57 (219)
81 2r62_A Cell division protease 86.0 0.3 1E-05 33.5 1.6 16 79-94 46-61 (268)
82 1njg_A DNA polymerase III subu 85.9 0.3 1E-05 32.0 1.5 17 78-94 46-62 (250)
83 1gvn_B Zeta; postsegregational 85.7 0.92 3.1E-05 32.1 4.1 31 63-93 14-49 (287)
84 3i5x_A ATP-dependent RNA helic 85.5 0.57 2E-05 35.6 3.1 26 68-93 102-127 (563)
85 1g8p_A Magnesium-chelatase 38 85.3 0.37 1.3E-05 34.1 1.9 17 78-94 46-62 (350)
86 2qz4_A Paraplegin; AAA+, SPG7, 85.2 0.26 8.7E-06 33.5 0.9 18 77-94 39-56 (262)
87 2fz4_A DNA repair protein RAD2 85.0 0.41 1.4E-05 32.9 1.9 23 70-94 103-125 (237)
88 2db3_A ATP-dependent RNA helic 84.9 0.53 1.8E-05 34.9 2.7 23 69-93 87-109 (434)
89 1s2m_A Putative ATP-dependent 84.9 0.43 1.5E-05 34.4 2.0 23 69-93 52-74 (400)
90 3pey_A ATP-dependent RNA helic 84.9 0.43 1.5E-05 33.9 2.1 25 69-93 36-60 (395)
91 1iy2_A ATP-dependent metallopr 84.9 0.17 5.7E-06 35.4 -0.2 15 80-94 76-90 (278)
92 2i4i_A ATP-dependent RNA helic 84.6 0.58 2E-05 33.8 2.6 23 69-93 46-68 (417)
93 2z0m_A 337AA long hypothetical 84.4 0.61 2.1E-05 32.4 2.7 23 70-94 26-48 (337)
94 1iqp_A RFCS; clamp loader, ext 84.2 0.4 1.4E-05 33.4 1.6 36 55-94 28-63 (327)
95 1sxj_D Activator 1 41 kDa subu 83.9 0.3 1E-05 34.6 0.8 27 68-94 49-75 (353)
96 2ewv_A Twitching motility prot 83.6 0.41 1.4E-05 35.4 1.5 19 76-94 135-153 (372)
97 1lv7_A FTSH; alpha/beta domain 83.3 0.3 1E-05 33.4 0.6 18 77-94 45-62 (257)
98 2v1x_A ATP-dependent DNA helic 83.0 0.92 3.1E-05 35.5 3.4 23 69-93 53-75 (591)
99 2r44_A Uncharacterized protein 83.0 0.41 1.4E-05 34.0 1.2 34 55-94 30-63 (331)
100 2z4s_A Chromosomal replication 83.0 0.22 7.7E-06 37.5 -0.1 17 79-95 132-148 (440)
101 1xti_A Probable ATP-dependent 82.8 0.79 2.7E-05 32.7 2.7 25 68-94 38-62 (391)
102 1lkx_A Myosin IE heavy chain; 82.7 0.76 2.6E-05 37.1 2.8 21 73-93 90-110 (697)
103 4a2p_A RIG-I, retinoic acid in 82.6 0.75 2.6E-05 34.4 2.6 23 69-93 16-38 (556)
104 2qby_A CDC6 homolog 1, cell di 82.6 0.14 4.6E-06 36.6 -1.4 19 76-94 44-62 (386)
105 3pfi_A Holliday junction ATP-d 82.5 0.84 2.9E-05 32.3 2.7 39 55-94 32-72 (338)
106 3d8b_A Fidgetin-like protein 1 82.4 0.27 9.1E-06 35.9 0.1 19 76-94 116-134 (357)
107 3fho_A ATP-dependent RNA helic 82.3 0.45 1.5E-05 36.2 1.3 24 70-93 151-174 (508)
108 1ofh_A ATP-dependent HSL prote 82.0 0.37 1.3E-05 33.4 0.7 17 78-94 51-67 (310)
109 2v26_A Myosin VI; calmodulin-b 81.9 0.83 2.9E-05 37.3 2.8 21 73-93 136-156 (784)
110 1w9i_A Myosin II heavy chain; 81.9 0.84 2.9E-05 37.3 2.8 21 73-93 168-188 (770)
111 2ykg_A Probable ATP-dependent 81.6 0.84 2.9E-05 35.6 2.7 23 69-93 22-44 (696)
112 1i84_S Smooth muscle myosin he 81.5 0.98 3.3E-05 38.2 3.1 21 73-93 165-185 (1184)
113 3sqw_A ATP-dependent RNA helic 81.4 1 3.5E-05 34.6 3.1 26 68-93 51-76 (579)
114 4fcw_A Chaperone protein CLPB; 81.4 1.7 5.8E-05 30.2 4.0 38 56-94 21-64 (311)
115 3c8u_A Fructokinase; YP_612366 81.2 1 3.5E-05 29.9 2.6 29 66-94 9-39 (208)
116 1u0j_A DNA replication protein 81.2 1 3.4E-05 32.2 2.7 27 67-93 91-120 (267)
117 1n0w_A DNA repair protein RAD5 81.1 0.53 1.8E-05 31.5 1.2 28 67-94 11-41 (243)
118 3pxg_A Negative regulator of g 81.0 1.3 4.5E-05 33.4 3.5 38 54-95 182-219 (468)
119 1w7j_A Myosin VA; motor protei 80.8 0.97 3.3E-05 37.0 2.8 21 73-93 152-172 (795)
120 3cf0_A Transitional endoplasmi 80.7 0.48 1.7E-05 33.5 0.9 18 77-94 49-66 (301)
121 1in4_A RUVB, holliday junction 80.6 0.31 1.1E-05 35.1 -0.1 15 80-94 54-68 (334)
122 1w5s_A Origin recognition comp 80.5 0.8 2.7E-05 33.0 2.1 25 70-94 40-69 (412)
123 1kk8_A Myosin heavy chain, str 80.4 0.9 3.1E-05 37.4 2.5 21 73-93 165-185 (837)
124 4gl2_A Interferon-induced heli 80.2 0.93 3.2E-05 35.3 2.5 23 69-93 16-38 (699)
125 3b9p_A CG5977-PA, isoform A; A 80.2 0.52 1.8E-05 32.8 0.9 18 77-94 54-71 (297)
126 1g8x_A Myosin II heavy chain f 80.2 0.95 3.3E-05 38.0 2.6 21 73-93 168-188 (1010)
127 3tbk_A RIG-I helicase domain; 80.2 1 3.5E-05 33.5 2.6 23 69-93 13-35 (555)
128 2ycu_A Non muscle myosin 2C, a 79.9 1 3.5E-05 37.7 2.7 21 73-93 142-162 (995)
129 2jlq_A Serine protease subunit 79.7 0.65 2.2E-05 34.8 1.4 24 69-93 12-35 (451)
130 3b85_A Phosphate starvation-in 79.7 0.71 2.4E-05 31.4 1.5 25 68-94 15-39 (208)
131 3eie_A Vacuolar protein sortin 79.4 0.56 1.9E-05 33.5 0.9 17 78-94 52-68 (322)
132 1rz3_A Hypothetical protein rb 79.4 1.2 4E-05 29.5 2.4 18 77-94 22-39 (201)
133 2chq_A Replication factor C sm 79.3 0.69 2.4E-05 32.1 1.3 21 74-94 35-55 (319)
134 2dfs_A Myosin-5A; myosin-V, in 79.3 1.1 3.9E-05 37.8 2.8 21 73-93 152-172 (1080)
135 1ojl_A Transcriptional regulat 78.9 0.77 2.6E-05 32.7 1.5 18 76-93 24-41 (304)
136 4anj_A Unconventional myosin-V 78.8 1.2 4.1E-05 37.6 2.8 21 73-93 140-160 (1052)
137 2pt7_A CAG-ALFA; ATPase, prote 78.7 0.84 2.9E-05 33.1 1.7 21 72-94 168-188 (330)
138 4db1_A Myosin-7; S1DC, cardiac 78.1 1.8 6.1E-05 35.5 3.5 21 73-93 167-187 (783)
139 4gp7_A Metallophosphoesterase; 78.1 0.45 1.5E-05 30.9 0.1 17 79-95 11-27 (171)
140 1wp9_A ATP-dependent RNA helic 78.0 0.6 2.1E-05 33.7 0.7 23 69-94 18-40 (494)
141 2x8a_A Nuclear valosin-contain 78.0 0.41 1.4E-05 33.7 -0.2 15 80-94 47-61 (274)
142 1fuu_A Yeast initiation factor 78.0 0.57 1.9E-05 33.4 0.6 23 69-93 52-74 (394)
143 1tue_A Replication protein E1; 77.9 0.54 1.9E-05 32.7 0.4 16 78-93 59-74 (212)
144 2p5t_B PEZT; postsegregational 77.6 1.3 4.5E-05 30.4 2.4 16 78-93 33-48 (253)
145 1xwi_A SKD1 protein; VPS4B, AA 77.6 0.69 2.3E-05 33.2 0.9 17 78-94 46-62 (322)
146 1rif_A DAR protein, DNA helica 77.5 0.73 2.5E-05 32.0 1.0 13 82-94 133-145 (282)
147 1sxj_E Activator 1 40 kDa subu 77.3 0.56 1.9E-05 33.4 0.4 15 80-94 39-53 (354)
148 3pvs_A Replication-associated 77.3 1 3.4E-05 34.1 1.8 40 54-94 28-67 (447)
149 3nbx_X ATPase RAVA; AAA+ ATPas 77.2 1.2 4.2E-05 34.3 2.3 25 68-94 34-58 (500)
150 2gza_A Type IV secretion syste 76.9 1 3.5E-05 33.0 1.7 22 71-94 171-192 (361)
151 4a74_A DNA repair and recombin 76.4 1.1 3.7E-05 29.6 1.6 28 67-94 12-42 (231)
152 2fwr_A DNA repair protein RAD2 76.4 1.4 4.8E-05 32.7 2.3 23 70-94 103-125 (472)
153 3u61_B DNA polymerase accessor 76.4 1.2 4.1E-05 31.4 1.9 18 77-94 48-65 (324)
154 1e9r_A Conjugal transfer prote 76.4 0.45 1.6E-05 35.3 -0.3 18 77-94 53-70 (437)
155 2qag_C Septin-7; cell cycle, c 76.2 0.63 2.2E-05 35.1 0.4 23 72-94 26-48 (418)
156 1sxj_B Activator 1 37 kDa subu 76.2 1.3 4.4E-05 30.7 2.0 15 80-94 45-59 (323)
157 4ag6_A VIRB4 ATPase, type IV s 76.2 0.41 1.4E-05 35.1 -0.6 19 74-94 34-52 (392)
158 3pxi_A Negative regulator of g 75.6 2.5 8.6E-05 33.7 3.8 38 53-94 181-218 (758)
159 1r6b_X CLPA protein; AAA+, N-t 75.5 1.9 6.5E-05 34.3 3.0 28 68-95 198-225 (758)
160 1hv8_A Putative ATP-dependent 75.4 1.3 4.3E-05 31.1 1.8 24 70-94 38-61 (367)
161 3upu_A ATP-dependent DNA helic 75.3 1.6 5.3E-05 32.8 2.4 36 54-94 27-62 (459)
162 1um8_A ATP-dependent CLP prote 75.3 0.78 2.7E-05 33.3 0.7 17 78-94 73-89 (376)
163 1hqc_A RUVB; extended AAA-ATPa 75.3 0.75 2.6E-05 32.2 0.6 19 76-94 37-55 (324)
164 1gku_B Reverse gyrase, TOP-RG; 74.7 1.7 6E-05 36.3 2.7 23 68-92 64-86 (1054)
165 3vfd_A Spastin; ATPase, microt 74.5 0.92 3.2E-05 33.2 0.9 17 78-94 149-165 (389)
166 3hu3_A Transitional endoplasmi 74.3 1.7 5.9E-05 33.3 2.4 20 75-94 236-255 (489)
167 4a4z_A Antiviral helicase SKI2 74.2 2 6.7E-05 35.8 2.9 22 69-92 48-69 (997)
168 1w36_D RECD, exodeoxyribonucle 74.1 0.6 2.1E-05 36.6 -0.2 18 78-95 165-182 (608)
169 1jr3_A DNA polymerase III subu 74.1 1.2 4.2E-05 31.6 1.5 38 54-94 18-55 (373)
170 2qnr_A Septin-2, protein NEDD5 74.0 0.62 2.1E-05 33.3 -0.1 24 71-94 12-35 (301)
171 3pxi_A Negative regulator of g 73.9 2.6 8.8E-05 33.7 3.4 37 56-93 495-537 (758)
172 3hws_A ATP-dependent CLP prote 73.4 0.92 3.1E-05 32.8 0.7 16 78-93 52-67 (363)
173 2qp9_X Vacuolar protein sortin 73.4 0.92 3.2E-05 33.0 0.7 16 79-94 86-101 (355)
174 1qvr_A CLPB protein; coiled co 73.2 2.8 9.5E-05 34.1 3.5 16 78-93 589-604 (854)
175 2cvh_A DNA repair and recombin 73.1 2.1 7.1E-05 28.0 2.4 28 67-94 7-37 (220)
176 1r6b_X CLPA protein; AAA+, N-t 72.9 3.4 0.00012 32.8 3.9 37 56-93 462-504 (758)
177 2ehv_A Hypothetical protein PH 72.8 0.75 2.6E-05 30.8 0.1 15 80-94 33-47 (251)
178 2b8t_A Thymidine kinase; deoxy 72.5 0.61 2.1E-05 32.3 -0.5 20 77-96 12-31 (223)
179 1gm5_A RECG; helicase, replica 72.4 1.8 6.1E-05 35.2 2.2 37 53-93 369-405 (780)
180 3e70_C DPA, signal recognition 72.2 2.8 9.4E-05 30.5 3.0 17 78-94 130-146 (328)
181 4a2q_A RIG-I, retinoic acid in 72.2 2.2 7.4E-05 34.2 2.6 24 68-93 256-279 (797)
182 2oca_A DAR protein, ATP-depend 71.7 1.4 4.7E-05 33.0 1.3 15 80-94 131-145 (510)
183 3b9q_A Chloroplast SRP recepto 71.5 0.83 2.9E-05 32.8 0.1 16 79-94 102-117 (302)
184 1oyw_A RECQ helicase, ATP-depe 71.2 1.1 3.8E-05 34.3 0.7 23 69-93 34-56 (523)
185 1sxj_A Activator 1 95 kDa subu 71.2 1.9 6.6E-05 32.9 2.0 17 78-94 78-94 (516)
186 2w0m_A SSO2452; RECA, SSPF, un 71.0 0.89 3E-05 29.9 0.1 26 69-94 12-40 (235)
187 2dr3_A UPF0273 protein PH0284; 70.0 2.2 7.5E-05 28.3 1.9 17 78-94 24-40 (247)
188 2px0_A Flagellar biosynthesis 69.9 0.9 3.1E-05 32.5 -0.1 17 79-95 107-123 (296)
189 2yhs_A FTSY, cell division pro 69.8 2.3 7.7E-05 33.1 2.1 16 79-94 295-310 (503)
190 1c4o_A DNA nucleotide excision 69.7 2.3 7.8E-05 33.8 2.2 38 53-95 9-46 (664)
191 3iij_A Coilin-interacting nucl 69.6 1.3 4.5E-05 28.4 0.7 15 79-93 13-27 (180)
192 3rc3_A ATP-dependent RNA helic 69.1 1.3 4.4E-05 35.5 0.7 19 72-92 152-170 (677)
193 2va8_A SSO2462, SKI2-type heli 69.0 2.2 7.7E-05 33.5 2.0 19 73-93 44-62 (715)
194 2p6r_A Afuhel308 helicase; pro 68.9 1.3 4.5E-05 34.9 0.7 30 54-93 27-56 (702)
195 2z83_A Helicase/nucleoside tri 68.7 1.8 6.3E-05 32.4 1.4 15 79-93 23-37 (459)
196 1f2t_A RAD50 ABC-ATPase; DNA d 68.6 2.1 7.2E-05 27.2 1.5 13 81-93 27-39 (149)
197 2zan_A Vacuolar protein sortin 68.6 1.5 5.2E-05 32.9 0.9 17 78-94 168-184 (444)
198 1rj9_A FTSY, signal recognitio 68.5 1.1 3.8E-05 32.2 0.2 16 79-94 104-119 (304)
199 1znw_A Guanylate kinase, GMP k 68.3 1.1 3.8E-05 29.7 0.1 22 71-94 16-37 (207)
200 4a2w_A RIG-I, retinoic acid in 68.3 2.9 0.0001 34.4 2.6 24 69-94 257-280 (936)
201 1qvr_A CLPB protein; coiled co 68.2 1.3 4.4E-05 36.0 0.5 38 54-95 172-209 (854)
202 4ddu_A Reverse gyrase; topoiso 67.7 2.8 9.7E-05 35.3 2.5 23 68-92 86-108 (1104)
203 3kta_A Chromosome segregation 67.6 1.8 6.1E-05 27.7 1.0 14 80-93 29-42 (182)
204 2eyq_A TRCF, transcription-rep 67.5 4.8 0.00017 34.0 3.8 26 68-93 615-640 (1151)
205 2d7d_A Uvrabc system protein B 67.5 2.6 8.8E-05 33.4 2.1 38 53-95 13-50 (661)
206 1zp6_A Hypothetical protein AT 67.1 1.9 6.3E-05 27.8 1.0 16 79-94 11-26 (191)
207 2iut_A DNA translocase FTSK; n 67.1 1.1 3.7E-05 35.5 -0.2 16 79-94 216-231 (574)
208 3l9o_A ATP-dependent RNA helic 67.0 2.6 8.8E-05 35.6 2.1 23 69-93 193-215 (1108)
209 2gk6_A Regulator of nonsense t 66.7 1.9 6.4E-05 33.8 1.1 17 79-95 197-213 (624)
210 4b4t_M 26S protease regulatory 66.6 1.6 5.4E-05 33.2 0.7 16 78-93 216-231 (434)
211 2og2_A Putative signal recogni 66.5 1.2 4.2E-05 32.9 0.1 17 78-94 158-174 (359)
212 3lfu_A DNA helicase II; SF1 he 66.1 1.2 4E-05 34.5 -0.1 19 77-95 22-40 (647)
213 2dhr_A FTSH; AAA+ protein, hex 66.1 1.2 4E-05 34.5 -0.1 16 79-94 66-81 (499)
214 3lnc_A Guanylate kinase, GMP k 65.9 1.7 5.9E-05 29.1 0.7 14 81-94 31-44 (231)
215 4b3f_X DNA-binding protein smu 65.2 1.7 5.7E-05 34.1 0.6 15 81-95 209-223 (646)
216 2zj8_A DNA helicase, putative 65.0 1.7 5.7E-05 34.4 0.6 19 73-93 37-55 (720)
217 1odf_A YGR205W, hypothetical 3 64.9 7.8 0.00027 27.4 4.1 37 58-94 10-48 (290)
218 4b4t_L 26S protease subunit RP 64.8 1.8 6.1E-05 33.0 0.7 16 78-93 216-231 (437)
219 3k1j_A LON protease, ATP-depen 64.8 3.3 0.00011 32.2 2.2 26 67-94 52-77 (604)
220 2qen_A Walker-type ATPase; unk 64.6 3.8 0.00013 28.5 2.3 17 78-94 32-48 (350)
221 2xgj_A ATP-dependent RNA helic 64.5 2.8 9.5E-05 35.0 1.8 20 72-93 98-117 (1010)
222 4b4t_K 26S protease regulatory 64.5 1.8 6.2E-05 32.8 0.7 16 78-93 207-222 (428)
223 4etp_B Spindle POLE BODY-assoc 64.4 25 0.00086 25.9 6.7 47 34-86 90-137 (333)
224 2fna_A Conserved hypothetical 63.9 2.6 9E-05 29.4 1.4 17 78-94 31-47 (357)
225 1vma_A Cell division protein F 63.8 1.5 5.1E-05 31.6 0.1 17 78-94 105-121 (306)
226 1moz_A ARL1, ADP-ribosylation 63.7 4 0.00014 25.6 2.2 27 67-93 7-34 (183)
227 3o8b_A HCV NS3 protease/helica 63.4 3.3 0.00011 33.2 2.0 15 79-93 234-248 (666)
228 2ius_A DNA translocase FTSK; n 62.5 1.5 5.1E-05 34.1 -0.2 15 80-94 170-184 (512)
229 1v5w_A DMC1, meiotic recombina 62.4 5.6 0.00019 28.7 2.9 28 67-94 109-139 (343)
230 1htw_A HI0065; nucleotide-bind 62.3 1.7 5.8E-05 28.2 0.1 16 79-94 35-50 (158)
231 1pzn_A RAD51, DNA repair and r 62.1 5.3 0.00018 29.0 2.8 27 67-93 118-147 (349)
232 3vaa_A Shikimate kinase, SK; s 62.0 2.8 9.6E-05 27.4 1.2 15 79-93 27-41 (199)
233 1e69_A Chromosome segregation 61.6 2.7 9.1E-05 30.0 1.1 12 82-93 29-40 (322)
234 3kl4_A SRP54, signal recogniti 61.6 8.2 0.00028 29.2 3.8 17 78-94 98-114 (433)
235 1z6g_A Guanylate kinase; struc 61.5 1.6 5.4E-05 29.4 -0.1 13 82-94 28-40 (218)
236 3uie_A Adenylyl-sulfate kinase 61.2 4.4 0.00015 26.5 2.0 17 77-93 25-41 (200)
237 1uaa_A REP helicase, protein ( 60.5 1.7 6E-05 34.0 -0.1 19 77-95 15-33 (673)
238 2i1q_A DNA repair and recombin 60.0 6.1 0.00021 27.9 2.8 28 67-94 85-115 (322)
239 4b4t_J 26S protease regulatory 59.8 2.8 9.6E-05 31.7 1.0 16 78-93 183-198 (405)
240 2ga8_A Hypothetical 39.9 kDa p 59.6 9.6 0.00033 28.3 3.8 21 74-94 21-41 (359)
241 3auy_A DNA double-strand break 59.3 3.3 0.00011 30.2 1.2 12 81-92 29-40 (371)
242 3e1s_A Exodeoxyribonuclease V, 59.3 3.3 0.00011 32.4 1.3 18 78-95 205-222 (574)
243 1w4r_A Thymidine kinase; type 59.3 3.8 0.00013 27.9 1.5 16 76-91 19-34 (195)
244 3m6a_A ATP-dependent protease 59.1 2.1 7.1E-05 33.1 0.1 17 78-94 109-125 (543)
245 3tif_A Uncharacterized ABC tra 58.9 2.1 7.1E-05 29.4 0.1 13 81-93 35-47 (235)
246 2qor_A Guanylate kinase; phosp 58.4 3.1 0.00011 27.3 0.9 13 80-92 15-27 (204)
247 2ce7_A Cell division protein F 58.4 2.7 9.3E-05 32.2 0.7 17 78-94 50-66 (476)
248 4b4t_H 26S protease regulatory 58.3 2.5 8.6E-05 32.6 0.5 17 77-93 243-259 (467)
249 2yvu_A Probable adenylyl-sulfa 58.2 4 0.00014 26.2 1.4 17 77-93 13-29 (186)
250 2whx_A Serine protease/ntpase/ 58.1 3.8 0.00013 32.2 1.5 23 69-93 180-202 (618)
251 4g1u_C Hemin import ATP-bindin 57.9 1.4 4.7E-05 31.0 -1.0 12 83-94 43-54 (266)
252 1y63_A LMAJ004144AAA protein; 57.7 3 0.0001 27.0 0.7 15 79-93 12-26 (184)
253 3gfo_A Cobalt import ATP-bindi 57.7 1.4 4.8E-05 31.3 -1.0 13 82-94 39-51 (275)
254 3dm5_A SRP54, signal recogniti 57.2 12 0.0004 28.5 4.0 19 77-95 100-118 (443)
255 1zu4_A FTSY; GTPase, signal re 56.9 2.4 8.1E-05 30.7 0.1 16 79-94 107-122 (320)
256 2xzl_A ATP-dependent helicase 56.7 3.6 0.00012 33.5 1.2 17 79-95 377-393 (802)
257 2bbw_A Adenylate kinase 4, AK4 56.6 3.5 0.00012 27.9 0.9 16 78-93 28-43 (246)
258 3qks_A DNA double-strand break 56.4 4.7 0.00016 26.8 1.5 13 81-93 27-39 (203)
259 1zj6_A ADP-ribosylation factor 56.2 11 0.00036 23.8 3.2 22 72-93 11-32 (187)
260 2z43_A DNA repair and recombin 56.1 6 0.0002 28.2 2.2 28 67-94 94-124 (324)
261 2qmh_A HPR kinase/phosphorylas 56.1 4.1 0.00014 28.0 1.2 18 76-93 33-50 (205)
262 3t61_A Gluconokinase; PSI-biol 55.8 3.3 0.00011 27.0 0.7 15 79-93 20-34 (202)
263 3a8t_A Adenylate isopentenyltr 54.9 4.3 0.00015 29.9 1.2 14 79-92 42-55 (339)
264 2wjy_A Regulator of nonsense t 54.9 4 0.00014 33.2 1.1 17 79-95 373-389 (800)
265 2qag_A Septin-2, protein NEDD5 54.8 3.6 0.00012 30.0 0.8 22 72-93 32-53 (361)
266 2jeo_A Uridine-cytidine kinase 54.6 1.7 5.8E-05 29.6 -1.0 13 82-94 30-42 (245)
267 2w00_A HSDR, R.ECOR124I; ATP-b 54.6 2.2 7.5E-05 35.9 -0.5 15 81-95 304-318 (1038)
268 1j8m_F SRP54, signal recogniti 54.2 21 0.00073 25.2 4.8 16 79-94 100-115 (297)
269 3rlf_A Maltose/maltodextrin im 53.8 1.9 6.6E-05 32.2 -0.8 13 82-94 34-46 (381)
270 3foz_A TRNA delta(2)-isopenten 53.8 4.1 0.00014 29.8 0.9 15 78-92 11-25 (316)
271 4a15_A XPD helicase, ATP-depen 53.7 8 0.00027 30.4 2.7 35 53-93 4-38 (620)
272 2xau_A PRE-mRNA-splicing facto 53.6 4.4 0.00015 32.7 1.2 14 79-92 111-124 (773)
273 1s96_A Guanylate kinase, GMP k 53.5 2.8 9.7E-05 28.5 0.1 14 80-93 19-32 (219)
274 3aez_A Pantothenate kinase; tr 53.5 2.8 9.7E-05 30.1 0.1 17 78-94 91-107 (312)
275 1svm_A Large T antigen; AAA+ f 53.4 8.9 0.0003 28.4 2.8 15 79-93 171-185 (377)
276 3qf7_A RAD50; ABC-ATPase, ATPa 53.3 4.2 0.00014 29.7 1.0 12 82-93 28-39 (365)
277 2v3c_C SRP54, signal recogniti 52.9 3.6 0.00012 31.0 0.6 16 79-94 101-116 (432)
278 4b4t_I 26S protease regulatory 52.4 4.5 0.00015 30.9 1.0 16 78-93 217-232 (437)
279 2wv9_A Flavivirin protease NS2 52.4 5.3 0.00018 31.8 1.5 18 74-93 240-257 (673)
280 2zr9_A Protein RECA, recombina 52.3 7.6 0.00026 28.3 2.2 27 67-93 47-77 (349)
281 1nlf_A Regulatory protein REPA 51.9 4.8 0.00016 27.8 1.0 16 79-94 32-47 (279)
282 2vhj_A Ntpase P4, P4; non- hyd 51.8 5.2 0.00018 29.4 1.3 16 78-93 124-139 (331)
283 2bwj_A Adenylate kinase 5; pho 51.7 3.9 0.00013 26.3 0.5 14 79-92 14-27 (199)
284 2onk_A Molybdate/tungstate ABC 51.6 3.2 0.00011 28.6 0.1 13 81-93 28-40 (240)
285 2pcj_A ABC transporter, lipopr 51.5 2.9 0.0001 28.4 -0.1 12 82-93 35-46 (224)
286 1g6h_A High-affinity branched- 51.5 3.3 0.00011 28.7 0.1 13 82-94 38-50 (257)
287 1ji0_A ABC transporter; ATP bi 51.5 3.3 0.00011 28.4 0.1 13 82-94 37-49 (240)
288 1sq5_A Pantothenate kinase; P- 51.4 9.5 0.00032 27.0 2.6 17 78-94 81-97 (308)
289 2yz2_A Putative ABC transporte 51.3 3.3 0.00011 28.9 0.1 13 82-94 38-50 (266)
290 2zts_A Putative uncharacterize 51.0 5.5 0.00019 26.3 1.2 24 69-92 19-45 (251)
291 2ged_A SR-beta, signal recogni 51.0 5 0.00017 25.4 1.0 18 77-94 48-65 (193)
292 1ukz_A Uridylate kinase; trans 50.8 4.5 0.00015 26.3 0.7 15 79-93 17-31 (203)
293 1ypw_A Transitional endoplasmi 50.7 4.3 0.00015 32.9 0.7 17 78-94 239-255 (806)
294 4eun_A Thermoresistant glucoki 50.6 5.6 0.00019 26.0 1.2 15 79-93 31-45 (200)
295 1sgw_A Putative ABC transporte 50.6 3.1 0.0001 28.3 -0.2 13 82-94 40-52 (214)
296 3hr8_A Protein RECA; alpha and 50.5 7.7 0.00026 28.6 2.0 27 67-93 47-77 (356)
297 1g41_A Heat shock protein HSLU 49.9 4.5 0.00015 30.8 0.7 15 79-93 52-66 (444)
298 1b0u_A Histidine permease; ABC 49.8 3.6 0.00012 28.7 0.1 12 82-93 37-48 (262)
299 2yyz_A Sugar ABC transporter, 49.8 3.6 0.00012 30.4 0.1 13 82-94 34-46 (359)
300 1ak2_A Adenylate kinase isoenz 49.7 4.7 0.00016 27.1 0.7 14 79-92 18-31 (233)
301 2o5v_A DNA replication and rep 49.7 4.1 0.00014 30.0 0.4 16 79-94 28-43 (359)
302 1ksh_A ARF-like protein 2; sma 49.4 7.8 0.00027 24.3 1.7 19 75-93 16-34 (186)
303 2ghi_A Transport protein; mult 49.2 3.7 0.00013 28.6 0.1 13 81-93 50-62 (260)
304 1z47_A CYSA, putative ABC-tran 49.0 3.8 0.00013 30.2 0.1 13 82-94 46-58 (355)
305 1mv5_A LMRA, multidrug resista 48.9 4.3 0.00015 27.8 0.4 13 81-93 32-44 (243)
306 2olj_A Amino acid ABC transpor 48.9 3.8 0.00013 28.8 0.1 13 82-94 55-67 (263)
307 2ff7_A Alpha-hemolysin translo 48.9 3.8 0.00013 28.3 0.1 12 82-93 40-51 (247)
308 1g29_1 MALK, maltose transport 48.8 3.8 0.00013 30.3 0.1 13 82-94 34-46 (372)
309 1z63_A Helicase of the SNF2/RA 48.6 6.3 0.00021 29.3 1.3 21 73-95 54-74 (500)
310 3fvq_A Fe(3+) IONS import ATP- 48.6 3.6 0.00012 30.5 -0.1 13 82-94 35-47 (359)
311 1vpl_A ABC transporter, ATP-bi 48.5 3.8 0.00013 28.6 0.1 13 82-94 46-58 (256)
312 3gd7_A Fusion complex of cysti 48.3 2.3 7.9E-05 31.8 -1.1 13 82-94 52-64 (390)
313 2c95_A Adenylate kinase 1; tra 48.2 4.7 0.00016 25.8 0.5 14 79-92 11-24 (196)
314 2pjz_A Hypothetical protein ST 48.2 3.9 0.00013 28.7 0.1 14 81-94 34-47 (263)
315 3qkt_A DNA double-strand break 48.1 7.3 0.00025 27.9 1.5 13 82-94 28-40 (339)
316 2nq2_C Hypothetical ABC transp 48.0 4 0.00014 28.4 0.1 13 82-94 36-48 (253)
317 3cf2_A TER ATPase, transitiona 47.9 10 0.00035 31.1 2.4 34 59-92 215-253 (806)
318 2it1_A 362AA long hypothetical 47.8 4 0.00014 30.1 0.1 13 82-94 34-46 (362)
319 2pze_A Cystic fibrosis transme 47.6 4.1 0.00014 27.8 0.1 12 82-93 39-50 (229)
320 1pjr_A PCRA; DNA repair, DNA r 47.5 3.1 0.00011 33.2 -0.6 19 77-95 24-42 (724)
321 2zu0_C Probable ATP-dependent 47.3 4.1 0.00014 28.5 0.1 13 81-93 50-62 (267)
322 2yv5_A YJEQ protein; hydrolase 47.3 5.8 0.0002 28.1 0.9 14 81-94 169-182 (302)
323 2ihy_A ABC transporter, ATP-bi 47.3 4.1 0.00014 28.8 0.1 13 82-94 52-64 (279)
324 2d2e_A SUFC protein; ABC-ATPas 47.2 4.2 0.00014 28.1 0.1 12 82-93 34-45 (250)
325 3u4q_A ATP-dependent helicase/ 46.8 3.1 0.00011 35.3 -0.7 19 77-95 23-41 (1232)
326 2v9p_A Replication protein E1; 46.8 6.1 0.00021 28.5 0.9 15 79-93 128-142 (305)
327 1v43_A Sugar-binding transport 46.5 4.3 0.00015 30.1 0.1 13 82-94 42-54 (372)
328 2ixe_A Antigen peptide transpo 46.2 4.4 0.00015 28.4 0.1 13 81-93 49-61 (271)
329 2qi9_C Vitamin B12 import ATP- 46.0 4.4 0.00015 28.1 0.1 13 81-93 30-42 (249)
330 1a5t_A Delta prime, HOLB; zinc 45.7 13 0.00043 26.5 2.5 35 55-93 5-40 (334)
331 1w36_B RECB, exodeoxyribonucle 45.7 2.6 9E-05 35.5 -1.3 15 81-95 20-34 (1180)
332 2cbz_A Multidrug resistance-as 45.3 7.7 0.00026 26.5 1.2 13 81-93 35-47 (237)
333 2cdn_A Adenylate kinase; phosp 45.1 6.9 0.00023 25.4 0.9 16 77-92 20-35 (201)
334 1nrj_B SR-beta, signal recogni 44.8 7.1 0.00024 25.3 1.0 20 75-94 10-29 (218)
335 2b6h_A ADP-ribosylation factor 44.6 6.6 0.00023 25.2 0.8 25 69-93 21-45 (192)
336 2olr_A Phosphoenolpyruvate car 44.6 6.9 0.00024 30.7 1.0 15 79-93 243-257 (540)
337 2qt1_A Nicotinamide riboside k 44.5 5.9 0.0002 25.8 0.5 15 79-93 23-37 (207)
338 3tui_C Methionine import ATP-b 43.2 3.3 0.00011 30.8 -1.0 12 82-93 59-70 (366)
339 1ii2_A Phosphoenolpyruvate car 43.2 7.4 0.00025 30.4 0.9 15 79-93 215-229 (524)
340 3bh0_A DNAB-like replicative h 43.1 14 0.00046 26.3 2.3 26 67-92 56-83 (315)
341 3dmq_A RNA polymerase-associat 43.0 6.5 0.00022 32.5 0.6 25 70-94 163-187 (968)
342 3p32_A Probable GTPase RV1496/ 43.0 18 0.0006 26.1 2.9 30 65-94 65-96 (355)
343 1u94_A RECA protein, recombina 42.5 13 0.00043 27.2 2.1 28 67-94 49-80 (356)
344 1xp8_A RECA protein, recombina 42.3 9.7 0.00033 28.0 1.4 27 67-93 60-90 (366)
345 3tqc_A Pantothenate kinase; bi 42.2 11 0.00038 27.3 1.7 16 79-94 94-109 (321)
346 1m7g_A Adenylylsulfate kinase; 41.9 9.6 0.00033 25.0 1.3 16 78-93 26-41 (211)
347 2vl7_A XPD; helicase, unknown 41.7 22 0.00075 27.2 3.4 34 54-93 9-42 (540)
348 3crv_A XPD/RAD3 related DNA he 41.5 19 0.00067 27.5 3.1 33 55-93 6-38 (551)
349 1svi_A GTP-binding protein YSX 41.4 7.7 0.00026 24.5 0.7 17 78-94 24-40 (195)
350 1fzq_A ADP-ribosylation factor 41.2 16 0.00054 23.0 2.2 18 76-93 15-32 (181)
351 1z0f_A RAB14, member RAS oncog 41.1 9 0.00031 23.6 1.0 16 78-93 16-31 (179)
352 3d31_A Sulfate/molybdate ABC t 40.9 3.4 0.00012 30.3 -1.2 13 82-94 31-43 (348)
353 3con_A GTPase NRAS; structural 40.9 9 0.00031 24.1 1.0 15 79-93 23-37 (190)
354 1cr0_A DNA primase/helicase; R 40.9 9 0.00031 26.5 1.0 16 79-94 37-52 (296)
355 3pqc_A Probable GTP-binding pr 40.8 8 0.00027 24.3 0.7 16 79-94 25-40 (195)
356 1tq4_A IIGP1, interferon-induc 40.7 13 0.00046 27.8 2.0 15 80-94 72-86 (413)
357 2r6a_A DNAB helicase, replicat 40.7 15 0.00051 27.4 2.3 27 67-93 191-219 (454)
358 2bbs_A Cystic fibrosis transme 40.6 5.6 0.00019 28.3 -0.1 23 72-94 53-81 (290)
359 2y8e_A RAB-protein 6, GH09086P 40.6 8.5 0.00029 23.7 0.8 15 79-93 16-30 (179)
360 1qhl_A Protein (cell division 40.5 2.1 7.2E-05 29.5 -2.3 12 83-94 33-44 (227)
361 3f9v_A Minichromosome maintena 40.3 10 0.00036 29.6 1.4 15 79-93 329-343 (595)
362 3tw8_B RAS-related protein RAB 40.3 9.2 0.00032 23.6 0.9 15 79-93 11-25 (181)
363 2a9k_A RAS-related protein RAL 40.0 9.5 0.00033 23.6 1.0 16 78-93 19-34 (187)
364 2q6t_A DNAB replication FORK h 39.9 16 0.00054 27.2 2.3 27 67-93 188-216 (444)
365 1f6b_A SAR1; gtpases, N-termin 39.8 17 0.00058 23.3 2.2 18 76-93 24-41 (198)
366 2gno_A DNA polymerase III, gam 39.7 16 0.00054 26.0 2.2 25 69-93 10-34 (305)
367 2wsm_A Hydrogenase expression/ 39.6 11 0.00037 24.5 1.3 16 79-94 32-47 (221)
368 3umf_A Adenylate kinase; rossm 39.3 8.6 0.00029 26.2 0.7 14 79-92 31-44 (217)
369 1ls1_A Signal recognition part 39.2 6.6 0.00022 27.8 0.1 16 79-94 100-115 (295)
370 2bov_A RAla, RAS-related prote 38.8 10 0.00035 24.1 1.0 16 78-93 15-30 (206)
371 2bme_A RAB4A, RAS-related prot 38.7 9.4 0.00032 23.8 0.8 16 78-93 11-26 (186)
372 3lxx_A GTPase IMAP family memb 38.7 6.1 0.00021 26.5 -0.2 18 77-94 29-46 (239)
373 2fn4_A P23, RAS-related protei 38.7 9.4 0.00032 23.5 0.8 17 78-94 10-26 (181)
374 2efe_B Small GTP-binding prote 38.5 10 0.00035 23.5 0.9 17 77-93 12-28 (181)
375 2xtp_A GTPase IMAP family memb 38.4 5.6 0.00019 26.9 -0.4 18 77-94 22-39 (260)
376 3ney_A 55 kDa erythrocyte memb 38.1 12 0.0004 25.2 1.2 14 80-93 22-35 (197)
377 1tf7_A KAIC; homohexamer, hexa 38.1 6.5 0.00022 30.0 -0.1 16 79-94 41-56 (525)
378 3kkq_A RAS-related protein M-R 38.0 11 0.00037 23.5 1.0 17 77-93 18-34 (183)
379 2atv_A RERG, RAS-like estrogen 37.5 15 0.00052 23.3 1.7 18 76-93 27-44 (196)
380 1pui_A ENGB, probable GTP-bind 37.4 11 0.00038 24.1 1.0 16 79-94 28-43 (210)
381 1ypw_A Transitional endoplasmi 37.3 5.6 0.00019 32.3 -0.6 16 78-93 512-527 (806)
382 3zvl_A Bifunctional polynucleo 37.3 10 0.00035 28.1 0.9 17 77-93 258-274 (416)
383 2vp4_A Deoxynucleoside kinase; 37.1 7.6 0.00026 26.0 0.1 14 80-93 23-36 (230)
384 3tlx_A Adenylate kinase 2; str 37.0 9.7 0.00033 25.9 0.7 33 58-92 12-44 (243)
385 2wwf_A Thymidilate kinase, put 36.9 9.1 0.00031 24.7 0.5 14 79-92 12-25 (212)
386 2j9r_A Thymidine kinase; TK1, 36.9 5.8 0.0002 27.3 -0.5 18 79-96 30-47 (214)
387 2j37_W Signal recognition part 36.6 34 0.0012 26.3 3.7 16 79-94 103-118 (504)
388 2rcn_A Probable GTPase ENGC; Y 36.6 10 0.00036 27.9 0.8 14 80-93 218-231 (358)
389 3bc1_A RAS-related protein RAB 36.3 12 0.00041 23.3 1.0 16 78-93 12-27 (195)
390 3ozx_A RNAse L inhibitor; ATP 36.2 5 0.00017 31.1 -1.0 12 83-94 31-42 (538)
391 1u0l_A Probable GTPase ENGC; p 36.0 8 0.00027 27.3 0.1 15 80-94 172-186 (301)
392 1oxx_K GLCV, glucose, ABC tran 35.9 3.4 0.00012 30.3 -1.9 13 82-94 36-48 (353)
393 2yc2_C IFT27, small RAB-relate 35.6 10 0.00036 24.0 0.6 17 78-94 21-37 (208)
394 2oil_A CATX-8, RAS-related pro 35.5 12 0.00042 23.6 1.0 16 78-93 26-41 (193)
395 1eaq_A RUNT-related transcript 35.4 16 0.00054 23.5 1.4 14 82-95 91-104 (140)
396 2ffh_A Protein (FFH); SRP54, s 35.4 8.2 0.00028 29.1 0.1 16 79-94 100-115 (425)
397 1w1w_A Structural maintenance 34.8 14 0.00046 27.3 1.2 14 81-94 30-43 (430)
398 3l0i_B RAS-related protein RAB 34.7 18 0.00061 23.1 1.7 16 78-93 34-49 (199)
399 1yrb_A ATP(GTP)binding protein 34.6 9.6 0.00033 25.6 0.3 17 78-94 15-31 (262)
400 1oix_A RAS-related protein RAB 34.5 12 0.00041 24.0 0.8 17 78-94 30-46 (191)
401 1uj2_A Uridine-cytidine kinase 34.0 12 0.0004 25.4 0.7 15 78-92 23-37 (252)
402 3tkl_A RAS-related protein RAB 34.0 13 0.00046 23.3 1.0 16 78-93 17-32 (196)
403 1z06_A RAS-related protein RAB 34.0 13 0.00046 23.4 1.0 17 77-93 20-36 (189)
404 2il1_A RAB12; G-protein, GDP, 34.0 13 0.00046 23.6 1.0 17 77-93 26-42 (192)
405 2xxa_A Signal recognition part 33.9 10 0.00036 28.5 0.5 17 79-95 102-118 (433)
406 2g6b_A RAS-related protein RAB 33.8 14 0.00047 22.8 1.0 16 78-93 11-26 (180)
407 1nn5_A Similar to deoxythymidy 33.7 11 0.00038 24.3 0.5 15 79-93 11-25 (215)
408 1x3s_A RAS-related protein RAB 33.5 14 0.00048 23.1 1.0 15 79-93 17-31 (195)
409 2h57_A ADP-ribosylation factor 33.4 13 0.00044 23.5 0.8 16 78-93 22-37 (190)
410 1z3i_X Similar to RAD54-like; 33.1 22 0.00075 27.8 2.2 21 74-95 77-97 (644)
411 4e22_A Cytidylate kinase; P-lo 33.1 15 0.00053 25.0 1.2 15 79-93 29-43 (252)
412 2p5s_A RAS and EF-hand domain 33.0 14 0.00049 23.5 1.0 17 77-93 28-44 (199)
413 3r20_A Cytidylate kinase; stru 33.0 15 0.00053 25.2 1.2 15 79-93 11-25 (233)
414 1h65_A Chloroplast outer envel 32.9 55 0.0019 22.2 4.1 17 77-93 39-55 (270)
415 2orv_A Thymidine kinase; TP4A 32.6 7.5 0.00026 27.2 -0.5 18 79-96 21-38 (234)
416 2a5j_A RAS-related protein RAB 32.6 15 0.0005 23.3 1.0 16 78-93 22-37 (191)
417 2yl4_A ATP-binding cassette SU 32.6 13 0.00046 28.7 0.9 12 82-93 375-386 (595)
418 3j16_B RLI1P; ribosome recycli 32.6 6.3 0.00022 31.1 -1.0 12 83-94 109-120 (608)
419 3lda_A DNA repair protein RAD5 31.9 15 0.00051 27.3 1.0 29 67-95 165-196 (400)
420 3qf4_B Uncharacterized ABC tra 31.7 14 0.00047 28.7 0.8 13 81-93 385-397 (598)
421 2qag_B Septin-6, protein NEDD5 31.7 15 0.0005 27.8 1.0 22 72-93 37-58 (427)
422 3cph_A RAS-related protein SEC 31.6 16 0.00053 23.4 1.0 16 78-93 21-36 (213)
423 2gf9_A RAS-related protein RAB 31.6 16 0.00054 23.0 1.0 16 78-93 23-38 (189)
424 3nh6_A ATP-binding cassette SU 31.5 6.2 0.00021 28.4 -1.1 12 82-93 85-96 (306)
425 3euj_A Chromosome partition pr 31.4 10 0.00036 29.1 0.1 15 80-94 32-46 (483)
426 2o52_A RAS-related protein RAB 31.3 15 0.0005 23.6 0.8 16 78-93 26-41 (200)
427 2obl_A ESCN; ATPase, hydrolase 31.2 6.7 0.00023 28.6 -1.0 21 72-94 68-88 (347)
428 2hf9_A Probable hydrogenase ni 31.2 40 0.0014 21.8 3.0 15 79-93 40-54 (226)
429 2x77_A ADP-ribosylation factor 31.2 25 0.00086 22.0 1.9 18 76-93 21-38 (189)
430 2qu8_A Putative nucleolar GTP- 31.1 16 0.00054 24.0 1.0 17 77-93 29-45 (228)
431 2h17_A ADP-ribosylation factor 31.0 12 0.00043 23.4 0.4 16 78-93 22-37 (181)
432 2fg5_A RAB-22B, RAS-related pr 30.8 15 0.00051 23.3 0.8 17 77-93 23-39 (192)
433 1zd9_A ADP-ribosylation factor 30.7 16 0.00056 23.0 1.0 16 78-93 23-38 (188)
434 2grj_A Dephospho-COA kinase; T 30.7 16 0.00055 24.1 0.9 15 78-92 13-27 (192)
435 3c5c_A RAS-like protein 12; GD 30.6 16 0.00056 23.1 1.0 18 77-94 21-38 (187)
436 1g5t_A COB(I)alamin adenosyltr 30.5 7.9 0.00027 26.3 -0.7 20 77-96 28-47 (196)
437 2q3h_A RAS homolog gene family 30.5 17 0.00057 23.1 1.0 16 78-93 21-36 (201)
438 1z6t_A APAF-1, apoptotic prote 30.4 48 0.0017 25.0 3.7 19 75-93 145-163 (591)
439 4bas_A ADP-ribosylation factor 30.4 17 0.00056 22.9 0.9 17 77-93 17-33 (199)
440 4aby_A DNA repair protein RECN 30.3 3.8 0.00013 29.8 -2.4 14 81-94 64-77 (415)
441 3nwj_A ATSK2; P loop, shikimat 30.2 15 0.0005 25.5 0.7 19 73-93 46-64 (250)
442 3lxw_A GTPase IMAP family memb 30.1 10 0.00035 25.8 -0.1 18 77-94 21-38 (247)
443 3io5_A Recombination and repai 30.0 15 0.00053 27.0 0.8 15 79-93 30-44 (333)
444 2qm8_A GTPase/ATPase; G protei 29.9 27 0.00091 25.1 2.1 17 78-94 56-72 (337)
445 1zcb_A G alpha I/13; GTP-bindi 29.9 15 0.00051 26.9 0.7 17 77-93 33-49 (362)
446 3cf2_A TER ATPase, transitiona 29.8 12 0.0004 30.8 0.1 14 79-92 513-526 (806)
447 2fv8_A H6, RHO-related GTP-bin 29.7 16 0.00054 23.5 0.8 17 77-93 25-41 (207)
448 3t1o_A Gliding protein MGLA; G 29.6 18 0.00061 22.6 1.0 15 78-92 15-29 (198)
449 3dz8_A RAS-related protein RAB 29.4 16 0.00056 23.0 0.8 15 78-92 24-38 (191)
450 2dpy_A FLII, flagellum-specifi 29.3 17 0.00059 27.3 1.0 21 72-94 154-174 (438)
451 2npi_A Protein CLP1; CLP1-PCF1 29.3 10 0.00034 28.8 -0.3 19 74-94 137-155 (460)
452 4a82_A Cystic fibrosis transme 29.2 12 0.00042 28.9 0.1 12 82-93 372-383 (578)
453 1lw7_A Transcriptional regulat 29.2 11 0.00038 27.1 -0.1 16 79-94 172-187 (365)
454 1tf5_A Preprotein translocase 29.1 23 0.00078 29.3 1.7 19 71-93 94-112 (844)
455 4akg_A Glutathione S-transfera 28.9 18 0.00063 33.6 1.2 17 77-93 923-939 (2695)
456 3gj0_A GTP-binding nuclear pro 28.9 17 0.00057 23.6 0.8 17 77-93 15-31 (221)
457 1m2o_B GTP-binding protein SAR 28.9 17 0.00058 23.1 0.8 15 79-93 25-39 (190)
458 2f6r_A COA synthase, bifunctio 28.9 14 0.00049 25.7 0.5 16 78-93 76-91 (281)
459 1ny5_A Transcriptional regulat 28.5 15 0.00052 26.8 0.6 19 74-92 157-175 (387)
460 4djt_A GTP-binding nuclear pro 28.5 19 0.00064 23.2 1.0 16 77-92 11-26 (218)
461 3cmu_A Protein RECA, recombina 28.4 17 0.00058 33.0 0.9 26 69-94 1415-1444(2050)
462 4f92_B U5 small nuclear ribonu 28.3 35 0.0012 30.3 2.8 24 68-92 934-957 (1724)
463 3reg_A RHO-like small GTPase; 28.1 20 0.00067 22.7 1.0 15 78-92 24-38 (194)
464 1q3t_A Cytidylate kinase; nucl 28.0 22 0.00076 23.7 1.3 14 80-93 19-32 (236)
465 3oes_A GTPase rhebl1; small GT 27.9 18 0.00062 23.1 0.8 15 78-92 25-39 (201)
466 3th5_A RAS-related C3 botulinu 34.0 13 0.00043 23.9 0.0 18 77-94 30-47 (204)
467 2axn_A 6-phosphofructo-2-kinas 27.9 18 0.00062 27.7 0.9 16 77-92 35-50 (520)
468 3b5x_A Lipid A export ATP-bind 27.8 14 0.00047 28.6 0.2 12 82-93 374-385 (582)
469 2j1l_A RHO-related GTP-binding 27.8 18 0.00062 23.5 0.8 17 77-93 34-50 (214)
470 3szr_A Interferon-induced GTP- 27.7 8.4 0.00029 30.2 -1.0 15 80-94 48-62 (608)
471 2gco_A H9, RHO-related GTP-bin 27.6 18 0.00063 23.1 0.8 17 77-93 25-41 (201)
472 2atx_A Small GTP binding prote 27.5 18 0.00063 22.7 0.8 16 78-93 19-34 (194)
473 3cmw_A Protein RECA, recombina 27.2 24 0.00082 31.4 1.6 26 67-92 20-49 (1706)
474 3bgw_A DNAB-like replicative h 27.2 32 0.0011 25.8 2.1 27 67-93 185-213 (444)
475 3def_A T7I23.11 protein; chlor 27.2 45 0.0015 22.6 2.8 17 77-93 36-52 (262)
476 1bif_A 6-phosphofructo-2-kinas 27.1 19 0.00066 26.9 0.9 19 75-93 37-55 (469)
477 3bk7_A ABC transporter ATP-bin 27.1 8.9 0.0003 30.2 -1.0 14 81-94 121-134 (607)
478 2f7s_A C25KG, RAS-related prot 27.0 21 0.0007 23.0 1.0 15 78-92 26-40 (217)
479 1yqt_A RNAse L inhibitor; ATP- 27.0 14 0.00047 28.5 0.1 13 82-94 52-64 (538)
480 3ihw_A Centg3; RAS, centaurin, 27.0 20 0.0007 22.6 0.9 18 77-94 20-37 (184)
481 3b60_A Lipid A export ATP-bind 26.8 13 0.00045 28.7 -0.1 12 82-93 374-385 (582)
482 1gwn_A RHO-related GTP-binding 26.6 20 0.00067 23.3 0.8 18 76-93 27-44 (205)
483 4akg_A Glutathione S-transfera 26.5 20 0.00067 33.4 1.0 26 68-94 1259-1284(2695)
484 3vkw_A Replicase large subunit 26.5 12 0.0004 28.6 -0.4 17 79-95 163-179 (446)
485 2e87_A Hypothetical protein PH 26.4 14 0.0005 26.5 0.1 18 77-94 167-184 (357)
486 3llu_A RAS-related GTP-binding 26.4 20 0.00069 22.8 0.8 16 78-93 21-36 (196)
487 3ux8_A Excinuclease ABC, A sub 26.1 15 0.0005 28.9 0.1 23 72-94 337-365 (670)
488 3qf4_A ABC transporter, ATP-bi 25.8 15 0.00053 28.5 0.2 13 82-94 374-386 (587)
489 2ew1_A RAS-related protein RAB 25.5 21 0.00072 23.1 0.8 17 78-94 27-43 (201)
490 3cpj_B GTP-binding protein YPT 24.8 24 0.00081 23.0 1.0 16 78-93 14-29 (223)
491 4gzl_A RAS-related C3 botulinu 24.8 29 0.00099 22.3 1.4 20 75-94 28-47 (204)
492 2hup_A RAS-related protein RAB 24.1 23 0.00079 22.7 0.8 16 78-93 30-45 (201)
493 3cbq_A GTP-binding protein REM 24.0 26 0.00087 22.4 1.0 17 77-93 23-39 (195)
494 2www_A Methylmalonic aciduria 23.9 17 0.00058 26.2 0.1 16 79-94 76-91 (349)
495 1pfs_A PF3 SSDBP, PF3 single-s 23.8 26 0.00089 20.3 0.8 14 82-95 12-25 (78)
496 1q57_A DNA primase/helicase; d 23.8 23 0.00078 26.7 0.8 26 68-93 231-258 (503)
497 4f4c_A Multidrug resistance pr 23.7 23 0.00077 30.4 0.8 22 72-93 1094-1121(1321)
498 2j0v_A RAC-like GTP-binding pr 23.5 24 0.00083 22.5 0.8 17 77-93 9-25 (212)
499 1ytm_A Phosphoenolpyruvate car 23.1 28 0.00097 27.2 1.2 14 79-92 237-250 (532)
500 2p67_A LAO/AO transport system 23.0 17 0.00057 26.1 -0.1 17 78-94 57-73 (341)
No 1
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=99.94 E-value=8.1e-28 Score=180.46 Aligned_cols=88 Identities=44% Similarity=0.827 Sum_probs=70.7
Q ss_pred cccCCEEEEecCCCC-----CCCCCceEEeceEEecCCCC-CCCCCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCC
Q psy12526 16 QVRKQTTYLTGTGRS-----HLKPPKTFAFDHCFYSLDPN-LPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEK 89 (103)
Q Consensus 16 ~~~~~~~~~~~~~~~-----~~~~~~~F~fd~vf~s~~~~-~~~~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSG 89 (103)
.+.++.+++..+... ....++.|.||+|||+.|.. ..+.++|++||+.++.|+|+.+++|||+|||||||||||
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~k~F~FD~vF~~~d~~~~~~~a~Q~~vy~~~~~~lv~~~l~G~n~tifAYGqTGSG 105 (354)
T 3gbj_A 26 DVDANKVILNPVNTNLSKGDARGQPKVFAYDHCFWSMDESVKEKYAGQDIVFKCLGENILQNAFDGYNACIFAYGQTGSG 105 (354)
T ss_dssp EEETTEEEECCC-----------CCEEEECSEEEECSCTTCTTTBCCHHHHHHHHHHHHHHHHHTTCCEEEEEEECTTSS
T ss_pred EeCCCeEEEeCCccccccccccCCceEEEeeEEeccCccccccccccHHHHHHHhhHHHHHHHhCCceeEEEeeCCCCCC
Confidence 344556665544321 22357899999999988743 356789999999999999999999999999999999999
Q ss_pred CceEeccCCCCCCC
Q psy12526 90 TNYLLNGNGPFPLI 103 (103)
Q Consensus 90 KT~Tm~G~~~~pGi 103 (103)
|||||+|+.+++||
T Consensus 106 KTyTm~G~~~~~Gi 119 (354)
T 3gbj_A 106 KSYTMMGTADQPGL 119 (354)
T ss_dssp HHHHHTBCSSSBCH
T ss_pred CceEEecCCCCCch
Confidence 99999999999996
No 2
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=99.94 E-value=1.3e-27 Score=183.69 Aligned_cols=70 Identities=43% Similarity=0.861 Sum_probs=65.2
Q ss_pred CCceEEeceEEecCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEeccCCCCCCC
Q psy12526 34 PPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLNGNGPFPLI 103 (103)
Q Consensus 34 ~~~~F~fd~vf~s~~~~~~~~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~G~~~~pGi 103 (103)
..+.|+||+|||+++....+.++|++||+.++.|+|+.+++|||+||||||||||||||||+|..+++||
T Consensus 94 ~~~~F~FD~vF~~~~~~~~~~asQ~~Vy~~~~~plv~~~l~GyN~tIfAYGQTGSGKTyTM~G~~~~~GI 163 (443)
T 2owm_A 94 EEKSFTFDKSFWSHNTEDEHYATQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTMMGTPDQPGL 163 (443)
T ss_dssp CCEEEECSEEEEESCTTSTTCCCHHHHHHHHHHHHHHHHHTTCCEEEEEESSTTSSHHHHHTCCTTSCCH
T ss_pred CCceEecCeEeCCCCcCCccCCCHHHHHHhhhhhHHHHhhcCCceEEEEeCCCCCCCCEEeecCCCCCch
Confidence 3689999999998776666789999999999999999999999999999999999999999999999996
No 3
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=99.94 E-value=1.1e-27 Score=179.60 Aligned_cols=63 Identities=33% Similarity=0.629 Sum_probs=59.6
Q ss_pred CCceEEeceEEecCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEeccCCCCCCC
Q psy12526 34 PPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLNGNGPFPLI 103 (103)
Q Consensus 34 ~~~~F~fd~vf~s~~~~~~~~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~G~~~~pGi 103 (103)
..+.|.||+||+ +.++|++||+.++.|+|+.+++|||+||||||||||||||||+|..+++||
T Consensus 54 ~~~~f~FD~Vf~-------~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~Gi 116 (350)
T 2vvg_A 54 VPRTFTFDAVYD-------QTSCNYGIFQASFKPLIDAVLEGFNSTIFAYGQTGAGKTWTMGGNKEEPGA 116 (350)
T ss_dssp --EEEECSEEEC-------TTCCHHHHHHHTTHHHHHHHHTTCCEEEEEECSTTSSHHHHHTBCSSSBCH
T ss_pred CceEeeCCEEEC-------CCcchhHHHHHHHHHHHHHHhCCCceeEEeecCCCCCCCEEeecCCccCch
Confidence 468999999999 899999999999999999999999999999999999999999999999996
No 4
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=99.94 E-value=4.3e-27 Score=176.81 Aligned_cols=62 Identities=32% Similarity=0.605 Sum_probs=56.2
Q ss_pred CCceEEeceEEecCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEeccCCC---CCCC
Q psy12526 34 PPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLNGNGP---FPLI 103 (103)
Q Consensus 34 ~~~~F~fd~vf~s~~~~~~~~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~G~~~---~pGi 103 (103)
..+.|.||+||+ + ++|++||+.+++|+|+++++|||+||||||||||||||||+|... ++||
T Consensus 70 ~~~~F~FD~Vf~-------~-~sQ~~Vy~~~~~plv~~~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~Gi 134 (359)
T 3nwn_A 70 TDWSFKLDGVLH-------D-ASQDLVYETVAKDVVSQALDGYNGTIMCYGQTGAGKTYTMMGATENYKHRGI 134 (359)
T ss_dssp CEEEEECSEEEE-------S-CCHHHHHHHHTHHHHHHHHTTCCEEEEEEESTTSSHHHHHTBCSSCGGGBCH
T ss_pred CceEeecCccCC-------C-CCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCCCCCccEEeCCccCCccchhh
Confidence 457899999996 3 789999999999999999999999999999999999999999754 4675
No 5
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=99.94 E-value=7.2e-27 Score=175.96 Aligned_cols=85 Identities=39% Similarity=0.718 Sum_probs=67.6
Q ss_pred cCCEEEEecCCCCCCCCCceEEeceEEecCC-CCCCCCCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEecc
Q psy12526 18 RKQTTYLTGTGRSHLKPPKTFAFDHCFYSLD-PNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLNG 96 (103)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~F~fd~vf~s~~-~~~~~~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~G 96 (103)
.++.+++..|.. .....+.|+||+|||+.. ...+..++|++||+.+++|+|+.+++|||+||||||||||||||||+|
T Consensus 31 ~~~~~~i~~~~~-~~~~~~~f~FD~vf~~~~~~~~~~~asQ~~Vy~~~~~plv~~~l~G~N~tifAYGqTGSGKTyTm~G 109 (366)
T 2zfi_A 31 SGSTTTIVNPKQ-PKETPKSFSFDYSYWSHTSPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMG 109 (366)
T ss_dssp ETTEEEECCTTC-TTSCCEEEECSEEEECSSCTTSSSCCCHHHHHHHTHHHHHHHHHTTCCEEEEEECSTTSSHHHHHTB
T ss_pred CCCcEEEeccCC-CCCCceEEecceEeecCccccccccCcHHHHHHHHHHHHHHHHhcCCeeEEEEeCCCCCCCceEeeC
Confidence 344555544433 223568999999999653 333445899999999999999999999999999999999999999999
Q ss_pred CC--CCCCC
Q psy12526 97 NG--PFPLI 103 (103)
Q Consensus 97 ~~--~~pGi 103 (103)
.. +++||
T Consensus 110 ~~~~~~~Gi 118 (366)
T 2zfi_A 110 KQEKDQQGI 118 (366)
T ss_dssp CSGGGCBCH
T ss_pred CCccCCCcc
Confidence 84 46775
No 6
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=99.93 E-value=4.7e-27 Score=176.38 Aligned_cols=63 Identities=30% Similarity=0.528 Sum_probs=60.3
Q ss_pred CCceEEeceEEecCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEeccCCCCCCC
Q psy12526 34 PPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLNGNGPFPLI 103 (103)
Q Consensus 34 ~~~~F~fd~vf~s~~~~~~~~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~G~~~~pGi 103 (103)
..+.|.||+||+ +.++|++||+.++.|+|+.+++|||+||||||||||||||||+|+.++|||
T Consensus 70 ~~~~F~FD~vf~-------~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~Gi 132 (355)
T 3lre_A 70 KDLKFVFDAVFD-------ETSTQSEVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTMLGSADEPGV 132 (355)
T ss_dssp CCEEEECSEEEC-------TTCCHHHHHHTTHHHHHHHHTTTCCEEEEEECCTTSSHHHHHTBCSSSBCH
T ss_pred CCceEEeceEEC-------CCCChHHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCceeeeccCCCCCCe
Confidence 356899999999 899999999999999999999999999999999999999999999999996
No 7
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=99.93 E-value=6.8e-27 Score=175.20 Aligned_cols=63 Identities=35% Similarity=0.638 Sum_probs=60.5
Q ss_pred CCceEEeceEEecCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEeccCCCCCCC
Q psy12526 34 PPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLNGNGPFPLI 103 (103)
Q Consensus 34 ~~~~F~fd~vf~s~~~~~~~~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~G~~~~pGi 103 (103)
..+.|.||+||| +.++|++||+.++.|+|+.+++|||+||||||||||||||||+|..+++||
T Consensus 42 ~~~~F~FD~Vf~-------~~~tQ~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTM~G~~~~~Gi 104 (349)
T 1t5c_A 42 GSKSFNFDRVFH-------GNETTKNVYEEIAAPIIDSAIQGYNGTIFAYGQTASGKTYTMMGSEDHLGV 104 (349)
T ss_dssp SSCEEECSCEEC-------TTSCHHHHHHHTTHHHHHHHHTTCCEEEEEEESTTSSHHHHHTBCSSSBCH
T ss_pred CCeEEECCEEEC-------CCCCHHHHHHHHHHHHHHHHHcCCccceeeecCCCCCCCeEEecCCCCCch
Confidence 458999999999 899999999999999999999999999999999999999999999999996
No 8
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=99.93 E-value=1e-26 Score=175.44 Aligned_cols=77 Identities=31% Similarity=0.475 Sum_probs=65.2
Q ss_pred CEEEEecCCCCCCCCCceEEeceEEecCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEeccCCC
Q psy12526 20 QTTYLTGTGRSHLKPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLNGNGP 99 (103)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~F~fd~vf~s~~~~~~~~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~G~~~ 99 (103)
+++.+..|........+.|.||+||+ +.++|++||+.+++|+|+.+++|||+||||||||||||||||+|...
T Consensus 52 ~~v~v~~~~~~~~~~~~~F~FD~Vf~-------~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTM~G~~~ 124 (372)
T 3b6u_A 52 GQVSVKNPKGTAHEMPKTFTFDAVYD-------WNAKQFELYDETFRPLVDSVLQGFNGTIFAYGQTGTGKTYTMEGIRG 124 (372)
T ss_dssp TEEEECCTTCTTTCCCEEEECSEEEC-------TTCCHHHHHHHTHHHHHHHHHTTCCEEEEEEESTTSSHHHHHTBCTT
T ss_pred CEEEEECCCCCCCCCceEEEcCeEeC-------CcCchHHHHHHHHHHHHHHHhCCCeeeEEeecCCCCCCCEeEecCCC
Confidence 45555555443344578999999999 89999999999999999999999999999999999999999999754
Q ss_pred ---CCCC
Q psy12526 100 ---FPLI 103 (103)
Q Consensus 100 ---~pGi 103 (103)
++||
T Consensus 125 ~~~~~Gi 131 (372)
T 3b6u_A 125 DPEKRGV 131 (372)
T ss_dssp SGGGBCH
T ss_pred CcccCCc
Confidence 4464
No 9
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=99.93 E-value=7.6e-27 Score=174.57 Aligned_cols=64 Identities=33% Similarity=0.518 Sum_probs=58.4
Q ss_pred CCCceEEeceEEecCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEeccC------CCCCCC
Q psy12526 33 KPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLNGN------GPFPLI 103 (103)
Q Consensus 33 ~~~~~F~fd~vf~s~~~~~~~~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~G~------~~~pGi 103 (103)
...+.|.||+||+ +.++|++||+.++.|+|+.+++|||+||||||||||||||||+|. .+++||
T Consensus 47 ~~~~~f~FD~Vf~-------~~~~Q~~vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~~~~Gi 116 (344)
T 4a14_A 47 GRDRHFGFHVVLA-------EDAGQEAVYQACVQPLLEAFFEGFNATVFAYGQTGSGKTYTMGEASVASLLEDEQGI 116 (344)
T ss_dssp TTTEEEECSEEEC-------TTCCHHHHHHHHTHHHHHHHHTTCCEEEEEESSTTSSHHHHHCC--------CCCCH
T ss_pred cccceEEEEEEEe-------cCcchhHHHHHHHHHHHHHHHhhcCeeEEEecccCCCceEeecccchhhhhhcccCC
Confidence 3568999999999 899999999999999999999999999999999999999999997 367785
No 10
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=99.93 E-value=1.2e-26 Score=174.19 Aligned_cols=63 Identities=32% Similarity=0.545 Sum_probs=58.5
Q ss_pred CCceEEeceEEecCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEeccC----CCCCCC
Q psy12526 34 PPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLNGN----GPFPLI 103 (103)
Q Consensus 34 ~~~~F~fd~vf~s~~~~~~~~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~G~----~~~pGi 103 (103)
..+.|.||+||+ +.++|++||+.++.|+|+.+++|||+||||||||||||||||+|. .+++||
T Consensus 45 ~~~~f~FD~Vf~-------~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~~Gi 111 (355)
T 1goj_A 45 AQGSFTFDRVFD-------MSCKQSDIFDFSIKPTVDDILNGYNGTVFAYGQTGAGKSYTMMGTSIDDPDGRGV 111 (355)
T ss_dssp CCEEEECSEEEC-------TTCCHHHHHHHHTHHHHHHHTTTCCEEEEEECSTTSSHHHHHTBSCTTSTTTBCH
T ss_pred CccEEeeCeEEC-------CCCccHHHHHHHHHHHHHHHhCCCcceEEEECCCCCCcceEeecCCCCCcccCCc
Confidence 468999999999 899999999999999999999999999999999999999999996 356775
No 11
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=99.93 E-value=4.3e-27 Score=178.27 Aligned_cols=63 Identities=24% Similarity=0.430 Sum_probs=60.3
Q ss_pred CCceEEeceEEecCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEeccCCCCCCC
Q psy12526 34 PPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLNGNGPFPLI 103 (103)
Q Consensus 34 ~~~~F~fd~vf~s~~~~~~~~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~G~~~~pGi 103 (103)
..+.|.||+||+ +.++|++||+.++.|+|+.+++|||+||||||||||||||||+|+.+++||
T Consensus 63 ~~~~f~FD~Vf~-------~~~tQ~~Vy~~~~~plv~~~l~G~N~tifAYGqTGSGKTyTM~G~~~~~Gi 125 (388)
T 3bfn_A 63 ETLKYQFDAFYG-------ERSTQQDIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTHTMLGSPEQPGV 125 (388)
T ss_dssp CEEEEECSEEEC-------TTCCHHHHHHHHTGGGHHHHTTTCCEEEEEESCTTSSHHHHHTBCSSSBCH
T ss_pred CeeEEEcceEec-------CCCCHhHHHHHHHHHHHHHhhcCceeeEeeecCCCCCCCeEeecCccccch
Confidence 357899999999 899999999999999999999999999999999999999999999999996
No 12
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=99.93 E-value=6.4e-27 Score=173.91 Aligned_cols=60 Identities=37% Similarity=0.661 Sum_probs=56.7
Q ss_pred CceEEeceEEecCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEeccCCCCC
Q psy12526 35 PKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLNGNGPFP 101 (103)
Q Consensus 35 ~~~F~fd~vf~s~~~~~~~~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~G~~~~p 101 (103)
.+.|.||+||+ +.++|++||+.+++|+|+.+++|||+||||||||||||||||+|...+|
T Consensus 43 ~~~f~FD~Vf~-------~~~sQ~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~ 102 (325)
T 1bg2_A 43 SKPYAFDRVFQ-------SSTSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDP 102 (325)
T ss_dssp TEEEECSEEEC-------TTCCHHHHHHHHTHHHHHHHHTTCCEEEEEECSTTSSHHHHHTBSTTCT
T ss_pred CEEEECCeEeC-------CCCCHHHHHHHHhhhhHHHHhCCCeEEEEEECCCCCCCceEecccCCCc
Confidence 58999999999 8999999999999999999999999999999999999999999986554
No 13
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=99.93 E-value=6e-27 Score=175.22 Aligned_cols=63 Identities=30% Similarity=0.508 Sum_probs=58.1
Q ss_pred CCceEEeceEEecCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEeccCC------CCCCC
Q psy12526 34 PPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLNGNG------PFPLI 103 (103)
Q Consensus 34 ~~~~F~fd~vf~s~~~~~~~~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~G~~------~~pGi 103 (103)
..+.|.||+||+ +.++|++||+.++.|+|+.+++|||+||||||||||||||||.|.. +++||
T Consensus 59 ~~~~F~FD~Vf~-------~~~sQ~~Vy~~~~~plv~~~l~G~N~tifAYGQTGSGKTyTM~g~~~~~~~~~~~GI 127 (344)
T 3dc4_A 59 DQNEFHFDHAFP-------ATISQDEMYQALILPLVDKLLEGFQCTALAYGQTGTGKSYSMGMTPPGEILPEHLGI 127 (344)
T ss_dssp TTEEEECSEEEC-------TTCCHHHHHHHHTHHHHHHHHHTCCEEEEEESSTTSSHHHHHTCSCGGGSCGGGCCH
T ss_pred cCcEEEcceEEC-------CCCCHHHHHHhhccchhhHhhCCCceEEEEecCCCCCCCeEEcCCCCCCCCcccCCc
Confidence 358999999999 8999999999999999999999999999999999999999999874 45675
No 14
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=99.92 E-value=2.8e-26 Score=173.09 Aligned_cols=59 Identities=32% Similarity=0.580 Sum_probs=56.2
Q ss_pred CCceEEeceEEecCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEeccCCC
Q psy12526 34 PPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLNGNGP 99 (103)
Q Consensus 34 ~~~~F~fd~vf~s~~~~~~~~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~G~~~ 99 (103)
..+.|.||+||+ +.++|++||+.++.|+|+.+++|||+||||||||||||||||+|...
T Consensus 65 ~~~~F~FD~vf~-------~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~ 123 (373)
T 2wbe_C 65 LTKKFTFDRSFG-------PESKQCDVYSVVVSPLIEEVLNGYNCTVFAYGQTGTGKTHTMVGNET 123 (373)
T ss_dssp TCEEEECSEEEC-------TTCCHHHHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHTBSCS
T ss_pred CceEEeccEEec-------cccchhHHHHHHHHHHHHHHhCCceEEEEeecCCCCCcceecccCcc
Confidence 468999999999 89999999999999999999999999999999999999999999764
No 15
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=99.92 E-value=2e-26 Score=171.54 Aligned_cols=62 Identities=39% Similarity=0.763 Sum_probs=58.6
Q ss_pred CCceEEeceEEecCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEeccCCCCCCC
Q psy12526 34 PPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLNGNGPFPLI 103 (103)
Q Consensus 34 ~~~~F~fd~vf~s~~~~~~~~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~G~~~~pGi 103 (103)
..+.|.||+||+ +.++|++||+.+ .|+|+.+++|||+||||||||||||||||+|..++|||
T Consensus 46 ~~~~f~FD~Vf~-------~~~~Q~~Vy~~v-~~lv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~Gi 107 (330)
T 2h58_A 46 KPVSFELDKVFS-------PQASQQDVFQEV-QALVTSCIDGFNVCIFAYGQTGAGKTYTMEGTAENPGI 107 (330)
T ss_dssp EEEEEECSEEEC-------TTCCHHHHHTTT-HHHHHHHHTTCCEEEEEESSTTSSHHHHHTBCSSSBCH
T ss_pred CeeEEecCeEeC-------CCCCcHhHHHHH-HHHHHHHhCCCEEEEEeECCCCCCCcEEEecCCCCCcH
Confidence 457999999999 899999999984 89999999999999999999999999999999999996
No 16
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=99.92 E-value=1.7e-26 Score=175.04 Aligned_cols=62 Identities=34% Similarity=0.532 Sum_probs=54.3
Q ss_pred CceEEeceEEecCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEeccC------CCCCCC
Q psy12526 35 PKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLNGN------GPFPLI 103 (103)
Q Consensus 35 ~~~F~fd~vf~s~~~~~~~~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~G~------~~~pGi 103 (103)
.+.|.||+||+ +.++|++||+.+++|+|+.+++|||+||||||||||||||||+|+ ..++||
T Consensus 100 ~~~F~FD~VF~-------~~~sQ~~Vy~~~~~plv~~~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~~~~Gi 167 (387)
T 2heh_A 100 NQAFCFDFAFD-------ETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKAQNASKGI 167 (387)
T ss_dssp EEEEECSEEEC-------TTCCHHHHHHHTTHHHHHHHHTTCEEEEEEESCTTSSHHHHHC-----------CCH
T ss_pred ccEEeeeEEEe-------cCCCceeehhhhHHHHHHHHhcCCceEEEEecCCCCCCCeEeccCCCCCCcccCCce
Confidence 47899999999 899999999999999999999999999999999999999999996 346675
No 17
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=99.92 E-value=2.2e-26 Score=175.38 Aligned_cols=56 Identities=36% Similarity=0.607 Sum_probs=54.0
Q ss_pred CceEEeceEEecCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEeccC
Q psy12526 35 PKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLNGN 97 (103)
Q Consensus 35 ~~~F~fd~vf~s~~~~~~~~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~G~ 97 (103)
.+.|.||+||+ +.++|++||+.++.|||+.+++|||+||||||||||||||||+|+
T Consensus 120 ~~~F~FD~VF~-------~~~tQ~~Vy~~~~~plV~~~l~G~N~tifAYGQTGSGKTyTM~G~ 175 (410)
T 1v8k_A 120 NQAFCFDFAFD-------ETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGD 175 (410)
T ss_dssp EEEEECSEEEC-------TTCCHHHHHHHTTHHHHHHHHTTCEEEEEEEESTTSSHHHHHHCB
T ss_pred ceEEeeeEEEe-------cCCChhhhhHHHHHHHHHHHhcCCceeEEeecCCCCCCCeEeecC
Confidence 47899999999 899999999999999999999999999999999999999999996
No 18
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=99.92 E-value=5.3e-26 Score=173.44 Aligned_cols=61 Identities=36% Similarity=0.716 Sum_probs=57.6
Q ss_pred CceEEeceEEecCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEeccCCCCCCC
Q psy12526 35 PKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLNGNGPFPLI 103 (103)
Q Consensus 35 ~~~F~fd~vf~s~~~~~~~~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~G~~~~pGi 103 (103)
.+.|.||+||+ +.++|++||+. +.|+|+.+++|||+||||||||||||||||+|..+++||
T Consensus 105 ~~~F~FD~VF~-------~~~~Q~~Vf~~-v~plv~~~l~G~n~tifAYGqTGSGKTyTM~G~~~~~Gi 165 (412)
T 3u06_A 105 QQIFSFDQVFH-------PLSSQSDIFEM-VSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPESVGV 165 (412)
T ss_dssp CCEEECSEEEC-------TTCCHHHHHTT-THHHHHHHHTTCCEEEEEESSTTSSHHHHHTEETTEECH
T ss_pred ceEEeeCeEcC-------CCCCHHHHHHH-HHHHHHHHHCCCceEEEEecCCCCCCeeEecCCCCCCcc
Confidence 57899999999 89999999985 569999999999999999999999999999999999986
No 19
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=99.92 E-value=4e-26 Score=171.51 Aligned_cols=59 Identities=37% Similarity=0.637 Sum_probs=55.9
Q ss_pred CCceEEeceEEecCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEeccCCC
Q psy12526 34 PPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLNGNGP 99 (103)
Q Consensus 34 ~~~~F~fd~vf~s~~~~~~~~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~G~~~ 99 (103)
..+.|.||+||+ +.++|++||+.++.|+|+.+++|||+||||||||||||||||+|...
T Consensus 53 ~~~~f~FD~Vf~-------~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTM~G~~~ 111 (359)
T 1x88_A 53 SRKTYTFDMVFG-------ASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERS 111 (359)
T ss_dssp EEEEEECSEEEC-------TTCCHHHHHHHHHHHHHHHHHTTCEEEEEEEECTTSSHHHHHTBCCC
T ss_pred CceEEeceEEEe-------ccCchhHHHHHHHHHhHHHHhCCCceEEEEeCCCCCCCceEEeccCC
Confidence 358999999999 89999999999999999999999999999999999999999999754
No 20
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=99.92 E-value=5.6e-26 Score=171.07 Aligned_cols=62 Identities=37% Similarity=0.548 Sum_probs=57.5
Q ss_pred CceEEeceEEecCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEeccCCC---CCCC
Q psy12526 35 PKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLNGNGP---FPLI 103 (103)
Q Consensus 35 ~~~F~fd~vf~s~~~~~~~~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~G~~~---~pGi 103 (103)
.+.|.||+||+ +.++|++||+.++.|+|+.+++|||+||||||||||||||||+|... ++||
T Consensus 50 ~~~f~FD~Vf~-------~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~Gi 114 (365)
T 2y65_A 50 GKVYLFDKVFK-------PNASQEKVYNEAAKSIVTDVLAGYNGTIFAYGQTSSGKTHTMEGVIGDSVKQGI 114 (365)
T ss_dssp TEEEECSEEEC-------TTCCHHHHHHHHTHHHHHHHHTTCCEEEEEECSTTSSHHHHHTBSTTCTTTBCH
T ss_pred CEEEeCceEec-------CCCCHHHHHHHhhhhHHHHHhCCCceEEEeecCCCCCCceEEecCCCCcccCCh
Confidence 58999999999 89999999999999999999999999999999999999999999754 4465
No 21
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=99.92 E-value=6.4e-26 Score=170.98 Aligned_cols=62 Identities=35% Similarity=0.695 Sum_probs=59.0
Q ss_pred CCceEEeceEEecCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEeccCCCCCCC
Q psy12526 34 PPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLNGNGPFPLI 103 (103)
Q Consensus 34 ~~~~F~fd~vf~s~~~~~~~~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~G~~~~pGi 103 (103)
..+.|.||+||+ +.++|++||+. +.|+|+.+++|||+||||||||||||||||+|+.++|||
T Consensus 45 ~~~~f~FD~Vf~-------~~~~Q~~Vy~~-~~~lv~~~l~G~n~tifAYGqTGSGKTyTM~G~~~~~Gi 106 (369)
T 3cob_A 45 KAKQHMYDRVFD-------GNATQDDVFED-TKYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGADSNPGL 106 (369)
T ss_dssp CEEEEECSEEEC-------TTCCHHHHHHT-TTHHHHHHHTTCEEEEEEEECTTSSHHHHHTBCSSSBCH
T ss_pred CceEEecCEEEC-------CCCCcceehhh-hhhhhHhhhcCCceEEEEECCCCCCCeEeecCCCCCCch
Confidence 458999999999 89999999999 689999999999999999999999999999999999996
No 22
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=99.91 E-value=2.4e-25 Score=167.31 Aligned_cols=62 Identities=32% Similarity=0.553 Sum_probs=56.9
Q ss_pred CCceEEeceEEecCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEeccCCCC---CCC
Q psy12526 34 PPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLNGNGPF---PLI 103 (103)
Q Consensus 34 ~~~~F~fd~vf~s~~~~~~~~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~G~~~~---pGi 103 (103)
..+.|.||+||+ .++|++||+.++.|+|+.+++|||+||||||||||||||||+|..++ +||
T Consensus 69 ~~~~F~fD~Vf~--------~~sQ~~Vy~~~~~~lv~~~l~G~N~tIfAYGqTGSGKTyTM~G~~~~~~~~Gi 133 (358)
T 2nr8_A 69 TDWSFKLDGVLH--------DASQDLVYETVAKDVVSQALDGYNGTIMCYGQTGAGKTYTMMGATENYKHRGI 133 (358)
T ss_dssp CEEEEECSEEEE--------SCCHHHHHHHHTHHHHHHHHTTCCEEEEEEESTTSSHHHHHTBCSSCGGGBCH
T ss_pred cceEEECCeecC--------CcCHHHHHHHHHHHHHHHHhCCCceEEEEECCCCCCCceEecccccccccCCc
Confidence 357899999995 57999999999999999999999999999999999999999998764 775
No 23
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=99.91 E-value=1.8e-25 Score=167.49 Aligned_cols=59 Identities=34% Similarity=0.737 Sum_probs=54.1
Q ss_pred CceEEeceEEecCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEeccCCCCCCC
Q psy12526 35 PKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLNGNGPFPLI 103 (103)
Q Consensus 35 ~~~F~fd~vf~s~~~~~~~~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~G~~~~pGi 103 (103)
.+.|.||+||+ +.++|++||+.+ .|+|+++++|||+||||||||||||||||+|.. +||
T Consensus 52 ~~~f~FD~Vf~-------~~~~Q~~vf~~v-~~lv~~~l~G~n~tifAYGqTGSGKTyTm~g~~--~Gi 110 (349)
T 3t0q_A 52 SYNFQFDMIFE-------PSHTNKEIFEEI-RQLVQSSLDGYNVCIFAYGQTGSGKTYTMLNAG--DGM 110 (349)
T ss_dssp EEEEEESEEEC-------TTCCHHHHHHHH-HHHHHGGGTTCEEEEEEECSTTSSHHHHHHSTT--TSH
T ss_pred ceeeecCEEEC-------CCccHHHHHHHH-HHHHHHHHCCcceeEEEeCCCCCCCceEeCCCC--Cch
Confidence 57899999999 899999999985 699999999999999999999999999999963 464
No 24
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=99.91 E-value=1.3e-25 Score=168.89 Aligned_cols=62 Identities=26% Similarity=0.460 Sum_probs=57.5
Q ss_pred CceEEeceEEecCCCCCCCCCCHHHHHHHHHHHHHHHhhC-CCcEEEEeecCCCCCCceEeccCC-----CCCCC
Q psy12526 35 PKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQ-GYNACIFAYGQTGEKTNYLLNGNG-----PFPLI 103 (103)
Q Consensus 35 ~~~F~fd~vf~s~~~~~~~~~~q~~v~~~~~~~lv~~~~~-G~n~ti~aYGqtgSGKT~Tm~G~~-----~~pGi 103 (103)
.+.|.||+||+ +.++|++||+.++.|+|..+++ ||||||||||||||||||||+|.. ++|||
T Consensus 49 ~~~F~FD~Vf~-------~~~~Q~~Vy~~~~~plv~~~~~~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~~~Gi 116 (360)
T 1ry6_A 49 RHEFIVDKVFD-------DTVDNFTVYENTIKPLIIDLYENGCVCSCFAYGQTGSGKTYTMLGSQPYGQSDTPGI 116 (360)
T ss_dssp EEEEECSEEEC-------TTCCHHHHHHHHTHHHHHHHHHHCCEEEEEEECCTTSSHHHHHHBSSSTTTSSCBCH
T ss_pred cceEEeeeEec-------CCCCHHHHHHHHhhhhhhhhccCCceeEEEeeCCCCCCCCEEEecCCCCCCccCCCc
Confidence 47899999999 8999999999999999999996 999999999999999999999984 67775
No 25
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=99.91 E-value=3.5e-25 Score=165.80 Aligned_cols=60 Identities=32% Similarity=0.600 Sum_probs=54.8
Q ss_pred CCceEEeceEEecCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEeccCCCCCCC
Q psy12526 34 PPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLNGNGPFPLI 103 (103)
Q Consensus 34 ~~~~F~fd~vf~s~~~~~~~~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~G~~~~pGi 103 (103)
..+.|.||+||+ +.++|++||+.+ .|+|+.+++|||+||||||||||||||||+|. ++||
T Consensus 50 ~~~~f~FD~Vf~-------~~~~Q~~Vy~~v-~~lv~~~l~G~n~tifAYGqTGSGKTyTM~G~--~~Gi 109 (347)
T 1f9v_A 50 QVHEFKFDKIFD-------QQDTNVDVFKEV-GQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNP--GDGI 109 (347)
T ss_dssp CEEEEEESEEEC-------TTCCHHHHHHHH-HHHHGGGGGTCCEEEEEECCTTSSHHHHHHST--TTSH
T ss_pred CceEEeeCEEEC-------CCCCHHHHHHHH-HHHHHHhcCCceeEEEEECCCCCCCcEeccCC--CCCc
Confidence 458999999999 899999999985 69999999999999999999999999999995 4564
No 26
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=99.90 E-value=7.3e-25 Score=165.53 Aligned_cols=61 Identities=33% Similarity=0.686 Sum_probs=55.2
Q ss_pred CceEEeceEEecCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEeccCCC----CCCC
Q psy12526 35 PKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLNGNGP----FPLI 103 (103)
Q Consensus 35 ~~~F~fd~vf~s~~~~~~~~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~G~~~----~pGi 103 (103)
.+.|.||+||+ +.++|++||+.+ .++|+.+++|||+||||||||||||||||+|... ++||
T Consensus 82 ~~~F~FD~Vf~-------~~~~Q~~Vy~~v-~~lv~~~l~G~N~tifAYGqTGSGKTyTM~G~~~~~~~~~Gi 146 (376)
T 2rep_A 82 RHDFSFDRVFP-------PGSGQDEVFEEI-AMLVQSALDGYPVCIFAYGQTGSGKTFTMEGGPGGDPQLEGL 146 (376)
T ss_dssp -CEEECSEEEC-------TTCCHHHHHHHH-HHHHHGGGGTCCEEEEEECSTTSSHHHHHTBCSSCCGGGBCH
T ss_pred ceeeeecEEcC-------CcccchhhhhhH-HHHHHHhcCCCceEEEEeCCCCCCCceEeecCCCCCcccCCc
Confidence 57899999999 899999999986 5899999999999999999999999999999753 6675
No 27
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=99.90 E-value=1.1e-24 Score=165.84 Aligned_cols=60 Identities=30% Similarity=0.540 Sum_probs=54.4
Q ss_pred CCceEEeceEEecCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEeccCCCCCCC
Q psy12526 34 PPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLNGNGPFPLI 103 (103)
Q Consensus 34 ~~~~F~fd~vf~s~~~~~~~~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~G~~~~pGi 103 (103)
..+.|.||+||+ +.++|++||+.+ .|+|+++++|||+||||||||||||||||+|+ ++||
T Consensus 106 ~~~~F~FD~VF~-------~~~~Q~~Vf~~v-~~lv~~~l~G~N~tifAYGqTGSGKTyTM~g~--~~Gi 165 (403)
T 4etp_A 106 QVHEFKFDKIFD-------QQDTNVDVFKEV-GQLVQSSLDGYNVAIFAYGQTGSGKTFTMLNP--GDGI 165 (403)
T ss_dssp EEEEEEESEEEC-------TTCCHHHHHHHH-HHHHHHHHTTCCEEEEEESCTTSSHHHHHHCT--TTSH
T ss_pred CceEEEcCEEEC-------CCCchHHHHHHH-HHHHHHHhCCcceEEEEECCCCCCCceEeCCC--CCcc
Confidence 358899999999 899999999985 58999999999999999999999999999996 3464
No 28
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=99.89 E-value=1.7e-24 Score=173.55 Aligned_cols=73 Identities=27% Similarity=0.453 Sum_probs=59.7
Q ss_pred CEEEEecCCCCCCCCCceEEeceEEecCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEeccCCC
Q psy12526 20 QTTYLTGTGRSHLKPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLNGNGP 99 (103)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~F~fd~vf~s~~~~~~~~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~G~~~ 99 (103)
+++++..+.. .....++|+||+||+ +.++|++||+.+ .|+|+++++|||+||||||||||||||||+|.
T Consensus 415 ~~~~~~~~~~-~~~~~~~f~fd~vf~-------~~~~q~~v~~~~-~~~v~~~~~G~n~~i~ayGqtgsGKT~Tm~g~-- 483 (715)
T 4h1g_A 415 QELVITRNIN-NNFSNLRFLFDKIFE-------REQSNDLVFEEL-SQLIQCSLDGTNVCVFAYGQTGSGKTFTMSHP-- 483 (715)
T ss_dssp CEEEEEEEET-TEEEEEEEECSEEEC-------SSCCHHHHGGGT-HHHHHHHHTTCCEEEEEESSTTSSHHHHHHCT--
T ss_pred CeEEEcCCCC-CCCCCeEEEeceEeC-------CCCCHHHHHHHH-HHHHHHHhCCceEEEEccCCCCCchhhccCCC--
Confidence 4444433333 223569999999998 899999999875 59999999999999999999999999999994
Q ss_pred CCCC
Q psy12526 100 FPLI 103 (103)
Q Consensus 100 ~pGi 103 (103)
++||
T Consensus 484 ~~Gi 487 (715)
T 4h1g_A 484 TNGM 487 (715)
T ss_dssp TTSH
T ss_pred CCCc
Confidence 5675
No 29
>2o0a_A S.cerevisiae chromosome XVI reading frame ORF YPL253C; VIK1, motor homology domain, kinesin, motor domain, microtubule-binding; 1.60A {Saccharomyces cerevisiae}
Probab=99.58 E-value=9e-16 Score=111.98 Aligned_cols=48 Identities=10% Similarity=0.104 Sum_probs=45.7
Q ss_pred ceEEeceEEecCCCCCCCCCCHH--HHHHHHHHHHHHHhhC-CCcEEEEeecCCCCCCc
Q psy12526 36 KTFAFDHCFYSLDPNLPNFASQE--KVFDALGRDILDNAFQ-GYNACIFAYGQTGEKTN 91 (103)
Q Consensus 36 ~~F~fd~vf~s~~~~~~~~~~q~--~v~~~~~~~lv~~~~~-G~n~ti~aYGqtgSGKT 91 (103)
+.|.||+||. +.+.|+ +||+++ .++++.+++ |||+|||||||||||||
T Consensus 57 k~f~FDRVf~-------p~s~Qe~~~vf~E~-~~~i~scLd~GyNvcIfSyGQTGsGKT 107 (298)
T 2o0a_A 57 HVYKFNRVIP-------HLKVSEDKFFTQEY-SVYHDMCLNQKKNFNLISLSTTPHGSL 107 (298)
T ss_dssp CEEECSEEEE-------TTTSCHHHHHHHTT-HHHHHHHHHTTCCEEEEEECSSCCHHH
T ss_pred ceEEeeeEEC-------ccccccHHHHHHHH-HHHHHHHHhCCCceEEEEECCCCCCcc
Confidence 8999999998 889999 999995 699999999 99999999999999998
No 30
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=95.59 E-value=0.0016 Score=42.88 Aligned_cols=40 Identities=18% Similarity=0.115 Sum_probs=25.9
Q ss_pred CCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEe
Q psy12526 54 FASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 54 ~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm 94 (103)
...|+.+++.+ ..+++.+-..-.-.++-+|.+|+|||+.+
T Consensus 16 ~~~~~~~~~~~-~~~~~~~~~~~g~~~~l~G~~G~GKTtL~ 55 (180)
T 3ec2_A 16 NVSQNRALLTI-RVFVHNFNPEEGKGLTFVGSPGVGKTHLA 55 (180)
T ss_dssp SHHHHHHHHHH-HHHHHSCCGGGCCEEEECCSSSSSHHHHH
T ss_pred CHHHHHHHHHH-HHHHHhccccCCCEEEEECCCCCCHHHHH
Confidence 34677777655 45555533222344667999999999865
No 31
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.19 E-value=0.008 Score=39.97 Aligned_cols=38 Identities=18% Similarity=0.255 Sum_probs=24.9
Q ss_pred CHHHHHHHHHHHHHHHhhCCCc-EEEEeecCCCCCCceEe
Q psy12526 56 SQEKVFDALGRDILDNAFQGYN-ACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 56 ~q~~v~~~~~~~lv~~~~~G~n-~ti~aYGqtgSGKT~Tm 94 (103)
.+..+++.+ ..++...-.+.. ..|+-||++|+|||+.+
T Consensus 33 ~~~~~~~~~-~~~~~~~~~~~~~~~~~l~G~~GtGKT~la 71 (202)
T 2w58_A 33 GRIKAIRFA-ERFVAEYEPGKKMKGLYLHGSFGVGKTYLL 71 (202)
T ss_dssp HHHHHHHHH-HHHHHHCCSSCCCCEEEEECSTTSSHHHHH
T ss_pred hHHHHHHHH-HHHHHHhhhccCCCeEEEECCCCCCHHHHH
Confidence 566666644 345554433322 56788999999999865
No 32
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.02 E-value=0.0062 Score=44.04 Aligned_cols=39 Identities=26% Similarity=0.412 Sum_probs=25.1
Q ss_pred CHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEec
Q psy12526 56 SQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLN 95 (103)
Q Consensus 56 ~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~ 95 (103)
.+..++.. +..+++..-.+..-.|+-||.+|+||||.+.
T Consensus 132 ~~~~~~~~-~~~~i~~~~~~~~~~lll~G~~GtGKT~La~ 170 (308)
T 2qgz_A 132 SRMEAFSA-ILDFVEQYPSAEQKGLYLYGDMGIGKSYLLA 170 (308)
T ss_dssp HHHHHHHH-HHHHHHHCSCSSCCEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHH-HHHHHHhccccCCceEEEECCCCCCHHHHHH
Confidence 45556653 3455555433334567789999999999753
No 33
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=94.31 E-value=0.031 Score=35.67 Aligned_cols=29 Identities=10% Similarity=0.110 Sum_probs=20.7
Q ss_pred HHHHHHhhCCCcEEEEeecCCCCCCceEe
Q psy12526 66 RDILDNAFQGYNACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 66 ~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm 94 (103)
..++..+..+....++-||..|+|||+.+
T Consensus 32 ~~l~~~l~~~~~~~~ll~G~~G~GKT~l~ 60 (195)
T 1jbk_A 32 RRTIQVLQRRTKNNPVLIGEPGVGKTAIV 60 (195)
T ss_dssp HHHHHHHTSSSSCEEEEECCTTSCHHHHH
T ss_pred HHHHHHHhcCCCCceEEECCCCCCHHHHH
Confidence 34445555555566888999999999864
No 34
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=93.66 E-value=0.036 Score=35.47 Aligned_cols=29 Identities=10% Similarity=0.108 Sum_probs=20.6
Q ss_pred HHHHHHhhCCCcEEEEeecCCCCCCceEe
Q psy12526 66 RDILDNAFQGYNACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 66 ~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm 94 (103)
..++..+..+....|+-||.+|+|||+.+
T Consensus 32 ~~l~~~l~~~~~~~vll~G~~G~GKT~la 60 (187)
T 2p65_A 32 RRAIQILSRRTKNNPILLGDPGVGKTAIV 60 (187)
T ss_dssp HHHHHHHTSSSSCEEEEESCGGGCHHHHH
T ss_pred HHHHHHHhCCCCCceEEECCCCCCHHHHH
Confidence 34444445555667789999999999864
No 35
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=93.00 E-value=0.035 Score=40.68 Aligned_cols=33 Identities=12% Similarity=0.103 Sum_probs=23.1
Q ss_pred HHHHHHHHHHhhCCCcEEEEeecCCCCCCceEe
Q psy12526 62 DALGRDILDNAFQGYNACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 62 ~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm 94 (103)
+.+..-|-..+..+-..+|+-||.+|+|||.++
T Consensus 30 ~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v 62 (318)
T 3te6_A 30 TRIFLPIYDSLMSSQNKLFYITNADDSTKFQLV 62 (318)
T ss_dssp HHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHH
Confidence 333333333445677889999999999999764
No 36
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=91.88 E-value=0.1 Score=34.92 Aligned_cols=24 Identities=17% Similarity=0.249 Sum_probs=18.4
Q ss_pred HHHHhhCCCcEEEEeecCCCCCCceE
Q psy12526 68 ILDNAFQGYNACIFAYGQTGEKTNYL 93 (103)
Q Consensus 68 lv~~~~~G~n~ti~aYGqtgSGKT~T 93 (103)
.+..+++|.| ++..++||||||.+
T Consensus 44 ~i~~~~~~~~--~lv~~pTGsGKT~~ 67 (224)
T 1qde_A 44 AIMPIIEGHD--VLAQAQSGTGKTGT 67 (224)
T ss_dssp HHHHHHTTCC--EEEECCTTSSHHHH
T ss_pred HHHHHhcCCC--EEEECCCCCcHHHH
Confidence 3455677877 56789999999976
No 37
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=91.79 E-value=0.085 Score=37.53 Aligned_cols=36 Identities=17% Similarity=0.254 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHhhC--CC--cEEEEeecCCCCCCceE
Q psy12526 58 EKVFDALGRDILDNAFQ--GY--NACIFAYGQTGEKTNYL 93 (103)
Q Consensus 58 ~~v~~~~~~~lv~~~~~--G~--n~ti~aYGqtgSGKT~T 93 (103)
..+.+.++..++...+. +. ...|+-||+.|+|||+.
T Consensus 13 ~~~~~~~~~~~~k~~l~~~~~~~p~~lLl~GppGtGKT~l 52 (293)
T 3t15_A 13 PAFMDKLVVHITKNFLKLPNIKVPLILGIWGGKGQGKSFQ 52 (293)
T ss_dssp HHHHHHHHHHHHHTTSCCTTCCCCSEEEEEECTTSCHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCeEEEEECCCCCCHHHH
Confidence 34555566566666543 22 13577799999999974
No 38
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=91.73 E-value=0.073 Score=40.29 Aligned_cols=28 Identities=18% Similarity=0.195 Sum_probs=20.7
Q ss_pred HHHHhhCCCcEEEEeecCCCCCCceEec
Q psy12526 68 ILDNAFQGYNACIFAYGQTGEKTNYLLN 95 (103)
Q Consensus 68 lv~~~~~G~n~ti~aYGqtgSGKT~Tm~ 95 (103)
++..++..-...|.-.|.||||||.+|.
T Consensus 158 ~L~~l~~~~ggii~I~GpnGSGKTTlL~ 185 (418)
T 1p9r_A 158 NFRRLIKRPHGIILVTGPTGSGKSTTLY 185 (418)
T ss_dssp HHHHHHTSSSEEEEEECSTTSCHHHHHH
T ss_pred HHHHHHHhcCCeEEEECCCCCCHHHHHH
Confidence 4455555456678889999999998763
No 39
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=91.58 E-value=0.14 Score=33.66 Aligned_cols=23 Identities=22% Similarity=0.309 Sum_probs=16.9
Q ss_pred HHHhhCCCcEEEEeecCCCCCCceE
Q psy12526 69 LDNAFQGYNACIFAYGQTGEKTNYL 93 (103)
Q Consensus 69 v~~~~~G~n~ti~aYGqtgSGKT~T 93 (103)
+..+++|.| ++..++||||||.+
T Consensus 34 i~~~~~~~~--~lv~apTGsGKT~~ 56 (206)
T 1vec_A 34 IPIALSGRD--ILARAKNGTGKSGA 56 (206)
T ss_dssp HHHHHTTCC--EEEECCSSSTTHHH
T ss_pred HHHHccCCC--EEEECCCCCchHHH
Confidence 345567766 45688999999964
No 40
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=91.46 E-value=0.077 Score=34.60 Aligned_cols=16 Identities=13% Similarity=0.150 Sum_probs=13.7
Q ss_pred EEEeecCCCCCCceEe
Q psy12526 79 CIFAYGQTGEKTNYLL 94 (103)
Q Consensus 79 ti~aYGqtgSGKT~Tm 94 (103)
.++-||..|+|||+.+
T Consensus 40 ~~ll~G~~G~GKT~l~ 55 (226)
T 2chg_A 40 HLLFSGPPGTGKTATA 55 (226)
T ss_dssp CEEEECSTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 3888999999999854
No 41
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=91.26 E-value=0.16 Score=35.15 Aligned_cols=21 Identities=10% Similarity=0.020 Sum_probs=17.4
Q ss_pred CCCcEEEEeecCCCCCCceEe
Q psy12526 74 QGYNACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 74 ~G~n~ti~aYGqtgSGKT~Tm 94 (103)
......|+-||++|+|||+..
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la 81 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALA 81 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHH
T ss_pred CCCCeEEEEECCCCCcHHHHH
Confidence 556678999999999999854
No 42
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=91.11 E-value=0.14 Score=33.70 Aligned_cols=23 Identities=22% Similarity=0.364 Sum_probs=17.2
Q ss_pred HHHhhCCCcEEEEeecCCCCCCceE
Q psy12526 69 LDNAFQGYNACIFAYGQTGEKTNYL 93 (103)
Q Consensus 69 v~~~~~G~n~ti~aYGqtgSGKT~T 93 (103)
+..+++|.+ ++..++||||||.+
T Consensus 32 i~~~~~~~~--~li~~~TGsGKT~~ 54 (207)
T 2gxq_A 32 LPLALEGKD--LIGQARTGTGKTLA 54 (207)
T ss_dssp HHHHHTTCC--EEEECCTTSCHHHH
T ss_pred HHHHcCCCC--EEEECCCCChHHHH
Confidence 345567777 45678999999975
No 43
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=91.03 E-value=0.063 Score=34.65 Aligned_cols=17 Identities=29% Similarity=0.661 Sum_probs=13.6
Q ss_pred EEEeecCCCCCCceEec
Q psy12526 79 CIFAYGQTGEKTNYLLN 95 (103)
Q Consensus 79 ti~aYGqtgSGKT~Tm~ 95 (103)
.++-+|.+|+|||+.+.
T Consensus 38 ~~~l~G~~G~GKTtL~~ 54 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQ 54 (149)
T ss_dssp EEEEESSSTTTTCHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 45569999999998653
No 44
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=90.82 E-value=0.17 Score=33.68 Aligned_cols=19 Identities=16% Similarity=0.272 Sum_probs=15.4
Q ss_pred CcEEEEeecCCCCCCceEe
Q psy12526 76 YNACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 76 ~n~ti~aYGqtgSGKT~Tm 94 (103)
-...++-||+.|+|||+.+
T Consensus 51 ~~~~~ll~G~~G~GKT~la 69 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLI 69 (242)
T ss_dssp SCSEEEEECSTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 4456788999999999864
No 45
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=90.79 E-value=0.15 Score=34.68 Aligned_cols=23 Identities=17% Similarity=0.310 Sum_probs=17.9
Q ss_pred HHHhhCCCcEEEEeecCCCCCCceE
Q psy12526 69 LDNAFQGYNACIFAYGQTGEKTNYL 93 (103)
Q Consensus 69 v~~~~~G~n~ti~aYGqtgSGKT~T 93 (103)
+..+++|.+ ++..++||||||.+
T Consensus 60 i~~~~~~~~--~l~~a~TGsGKT~~ 82 (245)
T 3dkp_A 60 IPVMLHGRE--LLASAPTGSGKTLA 82 (245)
T ss_dssp HHHHHTTCC--EEEECCTTSCHHHH
T ss_pred HHHHhCCCC--EEEECCCCCcHHHH
Confidence 455677877 56789999999975
No 46
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=90.73 E-value=0.077 Score=36.17 Aligned_cols=24 Identities=21% Similarity=0.403 Sum_probs=18.3
Q ss_pred HHHHhhCCCcEEEEeecCCCCCCceE
Q psy12526 68 ILDNAFQGYNACIFAYGQTGEKTNYL 93 (103)
Q Consensus 68 lv~~~~~G~n~ti~aYGqtgSGKT~T 93 (103)
.+..+++|.| ++..++||||||.+
T Consensus 60 ai~~i~~~~~--~li~apTGsGKT~~ 83 (237)
T 3bor_A 60 AIIPCIKGYD--VIAQAQSGTGKTAT 83 (237)
T ss_dssp HHHHHHTTCC--EEECCCSSHHHHHH
T ss_pred HHHHHhCCCC--EEEECCCCCcHHHH
Confidence 3455677877 56789999999975
No 47
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=90.28 E-value=0.19 Score=34.63 Aligned_cols=17 Identities=12% Similarity=0.319 Sum_probs=13.9
Q ss_pred EEEEeecCCCCCCceEe
Q psy12526 78 ACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 78 ~ti~aYGqtgSGKT~Tm 94 (103)
..|+-||++|+|||+..
T Consensus 30 ~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIA 46 (265)
T ss_dssp SCEEEECCTTSCHHHHH
T ss_pred CCEEEECCCCCcHHHHH
Confidence 45777999999999754
No 48
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=90.18 E-value=0.091 Score=38.88 Aligned_cols=26 Identities=15% Similarity=0.147 Sum_probs=18.1
Q ss_pred HHhhCCCcEEEEeecCCCCCCceEec
Q psy12526 70 DNAFQGYNACIFAYGQTGEKTNYLLN 95 (103)
Q Consensus 70 ~~~~~G~n~ti~aYGqtgSGKT~Tm~ 95 (103)
..++.--...+.--|.||||||.+|.
T Consensus 116 ~~l~~~~~g~i~I~GptGSGKTTlL~ 141 (356)
T 3jvv_A 116 KRVSDVPRGLVLVTGPTGSGKSTTLA 141 (356)
T ss_dssp HHHHHCSSEEEEEECSTTSCHHHHHH
T ss_pred HHHHhCCCCEEEEECCCCCCHHHHHH
Confidence 33333334577788999999998763
No 49
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=90.04 E-value=0.19 Score=33.95 Aligned_cols=23 Identities=22% Similarity=0.388 Sum_probs=17.4
Q ss_pred HHHhhCCCcEEEEeecCCCCCCceE
Q psy12526 69 LDNAFQGYNACIFAYGQTGEKTNYL 93 (103)
Q Consensus 69 v~~~~~G~n~ti~aYGqtgSGKT~T 93 (103)
+..+++|.+ ++..++||||||.+
T Consensus 56 i~~~~~~~~--~li~a~TGsGKT~~ 78 (236)
T 2pl3_A 56 IGLALQGKD--VLGAAKTGSGKTLA 78 (236)
T ss_dssp HHHHHTTCC--EEEECCTTSCHHHH
T ss_pred HHHHhCCCC--EEEEeCCCCcHHHH
Confidence 455677877 45678999999975
No 50
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=89.86 E-value=0.26 Score=31.07 Aligned_cols=17 Identities=18% Similarity=0.362 Sum_probs=13.6
Q ss_pred cEEEEeecCCCCCCceE
Q psy12526 77 NACIFAYGQTGEKTNYL 93 (103)
Q Consensus 77 n~ti~aYGqtgSGKT~T 93 (103)
+..|+-||++|+|||+.
T Consensus 24 ~~~vll~G~~GtGKt~l 40 (145)
T 3n70_A 24 DIAVWLYGAPGTGRMTG 40 (145)
T ss_dssp CSCEEEESSTTSSHHHH
T ss_pred CCCEEEECCCCCCHHHH
Confidence 34467899999999874
No 51
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=89.84 E-value=0.2 Score=34.24 Aligned_cols=23 Identities=17% Similarity=0.219 Sum_probs=17.0
Q ss_pred HHHhhCCCcEEEEeecCCCCCCceE
Q psy12526 69 LDNAFQGYNACIFAYGQTGEKTNYL 93 (103)
Q Consensus 69 v~~~~~G~n~ti~aYGqtgSGKT~T 93 (103)
+..+++|.|+ +..++||||||.+
T Consensus 54 i~~i~~~~~~--l~~a~TGsGKT~~ 76 (253)
T 1wrb_A 54 IPAILEHRDI--MACAQTGSGKTAA 76 (253)
T ss_dssp HHHHHTTCCE--EEECCTTSSHHHH
T ss_pred HHHHhCCCCE--EEECCCCChHHHH
Confidence 3455778774 5678999999974
No 52
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=89.76 E-value=0.22 Score=35.91 Aligned_cols=25 Identities=20% Similarity=0.380 Sum_probs=19.4
Q ss_pred HHHHHhhCCCcEEEEeecCCCCCCceE
Q psy12526 67 DILDNAFQGYNACIFAYGQTGEKTNYL 93 (103)
Q Consensus 67 ~lv~~~~~G~n~ti~aYGqtgSGKT~T 93 (103)
..+..+++|.+ ++..++||||||.+
T Consensus 69 ~~i~~~~~~~~--~lv~a~TGsGKT~~ 93 (414)
T 3eiq_A 69 RAILPCIKGYD--VIAQAQSGTGKTAT 93 (414)
T ss_dssp HHHHHHHTTCC--EEECCCSCSSSHHH
T ss_pred HHhHHHhCCCC--EEEECCCCCcccHH
Confidence 34566778888 56789999999975
No 53
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=89.70 E-value=0.21 Score=33.55 Aligned_cols=23 Identities=22% Similarity=0.237 Sum_probs=17.4
Q ss_pred HHHhhCCCcEEEEeecCCCCCCceE
Q psy12526 69 LDNAFQGYNACIFAYGQTGEKTNYL 93 (103)
Q Consensus 69 v~~~~~G~n~ti~aYGqtgSGKT~T 93 (103)
+..+++|.|+ +..++||||||.+
T Consensus 51 i~~~~~~~~~--l~~apTGsGKT~~ 73 (228)
T 3iuy_A 51 WPIILQGIDL--IVVAQTGTGKTLS 73 (228)
T ss_dssp HHHHHTTCCE--EEECCTTSCHHHH
T ss_pred HHHHhCCCCE--EEECCCCChHHHH
Confidence 4556788775 5678999999964
No 54
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=89.67 E-value=0.15 Score=34.83 Aligned_cols=24 Identities=25% Similarity=0.221 Sum_probs=16.7
Q ss_pred HHHHhhCCCcEEEEeecCCCCCCceE
Q psy12526 68 ILDNAFQGYNACIFAYGQTGEKTNYL 93 (103)
Q Consensus 68 lv~~~~~G~n~ti~aYGqtgSGKT~T 93 (103)
++..+.+|-+ ++..|+||||||..
T Consensus 69 ~i~~i~~g~~--~~i~g~TGsGKTt~ 92 (235)
T 3llm_A 69 ILEAISQNSV--VIIRGATGCGKTTQ 92 (235)
T ss_dssp HHHHHHHCSE--EEEECCTTSSHHHH
T ss_pred HHHHHhcCCE--EEEEeCCCCCcHHh
Confidence 3444556654 45689999999963
No 55
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=89.64 E-value=0.11 Score=36.12 Aligned_cols=24 Identities=17% Similarity=0.333 Sum_probs=17.7
Q ss_pred HHHHhhCCCcEEEEeecCCCCCCceE
Q psy12526 68 ILDNAFQGYNACIFAYGQTGEKTNYL 93 (103)
Q Consensus 68 lv~~~~~G~n~ti~aYGqtgSGKT~T 93 (103)
.+..+++|.| ++..++||||||.+
T Consensus 84 ~i~~~~~~~~--~lv~a~TGsGKT~~ 107 (262)
T 3ly5_A 84 SIRPLLEGRD--LLAAAKTGSGKTLA 107 (262)
T ss_dssp HHHHHHHTCC--CEECCCTTSCHHHH
T ss_pred HHHHHhCCCc--EEEEccCCCCchHH
Confidence 3445566766 56789999999965
No 56
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=89.54 E-value=0.052 Score=35.82 Aligned_cols=23 Identities=26% Similarity=0.307 Sum_probs=16.5
Q ss_pred HHhhCCCcEEEEeecCCCCCCceEe
Q psy12526 70 DNAFQGYNACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 70 ~~~~~G~n~ti~aYGqtgSGKT~Tm 94 (103)
..+++|.+ ++..++||+|||.+.
T Consensus 43 ~~~~~~~~--~li~~~tGsGKT~~~ 65 (216)
T 3b6e_A 43 QPALEGKN--IIICLPTGSGKTRVA 65 (216)
T ss_dssp HHHHTTCC--EEEECSCHHHHHHHH
T ss_pred HHHhcCCC--EEEEcCCCCCHHHHH
Confidence 34456666 456899999999754
No 57
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=89.46 E-value=0.21 Score=31.50 Aligned_cols=16 Identities=19% Similarity=0.343 Sum_probs=13.1
Q ss_pred EEEeecCCCCCCceEe
Q psy12526 79 CIFAYGQTGEKTNYLL 94 (103)
Q Consensus 79 ti~aYGqtgSGKT~Tm 94 (103)
.|+-||++|+|||+..
T Consensus 29 ~vll~G~~GtGKt~lA 44 (143)
T 3co5_A 29 PVFLTGEAGSPFETVA 44 (143)
T ss_dssp CEEEEEETTCCHHHHH
T ss_pred cEEEECCCCccHHHHH
Confidence 4667999999999754
No 58
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=89.35 E-value=0.23 Score=33.06 Aligned_cols=23 Identities=13% Similarity=0.354 Sum_probs=17.2
Q ss_pred HHHhhCCCcEEEEeecCCCCCCceE
Q psy12526 69 LDNAFQGYNACIFAYGQTGEKTNYL 93 (103)
Q Consensus 69 v~~~~~G~n~ti~aYGqtgSGKT~T 93 (103)
+..+++|.| ++...+||||||.+
T Consensus 45 i~~~~~~~~--~li~~~TGsGKT~~ 67 (220)
T 1t6n_A 45 IPQAILGMD--VLCQAKSGMGKTAV 67 (220)
T ss_dssp HHHHHTTCC--EEEECCTTSCHHHH
T ss_pred HHHHhCCCC--EEEECCCCCchhhh
Confidence 455677877 45677999999974
No 59
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=89.22 E-value=0.18 Score=35.97 Aligned_cols=26 Identities=15% Similarity=0.073 Sum_probs=18.6
Q ss_pred HHHHhhCCCcEEEEeecCCCCCCceE
Q psy12526 68 ILDNAFQGYNACIFAYGQTGEKTNYL 93 (103)
Q Consensus 68 lv~~~~~G~n~ti~aYGqtgSGKT~T 93 (103)
.+..++.|-.-.+++.++||||||..
T Consensus 122 ai~~il~~~~~~~l~~a~TGsGKT~a 147 (300)
T 3fmo_B 122 ALPLMLAEPPQNLIAQSQSGTGKTAA 147 (300)
T ss_dssp HHHHHTSSSCCCEEEECCTTSSHHHH
T ss_pred HHHHHHcCCCCeEEEECCCCCCccHH
Confidence 35566777333467899999999965
No 60
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=89.15 E-value=0.21 Score=37.29 Aligned_cols=26 Identities=15% Similarity=0.073 Sum_probs=19.9
Q ss_pred HHHHhhCCCcEEEEeecCCCCCCceE
Q psy12526 68 ILDNAFQGYNACIFAYGQTGEKTNYL 93 (103)
Q Consensus 68 lv~~~~~G~n~ti~aYGqtgSGKT~T 93 (103)
.+..+++|-+-.++..++||||||..
T Consensus 122 ai~~il~~~~~~~l~~a~TGsGKT~~ 147 (479)
T 3fmp_B 122 ALPLMLAEPPQNLIAQSQSGTGKTAA 147 (479)
T ss_dssp HHHHHTSBSCCEEEEECCSSSSHHHH
T ss_pred HHHHHHcCCCCcEEEEcCCCCchhHH
Confidence 45566777555678899999999965
No 61
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=89.10 E-value=0.27 Score=35.25 Aligned_cols=38 Identities=21% Similarity=0.183 Sum_probs=24.4
Q ss_pred CHHHHHHHHHHHHHHHhhCCCcE--EEEeecCCCCCCceEe
Q psy12526 56 SQEKVFDALGRDILDNAFQGYNA--CIFAYGQTGEKTNYLL 94 (103)
Q Consensus 56 ~q~~v~~~~~~~lv~~~~~G~n~--ti~aYGqtgSGKT~Tm 94 (103)
.|+.+-..+ ..++..+..|... .++-||++|+|||+..
T Consensus 48 G~~~~~~~l-~~l~~~~~~~~~~~~~vLl~GppGtGKT~la 87 (368)
T 3uk6_A 48 GQLAARRAA-GVVLEMIREGKIAGRAVLIAGQPGTGKTAIA 87 (368)
T ss_dssp SCHHHHHHH-HHHHHHHHTTCCTTCEEEEEESTTSSHHHHH
T ss_pred ChHHHHHHH-HHHHHHHHcCCCCCCEEEEECCCCCCHHHHH
Confidence 344444332 3455555566543 7888999999999754
No 62
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=89.00 E-value=0.18 Score=38.82 Aligned_cols=28 Identities=14% Similarity=0.213 Sum_probs=18.8
Q ss_pred HHHHHhhCCCcEEEEeecCCCCCCceEec
Q psy12526 67 DILDNAFQGYNACIFAYGQTGEKTNYLLN 95 (103)
Q Consensus 67 ~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~ 95 (103)
.+++.+.+|.+-.+++ +.||||||.+++
T Consensus 189 ~~~~~~~~~~~~~ll~-~~TGsGKT~~~~ 216 (590)
T 3h1t_A 189 RAVQSVLQGKKRSLIT-MATGTGKTVVAF 216 (590)
T ss_dssp HHHHHHHTTCSEEEEE-ECTTSCHHHHHH
T ss_pred HHHHHHhcCCCceEEE-ecCCCChHHHHH
Confidence 3344455576655544 899999998853
No 63
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=88.66 E-value=0.31 Score=34.93 Aligned_cols=39 Identities=18% Similarity=0.223 Sum_probs=24.8
Q ss_pred CCHHHHHHHHHHHHHHHhhCCC-cE--EEEeecCCCCCCceEe
Q psy12526 55 ASQEKVFDALGRDILDNAFQGY-NA--CIFAYGQTGEKTNYLL 94 (103)
Q Consensus 55 ~~q~~v~~~~~~~lv~~~~~G~-n~--ti~aYGqtgSGKT~Tm 94 (103)
..++...+.+. ..+...+.|- .. .++-||..|+|||..+
T Consensus 20 ~gr~~~~~~l~-~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~ 61 (389)
T 1fnn_A 20 PHREQQLQQLD-ILLGNWLRNPGHHYPRATLLGRPGTGKTVTL 61 (389)
T ss_dssp TTCHHHHHHHH-HHHHHHHHSTTSSCCEEEEECCTTSSHHHHH
T ss_pred CChHHHHHHHH-HHHHHHHcCCCCCCCeEEEECCCCCCHHHHH
Confidence 34555555554 3444544443 33 6788999999999865
No 64
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=88.61 E-value=0.26 Score=35.37 Aligned_cols=39 Identities=10% Similarity=0.137 Sum_probs=25.6
Q ss_pred CCHHHHHHHHHHHHHHHhhCC-CcEEEEeecCCCCCCceEe
Q psy12526 55 ASQEKVFDALGRDILDNAFQG-YNACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 55 ~~q~~v~~~~~~~lv~~~~~G-~n~ti~aYGqtgSGKT~Tm 94 (103)
..++...+.+. ..+..++.+ ....|+-||..|+|||..+
T Consensus 23 ~gr~~~~~~l~-~~l~~~~~~~~~~~vll~G~~G~GKT~la 62 (384)
T 2qby_B 23 PFREDILRDAA-IAIRYFVKNEVKFSNLFLGLTGTGKTFVS 62 (384)
T ss_dssp TTCHHHHHHHH-HHHHHHHTTCCCCEEEEEECTTSSHHHHH
T ss_pred CChHHHHHHHH-HHHHHHHcCCCCCcEEEECCCCCCHHHHH
Confidence 34555565554 344554443 3457889999999999754
No 65
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=88.60 E-value=0.19 Score=38.89 Aligned_cols=23 Identities=17% Similarity=0.232 Sum_probs=17.2
Q ss_pred HhhCCCcEEEEeecCCCCCCceEec
Q psy12526 71 NAFQGYNACIFAYGQTGEKTNYLLN 95 (103)
Q Consensus 71 ~~~~G~n~ti~aYGqtgSGKT~Tm~ 95 (103)
.+-.|.+ +.--|.||||||.+|.
T Consensus 256 ~v~~g~~--i~I~GptGSGKTTlL~ 278 (511)
T 2oap_1 256 AIEHKFS--AIVVGETASGKTTTLN 278 (511)
T ss_dssp HHHTTCC--EEEEESTTSSHHHHHH
T ss_pred HHhCCCE--EEEECCCCCCHHHHHH
Confidence 3456777 4568999999998753
No 66
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=88.59 E-value=0.28 Score=33.10 Aligned_cols=23 Identities=9% Similarity=0.173 Sum_probs=17.2
Q ss_pred HHHhhCCCcEEEEeecCCCCCCceE
Q psy12526 69 LDNAFQGYNACIFAYGQTGEKTNYL 93 (103)
Q Consensus 69 v~~~~~G~n~ti~aYGqtgSGKT~T 93 (103)
+..+++|.|+ +...+||||||.+
T Consensus 55 i~~~~~~~~~--l~~a~TGsGKT~~ 77 (230)
T 2oxc_A 55 IPLGRCGLDL--IVQAKSGTGKTCV 77 (230)
T ss_dssp HHHHHTTCCE--EEECCTTSSHHHH
T ss_pred HHHHhCCCCE--EEECCCCCcHHHH
Confidence 3456778774 4578999999975
No 67
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=88.46 E-value=0.044 Score=39.26 Aligned_cols=39 Identities=21% Similarity=0.307 Sum_probs=24.2
Q ss_pred CCHHHHHHHHHHHHHHHhh-CCCcEEEEeecCCCCCCceEe
Q psy12526 55 ASQEKVFDALGRDILDNAF-QGYNACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 55 ~~q~~v~~~~~~~lv~~~~-~G~n~ti~aYGqtgSGKT~Tm 94 (103)
..++...+.+. ..+..++ .+-...++-||++|+|||+.+
T Consensus 22 ~gr~~~~~~l~-~~l~~~~~~~~~~~vll~G~~G~GKT~l~ 61 (387)
T 2v1u_A 22 PHREAELRRLA-EVLAPALRGEKPSNALLYGLTGTGKTAVA 61 (387)
T ss_dssp TTCHHHHHHHH-HTTGGGTSSCCCCCEEECBCTTSSHHHHH
T ss_pred CCHHHHHHHHH-HHHHHHHcCCCCCcEEEECCCCCCHHHHH
Confidence 34555555543 2333333 334456888999999999764
No 68
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=88.43 E-value=0.28 Score=33.76 Aligned_cols=24 Identities=21% Similarity=0.264 Sum_probs=17.4
Q ss_pred HHHHhhCCCcEEEEeecCCCCCCceE
Q psy12526 68 ILDNAFQGYNACIFAYGQTGEKTNYL 93 (103)
Q Consensus 68 lv~~~~~G~n~ti~aYGqtgSGKT~T 93 (103)
.+..+++|.++ +..++||||||.+
T Consensus 73 ~i~~i~~~~~~--lv~a~TGsGKT~~ 96 (249)
T 3ber_A 73 AIPLALQGRDI--IGLAETGSGKTGA 96 (249)
T ss_dssp HHHHHHTTCCE--EEECCTTSCHHHH
T ss_pred HHHHHhCCCCE--EEEcCCCCCchhH
Confidence 34556778774 4577999999975
No 69
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=87.63 E-value=0.29 Score=33.30 Aligned_cols=22 Identities=23% Similarity=0.292 Sum_probs=16.1
Q ss_pred HHhhCCCcEEEEeecCCCCCCceE
Q psy12526 70 DNAFQGYNACIFAYGQTGEKTNYL 93 (103)
Q Consensus 70 ~~~~~G~n~ti~aYGqtgSGKT~T 93 (103)
..+++|.|+ +..++||||||.+
T Consensus 61 ~~~~~g~~~--l~~apTGsGKT~~ 82 (242)
T 3fe2_A 61 PVALSGLDM--VGVAQTGSGKTLS 82 (242)
T ss_dssp HHHHHTCCE--EEEECTTSCHHHH
T ss_pred HHHhCCCCE--EEECCCcCHHHHH
Confidence 445677774 4567999999975
No 70
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=87.55 E-value=0.1 Score=35.86 Aligned_cols=15 Identities=20% Similarity=0.315 Sum_probs=13.3
Q ss_pred EEeecCCCCCCceEe
Q psy12526 80 IFAYGQTGEKTNYLL 94 (103)
Q Consensus 80 i~aYGqtgSGKT~Tm 94 (103)
++-||++|+|||+.+
T Consensus 52 ~ll~G~~G~GKTtl~ 66 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLA 66 (254)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 788999999999864
No 71
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=87.49 E-value=0.34 Score=35.08 Aligned_cols=24 Identities=17% Similarity=0.332 Sum_probs=18.2
Q ss_pred HHHHhhCCCcEEEEeecCCCCCCceE
Q psy12526 68 ILDNAFQGYNACIFAYGQTGEKTNYL 93 (103)
Q Consensus 68 lv~~~~~G~n~ti~aYGqtgSGKT~T 93 (103)
.+..+++|.+ ++..++||||||.+
T Consensus 67 ai~~i~~~~~--~lv~a~TGsGKT~~ 90 (410)
T 2j0s_A 67 AIKQIIKGRD--VIAQSQSGTGKTAT 90 (410)
T ss_dssp HHHHHHTTCC--EEEECCTTSSHHHH
T ss_pred HHHHHhCCCC--EEEECCCCCCchHH
Confidence 3455678877 45688999999964
No 72
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=87.19 E-value=0.42 Score=35.95 Aligned_cols=38 Identities=18% Similarity=0.134 Sum_probs=25.1
Q ss_pred CHHHHHHHHHHHHHHHhhCCCc--EEEEeecCCCCCCceEe
Q psy12526 56 SQEKVFDALGRDILDNAFQGYN--ACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 56 ~q~~v~~~~~~~lv~~~~~G~n--~ti~aYGqtgSGKT~Tm 94 (103)
.|+++-+.+ ..+++.+..|.. ..++-||++|+|||+..
T Consensus 41 G~~~~~~~l-~~~~~~~~~~~~~~~~iLl~GppGtGKT~la 80 (456)
T 2c9o_A 41 GQENAREAC-GVIVELIKSKKMAGRAVLLAGPPGTGKTALA 80 (456)
T ss_dssp SCHHHHHHH-HHHHHHHHTTCCTTCEEEEECCTTSSHHHHH
T ss_pred CHHHHHHHH-HHHHHHHHhCCCCCCeEEEECCCcCCHHHHH
Confidence 556665544 345566666643 35777999999999743
No 73
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=86.98 E-value=0.58 Score=32.66 Aligned_cols=19 Identities=11% Similarity=0.046 Sum_probs=15.3
Q ss_pred CcEEEEeecCCCCCCceEe
Q psy12526 76 YNACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 76 ~n~ti~aYGqtgSGKT~Tm 94 (103)
-...|+-||.+|+|||+..
T Consensus 66 ~~~~vll~G~~GtGKT~la 84 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVA 84 (309)
T ss_dssp CCCEEEEEECTTSSHHHHH
T ss_pred CCceEEEECCCCCCHHHHH
Confidence 3446888999999999865
No 74
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=86.91 E-value=0.21 Score=35.15 Aligned_cols=18 Identities=22% Similarity=0.302 Sum_probs=14.3
Q ss_pred cEEEEeecCCCCCCceEe
Q psy12526 77 NACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 77 n~ti~aYGqtgSGKT~Tm 94 (103)
...+.-.|+||||||.+|
T Consensus 25 g~~v~i~Gp~GsGKSTll 42 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTI 42 (261)
T ss_dssp SEEEEEECSTTCSHHHHH
T ss_pred CCEEEEECCCCccHHHHH
Confidence 345667899999999865
No 75
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=86.55 E-value=0.32 Score=34.95 Aligned_cols=26 Identities=15% Similarity=0.073 Sum_probs=18.4
Q ss_pred HHHHhhCCCcEEEEeecCCCCCCceE
Q psy12526 68 ILDNAFQGYNACIFAYGQTGEKTNYL 93 (103)
Q Consensus 68 lv~~~~~G~n~ti~aYGqtgSGKT~T 93 (103)
.+..+++|.+-.++..++||||||..
T Consensus 55 ~i~~~~~~~~~~~lv~apTGsGKT~~ 80 (412)
T 3fht_A 55 ALPLMLAEPPQNLIAQSQSGTGKTAA 80 (412)
T ss_dssp HHHHHHSSSCCCEEEECCTTSCHHHH
T ss_pred HHHHHhcCCCCeEEEECCCCchHHHH
Confidence 34556676334466789999999975
No 76
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=86.31 E-value=0.36 Score=35.23 Aligned_cols=22 Identities=18% Similarity=0.140 Sum_probs=17.0
Q ss_pred HHHhhCCCcEEEEeecCCCCCCce
Q psy12526 69 LDNAFQGYNACIFAYGQTGEKTNY 92 (103)
Q Consensus 69 v~~~~~G~n~ti~aYGqtgSGKT~ 92 (103)
+..+++|.| ++..++||||||.
T Consensus 30 i~~i~~~~~--~lv~apTGsGKT~ 51 (414)
T 3oiy_A 30 AKRIVQGKS--FTMVAPTGVGKTT 51 (414)
T ss_dssp HHHHTTTCC--EECCSCSSSSHHH
T ss_pred HHHHhcCCC--EEEEeCCCCCHHH
Confidence 445567776 5678999999997
No 77
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=86.23 E-value=0.29 Score=35.12 Aligned_cols=15 Identities=20% Similarity=0.499 Sum_probs=13.1
Q ss_pred EEeecCCCCCCceEe
Q psy12526 80 IFAYGQTGEKTNYLL 94 (103)
Q Consensus 80 i~aYGqtgSGKT~Tm 94 (103)
++-||+.|+|||+++
T Consensus 49 ~ll~Gp~G~GKTtla 63 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTI 63 (340)
T ss_dssp EEEECSSSSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 677999999999865
No 78
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=86.09 E-value=0.47 Score=32.78 Aligned_cols=18 Identities=28% Similarity=0.457 Sum_probs=14.5
Q ss_pred cEEEEeecCCCCCCceEe
Q psy12526 77 NACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 77 n~ti~aYGqtgSGKT~Tm 94 (103)
...|+-||..|+|||+.+
T Consensus 51 ~~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLA 68 (285)
T ss_dssp CSEEEEESSSSSSHHHHH
T ss_pred CCeEEEECCCCCcHHHHH
Confidence 345788999999999754
No 79
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=86.08 E-value=0.14 Score=36.50 Aligned_cols=49 Identities=18% Similarity=0.340 Sum_probs=27.3
Q ss_pred ceEEeceEEecCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEe
Q psy12526 36 KTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 36 ~~F~fd~vf~s~~~~~~~~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm 94 (103)
..|+||.... ...+...+.. +..++..--. ....++-||.+|+|||+.+
T Consensus 6 ~~~~f~~fv~--------g~~~~~a~~~-~~~~~~~~~~-~~~~lll~G~~GtGKT~la 54 (324)
T 1l8q_A 6 PKYTLENFIV--------GEGNRLAYEV-VKEALENLGS-LYNPIFIYGSVGTGKTHLL 54 (324)
T ss_dssp TTCCSSSCCC--------CTTTHHHHHH-HHHHHHTTTT-SCSSEEEECSSSSSHHHHH
T ss_pred CCCCcccCCC--------CCcHHHHHHH-HHHHHhCcCC-CCCeEEEECCCCCcHHHHH
Confidence 3466776542 2244445544 3334433211 2235778999999999865
No 80
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=86.01 E-value=0.21 Score=33.38 Aligned_cols=22 Identities=23% Similarity=0.256 Sum_probs=16.2
Q ss_pred HHhhCCCcEEEEeecCCCCCCceE
Q psy12526 70 DNAFQGYNACIFAYGQTGEKTNYL 93 (103)
Q Consensus 70 ~~~~~G~n~ti~aYGqtgSGKT~T 93 (103)
..+++|.|+ +..++||||||.+
T Consensus 36 ~~~~~~~~~--lv~a~TGsGKT~~ 57 (219)
T 1q0u_A 36 PGALRGESM--VGQSQTGTGKTHA 57 (219)
T ss_dssp HHHHHTCCE--EEECCSSHHHHHH
T ss_pred HHHhCCCCE--EEECCCCChHHHH
Confidence 445567664 5678999999975
No 81
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=85.98 E-value=0.3 Score=33.52 Aligned_cols=16 Identities=19% Similarity=0.337 Sum_probs=13.6
Q ss_pred EEEeecCCCCCCceEe
Q psy12526 79 CIFAYGQTGEKTNYLL 94 (103)
Q Consensus 79 ti~aYGqtgSGKT~Tm 94 (103)
.|+-||++|+|||+.+
T Consensus 46 ~vll~G~~GtGKT~la 61 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLA 61 (268)
T ss_dssp CCCCBCSSCSSHHHHH
T ss_pred eEEEECCCCCcHHHHH
Confidence 4788999999999864
No 82
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=85.86 E-value=0.3 Score=31.97 Aligned_cols=17 Identities=12% Similarity=0.141 Sum_probs=14.2
Q ss_pred EEEEeecCCCCCCceEe
Q psy12526 78 ACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 78 ~ti~aYGqtgSGKT~Tm 94 (103)
..++-||..|+|||+.+
T Consensus 46 ~~~ll~G~~G~GKT~l~ 62 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIA 62 (250)
T ss_dssp SEEEEECSTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 36788999999999754
No 83
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=85.67 E-value=0.92 Score=32.15 Aligned_cols=31 Identities=26% Similarity=0.278 Sum_probs=20.8
Q ss_pred HHHHHHHHHhhCCC-----cEEEEeecCCCCCCceE
Q psy12526 63 ALGRDILDNAFQGY-----NACIFAYGQTGEKTNYL 93 (103)
Q Consensus 63 ~~~~~lv~~~~~G~-----n~ti~aYGqtgSGKT~T 93 (103)
.+...++..++.++ ...|+-.|.+|||||+.
T Consensus 14 ~~~~~~~~~~l~~~~~~~~~~livl~G~sGsGKSTl 49 (287)
T 1gvn_B 14 NRLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSL 49 (287)
T ss_dssp HHHHHHHHHHHTTCCCCSSCEEEEEECCTTSCTHHH
T ss_pred HHHHHHHHHHhccccCCCCCeEEEEECCCCCCHHHH
Confidence 34445555655543 35678889999999864
No 84
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=85.47 E-value=0.57 Score=35.60 Aligned_cols=26 Identities=12% Similarity=0.235 Sum_probs=19.1
Q ss_pred HHHHhhCCCcEEEEeecCCCCCCceE
Q psy12526 68 ILDNAFQGYNACIFAYGQTGEKTNYL 93 (103)
Q Consensus 68 lv~~~~~G~n~ti~aYGqtgSGKT~T 93 (103)
.+..++.+-+-.++..++||||||..
T Consensus 102 ~i~~~l~~~~~~~lv~apTGsGKTl~ 127 (563)
T 3i5x_A 102 TIKPILSSEDHDVIARAKTGTGKTFA 127 (563)
T ss_dssp HHHHHHSSSSEEEEEECCTTSCHHHH
T ss_pred HHHHHhcCCCCeEEEECCCCCCccHH
Confidence 44556655455678899999999974
No 85
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=85.33 E-value=0.37 Score=34.15 Aligned_cols=17 Identities=12% Similarity=0.417 Sum_probs=14.0
Q ss_pred EEEEeecCCCCCCceEe
Q psy12526 78 ACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 78 ~ti~aYGqtgSGKT~Tm 94 (103)
.-|+-||.+|+|||+.+
T Consensus 46 ~~vLl~G~~GtGKT~la 62 (350)
T 1g8p_A 46 GGVLVFGDRGTGKSTAV 62 (350)
T ss_dssp CCEEEECCGGGCTTHHH
T ss_pred ceEEEECCCCccHHHHH
Confidence 34888999999999854
No 86
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=85.16 E-value=0.26 Score=33.54 Aligned_cols=18 Identities=17% Similarity=0.170 Sum_probs=14.8
Q ss_pred cEEEEeecCCCCCCceEe
Q psy12526 77 NACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 77 n~ti~aYGqtgSGKT~Tm 94 (103)
...|+-||+.|+|||+.+
T Consensus 39 ~~~vll~G~~GtGKT~la 56 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLA 56 (262)
T ss_dssp CCEEEEESCTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 446889999999999854
No 87
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=85.04 E-value=0.41 Score=32.88 Aligned_cols=23 Identities=9% Similarity=-0.090 Sum_probs=16.3
Q ss_pred HHhhCCCcEEEEeecCCCCCCceEe
Q psy12526 70 DNAFQGYNACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 70 ~~~~~G~n~ti~aYGqtgSGKT~Tm 94 (103)
..++++.+ ++..|.||+|||+..
T Consensus 103 ~~~~~~~~--~ll~~~tG~GKT~~a 125 (237)
T 2fz4_A 103 ERWLVDKR--GCIVLPTGSGKTHVA 125 (237)
T ss_dssp HHHTTTSE--EEEEESSSTTHHHHH
T ss_pred HHHHhCCC--EEEEeCCCCCHHHHH
Confidence 34556655 556789999999864
No 88
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=84.94 E-value=0.53 Score=34.94 Aligned_cols=23 Identities=22% Similarity=0.268 Sum_probs=17.6
Q ss_pred HHHhhCCCcEEEEeecCCCCCCceE
Q psy12526 69 LDNAFQGYNACIFAYGQTGEKTNYL 93 (103)
Q Consensus 69 v~~~~~G~n~ti~aYGqtgSGKT~T 93 (103)
+..+++|.+ +++.++||||||..
T Consensus 87 i~~i~~g~d--~i~~a~TGsGKT~a 109 (434)
T 2db3_A 87 IPVISSGRD--LMACAQTGSGKTAA 109 (434)
T ss_dssp HHHHHTTCC--EEEECCTTSSHHHH
T ss_pred HHHHhcCCC--EEEECCCCCCchHH
Confidence 445678877 46788999999974
No 89
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=84.90 E-value=0.43 Score=34.35 Aligned_cols=23 Identities=22% Similarity=0.320 Sum_probs=16.6
Q ss_pred HHHhhCCCcEEEEeecCCCCCCceE
Q psy12526 69 LDNAFQGYNACIFAYGQTGEKTNYL 93 (103)
Q Consensus 69 v~~~~~G~n~ti~aYGqtgSGKT~T 93 (103)
+..+++|.+ ++..++||||||..
T Consensus 52 i~~i~~~~~--~li~a~TGsGKT~~ 74 (400)
T 1s2m_A 52 IPVAITGRD--ILARAKNGTGKTAA 74 (400)
T ss_dssp HHHHHHTCC--EEEECCTTSCHHHH
T ss_pred HHHHhcCCC--EEEECCCCcHHHHH
Confidence 344556766 55688999999964
No 90
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=84.90 E-value=0.43 Score=33.93 Aligned_cols=25 Identities=16% Similarity=0.105 Sum_probs=17.2
Q ss_pred HHHhhCCCcEEEEeecCCCCCCceE
Q psy12526 69 LDNAFQGYNACIFAYGQTGEKTNYL 93 (103)
Q Consensus 69 v~~~~~G~n~ti~aYGqtgSGKT~T 93 (103)
+..+++|-.-.++..++||||||..
T Consensus 36 i~~~~~~~~~~~lv~a~TGsGKT~~ 60 (395)
T 3pey_A 36 LPLLLHNPPRNMIAQSQSGTGKTAA 60 (395)
T ss_dssp HHHHHCSSCCCEEEECCTTSCHHHH
T ss_pred HHHHHcCCCCeEEEECCCCCcHHHH
Confidence 4455666323456789999999974
No 91
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=84.89 E-value=0.17 Score=35.37 Aligned_cols=15 Identities=20% Similarity=0.315 Sum_probs=13.3
Q ss_pred EEeecCCCCCCceEe
Q psy12526 80 IFAYGQTGEKTNYLL 94 (103)
Q Consensus 80 i~aYGqtgSGKT~Tm 94 (103)
|+-||++|+|||+.+
T Consensus 76 vll~Gp~GtGKTtl~ 90 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLA 90 (278)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCcChHHHHH
Confidence 788999999999864
No 92
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=84.57 E-value=0.58 Score=33.78 Aligned_cols=23 Identities=17% Similarity=0.105 Sum_probs=17.3
Q ss_pred HHHhhCCCcEEEEeecCCCCCCceE
Q psy12526 69 LDNAFQGYNACIFAYGQTGEKTNYL 93 (103)
Q Consensus 69 v~~~~~G~n~ti~aYGqtgSGKT~T 93 (103)
+..+++|.|+ +..++||||||.+
T Consensus 46 i~~i~~~~~~--lv~a~TGsGKT~~ 68 (417)
T 2i4i_A 46 IPIIKEKRDL--MACAQTGSGKTAA 68 (417)
T ss_dssp HHHHHTTCCE--EEECCTTSCHHHH
T ss_pred HHHHccCCCE--EEEcCCCCHHHHH
Confidence 3455778774 5688999999964
No 93
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=84.44 E-value=0.61 Score=32.43 Aligned_cols=23 Identities=22% Similarity=0.255 Sum_probs=16.4
Q ss_pred HHhhCCCcEEEEeecCCCCCCceEe
Q psy12526 70 DNAFQGYNACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 70 ~~~~~G~n~ti~aYGqtgSGKT~Tm 94 (103)
..+++|.+ ++..++||+|||...
T Consensus 26 ~~i~~~~~--~lv~~~TGsGKT~~~ 48 (337)
T 2z0m_A 26 PLMLQGKN--VVVRAKTGSGKTAAY 48 (337)
T ss_dssp HHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHhcCCC--EEEEcCCCCcHHHHH
Confidence 34556766 446789999999643
No 94
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=84.25 E-value=0.4 Score=33.42 Aligned_cols=36 Identities=17% Similarity=0.185 Sum_probs=22.2
Q ss_pred CCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEe
Q psy12526 55 ASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 55 ~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm 94 (103)
..|+++.+.+. ..+ -.|....++-||+.|+|||+..
T Consensus 28 ~g~~~~~~~l~-~~l---~~~~~~~~ll~G~~G~GKT~la 63 (327)
T 1iqp_A 28 VGQEHIVKRLK-HYV---KTGSMPHLLFAGPPGVGKTTAA 63 (327)
T ss_dssp CSCHHHHHHHH-HHH---HHTCCCEEEEESCTTSSHHHHH
T ss_pred hCCHHHHHHHH-HHH---HcCCCCeEEEECcCCCCHHHHH
Confidence 35665555443 233 2343334888999999999754
No 95
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=83.94 E-value=0.3 Score=34.64 Aligned_cols=27 Identities=11% Similarity=0.182 Sum_probs=17.9
Q ss_pred HHHHhhCCCcEEEEeecCCCCCCceEe
Q psy12526 68 ILDNAFQGYNACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 68 lv~~~~~G~n~ti~aYGqtgSGKT~Tm 94 (103)
+...+..|-...++-||+.|+|||+.+
T Consensus 49 l~~~l~~~~~~~~ll~G~~G~GKT~la 75 (353)
T 1sxj_D 49 LKKTLKSANLPHMLFYGPPGTGKTSTI 75 (353)
T ss_dssp HHHHTTCTTCCCEEEECSTTSSHHHHH
T ss_pred HHHHHhcCCCCEEEEECCCCCCHHHHH
Confidence 334444553223788999999999754
No 96
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=83.61 E-value=0.41 Score=35.39 Aligned_cols=19 Identities=21% Similarity=0.249 Sum_probs=15.3
Q ss_pred CcEEEEeecCCCCCCceEe
Q psy12526 76 YNACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 76 ~n~ti~aYGqtgSGKT~Tm 94 (103)
-...+.--|.||||||.+|
T Consensus 135 ~g~~i~ivG~~GsGKTTll 153 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTI 153 (372)
T ss_dssp SSEEEEEECSSSSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 3456777899999999876
No 97
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=83.33 E-value=0.3 Score=33.44 Aligned_cols=18 Identities=17% Similarity=0.285 Sum_probs=14.5
Q ss_pred cEEEEeecCCCCCCceEe
Q psy12526 77 NACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 77 n~ti~aYGqtgSGKT~Tm 94 (103)
...|+-||++|+|||+.+
T Consensus 45 ~~~vll~G~~GtGKT~la 62 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLA 62 (257)
T ss_dssp CCEEEEECCTTSCHHHHH
T ss_pred CCeEEEECcCCCCHHHHH
Confidence 335889999999999753
No 98
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=83.04 E-value=0.92 Score=35.51 Aligned_cols=23 Identities=17% Similarity=0.306 Sum_probs=17.5
Q ss_pred HHHhhCCCcEEEEeecCCCCCCceE
Q psy12526 69 LDNAFQGYNACIFAYGQTGEKTNYL 93 (103)
Q Consensus 69 v~~~~~G~n~ti~aYGqtgSGKT~T 93 (103)
+..+++|.+ +++..+||+|||..
T Consensus 53 i~~il~g~d--~lv~~pTGsGKTl~ 75 (591)
T 2v1x_A 53 INVTMAGKE--VFLVMPTGGGKSLC 75 (591)
T ss_dssp HHHHHTTCC--EEEECCTTSCTTHH
T ss_pred HHHHHcCCC--EEEEECCCChHHHH
Confidence 445567877 56788999999964
No 99
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=83.01 E-value=0.41 Score=34.02 Aligned_cols=34 Identities=18% Similarity=0.158 Sum_probs=20.9
Q ss_pred CCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEe
Q psy12526 55 ASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 55 ~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm 94 (103)
..|+++-..+. ..+..|.+ |+-||..|+|||+.+
T Consensus 30 ~g~~~~~~~l~----~~l~~~~~--vll~G~pGtGKT~la 63 (331)
T 2r44_A 30 VGQKYMINRLL----IGICTGGH--ILLEGVPGLAKTLSV 63 (331)
T ss_dssp CSCHHHHHHHH----HHHHHTCC--EEEESCCCHHHHHHH
T ss_pred eCcHHHHHHHH----HHHHcCCe--EEEECCCCCcHHHHH
Confidence 34555544433 33344544 667999999999754
No 100
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=83.01 E-value=0.22 Score=37.48 Aligned_cols=17 Identities=35% Similarity=0.571 Sum_probs=14.4
Q ss_pred EEEeecCCCCCCceEec
Q psy12526 79 CIFAYGQTGEKTNYLLN 95 (103)
Q Consensus 79 ti~aYGqtgSGKT~Tm~ 95 (103)
.++-||.+|+|||+.+.
T Consensus 132 ~lll~Gp~G~GKTtLa~ 148 (440)
T 2z4s_A 132 PLFIYGGVGLGKTHLLQ 148 (440)
T ss_dssp CEEEECSSSSSHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 57789999999998753
No 101
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=82.77 E-value=0.79 Score=32.68 Aligned_cols=25 Identities=12% Similarity=0.337 Sum_probs=18.0
Q ss_pred HHHHhhCCCcEEEEeecCCCCCCceEe
Q psy12526 68 ILDNAFQGYNACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 68 lv~~~~~G~n~ti~aYGqtgSGKT~Tm 94 (103)
.+..+++|.+ ++..++||+|||...
T Consensus 38 ~i~~~~~~~~--~lv~a~TGsGKT~~~ 62 (391)
T 1xti_A 38 CIPQAILGMD--VLCQAKSGMGKTAVF 62 (391)
T ss_dssp HHHHHTTTCC--EEEECSSCSSHHHHH
T ss_pred HHHHHhcCCc--EEEECCCCCcHHHHH
Confidence 3455677877 455789999999753
No 102
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=82.69 E-value=0.76 Score=37.09 Aligned_cols=21 Identities=19% Similarity=0.357 Sum_probs=18.7
Q ss_pred hCCCcEEEEeecCCCCCCceE
Q psy12526 73 FQGYNACIFAYGQTGEKTNYL 93 (103)
Q Consensus 73 ~~G~n~ti~aYGqtgSGKT~T 93 (103)
.++-|-||+.-|++|||||.+
T Consensus 90 ~~~~nQsIiisGESGAGKTe~ 110 (697)
T 1lkx_A 90 QSQENQCVIISGESGAGKTEA 110 (697)
T ss_dssp HHCCCEEEEEECSTTSSHHHH
T ss_pred hcCCCcEEEecCCCCCCchhh
Confidence 368899999999999999964
No 103
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=82.57 E-value=0.75 Score=34.41 Aligned_cols=23 Identities=22% Similarity=0.394 Sum_probs=17.1
Q ss_pred HHHhhCCCcEEEEeecCCCCCCceE
Q psy12526 69 LDNAFQGYNACIFAYGQTGEKTNYL 93 (103)
Q Consensus 69 v~~~~~G~n~ti~aYGqtgSGKT~T 93 (103)
+..+++|.| ++...+||||||.+
T Consensus 16 i~~~~~~~~--~l~~~~tGsGKT~~ 38 (556)
T 4a2p_A 16 AQPAINGKN--ALICAPTGSGKTFV 38 (556)
T ss_dssp HHHHHTTCC--EEEECCTTSCHHHH
T ss_pred HHHHHcCCC--EEEEcCCCChHHHH
Confidence 445567877 45688999999965
No 104
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=82.57 E-value=0.14 Score=36.56 Aligned_cols=19 Identities=32% Similarity=0.489 Sum_probs=15.2
Q ss_pred CcEEEEeecCCCCCCceEe
Q psy12526 76 YNACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 76 ~n~ti~aYGqtgSGKT~Tm 94 (103)
-...++-||+.|+|||..+
T Consensus 44 ~~~~vli~G~~G~GKTtl~ 62 (386)
T 2qby_A 44 KPNNIFIYGLTGTGKTAVV 62 (386)
T ss_dssp CCCCEEEEECTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 3456788999999999754
No 105
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=82.48 E-value=0.84 Score=32.34 Aligned_cols=39 Identities=21% Similarity=0.152 Sum_probs=24.5
Q ss_pred CCHHHHHHHHHHHHHHHhh--CCCcEEEEeecCCCCCCceEe
Q psy12526 55 ASQEKVFDALGRDILDNAF--QGYNACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 55 ~~q~~v~~~~~~~lv~~~~--~G~n~ti~aYGqtgSGKT~Tm 94 (103)
..++.+...+. .++..+. ......|+-||++|+|||+..
T Consensus 32 iG~~~~~~~l~-~~l~~~~~~~~~~~~vll~G~~GtGKT~la 72 (338)
T 3pfi_A 32 IGQESIKKNLN-VFIAAAKKRNECLDHILFSGPAGLGKTTLA 72 (338)
T ss_dssp CSCHHHHHHHH-HHHHHHHHTTSCCCCEEEECSTTSSHHHHH
T ss_pred CChHHHHHHHH-HHHHHHHhcCCCCCeEEEECcCCCCHHHHH
Confidence 35555655543 4444443 233446888999999999754
No 106
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=82.44 E-value=0.27 Score=35.85 Aligned_cols=19 Identities=16% Similarity=0.254 Sum_probs=15.4
Q ss_pred CcEEEEeecCCCCCCceEe
Q psy12526 76 YNACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 76 ~n~ti~aYGqtgSGKT~Tm 94 (103)
....|+-||++|+|||+.+
T Consensus 116 ~~~~vLl~GppGtGKT~la 134 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIG 134 (357)
T ss_dssp CCSEEEEESSTTSSHHHHH
T ss_pred CCceEEEECCCCCCHHHHH
Confidence 3456888999999999754
No 107
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=82.34 E-value=0.45 Score=36.19 Aligned_cols=24 Identities=8% Similarity=0.014 Sum_probs=17.1
Q ss_pred HHhhCCCcEEEEeecCCCCCCceE
Q psy12526 70 DNAFQGYNACIFAYGQTGEKTNYL 93 (103)
Q Consensus 70 ~~~~~G~n~ti~aYGqtgSGKT~T 93 (103)
..+++|-+-.++..+.||||||.+
T Consensus 151 ~~i~~~~~~~~ll~apTGsGKT~~ 174 (508)
T 3fho_A 151 PLLLSNPPRNMIGQSQSGTGKTAA 174 (508)
T ss_dssp HHHHCSSCCCEEEECCSSTTSHHH
T ss_pred HHHHcCCCCCEEEECCCCccHHHH
Confidence 455666223456789999999985
No 108
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=81.97 E-value=0.37 Score=33.44 Aligned_cols=17 Identities=24% Similarity=0.284 Sum_probs=13.9
Q ss_pred EEEEeecCCCCCCceEe
Q psy12526 78 ACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 78 ~ti~aYGqtgSGKT~Tm 94 (103)
..++-||++|+|||+.+
T Consensus 51 ~~vll~G~~GtGKT~la 67 (310)
T 1ofh_A 51 KNILMIGPTGVGKTEIA 67 (310)
T ss_dssp CCEEEECCTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 45778999999999754
No 109
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=81.93 E-value=0.83 Score=37.32 Aligned_cols=21 Identities=14% Similarity=0.186 Sum_probs=18.5
Q ss_pred hCCCcEEEEeecCCCCCCceE
Q psy12526 73 FQGYNACIFAYGQTGEKTNYL 93 (103)
Q Consensus 73 ~~G~n~ti~aYGqtgSGKT~T 93 (103)
.++-|-||+.-|++|||||.+
T Consensus 136 ~~~~nQsIiiSGESGAGKTe~ 156 (784)
T 2v26_A 136 VLKLSQSIIVSGESGAGKTEN 156 (784)
T ss_dssp HHTCCEEEEEECSTTSSHHHH
T ss_pred hcCCCcEEEEcCCCCCCceeh
Confidence 358899999999999999964
No 110
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=81.91 E-value=0.84 Score=37.29 Aligned_cols=21 Identities=14% Similarity=0.156 Sum_probs=18.7
Q ss_pred hCCCcEEEEeecCCCCCCceE
Q psy12526 73 FQGYNACIFAYGQTGEKTNYL 93 (103)
Q Consensus 73 ~~G~n~ti~aYGqtgSGKT~T 93 (103)
.++-|-||+.-|++|||||.+
T Consensus 168 ~~~~nQsIiisGESGAGKTe~ 188 (770)
T 1w9i_A 168 DDRQNQSLLITGESGAGKTEN 188 (770)
T ss_dssp HHCCCEEEEEECSTTSSHHHH
T ss_pred hhcCCcEEEEecCCCCcchHH
Confidence 358899999999999999964
No 111
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=81.63 E-value=0.84 Score=35.56 Aligned_cols=23 Identities=22% Similarity=0.303 Sum_probs=16.8
Q ss_pred HHHhhCCCcEEEEeecCCCCCCceE
Q psy12526 69 LDNAFQGYNACIFAYGQTGEKTNYL 93 (103)
Q Consensus 69 v~~~~~G~n~ti~aYGqtgSGKT~T 93 (103)
+..+++|.|+ +..++||||||..
T Consensus 22 i~~~l~g~~~--iv~~~TGsGKTl~ 44 (696)
T 2ykg_A 22 ALPAMKGKNT--IICAPTGCGKTFV 44 (696)
T ss_dssp HHHHHTTCCE--EEECCTTSSHHHH
T ss_pred HHHHHcCCCE--EEEcCCCchHHHH
Confidence 3445678774 5688999999963
No 112
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=81.45 E-value=0.98 Score=38.24 Aligned_cols=21 Identities=14% Similarity=0.185 Sum_probs=18.7
Q ss_pred hCCCcEEEEeecCCCCCCceE
Q psy12526 73 FQGYNACIFAYGQTGEKTNYL 93 (103)
Q Consensus 73 ~~G~n~ti~aYGqtgSGKT~T 93 (103)
.++-|-||+.-|.+|||||.+
T Consensus 165 ~~~~~Q~i~isGeSGaGKTe~ 185 (1184)
T 1i84_S 165 QDREDQSILCTGESGAGKTEN 185 (1184)
T ss_dssp HHTCCEEEECCCSTTSSTTHH
T ss_pred hcCCCcEEEEecCCCCCccHH
Confidence 358899999999999999964
No 113
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=81.43 E-value=1 Score=34.60 Aligned_cols=26 Identities=12% Similarity=0.235 Sum_probs=18.2
Q ss_pred HHHHhhCCCcEEEEeecCCCCCCceE
Q psy12526 68 ILDNAFQGYNACIFAYGQTGEKTNYL 93 (103)
Q Consensus 68 lv~~~~~G~n~ti~aYGqtgSGKT~T 93 (103)
.+..++.+-+--+++..+||||||..
T Consensus 51 ~i~~il~~~~~dvlv~apTGsGKTl~ 76 (579)
T 3sqw_A 51 TIKPILSSEDHDVIARAKTGTGKTFA 76 (579)
T ss_dssp HHHHHHCSSSEEEEEECCTTSCHHHH
T ss_pred HHHHHHccCCCeEEEEcCCCcHHHHH
Confidence 34455644445577899999999974
No 114
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=81.37 E-value=1.7 Score=30.15 Aligned_cols=38 Identities=21% Similarity=0.282 Sum_probs=23.7
Q ss_pred CHHHHHHHHHHHHHHHhhCCC------cEEEEeecCCCCCCceEe
Q psy12526 56 SQEKVFDALGRDILDNAFQGY------NACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 56 ~q~~v~~~~~~~lv~~~~~G~------n~ti~aYGqtgSGKT~Tm 94 (103)
.|+.+.+.+... +.....|. ...++-+|++|+|||+..
T Consensus 21 G~~~~~~~l~~~-i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la 64 (311)
T 4fcw_A 21 GQDEAIRAVADA-IRRARAGLKDPNRPIGSFLFLGPTGVGKTELA 64 (311)
T ss_dssp SCHHHHHHHHHH-HHHHHHTCSCTTSCSEEEEEESCSSSSHHHHH
T ss_pred CHHHHHHHHHHH-HHHHhcCCCCCCCCceEEEEECCCCcCHHHHH
Confidence 566666555433 33332221 357888999999999754
No 115
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=81.19 E-value=1 Score=29.93 Aligned_cols=29 Identities=14% Similarity=0.114 Sum_probs=17.4
Q ss_pred HHHHHHhhC--CCcEEEEeecCCCCCCceEe
Q psy12526 66 RDILDNAFQ--GYNACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 66 ~~lv~~~~~--G~n~ti~aYGqtgSGKT~Tm 94 (103)
..+++.+.+ .-.-.|---|.+|||||..+
T Consensus 9 ~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~ 39 (208)
T 3c8u_A 9 QGVLERLDPRQPGRQLVALSGAPGSGKSTLS 39 (208)
T ss_dssp HHHHHHSCTTCCSCEEEEEECCTTSCTHHHH
T ss_pred HHHHHHHHhcCCCCeEEEEECCCCCCHHHHH
Confidence 344444442 22334555799999999753
No 116
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=81.18 E-value=1 Score=32.22 Aligned_cols=27 Identities=7% Similarity=0.133 Sum_probs=20.8
Q ss_pred HHHHHhhCCC---cEEEEeecCCCCCCceE
Q psy12526 67 DILDNAFQGY---NACIFAYGQTGEKTNYL 93 (103)
Q Consensus 67 ~lv~~~~~G~---n~ti~aYGqtgSGKT~T 93 (103)
..+...++|. --||+-||+.|+|||+.
T Consensus 91 ~~l~~~l~~~~~~~n~~~l~GppgtGKt~~ 120 (267)
T 1u0j_A 91 SVFLGWATKKFGKRNTIWLFGPATTGKTNI 120 (267)
T ss_dssp HHHHHHHTTCSTTCCEEEEECSTTSSHHHH
T ss_pred HHHHHHHhCCCCCCcEEEEECCCCCCHHHH
Confidence 4466777776 34799999999999874
No 117
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=81.12 E-value=0.53 Score=31.49 Aligned_cols=28 Identities=18% Similarity=0.253 Sum_probs=19.1
Q ss_pred HHHHHhhCC-C--cEEEEeecCCCCCCceEe
Q psy12526 67 DILDNAFQG-Y--NACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 67 ~lv~~~~~G-~--n~ti~aYGqtgSGKT~Tm 94 (103)
+-++.++.| + ...+.-+|.+|+|||..+
T Consensus 11 ~~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~ 41 (243)
T 1n0w_A 11 KELDKLLQGGIETGSITEMFGEFRTGKTQIC 41 (243)
T ss_dssp HHHHHHTTTSEETTSEEEEECCTTSSHHHHH
T ss_pred hHHHHhhcCCCcCCeEEEEECCCCCcHHHHH
Confidence 445666643 2 345667899999999864
No 118
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=80.96 E-value=1.3 Score=33.45 Aligned_cols=38 Identities=8% Similarity=0.098 Sum_probs=22.4
Q ss_pred CCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEec
Q psy12526 54 FASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLN 95 (103)
Q Consensus 54 ~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~ 95 (103)
-..++.....+ +..+...-...++-||.+|+|||+...
T Consensus 182 iiGr~~~i~~l----~~~l~r~~~~~~LL~G~pG~GKT~la~ 219 (468)
T 3pxg_A 182 VIGRSKEIQRV----IEVLSRRTKNNPVLIGEPGVGKTAIAE 219 (468)
T ss_dssp CCCCHHHHHHH----HHHHHCSSSCEEEEESCTTTTTHHHHH
T ss_pred ccCcHHHHHHH----HHHHhccCCCCeEEECCCCCCHHHHHH
Confidence 34555444443 333333334456779999999998543
No 119
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=80.78 E-value=0.97 Score=37.01 Aligned_cols=21 Identities=19% Similarity=0.235 Sum_probs=18.6
Q ss_pred hCCCcEEEEeecCCCCCCceE
Q psy12526 73 FQGYNACIFAYGQTGEKTNYL 93 (103)
Q Consensus 73 ~~G~n~ti~aYGqtgSGKT~T 93 (103)
.++-|-||+.-|++|||||.+
T Consensus 152 ~~~~nQsIiisGESGAGKTe~ 172 (795)
T 1w7j_A 152 RDERNQSIIVSGESGAGKTVS 172 (795)
T ss_dssp HHTCCEEEEEECSTTSSHHHH
T ss_pred hcCCCeEEEEeCCCCCCcchH
Confidence 358899999999999999964
No 120
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=80.75 E-value=0.48 Score=33.53 Aligned_cols=18 Identities=22% Similarity=0.399 Sum_probs=14.6
Q ss_pred cEEEEeecCCCCCCceEe
Q psy12526 77 NACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 77 n~ti~aYGqtgSGKT~Tm 94 (103)
...|+-||++|+|||+.+
T Consensus 49 ~~~vLL~Gp~GtGKT~la 66 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLA 66 (301)
T ss_dssp CSEEEEECSSSSSHHHHH
T ss_pred CceEEEECCCCcCHHHHH
Confidence 346788999999999754
No 121
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=80.64 E-value=0.31 Score=35.13 Aligned_cols=15 Identities=20% Similarity=0.277 Sum_probs=12.4
Q ss_pred EEeecCCCCCCceEe
Q psy12526 80 IFAYGQTGEKTNYLL 94 (103)
Q Consensus 80 i~aYGqtgSGKT~Tm 94 (103)
++-||++|+|||+.+
T Consensus 54 ~ll~Gp~G~GKTTLa 68 (334)
T 1in4_A 54 VLLAGPPGLGKTTLA 68 (334)
T ss_dssp EEEESSTTSSHHHHH
T ss_pred EEEECCCCCcHHHHH
Confidence 556999999999854
No 122
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=80.54 E-value=0.8 Score=33.03 Aligned_cols=25 Identities=16% Similarity=0.291 Sum_probs=18.8
Q ss_pred HHhhCC---CcEEEEe--ecCCCCCCceEe
Q psy12526 70 DNAFQG---YNACIFA--YGQTGEKTNYLL 94 (103)
Q Consensus 70 ~~~~~G---~n~ti~a--YGqtgSGKT~Tm 94 (103)
..+..| -...++- ||..|+|||..+
T Consensus 40 ~~~~~~~~~~~~~~li~i~G~~G~GKT~L~ 69 (412)
T 1w5s_A 40 NRLLSGAGLSDVNMIYGSIGRVGIGKTTLA 69 (412)
T ss_dssp HHHHTSSCBCCEEEEEECTTCCSSSHHHHH
T ss_pred HHHhcCCCCCCCEEEEeCcCcCCCCHHHHH
Confidence 555555 4567888 999999999754
No 123
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=80.45 E-value=0.9 Score=37.41 Aligned_cols=21 Identities=14% Similarity=0.115 Sum_probs=18.6
Q ss_pred hCCCcEEEEeecCCCCCCceE
Q psy12526 73 FQGYNACIFAYGQTGEKTNYL 93 (103)
Q Consensus 73 ~~G~n~ti~aYGqtgSGKT~T 93 (103)
.++-|-||+.-|++|||||.+
T Consensus 165 ~~~~nQsIiiSGESGAGKTe~ 185 (837)
T 1kk8_A 165 TDRENQSCLITGESGAGKTEN 185 (837)
T ss_dssp HHTSEEEEEEECSTTSSHHHH
T ss_pred hcCCCcEEEEeCCCCCCchhh
Confidence 358899999999999999974
No 124
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=80.21 E-value=0.93 Score=35.33 Aligned_cols=23 Identities=26% Similarity=0.261 Sum_probs=17.2
Q ss_pred HHHhhCCCcEEEEeecCCCCCCceE
Q psy12526 69 LDNAFQGYNACIFAYGQTGEKTNYL 93 (103)
Q Consensus 69 v~~~~~G~n~ti~aYGqtgSGKT~T 93 (103)
+..+++|.+ ++..++||+|||.+
T Consensus 16 i~~il~g~~--~ll~~~TGsGKTl~ 38 (699)
T 4gl2_A 16 AQPALEGKN--IIICLPTGCGKTRV 38 (699)
T ss_dssp HHHHHSSCC--EEECCCTTSCHHHH
T ss_pred HHHHHhCCC--EEEEcCCCCcHHHH
Confidence 445566777 45689999999975
No 125
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=80.19 E-value=0.52 Score=32.83 Aligned_cols=18 Identities=17% Similarity=0.414 Sum_probs=14.8
Q ss_pred cEEEEeecCCCCCCceEe
Q psy12526 77 NACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 77 n~ti~aYGqtgSGKT~Tm 94 (103)
...|+-||++|+|||+.+
T Consensus 54 ~~~vll~Gp~GtGKT~la 71 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLA 71 (297)
T ss_dssp CSEEEEESSSSSCHHHHH
T ss_pred CCeEEEECcCCCCHHHHH
Confidence 457888999999999753
No 126
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=80.18 E-value=0.95 Score=37.97 Aligned_cols=21 Identities=14% Similarity=0.156 Sum_probs=18.7
Q ss_pred hCCCcEEEEeecCCCCCCceE
Q psy12526 73 FQGYNACIFAYGQTGEKTNYL 93 (103)
Q Consensus 73 ~~G~n~ti~aYGqtgSGKT~T 93 (103)
.++-|-||+.-|++|||||.+
T Consensus 168 ~~~~~QsIiisGESGAGKTe~ 188 (1010)
T 1g8x_A 168 DDRQNQSLLITGESGAGKTEN 188 (1010)
T ss_dssp HHTCCEEEEEEESTTSSHHHH
T ss_pred hcCCCeEEEEeCCCCCCcchH
Confidence 358899999999999999964
No 127
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=80.16 E-value=1 Score=33.52 Aligned_cols=23 Identities=22% Similarity=0.232 Sum_probs=16.9
Q ss_pred HHHhhCCCcEEEEeecCCCCCCceE
Q psy12526 69 LDNAFQGYNACIFAYGQTGEKTNYL 93 (103)
Q Consensus 69 v~~~~~G~n~ti~aYGqtgSGKT~T 93 (103)
+..+++|.|+ +...+||||||.+
T Consensus 13 i~~~~~~~~~--l~~~~tGsGKT~~ 35 (555)
T 3tbk_A 13 ALPAKKGKNT--IICAPTGCGKTFV 35 (555)
T ss_dssp HHHHHTTCCE--EEECCTTSCHHHH
T ss_pred HHHHhCCCCE--EEEeCCCChHHHH
Confidence 3455678774 5679999999965
No 128
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=79.92 E-value=1 Score=37.72 Aligned_cols=21 Identities=14% Similarity=0.185 Sum_probs=18.7
Q ss_pred hCCCcEEEEeecCCCCCCceE
Q psy12526 73 FQGYNACIFAYGQTGEKTNYL 93 (103)
Q Consensus 73 ~~G~n~ti~aYGqtgSGKT~T 93 (103)
.++-|-||+.-|++|||||.+
T Consensus 142 ~~~~~QsIiisGESGAGKTe~ 162 (995)
T 2ycu_A 142 QDREDQSILCTGESGAGKTEN 162 (995)
T ss_dssp HHCCCEEEEEECBTTSSHHHH
T ss_pred hcCCCcEEEecCCCCCCchhh
Confidence 368899999999999999964
No 129
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=79.71 E-value=0.65 Score=34.84 Aligned_cols=24 Identities=8% Similarity=0.004 Sum_probs=18.3
Q ss_pred HHHhhCCCcEEEEeecCCCCCCceE
Q psy12526 69 LDNAFQGYNACIFAYGQTGEKTNYL 93 (103)
Q Consensus 69 v~~~~~G~n~ti~aYGqtgSGKT~T 93 (103)
+..+++|.+. ++..++||||||..
T Consensus 12 i~~~l~~~~~-~lv~a~TGsGKT~~ 35 (451)
T 2jlq_A 12 DEDIFRKKRL-TIMDLHPGAGKTKR 35 (451)
T ss_dssp CGGGGSTTCE-EEECCCTTSSCCTT
T ss_pred HHHHHhcCCe-EEEECCCCCCHhhH
Confidence 3556788775 45789999999974
No 130
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=79.71 E-value=0.71 Score=31.35 Aligned_cols=25 Identities=20% Similarity=0.263 Sum_probs=16.3
Q ss_pred HHHHhhCCCcEEEEeecCCCCCCceEe
Q psy12526 68 ILDNAFQGYNACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 68 lv~~~~~G~n~ti~aYGqtgSGKT~Tm 94 (103)
+++.+-.|--.+ -.|.+|||||..+
T Consensus 15 ~l~~i~~Ge~~~--liG~nGsGKSTLl 39 (208)
T 3b85_A 15 YVDAIDTNTIVF--GLGPAGSGKTYLA 39 (208)
T ss_dssp HHHHHHHCSEEE--EECCTTSSTTHHH
T ss_pred HHHhccCCCEEE--EECCCCCCHHHHH
Confidence 344444554444 3799999999754
No 131
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=79.41 E-value=0.56 Score=33.46 Aligned_cols=17 Identities=35% Similarity=0.690 Sum_probs=14.2
Q ss_pred EEEEeecCCCCCCceEe
Q psy12526 78 ACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 78 ~ti~aYGqtgSGKT~Tm 94 (103)
..|+-||..|+|||+..
T Consensus 52 ~~vLl~GppGtGKT~la 68 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLA 68 (322)
T ss_dssp CEEEEECSSSSCHHHHH
T ss_pred CeEEEECCCCCcHHHHH
Confidence 45888999999999754
No 132
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=79.39 E-value=1.2 Score=29.51 Aligned_cols=18 Identities=11% Similarity=-0.012 Sum_probs=13.8
Q ss_pred cEEEEeecCCCCCCceEe
Q psy12526 77 NACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 77 n~ti~aYGqtgSGKT~Tm 94 (103)
...|.-.|.+|||||..+
T Consensus 22 ~~~i~i~G~~GsGKstl~ 39 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLA 39 (201)
T ss_dssp SEEEEEEECTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 345667899999998753
No 133
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=79.29 E-value=0.69 Score=32.09 Aligned_cols=21 Identities=10% Similarity=0.060 Sum_probs=15.5
Q ss_pred CCCcEEEEeecCCCCCCceEe
Q psy12526 74 QGYNACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 74 ~G~n~ti~aYGqtgSGKT~Tm 94 (103)
.|-...++-||+.|+|||+..
T Consensus 35 ~~~~~~~ll~G~~G~GKt~la 55 (319)
T 2chq_A 35 RKNIPHLLFSGPPGTGKTATA 55 (319)
T ss_dssp TTCCCCEEEESSSSSSHHHHH
T ss_pred CCCCCeEEEECcCCcCHHHHH
Confidence 344333888999999999754
No 134
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=79.28 E-value=1.1 Score=37.76 Aligned_cols=21 Identities=19% Similarity=0.235 Sum_probs=18.6
Q ss_pred hCCCcEEEEeecCCCCCCceE
Q psy12526 73 FQGYNACIFAYGQTGEKTNYL 93 (103)
Q Consensus 73 ~~G~n~ti~aYGqtgSGKT~T 93 (103)
.++-|-||+.-|++|||||.+
T Consensus 152 ~~~~~QsIiisGESGAGKTe~ 172 (1080)
T 2dfs_A 152 RDERNQSIIVSGESGAGKTVS 172 (1080)
T ss_dssp HHTCCEEEEEECSTTSSHHHH
T ss_pred hcCCCcEEEEcCCCCCCccch
Confidence 358899999999999999964
No 135
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=78.94 E-value=0.77 Score=32.72 Aligned_cols=18 Identities=17% Similarity=0.399 Sum_probs=14.7
Q ss_pred CcEEEEeecCCCCCCceE
Q psy12526 76 YNACIFAYGQTGEKTNYL 93 (103)
Q Consensus 76 ~n~ti~aYGqtgSGKT~T 93 (103)
.+..|+-+|++|+|||+.
T Consensus 24 ~~~~vLi~Ge~GtGKt~l 41 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELV 41 (304)
T ss_dssp TTSCEEEESCTTSCHHHH
T ss_pred CCCcEEEECCCCchHHHH
Confidence 355678899999999874
No 136
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=78.84 E-value=1.2 Score=37.61 Aligned_cols=21 Identities=14% Similarity=0.186 Sum_probs=18.7
Q ss_pred hCCCcEEEEeecCCCCCCceE
Q psy12526 73 FQGYNACIFAYGQTGEKTNYL 93 (103)
Q Consensus 73 ~~G~n~ti~aYGqtgSGKT~T 93 (103)
.++-|-||+.-|++|||||.+
T Consensus 140 ~~~~nQsIiiSGESGAGKTes 160 (1052)
T 4anj_A 140 VLKLSQSIIVSGESGAGKTEN 160 (1052)
T ss_dssp HHTCCEEEEEECSTTSSHHHH
T ss_pred HhCCCceEEEecCCCCCHHHH
Confidence 358899999999999999964
No 137
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=78.66 E-value=0.84 Score=33.13 Aligned_cols=21 Identities=24% Similarity=0.275 Sum_probs=15.2
Q ss_pred hhCCCcEEEEeecCCCCCCceEe
Q psy12526 72 AFQGYNACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 72 ~~~G~n~ti~aYGqtgSGKT~Tm 94 (103)
+-.|-+.. --|.||||||.++
T Consensus 168 i~~g~~v~--i~G~~GsGKTTll 188 (330)
T 2pt7_A 168 IAIGKNVI--VCGGTGSGKTTYI 188 (330)
T ss_dssp HHHTCCEE--EEESTTSCHHHHH
T ss_pred ccCCCEEE--EECCCCCCHHHHH
Confidence 44566554 4799999999754
No 138
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*
Probab=78.13 E-value=1.8 Score=35.45 Aligned_cols=21 Identities=19% Similarity=0.221 Sum_probs=18.7
Q ss_pred hCCCcEEEEeecCCCCCCceE
Q psy12526 73 FQGYNACIFAYGQTGEKTNYL 93 (103)
Q Consensus 73 ~~G~n~ti~aYGqtgSGKT~T 93 (103)
.++-|-||+.-|++|+|||.+
T Consensus 167 ~~~~nQsIiiSGESGAGKTe~ 187 (783)
T 4db1_A 167 TDRENQSILITGESGAGKTVN 187 (783)
T ss_dssp HHTCCEEEEEECSTTSSHHHH
T ss_pred hhCCCceEEEeCCCCCCCchH
Confidence 368899999999999999974
No 139
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=78.10 E-value=0.45 Score=30.87 Aligned_cols=17 Identities=12% Similarity=0.286 Sum_probs=13.1
Q ss_pred EEEeecCCCCCCceEec
Q psy12526 79 CIFAYGQTGEKTNYLLN 95 (103)
Q Consensus 79 ti~aYGqtgSGKT~Tm~ 95 (103)
.+.-.|.+|||||..+-
T Consensus 11 i~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAK 27 (171)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 45567999999998653
No 140
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=78.02 E-value=0.6 Score=33.72 Aligned_cols=23 Identities=13% Similarity=0.059 Sum_probs=16.5
Q ss_pred HHHhhCCCcEEEEeecCCCCCCceEe
Q psy12526 69 LDNAFQGYNACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 69 v~~~~~G~n~ti~aYGqtgSGKT~Tm 94 (103)
+..++++ + ++...+||+|||.+.
T Consensus 18 i~~~~~~-~--~ll~~~tG~GKT~~~ 40 (494)
T 1wp9_A 18 YAKCKET-N--CLIVLPTGLGKTLIA 40 (494)
T ss_dssp HHHGGGS-C--EEEECCTTSCHHHHH
T ss_pred HHHHhhC-C--EEEEcCCCCCHHHHH
Confidence 4556677 4 345789999999754
No 141
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=77.98 E-value=0.41 Score=33.70 Aligned_cols=15 Identities=20% Similarity=0.315 Sum_probs=12.9
Q ss_pred EEeecCCCCCCceEe
Q psy12526 80 IFAYGQTGEKTNYLL 94 (103)
Q Consensus 80 i~aYGqtgSGKT~Tm 94 (103)
++-||+.|+|||+.+
T Consensus 47 vlL~Gp~GtGKTtLa 61 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLA 61 (274)
T ss_dssp EEEESSTTSCHHHHH
T ss_pred EEEECCCCCcHHHHH
Confidence 788999999999753
No 142
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=77.96 E-value=0.57 Score=33.41 Aligned_cols=23 Identities=17% Similarity=0.271 Sum_probs=16.7
Q ss_pred HHHhhCCCcEEEEeecCCCCCCceE
Q psy12526 69 LDNAFQGYNACIFAYGQTGEKTNYL 93 (103)
Q Consensus 69 v~~~~~G~n~ti~aYGqtgSGKT~T 93 (103)
+..+++|.+ ++..++||||||.+
T Consensus 52 i~~i~~~~~--~lv~~~TGsGKT~~ 74 (394)
T 1fuu_A 52 IMPIIEGHD--VLAQAQSGTGKTGT 74 (394)
T ss_dssp HHHHHHTCC--EEECCCSSHHHHHH
T ss_pred HHHHhCCCC--EEEECCCCChHHHH
Confidence 344566766 45678999999975
No 143
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=77.86 E-value=0.54 Score=32.67 Aligned_cols=16 Identities=19% Similarity=0.590 Sum_probs=13.8
Q ss_pred EEEEeecCCCCCCceE
Q psy12526 78 ACIFAYGQTGEKTNYL 93 (103)
Q Consensus 78 ~ti~aYGqtgSGKT~T 93 (103)
-+++-||..|+|||+.
T Consensus 59 n~ili~GPPGtGKTt~ 74 (212)
T 1tue_A 59 NCLVFCGPANTGKSYF 74 (212)
T ss_dssp SEEEEESCGGGCHHHH
T ss_pred cEEEEECCCCCCHHHH
Confidence 3588999999999975
No 144
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=77.62 E-value=1.3 Score=30.42 Aligned_cols=16 Identities=25% Similarity=0.382 Sum_probs=13.2
Q ss_pred EEEEeecCCCCCCceE
Q psy12526 78 ACIFAYGQTGEKTNYL 93 (103)
Q Consensus 78 ~ti~aYGqtgSGKT~T 93 (103)
..|+-.|..|||||..
T Consensus 33 ~~i~l~G~~GsGKSTl 48 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTI 48 (253)
T ss_dssp EEEEEESCGGGTTHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4677889999999863
No 145
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=77.59 E-value=0.69 Score=33.23 Aligned_cols=17 Identities=29% Similarity=0.604 Sum_probs=14.0
Q ss_pred EEEEeecCCCCCCceEe
Q psy12526 78 ACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 78 ~ti~aYGqtgSGKT~Tm 94 (103)
-.|+-||+.|+|||+.+
T Consensus 46 ~~iLL~GppGtGKT~la 62 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLA 62 (322)
T ss_dssp SEEEEESSSSSCHHHHH
T ss_pred ceEEEECCCCccHHHHH
Confidence 35788999999999754
No 146
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=77.55 E-value=0.73 Score=32.01 Aligned_cols=13 Identities=8% Similarity=-0.087 Sum_probs=11.0
Q ss_pred eecCCCCCCceEe
Q psy12526 82 AYGQTGEKTNYLL 94 (103)
Q Consensus 82 aYGqtgSGKT~Tm 94 (103)
..++||+|||.+.
T Consensus 133 l~~~tGsGKT~~~ 145 (282)
T 1rif_A 133 LNLPTSAGRSLIQ 145 (282)
T ss_dssp ECCCTTSCHHHHH
T ss_pred EEcCCCCCcHHHH
Confidence 3899999999764
No 147
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=77.29 E-value=0.56 Score=33.39 Aligned_cols=15 Identities=20% Similarity=0.423 Sum_probs=13.2
Q ss_pred EEeecCCCCCCceEe
Q psy12526 80 IFAYGQTGEKTNYLL 94 (103)
Q Consensus 80 i~aYGqtgSGKT~Tm 94 (103)
++-||++|+|||+.+
T Consensus 39 ~ll~Gp~G~GKTtl~ 53 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRC 53 (354)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 777999999999865
No 148
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=77.28 E-value=1 Score=34.15 Aligned_cols=40 Identities=18% Similarity=0.332 Sum_probs=24.2
Q ss_pred CCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEe
Q psy12526 54 FASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 54 ~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm 94 (103)
...|+.+... ...+...+-.|.-..++-||++|+|||+..
T Consensus 28 ivGq~~~~~~-~~~L~~~i~~~~~~~vLL~GppGtGKTtlA 67 (447)
T 3pvs_A 28 YIGQQHLLAA-GKPLPRAIEAGHLHSMILWGPPGTGKTTLA 67 (447)
T ss_dssp CCSCHHHHST-TSHHHHHHHHTCCCEEEEECSTTSSHHHHH
T ss_pred hCCcHHHHhc-hHHHHHHHHcCCCcEEEEECCCCCcHHHHH
Confidence 4466666531 123333333444457888999999999753
No 149
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=77.19 E-value=1.2 Score=34.34 Aligned_cols=25 Identities=24% Similarity=0.384 Sum_probs=17.2
Q ss_pred HHHHhhCCCcEEEEeecCCCCCCceEe
Q psy12526 68 ILDNAFQGYNACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 68 lv~~~~~G~n~ti~aYGqtgSGKT~Tm 94 (103)
++..++.|. -|+-||..|+|||+..
T Consensus 34 l~~al~~~~--~VLL~GpPGtGKT~LA 58 (500)
T 3nbx_X 34 CLLAALSGE--SVFLLGPPGIAKSLIA 58 (500)
T ss_dssp HHHHHHHTC--EEEEECCSSSSHHHHH
T ss_pred HHHHHhcCC--eeEeecCchHHHHHHH
Confidence 334445554 4667999999999753
No 150
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=76.95 E-value=1 Score=32.98 Aligned_cols=22 Identities=18% Similarity=0.197 Sum_probs=16.2
Q ss_pred HhhCCCcEEEEeecCCCCCCceEe
Q psy12526 71 NAFQGYNACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 71 ~~~~G~n~ti~aYGqtgSGKT~Tm 94 (103)
.+-.|-+..| -|.||||||.++
T Consensus 171 ~i~~G~~i~i--vG~sGsGKSTll 192 (361)
T 2gza_A 171 AVQLERVIVV--AGETGSGKTTLM 192 (361)
T ss_dssp HHHTTCCEEE--EESSSSCHHHHH
T ss_pred HHhcCCEEEE--ECCCCCCHHHHH
Confidence 3456776554 699999999854
No 151
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=76.44 E-value=1.1 Score=29.57 Aligned_cols=28 Identities=25% Similarity=0.360 Sum_probs=18.6
Q ss_pred HHHHHhhC-CC--cEEEEeecCCCCCCceEe
Q psy12526 67 DILDNAFQ-GY--NACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 67 ~lv~~~~~-G~--n~ti~aYGqtgSGKT~Tm 94 (103)
+-++.++. |. ...+.-.|++|||||..+
T Consensus 12 ~~LD~~l~ggi~~G~~~~l~G~nGsGKSTll 42 (231)
T 4a74_A 12 KSLDKLLGGGIETQAITEVFGEFGSGKTQLA 42 (231)
T ss_dssp HHHHHHTTSSEESSEEEEEEESTTSSHHHHH
T ss_pred hhHHhHhcCCCCCCcEEEEECCCCCCHHHHH
Confidence 34566663 33 245566899999999754
No 152
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=76.37 E-value=1.4 Score=32.66 Aligned_cols=23 Identities=9% Similarity=-0.090 Sum_probs=16.1
Q ss_pred HHhhCCCcEEEEeecCCCCCCceEe
Q psy12526 70 DNAFQGYNACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 70 ~~~~~G~n~ti~aYGqtgSGKT~Tm 94 (103)
..++++.+ ++..+.||+|||.+.
T Consensus 103 ~~i~~~~~--~ll~~~TGsGKT~~~ 125 (472)
T 2fwr_A 103 ERWLVDKR--GCIVLPTGSGKTHVA 125 (472)
T ss_dssp HHHTTTTE--EEEECCTTSCHHHHH
T ss_pred HHHHhcCC--EEEEeCCCCCHHHHH
Confidence 44555554 556789999999754
No 153
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=76.37 E-value=1.2 Score=31.38 Aligned_cols=18 Identities=11% Similarity=0.074 Sum_probs=14.7
Q ss_pred cEEEEeecCCCCCCceEe
Q psy12526 77 NACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 77 n~ti~aYGqtgSGKT~Tm 94 (103)
...++-||+.|+|||+.+
T Consensus 48 ~~~~L~~G~~G~GKT~la 65 (324)
T 3u61_B 48 PHIILHSPSPGTGKTTVA 65 (324)
T ss_dssp CSEEEECSSTTSSHHHHH
T ss_pred CeEEEeeCcCCCCHHHHH
Confidence 346788999999999864
No 154
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=76.36 E-value=0.45 Score=35.26 Aligned_cols=18 Identities=28% Similarity=0.425 Sum_probs=14.5
Q ss_pred cEEEEeecCCCCCCceEe
Q psy12526 77 NACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 77 n~ti~aYGqtgSGKT~Tm 94 (103)
+.-++..|.||||||.++
T Consensus 53 ~~h~~i~G~tGsGKs~~~ 70 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLL 70 (437)
T ss_dssp GGCEEEEECTTSSHHHHH
T ss_pred cceEEEECCCCCCHHHHH
Confidence 344677999999999875
No 155
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=76.24 E-value=0.63 Score=35.14 Aligned_cols=23 Identities=17% Similarity=0.434 Sum_probs=19.2
Q ss_pred hhCCCcEEEEeecCCCCCCceEe
Q psy12526 72 AFQGYNACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 72 ~~~G~n~ti~aYGqtgSGKT~Tm 94 (103)
+++|++..|.-.|.+|+|||..|
T Consensus 26 vl~~vsf~I~lvG~sGaGKSTLl 48 (418)
T 2qag_C 26 VKRGFEFTLMVVGESGLGKSTLI 48 (418)
T ss_dssp CC-CCCEEEEEECCTTSSHHHHH
T ss_pred EecCCCEEEEEECCCCCcHHHHH
Confidence 68899999988999999999743
No 156
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=76.22 E-value=1.3 Score=30.75 Aligned_cols=15 Identities=13% Similarity=0.173 Sum_probs=13.0
Q ss_pred EEeecCCCCCCceEe
Q psy12526 80 IFAYGQTGEKTNYLL 94 (103)
Q Consensus 80 i~aYGqtgSGKT~Tm 94 (103)
++-||..|+|||+..
T Consensus 45 ~ll~G~~G~GKt~la 59 (323)
T 1sxj_B 45 MIISGMPGIGKTTSV 59 (323)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECcCCCCHHHHH
Confidence 788999999999753
No 157
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=76.17 E-value=0.41 Score=35.06 Aligned_cols=19 Identities=11% Similarity=0.123 Sum_probs=14.4
Q ss_pred CCCcEEEEeecCCCCCCceEe
Q psy12526 74 QGYNACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 74 ~G~n~ti~aYGqtgSGKT~Tm 94 (103)
.+.|. +..|.+|||||++|
T Consensus 34 ~~~~~--~i~G~~G~GKs~~~ 52 (392)
T 4ag6_A 34 TNSNW--TILAKPGAGKSFTA 52 (392)
T ss_dssp CCCCE--EEECCTTSSHHHHH
T ss_pred ccCce--EEEcCCCCCHHHHH
Confidence 45554 45899999999865
No 158
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=75.59 E-value=2.5 Score=33.69 Aligned_cols=38 Identities=8% Similarity=0.082 Sum_probs=23.0
Q ss_pred CCCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEe
Q psy12526 53 NFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 53 ~~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm 94 (103)
+-..++.....+ +..+.......++-||.+|+|||...
T Consensus 181 ~iiG~~~~i~~l----~~~l~~~~~~~vLL~G~pGtGKT~la 218 (758)
T 3pxi_A 181 PVIGRSKEIQRV----IEVLSRRTKNNPVLIGEPGVGKTAIA 218 (758)
T ss_dssp CCCCCHHHHHHH----HHHHHCSSSCEEEEESCTTTTTHHHH
T ss_pred CccCchHHHHHH----HHHHhCCCCCCeEEECCCCCCHHHHH
Confidence 344555444443 33333344445778999999999754
No 159
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=75.53 E-value=1.9 Score=34.29 Aligned_cols=28 Identities=7% Similarity=0.092 Sum_probs=18.4
Q ss_pred HHHHhhCCCcEEEEeecCCCCCCceEec
Q psy12526 68 ILDNAFQGYNACIFAYGQTGEKTNYLLN 95 (103)
Q Consensus 68 lv~~~~~G~n~ti~aYGqtgSGKT~Tm~ 95 (103)
+++.+.......++-||.+|+|||+.+.
T Consensus 198 l~~~l~~~~~~~vlL~G~~GtGKT~la~ 225 (758)
T 1r6b_X 198 AIQVLCRRRKNNPLLVGESGVGKTAIAE 225 (758)
T ss_dssp HHHHHTSSSSCEEEEECCTTSSHHHHHH
T ss_pred HHHHHhccCCCCeEEEcCCCCCHHHHHH
Confidence 3444343344456779999999998643
No 160
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=75.41 E-value=1.3 Score=31.10 Aligned_cols=24 Identities=17% Similarity=0.061 Sum_probs=16.0
Q ss_pred HHhhCCCcEEEEeecCCCCCCceEe
Q psy12526 70 DNAFQGYNACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 70 ~~~~~G~n~ti~aYGqtgSGKT~Tm 94 (103)
..+++|-. .++..++||||||.+.
T Consensus 38 ~~~~~~~~-~~l~~~~TGsGKT~~~ 61 (367)
T 1hv8_A 38 PLFLNDEY-NIVAQARTGSGKTASF 61 (367)
T ss_dssp HHHHHTCS-EEEEECCSSSSHHHHH
T ss_pred HHHhCCCC-CEEEECCCCChHHHHH
Confidence 34455532 3457899999999763
No 161
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=75.33 E-value=1.6 Score=32.80 Aligned_cols=36 Identities=14% Similarity=0.143 Sum_probs=23.7
Q ss_pred CCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEe
Q psy12526 54 FASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 54 ~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm 94 (103)
...|.+....+. ..+.++- ..++-.|..|||||+++
T Consensus 27 n~~Q~~av~~~~----~~i~~~~-~~~li~G~aGTGKT~ll 62 (459)
T 3upu_A 27 TEGQKNAFNIVM----KAIKEKK-HHVTINGPAGTGATTLT 62 (459)
T ss_dssp CHHHHHHHHHHH----HHHHSSS-CEEEEECCTTSCHHHHH
T ss_pred CHHHHHHHHHHH----HHHhcCC-CEEEEEeCCCCCHHHHH
Confidence 346776665553 3333333 36778999999999865
No 162
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=75.26 E-value=0.78 Score=33.29 Aligned_cols=17 Identities=24% Similarity=0.397 Sum_probs=14.0
Q ss_pred EEEEeecCCCCCCceEe
Q psy12526 78 ACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 78 ~ti~aYGqtgSGKT~Tm 94 (103)
..|+-||.+|+|||+..
T Consensus 73 ~~ill~Gp~GtGKT~la 89 (376)
T 1um8_A 73 SNILLIGPTGSGKTLMA 89 (376)
T ss_dssp CCEEEECCTTSSHHHHH
T ss_pred CCEEEECCCCCCHHHHH
Confidence 45788999999999753
No 163
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=75.25 E-value=0.75 Score=32.21 Aligned_cols=19 Identities=16% Similarity=0.212 Sum_probs=14.8
Q ss_pred CcEEEEeecCCCCCCceEe
Q psy12526 76 YNACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 76 ~n~ti~aYGqtgSGKT~Tm 94 (103)
....|+-||++|+|||+.+
T Consensus 37 ~~~~vll~G~~GtGKT~la 55 (324)
T 1hqc_A 37 PLEHLLLFGPPGLGKTTLA 55 (324)
T ss_dssp CCCCCEEECCTTCCCHHHH
T ss_pred CCCcEEEECCCCCCHHHHH
Confidence 3456778999999999754
No 164
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=74.66 E-value=1.7 Score=36.28 Aligned_cols=23 Identities=13% Similarity=0.030 Sum_probs=17.4
Q ss_pred HHHHhhCCCcEEEEeecCCCCCCce
Q psy12526 68 ILDNAFQGYNACIFAYGQTGEKTNY 92 (103)
Q Consensus 68 lv~~~~~G~n~ti~aYGqtgSGKT~ 92 (103)
.+..+++|.| ++..++||||||.
T Consensus 64 ai~~il~g~d--vlv~apTGSGKTl 86 (1054)
T 1gku_B 64 WAKRILRKES--FAATAPTGVGKTS 86 (1054)
T ss_dssp HHHHHHTTCC--EECCCCBTSCSHH
T ss_pred HHHHHHhCCC--EEEEcCCCCCHHH
Confidence 3455678876 4578999999994
No 165
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=74.49 E-value=0.92 Score=33.18 Aligned_cols=17 Identities=18% Similarity=0.436 Sum_probs=14.3
Q ss_pred EEEEeecCCCCCCceEe
Q psy12526 78 ACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 78 ~ti~aYGqtgSGKT~Tm 94 (103)
..|+-||.+|+|||+..
T Consensus 149 ~~vLL~GppGtGKT~la 165 (389)
T 3vfd_A 149 RGLLLFGPPGNGKTMLA 165 (389)
T ss_dssp SEEEEESSTTSCHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 46888999999999753
No 166
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=74.28 E-value=1.7 Score=33.30 Aligned_cols=20 Identities=20% Similarity=0.318 Sum_probs=15.7
Q ss_pred CCcEEEEeecCCCCCCceEe
Q psy12526 75 GYNACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 75 G~n~ti~aYGqtgSGKT~Tm 94 (103)
.....|+-||++|+|||+..
T Consensus 236 ~~~~~vLL~GppGtGKT~lA 255 (489)
T 3hu3_A 236 KPPRGILLYGPPGTGKTLIA 255 (489)
T ss_dssp CCCCEEEEECSTTSSHHHHH
T ss_pred CCCCcEEEECcCCCCHHHHH
Confidence 34456888999999999753
No 167
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=74.25 E-value=2 Score=35.84 Aligned_cols=22 Identities=18% Similarity=0.206 Sum_probs=16.6
Q ss_pred HHHhhCCCcEEEEeecCCCCCCce
Q psy12526 69 LDNAFQGYNACIFAYGQTGEKTNY 92 (103)
Q Consensus 69 v~~~~~G~n~ti~aYGqtgSGKT~ 92 (103)
+..+++|.+ ++..++||||||.
T Consensus 48 I~~il~g~~--vlv~apTGsGKTl 69 (997)
T 4a4z_A 48 VYHLEQGDS--VFVAAHTSAGKTV 69 (997)
T ss_dssp HHHHHTTCE--EEEECCTTSCSHH
T ss_pred HHHHHcCCC--EEEEECCCCcHHH
Confidence 345567754 6779999999995
No 168
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=74.13 E-value=0.6 Score=36.65 Aligned_cols=18 Identities=11% Similarity=0.075 Sum_probs=14.6
Q ss_pred EEEEeecCCCCCCceEec
Q psy12526 78 ACIFAYGQTGEKTNYLLN 95 (103)
Q Consensus 78 ~ti~aYGqtgSGKT~Tm~ 95 (103)
..++..|.+|+|||+|+.
T Consensus 165 ~~~vi~G~pGTGKTt~l~ 182 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVA 182 (608)
T ss_dssp SEEEEECCTTSTHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHH
Confidence 356789999999998753
No 169
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=74.09 E-value=1.2 Score=31.60 Aligned_cols=38 Identities=21% Similarity=0.218 Sum_probs=22.8
Q ss_pred CCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEe
Q psy12526 54 FASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 54 ~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm 94 (103)
...|+.+.+.+. ..+.. ......++-||+.|+|||..+
T Consensus 18 ~vg~~~~~~~L~-~~l~~--~~~~~~~ll~G~~G~GKT~la 55 (373)
T 1jr3_A 18 VVGQEHVLTALA-NGLSL--GRIHHAYLFSGTRGVGKTSIA 55 (373)
T ss_dssp SCSCHHHHHHHH-HHHHH--TCCCSEEEEESCTTSSHHHHH
T ss_pred ccCcHHHHHHHH-HHHHh--CCCCeEEEEECCCCCCHHHHH
Confidence 345666655443 22222 122346788999999999764
No 170
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=73.99 E-value=0.62 Score=33.28 Aligned_cols=24 Identities=17% Similarity=0.429 Sum_probs=15.8
Q ss_pred HhhCCCcEEEEeecCCCCCCceEe
Q psy12526 71 NAFQGYNACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 71 ~~~~G~n~ti~aYGqtgSGKT~Tm 94 (103)
.++++++..|.--|.+|+|||..|
T Consensus 12 ~~l~~~~~~I~lvG~nG~GKSTLl 35 (301)
T 2qnr_A 12 SVKKGFEFTLMVVGESGLGKSTLI 35 (301)
T ss_dssp ------CEEEEEEEETTSSHHHHH
T ss_pred EEEcCCCEEEEEECCCCCCHHHHH
Confidence 367888999989999999999743
No 171
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=73.91 E-value=2.6 Score=33.66 Aligned_cols=37 Identities=22% Similarity=0.306 Sum_probs=24.1
Q ss_pred CHHHHHHHHHHHHHHHhhCCCc------EEEEeecCCCCCCceE
Q psy12526 56 SQEKVFDALGRDILDNAFQGYN------ACIFAYGQTGEKTNYL 93 (103)
Q Consensus 56 ~q~~v~~~~~~~lv~~~~~G~n------~ti~aYGqtgSGKT~T 93 (103)
.|...-..+.. .+.....|.. +.++-||++|+|||+.
T Consensus 495 Gq~~a~~~l~~-~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~l 537 (758)
T 3pxi_A 495 GQDEAVVAVAK-AVRRARAGLKDPKRPIGSFIFLGPTGVGKTEL 537 (758)
T ss_dssp SCHHHHHHHHH-HHHHHTTTCSCTTSCSEEEEEESCTTSSHHHH
T ss_pred ChHHHHHHHHH-HHHHHHcccCCCCCCceEEEEECCCCCCHHHH
Confidence 45555555543 3444444443 3688899999999975
No 172
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=73.39 E-value=0.92 Score=32.77 Aligned_cols=16 Identities=31% Similarity=0.472 Sum_probs=13.3
Q ss_pred EEEEeecCCCCCCceE
Q psy12526 78 ACIFAYGQTGEKTNYL 93 (103)
Q Consensus 78 ~ti~aYGqtgSGKT~T 93 (103)
..|+-||++|+|||+.
T Consensus 52 ~~vll~GppGtGKT~l 67 (363)
T 3hws_A 52 SNILLIGPTGSGKTLL 67 (363)
T ss_dssp CCEEEECCTTSSHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 4577799999999974
No 173
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=73.36 E-value=0.92 Score=32.99 Aligned_cols=16 Identities=38% Similarity=0.711 Sum_probs=13.3
Q ss_pred EEEeecCCCCCCceEe
Q psy12526 79 CIFAYGQTGEKTNYLL 94 (103)
Q Consensus 79 ti~aYGqtgSGKT~Tm 94 (103)
.|+-||+.|+|||+..
T Consensus 86 ~iLL~GppGtGKT~la 101 (355)
T 2qp9_X 86 GILLYGPPGTGKSYLA 101 (355)
T ss_dssp CEEEECSTTSCHHHHH
T ss_pred eEEEECCCCCcHHHHH
Confidence 4778999999999753
No 174
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=73.25 E-value=2.8 Score=34.05 Aligned_cols=16 Identities=25% Similarity=0.328 Sum_probs=14.3
Q ss_pred EEEEeecCCCCCCceE
Q psy12526 78 ACIFAYGQTGEKTNYL 93 (103)
Q Consensus 78 ~ti~aYGqtgSGKT~T 93 (103)
..|+-+|++|+|||+.
T Consensus 589 ~~vLl~Gp~GtGKT~l 604 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTEL 604 (854)
T ss_dssp EEEEEBSCSSSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 6889999999999975
No 175
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=73.13 E-value=2.1 Score=28.00 Aligned_cols=28 Identities=21% Similarity=0.348 Sum_probs=19.3
Q ss_pred HHHHHhhC-CC--cEEEEeecCCCCCCceEe
Q psy12526 67 DILDNAFQ-GY--NACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 67 ~lv~~~~~-G~--n~ti~aYGqtgSGKT~Tm 94 (103)
+-++.++. |+ ...+.-+|.+|+|||..+
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~ 37 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLA 37 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHH
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHH
Confidence 34566665 44 346778999999999643
No 176
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=72.88 E-value=3.4 Score=32.82 Aligned_cols=37 Identities=24% Similarity=0.347 Sum_probs=23.2
Q ss_pred CHHHHHHHHHHHHHHHhhCCCc------EEEEeecCCCCCCceE
Q psy12526 56 SQEKVFDALGRDILDNAFQGYN------ACIFAYGQTGEKTNYL 93 (103)
Q Consensus 56 ~q~~v~~~~~~~lv~~~~~G~n------~ti~aYGqtgSGKT~T 93 (103)
.|++.-+.+. ..+.....|.. ..++-+|.+|+|||+.
T Consensus 462 g~~~~~~~l~-~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~l 504 (758)
T 1r6b_X 462 GQDKAIEALT-EAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEV 504 (758)
T ss_dssp SCHHHHHHHH-HHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHH
T ss_pred CHHHHHHHHH-HHHHHHhcccCCCCCCceEEEEECCCCCcHHHH
Confidence 4444444443 33444455543 5788899999999975
No 177
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=72.82 E-value=0.75 Score=30.79 Aligned_cols=15 Identities=20% Similarity=0.335 Sum_probs=12.0
Q ss_pred EEeecCCCCCCceEe
Q psy12526 80 IFAYGQTGEKTNYLL 94 (103)
Q Consensus 80 i~aYGqtgSGKT~Tm 94 (103)
+.-.|++|||||..+
T Consensus 33 ~~l~GpnGsGKSTLl 47 (251)
T 2ehv_A 33 VLLTGGTGTGKTTFA 47 (251)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEEeCCCCCHHHHH
Confidence 444899999999765
No 178
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=72.47 E-value=0.61 Score=32.28 Aligned_cols=20 Identities=15% Similarity=-0.120 Sum_probs=15.8
Q ss_pred cEEEEeecCCCCCCceEecc
Q psy12526 77 NACIFAYGQTGEKTNYLLNG 96 (103)
Q Consensus 77 n~ti~aYGqtgSGKT~Tm~G 96 (103)
...++-+|..|+|||..+++
T Consensus 12 G~i~litG~mGsGKTT~ll~ 31 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIR 31 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHH
T ss_pred cEEEEEECCCCCcHHHHHHH
Confidence 34677899999999987654
No 179
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=72.40 E-value=1.8 Score=35.24 Aligned_cols=37 Identities=8% Similarity=0.135 Sum_probs=24.0
Q ss_pred CCCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceE
Q psy12526 53 NFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYL 93 (103)
Q Consensus 53 ~~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~T 93 (103)
...-|.+++..+. ..+..+....++..|.||||||..
T Consensus 369 lt~~Q~~ai~~I~----~~l~~~~~~~~Ll~a~TGSGKTlv 405 (780)
T 1gm5_A 369 LTNAQKRAHQEIR----NDMISEKPMNRLLQGDVGSGKTVV 405 (780)
T ss_dssp CCHHHHHHHHHHH----HHHHSSSCCCCEEECCSSSSHHHH
T ss_pred CCHHHHHHHHHHH----hhccccCCCcEEEEcCCCCCHHHH
Confidence 3456766665544 344455544567799999999964
No 180
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=72.22 E-value=2.8 Score=30.49 Aligned_cols=17 Identities=18% Similarity=0.206 Sum_probs=13.3
Q ss_pred EEEEeecCCCCCCceEe
Q psy12526 78 ACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 78 ~ti~aYGqtgSGKT~Tm 94 (103)
..+.--|.+|+|||.++
T Consensus 130 ~vi~lvG~nGaGKTTll 146 (328)
T 3e70_C 130 YVIMFVGFNGSGKTTTI 146 (328)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45555699999999875
No 181
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=72.18 E-value=2.2 Score=34.23 Aligned_cols=24 Identities=25% Similarity=0.461 Sum_probs=17.9
Q ss_pred HHHHhhCCCcEEEEeecCCCCCCceE
Q psy12526 68 ILDNAFQGYNACIFAYGQTGEKTNYL 93 (103)
Q Consensus 68 lv~~~~~G~n~ti~aYGqtgSGKT~T 93 (103)
.+..+++|.|+ +...+||||||.+
T Consensus 256 ~i~~~l~~~~~--ll~~~TGsGKTl~ 279 (797)
T 4a2q_A 256 LAQPAINGKNA--LICAPTGSGKTFV 279 (797)
T ss_dssp HHHHHHTTCCE--EEECCTTSCHHHH
T ss_pred HHHHHHhCCCE--EEEeCCCChHHHH
Confidence 34556788774 5688999999965
No 182
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=71.71 E-value=1.4 Score=33.04 Aligned_cols=15 Identities=7% Similarity=-0.106 Sum_probs=12.2
Q ss_pred EEeecCCCCCCceEe
Q psy12526 80 IFAYGQTGEKTNYLL 94 (103)
Q Consensus 80 i~aYGqtgSGKT~Tm 94 (103)
++..+.||||||.+.
T Consensus 131 ~ll~~~tGsGKT~~~ 145 (510)
T 2oca_A 131 RILNLPTSAGRSLIQ 145 (510)
T ss_dssp EEEECCSTTTHHHHH
T ss_pred cEEEeCCCCCHHHHH
Confidence 456899999999764
No 183
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=71.50 E-value=0.83 Score=32.80 Aligned_cols=16 Identities=25% Similarity=0.306 Sum_probs=12.9
Q ss_pred EEEeecCCCCCCceEe
Q psy12526 79 CIFAYGQTGEKTNYLL 94 (103)
Q Consensus 79 ti~aYGqtgSGKT~Tm 94 (103)
.+.-.|.+|||||.++
T Consensus 102 vi~lvG~nGsGKTTll 117 (302)
T 3b9q_A 102 VIMIVGVNGGGKTTSL 117 (302)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 4556699999999875
No 184
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=71.20 E-value=1.1 Score=34.31 Aligned_cols=23 Identities=17% Similarity=0.317 Sum_probs=16.3
Q ss_pred HHHhhCCCcEEEEeecCCCCCCceE
Q psy12526 69 LDNAFQGYNACIFAYGQTGEKTNYL 93 (103)
Q Consensus 69 v~~~~~G~n~ti~aYGqtgSGKT~T 93 (103)
+..+++|.++ +...+||+|||..
T Consensus 34 i~~il~g~d~--lv~apTGsGKTl~ 56 (523)
T 1oyw_A 34 IDTVLSGRDC--LVVMPTGGGKSLC 56 (523)
T ss_dssp HHHHHTTCCE--EEECSCHHHHHHH
T ss_pred HHHHHcCCCE--EEECCCCcHHHHH
Confidence 3445677764 4567999999963
No 185
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=71.19 E-value=1.9 Score=32.87 Aligned_cols=17 Identities=18% Similarity=0.255 Sum_probs=14.3
Q ss_pred EEEEeecCCCCCCceEe
Q psy12526 78 ACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 78 ~ti~aYGqtgSGKT~Tm 94 (103)
-.++-||+.|+|||+++
T Consensus 78 ~~lLL~GppGtGKTtla 94 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAA 94 (516)
T ss_dssp SEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 46788999999999864
No 186
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=70.97 E-value=0.89 Score=29.91 Aligned_cols=26 Identities=23% Similarity=0.327 Sum_probs=16.6
Q ss_pred HHHhhC-CC--cEEEEeecCCCCCCceEe
Q psy12526 69 LDNAFQ-GY--NACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 69 v~~~~~-G~--n~ti~aYGqtgSGKT~Tm 94 (103)
++.++. |+ ...+.-+|.+|+|||..+
T Consensus 12 Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~ 40 (235)
T 2w0m_A 12 FDKLIQGGIPQGFFIALTGEPGTGKTIFS 40 (235)
T ss_dssp HHGGGTTSEETTCEEEEECSTTSSHHHHH
T ss_pred HHHHhcCCCcCCCEEEEEcCCCCCHHHHH
Confidence 455554 32 234555899999999754
No 187
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=69.97 E-value=2.2 Score=28.34 Aligned_cols=17 Identities=12% Similarity=0.249 Sum_probs=13.5
Q ss_pred EEEEeecCCCCCCceEe
Q psy12526 78 ACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 78 ~ti~aYGqtgSGKT~Tm 94 (103)
..+.-+|.+|+|||..+
T Consensus 24 ~~~~i~G~~GsGKTtl~ 40 (247)
T 2dr3_A 24 NVVLLSGGPGTGKTIFS 40 (247)
T ss_dssp CEEEEEECTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 35667999999999763
No 188
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=69.86 E-value=0.9 Score=32.49 Aligned_cols=17 Identities=29% Similarity=0.460 Sum_probs=13.2
Q ss_pred EEEeecCCCCCCceEec
Q psy12526 79 CIFAYGQTGEKTNYLLN 95 (103)
Q Consensus 79 ti~aYGqtgSGKT~Tm~ 95 (103)
.|.-.|.+|+|||.|+.
T Consensus 107 vi~lvG~~GsGKTTl~~ 123 (296)
T 2px0_A 107 YIVLFGSTGAGKTTTLA 123 (296)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 45556999999998753
No 189
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=69.76 E-value=2.3 Score=33.13 Aligned_cols=16 Identities=19% Similarity=0.285 Sum_probs=12.9
Q ss_pred EEEeecCCCCCCceEe
Q psy12526 79 CIFAYGQTGEKTNYLL 94 (103)
Q Consensus 79 ti~aYGqtgSGKT~Tm 94 (103)
.|.-.|.+|||||.++
T Consensus 295 VI~LVGpNGSGKTTLl 310 (503)
T 2yhs_A 295 VILMVGVNGVGKTTTI 310 (503)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCcccHHHHH
Confidence 4556699999999865
No 190
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=69.68 E-value=2.3 Score=33.75 Aligned_cols=38 Identities=16% Similarity=0.182 Sum_probs=26.3
Q ss_pred CCCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEec
Q psy12526 53 NFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLN 95 (103)
Q Consensus 53 ~~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~ 95 (103)
+...|..-+.. +++.+-+|.... .-.|.||||||++|.
T Consensus 9 ~~~~q~~ai~~----l~~~~~~~~~~~-~l~g~tgs~kt~~~a 46 (664)
T 1c4o_A 9 PKGDQPKAIAG----LVEALRDGERFV-TLLGATGTGKTVTMA 46 (664)
T ss_dssp CCTTHHHHHHH----HHHHHHTTCSEE-EEEECTTSCHHHHHH
T ss_pred CCCCChHHHHH----HHHHHhcCCCcE-EEEcCCCcHHHHHHH
Confidence 67788766554 455556665332 346999999999985
No 191
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=69.58 E-value=1.3 Score=28.40 Aligned_cols=15 Identities=27% Similarity=0.315 Sum_probs=12.2
Q ss_pred EEEeecCCCCCCceE
Q psy12526 79 CIFAYGQTGEKTNYL 93 (103)
Q Consensus 79 ti~aYGqtgSGKT~T 93 (103)
.|+-.|..|||||+.
T Consensus 13 ~i~i~G~~GsGKst~ 27 (180)
T 3iij_A 13 NILLTGTPGVGKTTL 27 (180)
T ss_dssp CEEEECSTTSSHHHH
T ss_pred eEEEEeCCCCCHHHH
Confidence 366799999999863
No 192
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=69.13 E-value=1.3 Score=35.49 Aligned_cols=19 Identities=37% Similarity=0.485 Sum_probs=14.6
Q ss_pred hhCCCcEEEEeecCCCCCCce
Q psy12526 72 AFQGYNACIFAYGQTGEKTNY 92 (103)
Q Consensus 72 ~~~G~n~ti~aYGqtgSGKT~ 92 (103)
.++|- .|+..|+||||||+
T Consensus 152 ~l~rk--~vlv~apTGSGKT~ 170 (677)
T 3rc3_A 152 AMQRK--IIFHSGPTNSGKTY 170 (677)
T ss_dssp TSCCE--EEEEECCTTSSHHH
T ss_pred hcCCC--EEEEEcCCCCCHHH
Confidence 34553 46789999999997
No 193
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=69.03 E-value=2.2 Score=33.53 Aligned_cols=19 Identities=16% Similarity=0.399 Sum_probs=14.4
Q ss_pred hCCCcEEEEeecCCCCCCceE
Q psy12526 73 FQGYNACIFAYGQTGEKTNYL 93 (103)
Q Consensus 73 ~~G~n~ti~aYGqtgSGKT~T 93 (103)
.+|-| ++..++||||||..
T Consensus 44 ~~~~~--~lv~apTGsGKT~~ 62 (715)
T 2va8_A 44 LEGNR--LLLTSPTGSGKTLI 62 (715)
T ss_dssp TTTCC--EEEECCTTSCHHHH
T ss_pred cCCCc--EEEEcCCCCcHHHH
Confidence 45555 55689999999965
No 194
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=68.95 E-value=1.3 Score=34.86 Aligned_cols=30 Identities=23% Similarity=0.378 Sum_probs=20.4
Q ss_pred CCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceE
Q psy12526 54 FASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYL 93 (103)
Q Consensus 54 ~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~T 93 (103)
..-|.+++.. +++|.| ++..++||||||..
T Consensus 27 ~~~Q~~~i~~--------i~~~~~--~lv~apTGsGKT~~ 56 (702)
T 2p6r_A 27 FPPQAEAVEK--------VFSGKN--LLLAMPTAAGKTLL 56 (702)
T ss_dssp CCCCHHHHHH--------HTTCSC--EEEECSSHHHHHHH
T ss_pred CHHHHHHHHH--------HhCCCc--EEEEcCCccHHHHH
Confidence 3466666554 345666 45689999999964
No 195
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=68.74 E-value=1.8 Score=32.45 Aligned_cols=15 Identities=7% Similarity=-0.133 Sum_probs=12.2
Q ss_pred EEEeecCCCCCCceE
Q psy12526 79 CIFAYGQTGEKTNYL 93 (103)
Q Consensus 79 ti~aYGqtgSGKT~T 93 (103)
.++..++||||||..
T Consensus 23 ~vlv~a~TGsGKT~~ 37 (459)
T 2z83_A 23 MTVLDLHPGSGKTRK 37 (459)
T ss_dssp EEEECCCTTSCTTTT
T ss_pred cEEEECCCCCCHHHH
Confidence 355789999999975
No 196
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=68.59 E-value=2.1 Score=27.21 Aligned_cols=13 Identities=31% Similarity=0.491 Sum_probs=10.7
Q ss_pred EeecCCCCCCceE
Q psy12526 81 FAYGQTGEKTNYL 93 (103)
Q Consensus 81 ~aYGqtgSGKT~T 93 (103)
.-+|++|||||.-
T Consensus 27 ~I~G~NGsGKSti 39 (149)
T 1f2t_A 27 LIIGQNGSGKSSL 39 (149)
T ss_dssp EEECCTTSSHHHH
T ss_pred EEECCCCCCHHHH
Confidence 4689999999863
No 197
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=68.55 E-value=1.5 Score=32.90 Aligned_cols=17 Identities=29% Similarity=0.604 Sum_probs=14.1
Q ss_pred EEEEeecCCCCCCceEe
Q psy12526 78 ACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 78 ~ti~aYGqtgSGKT~Tm 94 (103)
-.|+-||+.|+|||+..
T Consensus 168 ~~vLL~GppGtGKT~lA 184 (444)
T 2zan_A 168 RGILLFGPPGTGKSYLA 184 (444)
T ss_dssp SEEEEECSTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 45788999999999754
No 198
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=68.53 E-value=1.1 Score=32.17 Aligned_cols=16 Identities=13% Similarity=0.283 Sum_probs=12.5
Q ss_pred EEEeecCCCCCCceEe
Q psy12526 79 CIFAYGQTGEKTNYLL 94 (103)
Q Consensus 79 ti~aYGqtgSGKT~Tm 94 (103)
.|.-.|.+|||||.++
T Consensus 104 vi~lvG~nGsGKTTll 119 (304)
T 1rj9_A 104 VVLVVGVNGVGKTTTI 119 (304)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 4445699999999865
No 199
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=68.29 E-value=1.1 Score=29.72 Aligned_cols=22 Identities=14% Similarity=0.084 Sum_probs=13.0
Q ss_pred HhhCCCcEEEEeecCCCCCCceEe
Q psy12526 71 NAFQGYNACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 71 ~~~~G~n~ti~aYGqtgSGKT~Tm 94 (103)
.+-.|--.+ -.|++|||||..+
T Consensus 16 ~i~~Gei~~--l~GpnGsGKSTLl 37 (207)
T 1znw_A 16 PAAVGRVVV--LSGPSAVGKSTVV 37 (207)
T ss_dssp ---CCCEEE--EECSTTSSHHHHH
T ss_pred CCCCCCEEE--EECCCCCCHHHHH
Confidence 344554333 3699999999753
No 200
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=68.25 E-value=2.9 Score=34.37 Aligned_cols=24 Identities=25% Similarity=0.393 Sum_probs=17.9
Q ss_pred HHHhhCCCcEEEEeecCCCCCCceEe
Q psy12526 69 LDNAFQGYNACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 69 v~~~~~G~n~ti~aYGqtgSGKT~Tm 94 (103)
+..+++|.|+ +..++||||||.+.
T Consensus 257 i~~il~g~~~--ll~a~TGsGKTl~~ 280 (936)
T 4a2w_A 257 AQPAINGKNA--LICAPTGSGKTFVS 280 (936)
T ss_dssp HHHHHTTCCE--EEECCTTSCHHHHH
T ss_pred HHHHHcCCCE--EEEeCCCchHHHHH
Confidence 4555778774 45889999999753
No 201
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=68.17 E-value=1.3 Score=35.99 Aligned_cols=38 Identities=5% Similarity=0.150 Sum_probs=22.4
Q ss_pred CCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEec
Q psy12526 54 FASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLN 95 (103)
Q Consensus 54 ~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~ 95 (103)
...+++.... ++..+..+-...++-||..|+|||+.+.
T Consensus 172 viGr~~~i~~----l~~~l~~~~~~~vlL~G~pG~GKT~la~ 209 (854)
T 1qvr_A 172 VIGRDEEIRR----VIQILLRRTKNNPVLIGEPGVGKTAIVE 209 (854)
T ss_dssp CCSCHHHHHH----HHHHHHCSSCCCCEEEECTTSCHHHHHH
T ss_pred cCCcHHHHHH----HHHHHhcCCCCceEEEcCCCCCHHHHHH
Confidence 3445444333 3343344433345679999999998654
No 202
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=67.68 E-value=2.8 Score=35.30 Aligned_cols=23 Identities=17% Similarity=0.108 Sum_probs=17.9
Q ss_pred HHHHhhCCCcEEEEeecCCCCCCce
Q psy12526 68 ILDNAFQGYNACIFAYGQTGEKTNY 92 (103)
Q Consensus 68 lv~~~~~G~n~ti~aYGqtgSGKT~ 92 (103)
.+..+++|.| +++.++||||||.
T Consensus 86 ai~~il~g~d--vlv~ApTGSGKTl 108 (1104)
T 4ddu_A 86 WAKRIVQGKS--FTMVAPTGVGKTT 108 (1104)
T ss_dssp HHHHHTTTCC--EEECCSTTCCHHH
T ss_pred HHHHHHcCCC--EEEEeCCCCcHHH
Confidence 4556678876 4678999999997
No 203
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=67.55 E-value=1.8 Score=27.74 Aligned_cols=14 Identities=14% Similarity=0.245 Sum_probs=11.3
Q ss_pred EEeecCCCCCCceE
Q psy12526 80 IFAYGQTGEKTNYL 93 (103)
Q Consensus 80 i~aYGqtgSGKT~T 93 (103)
..-+|++|||||..
T Consensus 29 ~~i~G~NGsGKStl 42 (182)
T 3kta_A 29 TAIVGANGSGKSNI 42 (182)
T ss_dssp EEEEECTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 34689999999864
No 204
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=67.47 E-value=4.8 Score=34.02 Aligned_cols=26 Identities=15% Similarity=0.171 Sum_probs=18.6
Q ss_pred HHHHhhCCCcEEEEeecCCCCCCceE
Q psy12526 68 ILDNAFQGYNACIFAYGQTGEKTNYL 93 (103)
Q Consensus 68 lv~~~~~G~n~ti~aYGqtgSGKT~T 93 (103)
++..+-.|...-++..|.||+|||..
T Consensus 615 il~~~~~g~p~d~ll~~~TGsGKT~v 640 (1151)
T 2eyq_A 615 VLSDMCQPLAMDRLVCGDVGFGKTEV 640 (1151)
T ss_dssp HHHHHHSSSCCEEEEECCCCTTTHHH
T ss_pred HHHHHhcCCcCcEEEECCCCCCHHHH
Confidence 34444557655677899999999964
No 205
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=67.46 E-value=2.6 Score=33.41 Aligned_cols=38 Identities=16% Similarity=0.271 Sum_probs=26.6
Q ss_pred CCCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEec
Q psy12526 53 NFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLN 95 (103)
Q Consensus 53 ~~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~ 95 (103)
|...|..-+.. +++.+-+|... ..-.|.||||||++|.
T Consensus 13 p~~~Q~~~i~~----l~~~~~~~~~~-~~l~g~~gs~k~~~~a 50 (661)
T 2d7d_A 13 PQGDQPKAIEK----LVKGIQEGKKH-QTLLGATGTGKTFTVS 50 (661)
T ss_dssp CCTTHHHHHHH----HHHHHHTTCSE-EEEEECTTSCHHHHHH
T ss_pred CCCCCHHHHHH----HHHHHhcCCCc-EEEECcCCcHHHHHHH
Confidence 77888766655 45555666532 2346999999999985
No 206
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=67.08 E-value=1.9 Score=27.77 Aligned_cols=16 Identities=13% Similarity=0.312 Sum_probs=12.8
Q ss_pred EEEeecCCCCCCceEe
Q psy12526 79 CIFAYGQTGEKTNYLL 94 (103)
Q Consensus 79 ti~aYGqtgSGKT~Tm 94 (103)
.|.-.|.+|||||..+
T Consensus 11 ~i~l~G~~GsGKSTl~ 26 (191)
T 1zp6_A 11 ILLLSGHPGSGKSTIA 26 (191)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4566899999999854
No 207
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=67.08 E-value=1.1 Score=35.47 Aligned_cols=16 Identities=19% Similarity=0.283 Sum_probs=13.2
Q ss_pred EEEeecCCCCCCceEe
Q psy12526 79 CIFAYGQTGEKTNYLL 94 (103)
Q Consensus 79 ti~aYGqtgSGKT~Tm 94 (103)
-++..|.||||||..+
T Consensus 216 HlLIaG~TGSGKS~~L 231 (574)
T 2iut_A 216 HLLVAGTTGSGKSVGV 231 (574)
T ss_dssp CEEEECCTTSSHHHHH
T ss_pred eeEEECCCCCCHHHHH
Confidence 4578999999999754
No 208
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=66.97 E-value=2.6 Score=35.55 Aligned_cols=23 Identities=9% Similarity=0.156 Sum_probs=17.3
Q ss_pred HHHhhCCCcEEEEeecCCCCCCceE
Q psy12526 69 LDNAFQGYNACIFAYGQTGEKTNYL 93 (103)
Q Consensus 69 v~~~~~G~n~ti~aYGqtgSGKT~T 93 (103)
+..+++|.+ ++..++||||||..
T Consensus 193 I~~i~~g~d--vLV~ApTGSGKTlv 215 (1108)
T 3l9o_A 193 ISCIDRGES--VLVSAHTSAGKTVV 215 (1108)
T ss_dssp HHHHTTTCC--EEEECCSSSHHHHH
T ss_pred HHHHHcCCC--EEEECCCCCChHHH
Confidence 445577766 46799999999953
No 209
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=66.65 E-value=1.9 Score=33.83 Aligned_cols=17 Identities=12% Similarity=0.079 Sum_probs=13.9
Q ss_pred EEEeecCCCCCCceEec
Q psy12526 79 CIFAYGQTGEKTNYLLN 95 (103)
Q Consensus 79 ti~aYGqtgSGKT~Tm~ 95 (103)
.++-.|..|+|||+|+.
T Consensus 197 ~~li~GppGTGKT~~~~ 213 (624)
T 2gk6_A 197 LSLIQGPPGTGKTVTSA 213 (624)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred CeEEECCCCCCHHHHHH
Confidence 45678999999999864
No 210
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=66.64 E-value=1.6 Score=33.25 Aligned_cols=16 Identities=25% Similarity=0.468 Sum_probs=13.3
Q ss_pred EEEEeecCCCCCCceE
Q psy12526 78 ACIFAYGQTGEKTNYL 93 (103)
Q Consensus 78 ~ti~aYGqtgSGKT~T 93 (103)
-.|+-||+.|+|||..
T Consensus 216 rGvLLyGPPGTGKTll 231 (434)
T 4b4t_M 216 KGALMYGPPGTGKTLL 231 (434)
T ss_dssp CEEEEESCTTSSHHHH
T ss_pred CeeEEECcCCCCHHHH
Confidence 4577899999999864
No 211
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=66.52 E-value=1.2 Score=32.91 Aligned_cols=17 Identities=29% Similarity=0.335 Sum_probs=13.4
Q ss_pred EEEEeecCCCCCCceEe
Q psy12526 78 ACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 78 ~ti~aYGqtgSGKT~Tm 94 (103)
..|.--|.+|||||.++
T Consensus 158 ~vi~lvG~nGsGKTTll 174 (359)
T 2og2_A 158 AVIMIVGVNGGGKTTSL 174 (359)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred eEEEEEcCCCChHHHHH
Confidence 35556799999999875
No 212
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=66.12 E-value=1.2 Score=34.50 Aligned_cols=19 Identities=11% Similarity=0.225 Sum_probs=15.3
Q ss_pred cEEEEeecCCCCCCceEec
Q psy12526 77 NACIFAYGQTGEKTNYLLN 95 (103)
Q Consensus 77 n~ti~aYGqtgSGKT~Tm~ 95 (103)
+..++..|..|||||+|+.
T Consensus 22 ~~~~lV~a~aGsGKT~~l~ 40 (647)
T 3lfu_A 22 RSNLLVLAGAGSGKTRVLV 40 (647)
T ss_dssp SSCEEEEECTTSCHHHHHH
T ss_pred CCCEEEEECCCCCHHHHHH
Confidence 4456778999999999874
No 213
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=66.07 E-value=1.2 Score=34.46 Aligned_cols=16 Identities=19% Similarity=0.254 Sum_probs=13.6
Q ss_pred EEEeecCCCCCCceEe
Q psy12526 79 CIFAYGQTGEKTNYLL 94 (103)
Q Consensus 79 ti~aYGqtgSGKT~Tm 94 (103)
.|+-||++|+|||+.+
T Consensus 66 GvLL~GppGtGKTtLa 81 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLA 81 (499)
T ss_dssp EEEEECSSSSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 3788999999999754
No 214
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=65.92 E-value=1.7 Score=29.13 Aligned_cols=14 Identities=7% Similarity=0.014 Sum_probs=7.2
Q ss_pred EeecCCCCCCceEe
Q psy12526 81 FAYGQTGEKTNYLL 94 (103)
Q Consensus 81 ~aYGqtgSGKT~Tm 94 (103)
.--|.+|||||..+
T Consensus 31 ~l~Gp~GsGKSTl~ 44 (231)
T 3lnc_A 31 VLSSPSGCGKTTVA 44 (231)
T ss_dssp EEECSCC----CHH
T ss_pred EEECCCCCCHHHHH
Confidence 34699999999764
No 215
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=65.21 E-value=1.7 Score=34.13 Aligned_cols=15 Identities=13% Similarity=0.155 Sum_probs=12.9
Q ss_pred EeecCCCCCCceEec
Q psy12526 81 FAYGQTGEKTNYLLN 95 (103)
Q Consensus 81 ~aYGqtgSGKT~Tm~ 95 (103)
+-.|+-|+|||+|+.
T Consensus 209 lI~GPPGTGKT~ti~ 223 (646)
T 4b3f_X 209 IIHGPPGTGKTTTVV 223 (646)
T ss_dssp EEECCTTSCHHHHHH
T ss_pred EEECCCCCCHHHHHH
Confidence 468999999999864
No 216
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=65.00 E-value=1.7 Score=34.40 Aligned_cols=19 Identities=16% Similarity=0.200 Sum_probs=14.4
Q ss_pred hCCCcEEEEeecCCCCCCceE
Q psy12526 73 FQGYNACIFAYGQTGEKTNYL 93 (103)
Q Consensus 73 ~~G~n~ti~aYGqtgSGKT~T 93 (103)
.+|.| ++..++||||||..
T Consensus 37 ~~~~~--~lv~apTGsGKT~~ 55 (720)
T 2zj8_A 37 LEGKN--ALISIPTASGKTLI 55 (720)
T ss_dssp GGTCE--EEEECCGGGCHHHH
T ss_pred cCCCc--EEEEcCCccHHHHH
Confidence 45554 66799999999964
No 217
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=64.93 E-value=7.8 Score=27.45 Aligned_cols=37 Identities=16% Similarity=0.168 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHhh--CCCcEEEEeecCCCCCCceEe
Q psy12526 58 EKVFDALGRDILDNAF--QGYNACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 58 ~~v~~~~~~~lv~~~~--~G~n~ti~aYGqtgSGKT~Tm 94 (103)
+.+++.++..+..... .+-...|.--|.+|||||..+
T Consensus 10 ~~~~~~l~~~i~~~~~~~~~~~~ii~I~G~sGsGKSTla 48 (290)
T 1odf_A 10 DYTIEFLDKYIPEWFETGNKCPLFIFFSGPQGSGKSFTS 48 (290)
T ss_dssp HHHHHHHHHHHHHHHTTTCCSCEEEEEECCTTSSHHHHH
T ss_pred HHHHHHHHHHHHHhhhccCCCCeEEEEECCCCCCHHHHH
Confidence 4455555544444322 233445666799999999753
No 218
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=64.84 E-value=1.8 Score=32.97 Aligned_cols=16 Identities=25% Similarity=0.538 Sum_probs=13.5
Q ss_pred EEEEeecCCCCCCceE
Q psy12526 78 ACIFAYGQTGEKTNYL 93 (103)
Q Consensus 78 ~ti~aYGqtgSGKT~T 93 (103)
-.|+-||+.|+|||..
T Consensus 216 rGvLL~GPPGtGKTll 231 (437)
T 4b4t_L 216 KGVLLYGPPGTGKTLL 231 (437)
T ss_dssp CEEEEESCTTSSHHHH
T ss_pred CeEEEECCCCCcHHHH
Confidence 4578899999999864
No 219
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=64.84 E-value=3.3 Score=32.22 Aligned_cols=26 Identities=23% Similarity=0.180 Sum_probs=17.9
Q ss_pred HHHHHhhCCCcEEEEeecCCCCCCceEe
Q psy12526 67 DILDNAFQGYNACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 67 ~lv~~~~~G~n~ti~aYGqtgSGKT~Tm 94 (103)
.+-..+..|- .++-+|++|+|||..+
T Consensus 52 ~l~~~i~~g~--~vll~Gp~GtGKTtla 77 (604)
T 3k1j_A 52 VIKTAANQKR--HVLLIGEPGTGKSMLG 77 (604)
T ss_dssp HHHHHHHTTC--CEEEECCTTSSHHHHH
T ss_pred hccccccCCC--EEEEEeCCCCCHHHHH
Confidence 3344455665 4556999999999754
No 220
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=64.58 E-value=3.8 Score=28.48 Aligned_cols=17 Identities=18% Similarity=0.131 Sum_probs=14.1
Q ss_pred EEEEeecCCCCCCceEe
Q psy12526 78 ACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 78 ~ti~aYGqtgSGKT~Tm 94 (103)
..++-+|+.|+|||..+
T Consensus 32 ~~v~i~G~~G~GKT~Ll 48 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLL 48 (350)
T ss_dssp SEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCcCCHHHHH
Confidence 46778999999999754
No 221
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=64.55 E-value=2.8 Score=35.01 Aligned_cols=20 Identities=10% Similarity=0.154 Sum_probs=15.2
Q ss_pred hhCCCcEEEEeecCCCCCCceE
Q psy12526 72 AFQGYNACIFAYGQTGEKTNYL 93 (103)
Q Consensus 72 ~~~G~n~ti~aYGqtgSGKT~T 93 (103)
+++|.+ ++..++||||||..
T Consensus 98 l~~g~~--vLV~apTGSGKTlv 117 (1010)
T 2xgj_A 98 IDRGES--VLVSAHTSAGKTVV 117 (1010)
T ss_dssp HHHTCE--EEEECCTTSCHHHH
T ss_pred HHcCCC--EEEECCCCCChHHH
Confidence 455655 66789999999964
No 222
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=64.54 E-value=1.8 Score=32.80 Aligned_cols=16 Identities=25% Similarity=0.530 Sum_probs=13.3
Q ss_pred EEEEeecCCCCCCceE
Q psy12526 78 ACIFAYGQTGEKTNYL 93 (103)
Q Consensus 78 ~ti~aYGqtgSGKT~T 93 (103)
-.|+-||+.|+|||..
T Consensus 207 rGiLL~GPPGtGKT~l 222 (428)
T 4b4t_K 207 RGVLLYGPPGTGKTML 222 (428)
T ss_dssp CEEEEESCTTTTHHHH
T ss_pred ceEEEECCCCCCHHHH
Confidence 3488999999999864
No 223
>4etp_B Spindle POLE BODY-associated protein VIK1; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=64.41 E-value=25 Score=25.91 Aligned_cols=47 Identities=15% Similarity=0.147 Sum_probs=34.3
Q ss_pred CCceEEeceEEecCCCCCCCCCCHHHHHHHHHHHHHHHhh-CCCcEEEEeecCC
Q psy12526 34 PPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAF-QGYNACIFAYGQT 86 (103)
Q Consensus 34 ~~~~F~fd~vf~s~~~~~~~~~~q~~v~~~~~~~lv~~~~-~G~n~ti~aYGqt 86 (103)
..+.|.|++|+-+. -...+..+++++ +..++..+ .+.|+.|++-|+.
T Consensus 90 ~~~~y~FnRiIp~~-----~~~e~~~l~qE~-q~y~DmcL~~~~NfslIsis~~ 137 (333)
T 4etp_B 90 SEHVYKFNRVIPHL-----KVSEDCFFTQEY-SVYHDMALNQKKNFNLISLSTT 137 (333)
T ss_dssp CCCEEECSEEEETT-----TCCHHHHHHHTT-HHHHHHHHHTTCCEEEEEEESS
T ss_pred CcceEEEeeeechh-----hcchHHHHHHHH-HHHHHHHHccCCCeeEEEecCC
Confidence 46899999999521 122455555554 68888877 8999999998865
No 224
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=63.94 E-value=2.6 Score=29.37 Aligned_cols=17 Identities=6% Similarity=0.159 Sum_probs=14.3
Q ss_pred EEEEeecCCCCCCceEe
Q psy12526 78 ACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 78 ~ti~aYGqtgSGKT~Tm 94 (103)
..++-+|..|+|||..+
T Consensus 31 ~~v~i~G~~G~GKT~L~ 47 (357)
T 2fna_A 31 PITLVLGLRRTGKSSII 47 (357)
T ss_dssp SEEEEEESTTSSHHHHH
T ss_pred CcEEEECCCCCCHHHHH
Confidence 47888999999999754
No 225
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=63.83 E-value=1.5 Score=31.60 Aligned_cols=17 Identities=18% Similarity=0.167 Sum_probs=13.7
Q ss_pred EEEEeecCCCCCCceEe
Q psy12526 78 ACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 78 ~ti~aYGqtgSGKT~Tm 94 (103)
..|.-.|++|+|||.|+
T Consensus 105 ~vi~ivG~~GsGKTTl~ 121 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSC 121 (306)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEEcCCCChHHHHH
Confidence 45667799999999875
No 226
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=63.65 E-value=4 Score=25.55 Aligned_cols=27 Identities=15% Similarity=0.309 Sum_probs=18.8
Q ss_pred HHHHHhhC-CCcEEEEeecCCCCCCceE
Q psy12526 67 DILDNAFQ-GYNACIFAYGQTGEKTNYL 93 (103)
Q Consensus 67 ~lv~~~~~-G~n~ti~aYGqtgSGKT~T 93 (103)
.++..++. -....|.-.|..|+|||..
T Consensus 7 ~~~~~~~~~~~~~~i~v~G~~~~GKssl 34 (183)
T 1moz_A 7 SMFDKLWGSNKELRILILGLDGAGKTTI 34 (183)
T ss_dssp HHHGGGTTCSSCEEEEEEEETTSSHHHH
T ss_pred HHHHHhcCCCCccEEEEECCCCCCHHHH
Confidence 34444554 4556778899999999864
No 227
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=63.40 E-value=3.3 Score=33.18 Aligned_cols=15 Identities=13% Similarity=0.029 Sum_probs=12.6
Q ss_pred EEEeecCCCCCCceE
Q psy12526 79 CIFAYGQTGEKTNYL 93 (103)
Q Consensus 79 ti~aYGqtgSGKT~T 93 (103)
.++..++||||||+.
T Consensus 234 ~vlv~ApTGSGKT~a 248 (666)
T 3o8b_A 234 VAHLHAPTGSGKSTK 248 (666)
T ss_dssp EEEEECCTTSCTTTH
T ss_pred eEEEEeCCchhHHHH
Confidence 467899999999964
No 228
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=62.53 E-value=1.5 Score=34.11 Aligned_cols=15 Identities=20% Similarity=0.341 Sum_probs=12.3
Q ss_pred EEeecCCCCCCceEe
Q psy12526 80 IFAYGQTGEKTNYLL 94 (103)
Q Consensus 80 i~aYGqtgSGKT~Tm 94 (103)
++..|.||||||..+
T Consensus 170 lLIaG~TGSGKSt~L 184 (512)
T 2ius_A 170 LLVAGTTGSGASVGV 184 (512)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 567999999999743
No 229
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=62.38 E-value=5.6 Score=28.71 Aligned_cols=28 Identities=21% Similarity=0.218 Sum_probs=20.7
Q ss_pred HHHHHhhC-CC--cEEEEeecCCCCCCceEe
Q psy12526 67 DILDNAFQ-GY--NACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 67 ~lv~~~~~-G~--n~ti~aYGqtgSGKT~Tm 94 (103)
+-++.++. |+ ...+.-||..|||||..+
T Consensus 109 ~~LD~~LgGGl~~G~i~~I~G~~GsGKTtla 139 (343)
T 1v5w_A 109 QEFDKLLGGGIESMAITEAFGEFRTGKTQLS 139 (343)
T ss_dssp HHHHHHTTSSBCSSEEEEEECCTTCTHHHHH
T ss_pred hhHHHHhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 45777885 44 456778999999998743
No 230
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=62.30 E-value=1.7 Score=28.18 Aligned_cols=16 Identities=19% Similarity=0.372 Sum_probs=12.2
Q ss_pred EEEeecCCCCCCceEe
Q psy12526 79 CIFAYGQTGEKTNYLL 94 (103)
Q Consensus 79 ti~aYGqtgSGKT~Tm 94 (103)
.+.-.|++|+|||..+
T Consensus 35 ~v~L~G~nGaGKTTLl 50 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLT 50 (158)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4445799999999744
No 231
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=62.12 E-value=5.3 Score=29.02 Aligned_cols=27 Identities=26% Similarity=0.388 Sum_probs=19.3
Q ss_pred HHHHHhhCC-C--cEEEEeecCCCCCCceE
Q psy12526 67 DILDNAFQG-Y--NACIFAYGQTGEKTNYL 93 (103)
Q Consensus 67 ~lv~~~~~G-~--n~ti~aYGqtgSGKT~T 93 (103)
+-++.+|.| + ...+.-+|++|||||.-
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL 147 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQL 147 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHH
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHH
Confidence 456777754 2 45667799999999864
No 232
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=61.97 E-value=2.8 Score=27.45 Aligned_cols=15 Identities=33% Similarity=0.406 Sum_probs=12.1
Q ss_pred EEEeecCCCCCCceE
Q psy12526 79 CIFAYGQTGEKTNYL 93 (103)
Q Consensus 79 ti~aYGqtgSGKT~T 93 (103)
.|+-.|.+|||||..
T Consensus 27 ~i~l~G~~GsGKsTl 41 (199)
T 3vaa_A 27 RIFLTGYMGAGKTTL 41 (199)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEEcCCCCCHHHH
Confidence 466689999999863
No 233
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=61.61 E-value=2.7 Score=30.00 Aligned_cols=12 Identities=17% Similarity=0.365 Sum_probs=10.3
Q ss_pred eecCCCCCCceE
Q psy12526 82 AYGQTGEKTNYL 93 (103)
Q Consensus 82 aYGqtgSGKT~T 93 (103)
-+|++|||||--
T Consensus 29 i~G~NGsGKS~l 40 (322)
T 1e69_A 29 IVGPNGSGKSNI 40 (322)
T ss_dssp EECCTTTCSTHH
T ss_pred EECCCCCcHHHH
Confidence 589999999863
No 234
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=61.58 E-value=8.2 Score=29.23 Aligned_cols=17 Identities=18% Similarity=0.137 Sum_probs=13.3
Q ss_pred EEEEeecCCCCCCceEe
Q psy12526 78 ACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 78 ~ti~aYGqtgSGKT~Tm 94 (103)
..|+--|.+|+|||.|+
T Consensus 98 ~vI~lvG~~GsGKTTt~ 114 (433)
T 3kl4_A 98 FIIMLVGVQGSGKTTTA 114 (433)
T ss_dssp EEEEECCCTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45555699999999875
No 235
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=61.53 E-value=1.6 Score=29.41 Aligned_cols=13 Identities=23% Similarity=0.401 Sum_probs=10.5
Q ss_pred eecCCCCCCceEe
Q psy12526 82 AYGQTGEKTNYLL 94 (103)
Q Consensus 82 aYGqtgSGKT~Tm 94 (103)
-.|++|||||..+
T Consensus 28 lvGpsGsGKSTLl 40 (218)
T 1z6g_A 28 ICGPSGVGKGTLI 40 (218)
T ss_dssp EECSTTSSHHHHH
T ss_pred EECCCCCCHHHHH
Confidence 3699999999753
No 236
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=61.21 E-value=4.4 Score=26.50 Aligned_cols=17 Identities=24% Similarity=0.433 Sum_probs=13.2
Q ss_pred cEEEEeecCCCCCCceE
Q psy12526 77 NACIFAYGQTGEKTNYL 93 (103)
Q Consensus 77 n~ti~aYGqtgSGKT~T 93 (103)
...|.-.|.+|||||..
T Consensus 25 g~~i~l~G~sGsGKSTl 41 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTL 41 (200)
T ss_dssp CEEEEEECSTTSSHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 34566679999999864
No 237
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=60.53 E-value=1.7 Score=34.03 Aligned_cols=19 Identities=5% Similarity=0.153 Sum_probs=15.8
Q ss_pred cEEEEeecCCCCCCceEec
Q psy12526 77 NACIFAYGQTGEKTNYLLN 95 (103)
Q Consensus 77 n~ti~aYGqtgSGKT~Tm~ 95 (103)
+..++..|-.|||||+||.
T Consensus 15 ~~~~lV~AgaGSGKT~~l~ 33 (673)
T 1uaa_A 15 TGPCLVLAGAGSGKTRVIT 33 (673)
T ss_dssp SSEEEECCCTTSCHHHHHH
T ss_pred CCCEEEEeCCCCChHHHHH
Confidence 4567788999999999875
No 238
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=60.02 E-value=6.1 Score=27.89 Aligned_cols=28 Identities=18% Similarity=0.252 Sum_probs=20.7
Q ss_pred HHHHHhhC-CC--cEEEEeecCCCCCCceEe
Q psy12526 67 DILDNAFQ-GY--NACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 67 ~lv~~~~~-G~--n~ti~aYGqtgSGKT~Tm 94 (103)
+-++.++. |+ ...+.-||..|+|||.-+
T Consensus 85 ~~LD~~l~GGl~~g~i~~i~G~~gsGKT~la 115 (322)
T 2i1q_A 85 SELDSVLGGGLESQSVTEFAGVFGSGKTQIM 115 (322)
T ss_dssp HHHHHHTTSSEETTEEEEEEESTTSSHHHHH
T ss_pred hhHHHhcCCCccCCeEEEEECCCCCCHHHHH
Confidence 56777775 33 456788999999998743
No 239
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=59.84 E-value=2.8 Score=31.66 Aligned_cols=16 Identities=25% Similarity=0.517 Sum_probs=13.3
Q ss_pred EEEEeecCCCCCCceE
Q psy12526 78 ACIFAYGQTGEKTNYL 93 (103)
Q Consensus 78 ~ti~aYGqtgSGKT~T 93 (103)
-.|+-||+.|+|||..
T Consensus 183 rGvLL~GPPGTGKTll 198 (405)
T 4b4t_J 183 KGVILYGPPGTGKTLL 198 (405)
T ss_dssp CCEEEESCSSSSHHHH
T ss_pred CceEEeCCCCCCHHHH
Confidence 3578899999999864
No 240
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=59.62 E-value=9.6 Score=28.31 Aligned_cols=21 Identities=19% Similarity=0.574 Sum_probs=16.6
Q ss_pred CCCcEEEEeecCCCCCCceEe
Q psy12526 74 QGYNACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 74 ~G~n~ti~aYGqtgSGKT~Tm 94 (103)
.|.-..|+-.|..|+|||...
T Consensus 21 ~g~~~~i~l~G~~G~GKTTl~ 41 (359)
T 2ga8_A 21 DNYRVCVILVGSPGSGKSTIA 41 (359)
T ss_dssp TCSCEEEEEECCTTSSHHHHH
T ss_pred cCCeeEEEEECCCCCcHHHHH
Confidence 566666888999999998743
No 241
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=59.30 E-value=3.3 Score=30.15 Aligned_cols=12 Identities=17% Similarity=0.274 Sum_probs=10.2
Q ss_pred EeecCCCCCCce
Q psy12526 81 FAYGQTGEKTNY 92 (103)
Q Consensus 81 ~aYGqtgSGKT~ 92 (103)
.-+|.||+|||-
T Consensus 29 vi~G~NGaGKT~ 40 (371)
T 3auy_A 29 AIIGENGSGKSS 40 (371)
T ss_dssp EEEECTTSSHHH
T ss_pred EEECCCCCCHHH
Confidence 458999999985
No 242
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=59.29 E-value=3.3 Score=32.35 Aligned_cols=18 Identities=11% Similarity=0.121 Sum_probs=14.2
Q ss_pred EEEEeecCCCCCCceEec
Q psy12526 78 ACIFAYGQTGEKTNYLLN 95 (103)
Q Consensus 78 ~ti~aYGqtgSGKT~Tm~ 95 (103)
..++-.|..|+|||+++.
T Consensus 205 ~~~~I~G~pGTGKTt~i~ 222 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTK 222 (574)
T ss_dssp SEEEEECCTTSCHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHH
Confidence 345568999999998763
No 243
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=59.27 E-value=3.8 Score=27.87 Aligned_cols=16 Identities=6% Similarity=-0.093 Sum_probs=13.3
Q ss_pred CcEEEEeecCCCCCCc
Q psy12526 76 YNACIFAYGQTGEKTN 91 (103)
Q Consensus 76 ~n~ti~aYGqtgSGKT 91 (103)
.---.|-||..|||||
T Consensus 19 ~g~l~fiyG~MgsGKT 34 (195)
T 1w4r_A 19 RGQIQVILGPMFSGKS 34 (195)
T ss_dssp CCEEEEEEECTTSCHH
T ss_pred ceEEEEEECCCCCcHH
Confidence 3446788999999999
No 244
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=59.11 E-value=2.1 Score=33.12 Aligned_cols=17 Identities=18% Similarity=0.186 Sum_probs=13.6
Q ss_pred EEEEeecCCCCCCceEe
Q psy12526 78 ACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 78 ~ti~aYGqtgSGKT~Tm 94 (103)
..++-+|++|+|||+.+
T Consensus 109 ~~vll~Gp~GtGKTtla 125 (543)
T 3m6a_A 109 PILCLAGPPGVGKTSLA 125 (543)
T ss_dssp CEEEEESSSSSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 35677999999999753
No 245
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=58.92 E-value=2.1 Score=29.40 Aligned_cols=13 Identities=15% Similarity=0.302 Sum_probs=10.5
Q ss_pred EeecCCCCCCceE
Q psy12526 81 FAYGQTGEKTNYL 93 (103)
Q Consensus 81 ~aYGqtgSGKT~T 93 (103)
--.|++|||||..
T Consensus 35 ~iiG~nGsGKSTL 47 (235)
T 3tif_A 35 SIMGPSGSGKSTM 47 (235)
T ss_dssp EEECSTTSSHHHH
T ss_pred EEECCCCCcHHHH
Confidence 3479999999964
No 246
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=58.43 E-value=3.1 Score=27.31 Aligned_cols=13 Identities=15% Similarity=0.325 Sum_probs=10.7
Q ss_pred EEeecCCCCCCce
Q psy12526 80 IFAYGQTGEKTNY 92 (103)
Q Consensus 80 i~aYGqtgSGKT~ 92 (103)
|.-.|.+|||||.
T Consensus 15 i~l~G~sGsGKsT 27 (204)
T 2qor_A 15 LVVCGPSGVGKGT 27 (204)
T ss_dssp EEEECCTTSCHHH
T ss_pred EEEECCCCCCHHH
Confidence 4457999999986
No 247
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=58.36 E-value=2.7 Score=32.21 Aligned_cols=17 Identities=24% Similarity=0.327 Sum_probs=13.9
Q ss_pred EEEEeecCCCCCCceEe
Q psy12526 78 ACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 78 ~ti~aYGqtgSGKT~Tm 94 (103)
-.|+-||++|+|||+.+
T Consensus 50 ~gvLL~GppGtGKT~La 66 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLA 66 (476)
T ss_dssp SEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 34889999999999753
No 248
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=58.34 E-value=2.5 Score=32.58 Aligned_cols=17 Identities=24% Similarity=0.399 Sum_probs=13.9
Q ss_pred cEEEEeecCCCCCCceE
Q psy12526 77 NACIFAYGQTGEKTNYL 93 (103)
Q Consensus 77 n~ti~aYGqtgSGKT~T 93 (103)
--.|+-||+.|+|||..
T Consensus 243 prGILLyGPPGTGKTlL 259 (467)
T 4b4t_H 243 PKGILLYGPPGTGKTLC 259 (467)
T ss_dssp CSEEEECSCTTSSHHHH
T ss_pred CCceEeeCCCCCcHHHH
Confidence 34588999999999863
No 249
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=58.21 E-value=4 Score=26.22 Aligned_cols=17 Identities=12% Similarity=0.305 Sum_probs=13.0
Q ss_pred cEEEEeecCCCCCCceE
Q psy12526 77 NACIFAYGQTGEKTNYL 93 (103)
Q Consensus 77 n~ti~aYGqtgSGKT~T 93 (103)
...|.-.|..|||||..
T Consensus 13 ~~~i~l~G~~GsGKsT~ 29 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTI 29 (186)
T ss_dssp CEEEEEECCTTSSHHHH
T ss_pred CcEEEEEcCCCCCHHHH
Confidence 34566789999999863
No 250
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=58.08 E-value=3.8 Score=32.25 Aligned_cols=23 Identities=9% Similarity=-0.200 Sum_probs=17.7
Q ss_pred HHHhhCCCcEEEEeecCCCCCCceE
Q psy12526 69 LDNAFQGYNACIFAYGQTGEKTNYL 93 (103)
Q Consensus 69 v~~~~~G~n~ti~aYGqtgSGKT~T 93 (103)
+..+++|.+. +..++||||||..
T Consensus 180 i~~l~~g~dv--lv~a~TGSGKT~~ 202 (618)
T 2whx_A 180 EDIFRKKRLT--IMDLHPGAGKTKR 202 (618)
T ss_dssp GGGGSTTCEE--EECCCTTSSTTTT
T ss_pred HHHHhcCCeE--EEEcCCCCCHHHH
Confidence 4556777764 5689999999976
No 251
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=57.92 E-value=1.4 Score=31.05 Aligned_cols=12 Identities=33% Similarity=0.523 Sum_probs=10.2
Q ss_pred ecCCCCCCceEe
Q psy12526 83 YGQTGEKTNYLL 94 (103)
Q Consensus 83 YGqtgSGKT~Tm 94 (103)
-|++|||||..+
T Consensus 43 iG~nGsGKSTLl 54 (266)
T 4g1u_C 43 IGPNGAGKSTLL 54 (266)
T ss_dssp ECCTTSCHHHHH
T ss_pred ECCCCCcHHHHH
Confidence 699999999743
No 252
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=57.74 E-value=3 Score=27.02 Aligned_cols=15 Identities=20% Similarity=0.337 Sum_probs=12.3
Q ss_pred EEEeecCCCCCCceE
Q psy12526 79 CIFAYGQTGEKTNYL 93 (103)
Q Consensus 79 ti~aYGqtgSGKT~T 93 (103)
.|+-.|..|||||+.
T Consensus 12 ~I~l~G~~GsGKSTv 26 (184)
T 1y63_A 12 NILITGTPGTGKTSM 26 (184)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 366799999999863
No 253
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=57.73 E-value=1.4 Score=31.25 Aligned_cols=13 Identities=23% Similarity=0.360 Sum_probs=10.5
Q ss_pred eecCCCCCCceEe
Q psy12526 82 AYGQTGEKTNYLL 94 (103)
Q Consensus 82 aYGqtgSGKT~Tm 94 (103)
--|++|||||..+
T Consensus 39 iiGpnGsGKSTLl 51 (275)
T 3gfo_A 39 ILGGNGVGKSTLF 51 (275)
T ss_dssp EECCTTSSHHHHH
T ss_pred EECCCCCCHHHHH
Confidence 3699999999753
No 254
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=57.16 E-value=12 Score=28.51 Aligned_cols=19 Identities=11% Similarity=0.193 Sum_probs=15.3
Q ss_pred cEEEEeecCCCCCCceEec
Q psy12526 77 NACIFAYGQTGEKTNYLLN 95 (103)
Q Consensus 77 n~ti~aYGqtgSGKT~Tm~ 95 (103)
...|+-.|.+|+|||+|..
T Consensus 100 p~vIlivG~~G~GKTTt~~ 118 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVA 118 (443)
T ss_dssp SEEEEEECCTTSSHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHH
Confidence 4567778999999999753
No 255
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=56.91 E-value=2.4 Score=30.67 Aligned_cols=16 Identities=19% Similarity=0.227 Sum_probs=12.7
Q ss_pred EEEeecCCCCCCceEe
Q psy12526 79 CIFAYGQTGEKTNYLL 94 (103)
Q Consensus 79 ti~aYGqtgSGKT~Tm 94 (103)
.|.-.|++|+|||.|+
T Consensus 107 vI~ivG~~G~GKTT~~ 122 (320)
T 1zu4_A 107 IFMLVGVNGTGKTTSL 122 (320)
T ss_dssp EEEEESSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4555699999999875
No 256
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=56.75 E-value=3.6 Score=33.48 Aligned_cols=17 Identities=12% Similarity=0.079 Sum_probs=13.9
Q ss_pred EEEeecCCCCCCceEec
Q psy12526 79 CIFAYGQTGEKTNYLLN 95 (103)
Q Consensus 79 ti~aYGqtgSGKT~Tm~ 95 (103)
.++..|..|+|||+|+.
T Consensus 377 ~~lI~GppGTGKT~~i~ 393 (802)
T 2xzl_A 377 LSLIQGPPGTGKTVTSA 393 (802)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred CEEEECCCCCCHHHHHH
Confidence 35679999999999864
No 257
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=56.60 E-value=3.5 Score=27.93 Aligned_cols=16 Identities=13% Similarity=0.162 Sum_probs=12.7
Q ss_pred EEEEeecCCCCCCceE
Q psy12526 78 ACIFAYGQTGEKTNYL 93 (103)
Q Consensus 78 ~ti~aYGqtgSGKT~T 93 (103)
-.|.-.|.+|||||..
T Consensus 28 ~~i~l~G~~GsGKSTl 43 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTV 43 (246)
T ss_dssp CEEEEECCTTSSHHHH
T ss_pred cEEEEECCCCCCHHHH
Confidence 3566689999999874
No 258
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=56.44 E-value=4.7 Score=26.83 Aligned_cols=13 Identities=31% Similarity=0.491 Sum_probs=10.7
Q ss_pred EeecCCCCCCceE
Q psy12526 81 FAYGQTGEKTNYL 93 (103)
Q Consensus 81 ~aYGqtgSGKT~T 93 (103)
.-+|++|||||.-
T Consensus 27 ~I~G~NgsGKSti 39 (203)
T 3qks_A 27 LIIGQNGSGKSSL 39 (203)
T ss_dssp EEECCTTSSHHHH
T ss_pred EEEcCCCCCHHHH
Confidence 4589999999864
No 259
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=56.21 E-value=11 Score=23.83 Aligned_cols=22 Identities=9% Similarity=0.134 Sum_probs=17.2
Q ss_pred hhCCCcEEEEeecCCCCCCceE
Q psy12526 72 AFQGYNACIFAYGQTGEKTNYL 93 (103)
Q Consensus 72 ~~~G~n~ti~aYGqtgSGKT~T 93 (103)
++.-....|.-.|..|+|||.-
T Consensus 11 ~~~~~~~~i~v~G~~~~GKssl 32 (187)
T 1zj6_A 11 LFNHQEHKVIIVGLDNAGKTTI 32 (187)
T ss_dssp HHTTSCEEEEEEESTTSSHHHH
T ss_pred hcCCCccEEEEECCCCCCHHHH
Confidence 4555667788899999999863
No 260
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=56.11 E-value=6 Score=28.18 Aligned_cols=28 Identities=21% Similarity=0.325 Sum_probs=20.1
Q ss_pred HHHHHhhCC-C--cEEEEeecCCCCCCceEe
Q psy12526 67 DILDNAFQG-Y--NACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 67 ~lv~~~~~G-~--n~ti~aYGqtgSGKT~Tm 94 (103)
+-++.++.| + ...+.-||..|+|||..+
T Consensus 94 ~~LD~~L~GGl~~G~i~~i~G~~GsGKT~la 124 (324)
T 2z43_A 94 QALDGLLAGGIETRTMTEFFGEFGSGKTQLC 124 (324)
T ss_dssp HHHHHHTTTSEETTSEEEEEESTTSSHHHHH
T ss_pred hhHHHhcCCCCCCCcEEEEECCCCCCHhHHH
Confidence 557777753 3 345778999999998643
No 261
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=56.07 E-value=4.1 Score=28.04 Aligned_cols=18 Identities=17% Similarity=0.316 Sum_probs=13.8
Q ss_pred CcEEEEeecCCCCCCceE
Q psy12526 76 YNACIFAYGQTGEKTNYL 93 (103)
Q Consensus 76 ~n~ti~aYGqtgSGKT~T 93 (103)
+...|+-.|.||+|||..
T Consensus 33 ~g~~ilI~GpsGsGKStL 50 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSET 50 (205)
T ss_dssp TTEEEEEECCCTTTTHHH
T ss_pred CCEEEEEECCCCCCHHHH
Confidence 345577889999999853
No 262
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=55.80 E-value=3.3 Score=27.01 Aligned_cols=15 Identities=20% Similarity=0.386 Sum_probs=12.2
Q ss_pred EEEeecCCCCCCceE
Q psy12526 79 CIFAYGQTGEKTNYL 93 (103)
Q Consensus 79 ti~aYGqtgSGKT~T 93 (103)
.|.-.|..|||||..
T Consensus 20 ~I~l~G~~GsGKSTl 34 (202)
T 3t61_A 20 SIVVMGVSGSGKSSV 34 (202)
T ss_dssp CEEEECSTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 466689999999863
No 263
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=54.89 E-value=4.3 Score=29.93 Aligned_cols=14 Identities=21% Similarity=0.323 Sum_probs=12.1
Q ss_pred EEEeecCCCCCCce
Q psy12526 79 CIFAYGQTGEKTNY 92 (103)
Q Consensus 79 ti~aYGqtgSGKT~ 92 (103)
.|+-.|.||||||.
T Consensus 42 lIvI~GPTgsGKTt 55 (339)
T 3a8t_A 42 LLVLMGATGTGKSR 55 (339)
T ss_dssp EEEEECSTTSSHHH
T ss_pred eEEEECCCCCCHHH
Confidence 57788999999985
No 264
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=54.86 E-value=4 Score=33.22 Aligned_cols=17 Identities=12% Similarity=0.079 Sum_probs=14.0
Q ss_pred EEEeecCCCCCCceEec
Q psy12526 79 CIFAYGQTGEKTNYLLN 95 (103)
Q Consensus 79 ti~aYGqtgSGKT~Tm~ 95 (103)
.++-.|..|+|||+|+.
T Consensus 373 ~~lI~GppGTGKT~ti~ 389 (800)
T 2wjy_A 373 LSLIQGPPGTGKTVTSA 389 (800)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred eEEEEcCCCCCHHHHHH
Confidence 35679999999999864
No 265
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=54.83 E-value=3.6 Score=30.02 Aligned_cols=22 Identities=18% Similarity=0.412 Sum_probs=18.9
Q ss_pred hhCCCcEEEEeecCCCCCCceE
Q psy12526 72 AFQGYNACIFAYGQTGEKTNYL 93 (103)
Q Consensus 72 ~~~G~n~ti~aYGqtgSGKT~T 93 (103)
+++|++..|...|.+|+|||..
T Consensus 32 ~~~~~~~~I~vvG~~g~GKSTL 53 (361)
T 2qag_A 32 VKKGFEFTLMVVGESGLGKSTL 53 (361)
T ss_dssp HHHCCEECEEECCCTTSCHHHH
T ss_pred ecCCCCEEEEEEcCCCCCHHHH
Confidence 5678888888999999999963
No 266
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=54.58 E-value=1.7 Score=29.61 Aligned_cols=13 Identities=15% Similarity=0.138 Sum_probs=10.4
Q ss_pred eecCCCCCCceEe
Q psy12526 82 AYGQTGEKTNYLL 94 (103)
Q Consensus 82 aYGqtgSGKT~Tm 94 (103)
--|.+|||||..+
T Consensus 30 I~G~~GsGKSTl~ 42 (245)
T 2jeo_A 30 VSGGTASGKSTVC 42 (245)
T ss_dssp EECSTTSSHHHHH
T ss_pred EECCCCCCHHHHH
Confidence 3599999999753
No 267
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=54.55 E-value=2.2 Score=35.88 Aligned_cols=15 Identities=13% Similarity=0.209 Sum_probs=12.5
Q ss_pred EeecCCCCCCceEec
Q psy12526 81 FAYGQTGEKTNYLLN 95 (103)
Q Consensus 81 ~aYGqtgSGKT~Tm~ 95 (103)
+...+||||||.||+
T Consensus 304 li~~~TGSGKT~t~~ 318 (1038)
T 2w00_A 304 YIWHTTGSGKTLTSF 318 (1038)
T ss_dssp EEEECTTSSHHHHHH
T ss_pred EEEecCCCCHHHHHH
Confidence 457799999999974
No 268
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=54.19 E-value=21 Score=25.23 Aligned_cols=16 Identities=19% Similarity=0.210 Sum_probs=12.4
Q ss_pred EEEeecCCCCCCceEe
Q psy12526 79 CIFAYGQTGEKTNYLL 94 (103)
Q Consensus 79 ti~aYGqtgSGKT~Tm 94 (103)
.|...|.+|+|||.++
T Consensus 100 vi~i~G~~G~GKTT~~ 115 (297)
T 1j8m_F 100 VIMLVGVQGTGKTTTA 115 (297)
T ss_dssp EEEEECSSCSSTTHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4445699999999865
No 269
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=53.81 E-value=1.9 Score=32.18 Aligned_cols=13 Identities=31% Similarity=0.363 Sum_probs=10.8
Q ss_pred eecCCCCCCceEe
Q psy12526 82 AYGQTGEKTNYLL 94 (103)
Q Consensus 82 aYGqtgSGKT~Tm 94 (103)
-.|++|||||.+|
T Consensus 34 llGpsGsGKSTLL 46 (381)
T 3rlf_A 34 FVGPSGCGKSTLL 46 (381)
T ss_dssp EECCTTSSHHHHH
T ss_pred EEcCCCchHHHHH
Confidence 3799999999854
No 270
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=53.76 E-value=4.1 Score=29.83 Aligned_cols=15 Identities=27% Similarity=0.370 Sum_probs=12.2
Q ss_pred EEEEeecCCCCCCce
Q psy12526 78 ACIFAYGQTGEKTNY 92 (103)
Q Consensus 78 ~ti~aYGqtgSGKT~ 92 (103)
-.|+-.|.||||||.
T Consensus 11 ~~i~i~GptgsGKt~ 25 (316)
T 3foz_A 11 KAIFLMGPTASGKTA 25 (316)
T ss_dssp EEEEEECCTTSCHHH
T ss_pred cEEEEECCCccCHHH
Confidence 356678999999985
No 271
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=53.74 E-value=8 Score=30.38 Aligned_cols=35 Identities=20% Similarity=0.218 Sum_probs=22.7
Q ss_pred CCCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceE
Q psy12526 53 NFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYL 93 (103)
Q Consensus 53 ~~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~T 93 (103)
+...|.++-+.+. +.+.+|.+ +++-.+||+|||..
T Consensus 4 ~R~~Q~~~~~~v~----~~l~~~~~--~~~~apTGtGKT~a 38 (620)
T 4a15_A 4 NRQYQVEAIDFLR----SSLQKSYG--VALESPTGSGKTIM 38 (620)
T ss_dssp -CHHHHHHHHHHH----HHHHHSSE--EEEECCTTSCHHHH
T ss_pred CCHHHHHHHHHHH----HHHHcCCC--EEEECCCCCCHHHH
Confidence 4456766665554 33445654 66788999999964
No 272
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=53.56 E-value=4.4 Score=32.74 Aligned_cols=14 Identities=21% Similarity=0.318 Sum_probs=11.7
Q ss_pred EEEeecCCCCCCce
Q psy12526 79 CIFAYGQTGEKTNY 92 (103)
Q Consensus 79 ti~aYGqtgSGKT~ 92 (103)
.++..|+||||||.
T Consensus 111 ~vii~gpTGSGKTt 124 (773)
T 2xau_A 111 IMVFVGETGSGKTT 124 (773)
T ss_dssp EEEEECCTTSSHHH
T ss_pred eEEEECCCCCCHHH
Confidence 35578999999997
No 273
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=53.54 E-value=2.8 Score=28.47 Aligned_cols=14 Identities=14% Similarity=0.214 Sum_probs=10.9
Q ss_pred EEeecCCCCCCceE
Q psy12526 80 IFAYGQTGEKTNYL 93 (103)
Q Consensus 80 i~aYGqtgSGKT~T 93 (103)
+.-.|++|||||..
T Consensus 19 i~l~GpsGsGKSTL 32 (219)
T 1s96_A 19 YIVSAPSGAGKSSL 32 (219)
T ss_dssp EEEECCTTSCHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 33469999999874
No 274
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=53.47 E-value=2.8 Score=30.10 Aligned_cols=17 Identities=12% Similarity=-0.111 Sum_probs=12.7
Q ss_pred EEEEeecCCCCCCceEe
Q psy12526 78 ACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 78 ~ti~aYGqtgSGKT~Tm 94 (103)
-.|--.|.+|||||..+
T Consensus 91 ~ivgI~G~sGsGKSTL~ 107 (312)
T 3aez_A 91 FIIGVAGSVAVGKSTTA 107 (312)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred EEEEEECCCCchHHHHH
Confidence 34445699999999754
No 275
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=53.40 E-value=8.9 Score=28.39 Aligned_cols=15 Identities=13% Similarity=0.069 Sum_probs=12.4
Q ss_pred EEEeecCCCCCCceE
Q psy12526 79 CIFAYGQTGEKTNYL 93 (103)
Q Consensus 79 ti~aYGqtgSGKT~T 93 (103)
.+.-+|.+|+|||..
T Consensus 171 ~i~l~G~~GsGKSTl 185 (377)
T 1svm_A 171 YWLFKGPIDSGKTTL 185 (377)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 566799999999864
No 276
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=53.30 E-value=4.2 Score=29.71 Aligned_cols=12 Identities=25% Similarity=0.360 Sum_probs=10.2
Q ss_pred eecCCCCCCceE
Q psy12526 82 AYGQTGEKTNYL 93 (103)
Q Consensus 82 aYGqtgSGKT~T 93 (103)
-.|+||||||.-
T Consensus 28 i~G~NGaGKTTl 39 (365)
T 3qf7_A 28 VEGPNGAGKSSL 39 (365)
T ss_dssp EECCTTSSHHHH
T ss_pred EECCCCCCHHHH
Confidence 589999999853
No 277
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=52.89 E-value=3.6 Score=31.02 Aligned_cols=16 Identities=19% Similarity=0.216 Sum_probs=13.2
Q ss_pred EEEeecCCCCCCceEe
Q psy12526 79 CIFAYGQTGEKTNYLL 94 (103)
Q Consensus 79 ti~aYGqtgSGKT~Tm 94 (103)
.|.-.|.+|+|||++.
T Consensus 101 vI~ivG~~GvGKTTla 116 (432)
T 2v3c_C 101 VILLVGIQGSGKTTTA 116 (432)
T ss_dssp CEEEECCSSSSTTHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4666899999999875
No 278
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=52.44 E-value=4.5 Score=30.95 Aligned_cols=16 Identities=25% Similarity=0.517 Sum_probs=13.6
Q ss_pred EEEEeecCCCCCCceE
Q psy12526 78 ACIFAYGQTGEKTNYL 93 (103)
Q Consensus 78 ~ti~aYGqtgSGKT~T 93 (103)
--|+-||+.|+|||..
T Consensus 217 rGvLLyGPPGTGKTlL 232 (437)
T 4b4t_I 217 KGVILYGAPGTGKTLL 232 (437)
T ss_dssp SEEEEESSTTTTHHHH
T ss_pred CCCceECCCCchHHHH
Confidence 4688999999999863
No 279
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=52.42 E-value=5.3 Score=31.83 Aligned_cols=18 Identities=6% Similarity=-0.177 Sum_probs=14.3
Q ss_pred CCCcEEEEeecCCCCCCceE
Q psy12526 74 QGYNACIFAYGQTGEKTNYL 93 (103)
Q Consensus 74 ~G~n~ti~aYGqtgSGKT~T 93 (103)
+|.| ++..++||||||..
T Consensus 240 ~g~d--vlv~apTGSGKTl~ 257 (673)
T 2wv9_A 240 KRQL--TVLDLHPGAGKTRR 257 (673)
T ss_dssp TTCE--EEECCCTTTTTTTT
T ss_pred cCCe--EEEEeCCCCCHHHH
Confidence 5665 46789999999975
No 280
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=52.26 E-value=7.6 Score=28.27 Aligned_cols=27 Identities=26% Similarity=0.299 Sum_probs=18.9
Q ss_pred HHHHHhhC--CC--cEEEEeecCCCCCCceE
Q psy12526 67 DILDNAFQ--GY--NACIFAYGQTGEKTNYL 93 (103)
Q Consensus 67 ~lv~~~~~--G~--n~ti~aYGqtgSGKT~T 93 (103)
+-++.++. |+ ...+.-||..|||||..
T Consensus 47 ~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtL 77 (349)
T 2zr9_A 47 ISLDVALGIGGLPRGRVIEIYGPESSGKTTV 77 (349)
T ss_dssp HHHHHHTSSSSEETTSEEEEEESTTSSHHHH
T ss_pred HHHHHHhccCCccCCeEEEEECCCCCCHHHH
Confidence 34566666 33 34567799999999875
No 281
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=51.87 E-value=4.8 Score=27.78 Aligned_cols=16 Identities=13% Similarity=-0.016 Sum_probs=12.8
Q ss_pred EEEeecCCCCCCceEe
Q psy12526 79 CIFAYGQTGEKTNYLL 94 (103)
Q Consensus 79 ti~aYGqtgSGKT~Tm 94 (103)
.+.-+|.+|||||..+
T Consensus 32 i~~i~G~~GsGKTtl~ 47 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLA 47 (279)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 4567999999998743
No 282
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=51.85 E-value=5.2 Score=29.45 Aligned_cols=16 Identities=13% Similarity=0.208 Sum_probs=12.9
Q ss_pred EEEEeecCCCCCCceE
Q psy12526 78 ACIFAYGQTGEKTNYL 93 (103)
Q Consensus 78 ~ti~aYGqtgSGKT~T 93 (103)
..++-||..|+|||+-
T Consensus 124 sviLI~GpPGsGKTtL 139 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPL 139 (331)
T ss_dssp EEEEEECSCSSSHHHH
T ss_pred cEEEEEcCCCCCHHHH
Confidence 3457799999999974
No 283
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=51.70 E-value=3.9 Score=26.26 Aligned_cols=14 Identities=29% Similarity=0.439 Sum_probs=11.7
Q ss_pred EEEeecCCCCCCce
Q psy12526 79 CIFAYGQTGEKTNY 92 (103)
Q Consensus 79 ti~aYGqtgSGKT~ 92 (103)
.|.-.|..|||||+
T Consensus 14 ~I~l~G~~GsGKsT 27 (199)
T 2bwj_A 14 IIFIIGGPGSGKGT 27 (199)
T ss_dssp EEEEEECTTSSHHH
T ss_pred EEEEECCCCCCHHH
Confidence 46678999999986
No 284
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=51.62 E-value=3.2 Score=28.64 Aligned_cols=13 Identities=23% Similarity=0.391 Sum_probs=10.5
Q ss_pred EeecCCCCCCceE
Q psy12526 81 FAYGQTGEKTNYL 93 (103)
Q Consensus 81 ~aYGqtgSGKT~T 93 (103)
--.|++|||||..
T Consensus 28 ~liG~nGsGKSTL 40 (240)
T 2onk_A 28 VLLGPTGAGKSVF 40 (240)
T ss_dssp EEECCTTSSHHHH
T ss_pred EEECCCCCCHHHH
Confidence 3469999999974
No 285
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=51.55 E-value=2.9 Score=28.37 Aligned_cols=12 Identities=25% Similarity=0.423 Sum_probs=10.0
Q ss_pred eecCCCCCCceE
Q psy12526 82 AYGQTGEKTNYL 93 (103)
Q Consensus 82 aYGqtgSGKT~T 93 (103)
-.|++|||||..
T Consensus 35 iiG~nGsGKSTL 46 (224)
T 2pcj_A 35 IIGASGSGKSTL 46 (224)
T ss_dssp EEECTTSCHHHH
T ss_pred EECCCCCCHHHH
Confidence 359999999964
No 286
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=51.47 E-value=3.3 Score=28.74 Aligned_cols=13 Identities=23% Similarity=0.437 Sum_probs=10.5
Q ss_pred eecCCCCCCceEe
Q psy12526 82 AYGQTGEKTNYLL 94 (103)
Q Consensus 82 aYGqtgSGKT~Tm 94 (103)
-.|++|||||..+
T Consensus 38 liG~nGsGKSTLl 50 (257)
T 1g6h_A 38 IIGPNGSGKSTLI 50 (257)
T ss_dssp EECSTTSSHHHHH
T ss_pred EECCCCCCHHHHH
Confidence 4699999999743
No 287
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=51.46 E-value=3.3 Score=28.44 Aligned_cols=13 Identities=23% Similarity=0.307 Sum_probs=10.5
Q ss_pred eecCCCCCCceEe
Q psy12526 82 AYGQTGEKTNYLL 94 (103)
Q Consensus 82 aYGqtgSGKT~Tm 94 (103)
-.|++|||||..+
T Consensus 37 l~G~nGsGKSTLl 49 (240)
T 1ji0_A 37 LIGANGAGKTTTL 49 (240)
T ss_dssp EECSTTSSHHHHH
T ss_pred EECCCCCCHHHHH
Confidence 4699999999743
No 288
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=51.43 E-value=9.5 Score=26.96 Aligned_cols=17 Identities=12% Similarity=-0.080 Sum_probs=12.6
Q ss_pred EEEEeecCCCCCCceEe
Q psy12526 78 ACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 78 ~ti~aYGqtgSGKT~Tm 94 (103)
-.|---|.+|||||..+
T Consensus 81 ~iigI~G~~GsGKSTl~ 97 (308)
T 1sq5_A 81 YIISIAGSVAVGKSTTA 97 (308)
T ss_dssp EEEEEEECTTSSHHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 34445699999999754
No 289
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=51.28 E-value=3.3 Score=28.91 Aligned_cols=13 Identities=38% Similarity=0.526 Sum_probs=10.5
Q ss_pred eecCCCCCCceEe
Q psy12526 82 AYGQTGEKTNYLL 94 (103)
Q Consensus 82 aYGqtgSGKT~Tm 94 (103)
-.|++|||||..+
T Consensus 38 liG~nGsGKSTLl 50 (266)
T 2yz2_A 38 VAGNTGSGKSTLL 50 (266)
T ss_dssp EECSTTSSHHHHH
T ss_pred EECCCCCcHHHHH
Confidence 4699999999743
No 290
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=50.96 E-value=5.5 Score=26.33 Aligned_cols=24 Identities=21% Similarity=0.494 Sum_probs=16.9
Q ss_pred HHHhhC-CC--cEEEEeecCCCCCCce
Q psy12526 69 LDNAFQ-GY--NACIFAYGQTGEKTNY 92 (103)
Q Consensus 69 v~~~~~-G~--n~ti~aYGqtgSGKT~ 92 (103)
++.++. |+ ...+.-+|.+|+|||.
T Consensus 19 LD~~l~GGl~~G~l~~i~G~pG~GKT~ 45 (251)
T 2zts_A 19 FDELIEGGFPEGTTVLLTGGTGTGKTT 45 (251)
T ss_dssp TGGGTTTSEETTCEEEEECCTTSSHHH
T ss_pred HHHhhcCCCCCCeEEEEEeCCCCCHHH
Confidence 455565 43 3456779999999985
No 291
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=50.96 E-value=5 Score=25.44 Aligned_cols=18 Identities=22% Similarity=0.292 Sum_probs=14.2
Q ss_pred cEEEEeecCCCCCCceEe
Q psy12526 77 NACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 77 n~ti~aYGqtgSGKT~Tm 94 (103)
...|...|.+|+|||..+
T Consensus 48 ~~~i~vvG~~g~GKSsll 65 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLL 65 (193)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 346788999999998643
No 292
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=50.76 E-value=4.5 Score=26.25 Aligned_cols=15 Identities=27% Similarity=0.430 Sum_probs=12.3
Q ss_pred EEEeecCCCCCCceE
Q psy12526 79 CIFAYGQTGEKTNYL 93 (103)
Q Consensus 79 ti~aYGqtgSGKT~T 93 (103)
.|.-.|..|||||+.
T Consensus 17 ~I~l~G~~GsGKsT~ 31 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQ 31 (203)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 466789999999863
No 293
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=50.66 E-value=4.3 Score=32.93 Aligned_cols=17 Identities=24% Similarity=0.473 Sum_probs=13.7
Q ss_pred EEEEeecCCCCCCceEe
Q psy12526 78 ACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 78 ~ti~aYGqtgSGKT~Tm 94 (103)
..|+-||.+|+|||+.+
T Consensus 239 ~~vLL~Gp~GtGKTtLa 255 (806)
T 1ypw_A 239 RGILLYGPPGTGKTLIA 255 (806)
T ss_dssp CEEEECSCTTSSHHHHH
T ss_pred CeEEEECcCCCCHHHHH
Confidence 35778999999999743
No 294
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=50.65 E-value=5.6 Score=25.96 Aligned_cols=15 Identities=13% Similarity=0.348 Sum_probs=11.5
Q ss_pred EEEeecCCCCCCceE
Q psy12526 79 CIFAYGQTGEKTNYL 93 (103)
Q Consensus 79 ti~aYGqtgSGKT~T 93 (103)
.|.--|.+|||||..
T Consensus 31 ~i~l~G~~GsGKSTl 45 (200)
T 4eun_A 31 HVVVMGVSGSGKTTI 45 (200)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 344569999999864
No 295
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=50.59 E-value=3.1 Score=28.31 Aligned_cols=13 Identities=31% Similarity=0.307 Sum_probs=10.5
Q ss_pred eecCCCCCCceEe
Q psy12526 82 AYGQTGEKTNYLL 94 (103)
Q Consensus 82 aYGqtgSGKT~Tm 94 (103)
-.|++|||||..|
T Consensus 40 iiG~NGsGKSTLl 52 (214)
T 1sgw_A 40 FHGPNGIGKTTLL 52 (214)
T ss_dssp EECCTTSSHHHHH
T ss_pred EECCCCCCHHHHH
Confidence 3699999999743
No 296
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=50.50 E-value=7.7 Score=28.55 Aligned_cols=27 Identities=26% Similarity=0.336 Sum_probs=19.8
Q ss_pred HHHHHhhC--CC--cEEEEeecCCCCCCceE
Q psy12526 67 DILDNAFQ--GY--NACIFAYGQTGEKTNYL 93 (103)
Q Consensus 67 ~lv~~~~~--G~--n~ti~aYGqtgSGKT~T 93 (103)
+-++.++. |+ ...+.-||..|+|||.-
T Consensus 47 ~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTL 77 (356)
T 3hr8_A 47 LAIDIATGVGGYPRGRIVEIFGQESSGKTTL 77 (356)
T ss_dssp HHHHHHTSSSSEETTEEEEEEESTTSSHHHH
T ss_pred HHHHHHhccCCccCCcEEEEECCCCCCHHHH
Confidence 45677776 44 35677899999999864
No 297
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=49.88 E-value=4.5 Score=30.81 Aligned_cols=15 Identities=27% Similarity=0.357 Sum_probs=12.7
Q ss_pred EEEeecCCCCCCceE
Q psy12526 79 CIFAYGQTGEKTNYL 93 (103)
Q Consensus 79 ti~aYGqtgSGKT~T 93 (103)
.|+-||.+|+|||+.
T Consensus 52 ~iLl~GppGtGKT~l 66 (444)
T 1g41_A 52 NILMIGPTGVGKTEI 66 (444)
T ss_dssp CEEEECCTTSSHHHH
T ss_pred eEEEEcCCCCCHHHH
Confidence 477899999999874
No 298
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=49.79 E-value=3.6 Score=28.71 Aligned_cols=12 Identities=17% Similarity=0.379 Sum_probs=10.0
Q ss_pred eecCCCCCCceE
Q psy12526 82 AYGQTGEKTNYL 93 (103)
Q Consensus 82 aYGqtgSGKT~T 93 (103)
-.|++|||||..
T Consensus 37 liG~nGsGKSTL 48 (262)
T 1b0u_A 37 IIGSSGSGKSTF 48 (262)
T ss_dssp EECCTTSSHHHH
T ss_pred EECCCCCCHHHH
Confidence 369999999974
No 299
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=49.78 E-value=3.6 Score=30.36 Aligned_cols=13 Identities=23% Similarity=0.273 Sum_probs=10.8
Q ss_pred eecCCCCCCceEe
Q psy12526 82 AYGQTGEKTNYLL 94 (103)
Q Consensus 82 aYGqtgSGKT~Tm 94 (103)
-.|++|||||..|
T Consensus 34 llGpnGsGKSTLL 46 (359)
T 2yyz_A 34 LLGPSGCGKTTTL 46 (359)
T ss_dssp EECSTTSSHHHHH
T ss_pred EEcCCCchHHHHH
Confidence 3699999999854
No 300
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=49.73 E-value=4.7 Score=27.07 Aligned_cols=14 Identities=14% Similarity=0.157 Sum_probs=11.9
Q ss_pred EEEeecCCCCCCce
Q psy12526 79 CIFAYGQTGEKTNY 92 (103)
Q Consensus 79 ti~aYGqtgSGKT~ 92 (103)
.|+-.|..|||||+
T Consensus 18 ~I~l~G~~GsGKsT 31 (233)
T 1ak2_A 18 RAVLLGPPGAGKGT 31 (233)
T ss_dssp EEEEECCTTSSHHH
T ss_pred EEEEECCCCCCHHH
Confidence 46679999999986
No 301
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=49.69 E-value=4.1 Score=29.97 Aligned_cols=16 Identities=31% Similarity=0.474 Sum_probs=12.5
Q ss_pred EEEeecCCCCCCceEe
Q psy12526 79 CIFAYGQTGEKTNYLL 94 (103)
Q Consensus 79 ti~aYGqtgSGKT~Tm 94 (103)
.+.-+|++|||||..+
T Consensus 28 ~~~i~G~nG~GKttll 43 (359)
T 2o5v_A 28 VTGIYGENGAGKTNLL 43 (359)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCChhHHH
Confidence 4456899999999754
No 302
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=49.42 E-value=7.8 Score=24.34 Aligned_cols=19 Identities=5% Similarity=0.086 Sum_probs=14.3
Q ss_pred CCcEEEEeecCCCCCCceE
Q psy12526 75 GYNACIFAYGQTGEKTNYL 93 (103)
Q Consensus 75 G~n~ti~aYGqtgSGKT~T 93 (103)
.....|.-.|..|+|||.-
T Consensus 16 ~~~~~i~v~G~~~~GKssl 34 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTI 34 (186)
T ss_dssp -CCEEEEEECSTTSSHHHH
T ss_pred CCeeEEEEECCCCCCHHHH
Confidence 3445677899999999864
No 303
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=49.17 E-value=3.7 Score=28.57 Aligned_cols=13 Identities=23% Similarity=0.342 Sum_probs=10.6
Q ss_pred EeecCCCCCCceE
Q psy12526 81 FAYGQTGEKTNYL 93 (103)
Q Consensus 81 ~aYGqtgSGKT~T 93 (103)
.-.|++|||||..
T Consensus 50 ~i~G~nGsGKSTL 62 (260)
T 2ghi_A 50 ALVGHTGSGKSTI 62 (260)
T ss_dssp EEECSTTSSHHHH
T ss_pred EEECCCCCCHHHH
Confidence 3479999999974
No 304
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=48.97 E-value=3.8 Score=30.23 Aligned_cols=13 Identities=23% Similarity=0.460 Sum_probs=10.7
Q ss_pred eecCCCCCCceEe
Q psy12526 82 AYGQTGEKTNYLL 94 (103)
Q Consensus 82 aYGqtgSGKT~Tm 94 (103)
-.|++|||||..|
T Consensus 46 llGpnGsGKSTLL 58 (355)
T 1z47_A 46 LLGPSGSGKTTIL 58 (355)
T ss_dssp EECSTTSSHHHHH
T ss_pred EECCCCCcHHHHH
Confidence 3699999999854
No 305
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=48.91 E-value=4.3 Score=27.82 Aligned_cols=13 Identities=15% Similarity=0.199 Sum_probs=10.5
Q ss_pred EeecCCCCCCceE
Q psy12526 81 FAYGQTGEKTNYL 93 (103)
Q Consensus 81 ~aYGqtgSGKT~T 93 (103)
.-.|++|||||..
T Consensus 32 ~i~G~nGsGKSTL 44 (243)
T 1mv5_A 32 AFAGPSGGGKSTI 44 (243)
T ss_dssp EEECCTTSSHHHH
T ss_pred EEECCCCCCHHHH
Confidence 3469999999974
No 306
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=48.90 E-value=3.8 Score=28.75 Aligned_cols=13 Identities=23% Similarity=0.465 Sum_probs=10.5
Q ss_pred eecCCCCCCceEe
Q psy12526 82 AYGQTGEKTNYLL 94 (103)
Q Consensus 82 aYGqtgSGKT~Tm 94 (103)
-.|++|||||..+
T Consensus 55 liG~NGsGKSTLl 67 (263)
T 2olj_A 55 VIGPSGSGKSTFL 67 (263)
T ss_dssp EECCTTSSHHHHH
T ss_pred EEcCCCCcHHHHH
Confidence 4699999999743
No 307
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=48.90 E-value=3.8 Score=28.31 Aligned_cols=12 Identities=25% Similarity=0.459 Sum_probs=10.1
Q ss_pred eecCCCCCCceE
Q psy12526 82 AYGQTGEKTNYL 93 (103)
Q Consensus 82 aYGqtgSGKT~T 93 (103)
-.|++|||||..
T Consensus 40 i~G~nGsGKSTL 51 (247)
T 2ff7_A 40 IVGRSGSGKSTL 51 (247)
T ss_dssp EECSTTSSHHHH
T ss_pred EECCCCCCHHHH
Confidence 469999999974
No 308
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=48.79 E-value=3.8 Score=30.32 Aligned_cols=13 Identities=23% Similarity=0.273 Sum_probs=10.8
Q ss_pred eecCCCCCCceEe
Q psy12526 82 AYGQTGEKTNYLL 94 (103)
Q Consensus 82 aYGqtgSGKT~Tm 94 (103)
-.|++|||||..|
T Consensus 34 llGpnGsGKSTLL 46 (372)
T 1g29_1 34 LLGPSGCGKTTTL 46 (372)
T ss_dssp EECSTTSSHHHHH
T ss_pred EECCCCcHHHHHH
Confidence 3699999999854
No 309
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=48.61 E-value=6.3 Score=29.31 Aligned_cols=21 Identities=10% Similarity=0.052 Sum_probs=14.3
Q ss_pred hCCCcEEEEeecCCCCCCceEec
Q psy12526 73 FQGYNACIFAYGQTGEKTNYLLN 95 (103)
Q Consensus 73 ~~G~n~ti~aYGqtgSGKT~Tm~ 95 (103)
..|.++ |+ .-+||+|||.++.
T Consensus 54 ~~~~~~-il-ad~~GlGKT~~ai 74 (500)
T 1z63_A 54 KLGFGI-CL-ADDMGLGKTLQTI 74 (500)
T ss_dssp HTTCCE-EE-CCCTTSCHHHHHH
T ss_pred hCCCCE-EE-EeCCCCcHHHHHH
Confidence 356554 44 4699999998753
No 310
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=48.59 E-value=3.6 Score=30.46 Aligned_cols=13 Identities=31% Similarity=0.401 Sum_probs=10.7
Q ss_pred eecCCCCCCceEe
Q psy12526 82 AYGQTGEKTNYLL 94 (103)
Q Consensus 82 aYGqtgSGKT~Tm 94 (103)
-.|++|||||..|
T Consensus 35 llGpsGsGKSTLL 47 (359)
T 3fvq_A 35 IIGASGCGKTTLL 47 (359)
T ss_dssp EEESTTSSHHHHH
T ss_pred EECCCCchHHHHH
Confidence 3799999999754
No 311
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=48.51 E-value=3.8 Score=28.55 Aligned_cols=13 Identities=23% Similarity=0.307 Sum_probs=10.4
Q ss_pred eecCCCCCCceEe
Q psy12526 82 AYGQTGEKTNYLL 94 (103)
Q Consensus 82 aYGqtgSGKT~Tm 94 (103)
-.|++|||||..|
T Consensus 46 l~G~NGsGKSTLl 58 (256)
T 1vpl_A 46 LIGPNGAGKTTTL 58 (256)
T ss_dssp EECCTTSSHHHHH
T ss_pred EECCCCCCHHHHH
Confidence 3699999999743
No 312
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=48.34 E-value=2.3 Score=31.76 Aligned_cols=13 Identities=38% Similarity=0.570 Sum_probs=10.7
Q ss_pred eecCCCCCCceEe
Q psy12526 82 AYGQTGEKTNYLL 94 (103)
Q Consensus 82 aYGqtgSGKT~Tm 94 (103)
-.|++|||||.+|
T Consensus 52 llGpsGsGKSTLL 64 (390)
T 3gd7_A 52 LLGRTGSGKSTLL 64 (390)
T ss_dssp EEESTTSSHHHHH
T ss_pred EECCCCChHHHHH
Confidence 3699999999864
No 313
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=48.20 E-value=4.7 Score=25.75 Aligned_cols=14 Identities=29% Similarity=0.451 Sum_probs=11.7
Q ss_pred EEEeecCCCCCCce
Q psy12526 79 CIFAYGQTGEKTNY 92 (103)
Q Consensus 79 ti~aYGqtgSGKT~ 92 (103)
.|.--|..|||||.
T Consensus 11 ~I~l~G~~GsGKsT 24 (196)
T 2c95_A 11 IIFVVGGPGSGKGT 24 (196)
T ss_dssp EEEEEECTTSSHHH
T ss_pred EEEEECCCCCCHHH
Confidence 46668999999986
No 314
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=48.20 E-value=3.9 Score=28.66 Aligned_cols=14 Identities=29% Similarity=0.465 Sum_probs=11.0
Q ss_pred EeecCCCCCCceEe
Q psy12526 81 FAYGQTGEKTNYLL 94 (103)
Q Consensus 81 ~aYGqtgSGKT~Tm 94 (103)
.-.|++|||||..|
T Consensus 34 ~i~G~NGsGKSTLl 47 (263)
T 2pjz_A 34 IILGPNGSGKTTLL 47 (263)
T ss_dssp EEECCTTSSHHHHH
T ss_pred EEECCCCCCHHHHH
Confidence 34699999999743
No 315
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=48.11 E-value=7.3 Score=27.90 Aligned_cols=13 Identities=38% Similarity=0.542 Sum_probs=10.8
Q ss_pred eecCCCCCCceEe
Q psy12526 82 AYGQTGEKTNYLL 94 (103)
Q Consensus 82 aYGqtgSGKT~Tm 94 (103)
-+|++|||||.-|
T Consensus 28 i~G~NGsGKS~ll 40 (339)
T 3qkt_A 28 IIGQNGSGKSSLL 40 (339)
T ss_dssp EECCTTSSHHHHH
T ss_pred EECCCCCCHHHHH
Confidence 5899999998644
No 316
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=48.01 E-value=4 Score=28.36 Aligned_cols=13 Identities=38% Similarity=0.501 Sum_probs=10.5
Q ss_pred eecCCCCCCceEe
Q psy12526 82 AYGQTGEKTNYLL 94 (103)
Q Consensus 82 aYGqtgSGKT~Tm 94 (103)
-.|++|||||..|
T Consensus 36 l~G~nGsGKSTLl 48 (253)
T 2nq2_C 36 VLGQNGCGKSTLL 48 (253)
T ss_dssp EECCSSSSHHHHH
T ss_pred EECCCCCCHHHHH
Confidence 4699999999743
No 317
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=47.88 E-value=10 Score=31.11 Aligned_cols=34 Identities=15% Similarity=0.310 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHH-hhCCCc----EEEEeecCCCCCCce
Q psy12526 59 KVFDALGRDILDN-AFQGYN----ACIFAYGQTGEKTNY 92 (103)
Q Consensus 59 ~v~~~~~~~lv~~-~~~G~n----~ti~aYGqtgSGKT~ 92 (103)
++-+.+..||... ++..+. ..|+-||..|+|||.
T Consensus 215 ~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~ 253 (806)
T 3cf2_A 215 QIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTL 253 (806)
T ss_dssp HHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHH
T ss_pred HHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHH
Confidence 3444443444422 455543 368899999999985
No 318
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=47.79 E-value=4 Score=30.15 Aligned_cols=13 Identities=31% Similarity=0.501 Sum_probs=10.8
Q ss_pred eecCCCCCCceEe
Q psy12526 82 AYGQTGEKTNYLL 94 (103)
Q Consensus 82 aYGqtgSGKT~Tm 94 (103)
-.|++|||||..|
T Consensus 34 llGpnGsGKSTLL 46 (362)
T 2it1_A 34 LLGPSGSGKSTLL 46 (362)
T ss_dssp EECCTTSSHHHHH
T ss_pred EECCCCchHHHHH
Confidence 3699999999854
No 319
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=47.56 E-value=4.1 Score=27.75 Aligned_cols=12 Identities=33% Similarity=0.429 Sum_probs=10.0
Q ss_pred eecCCCCCCceE
Q psy12526 82 AYGQTGEKTNYL 93 (103)
Q Consensus 82 aYGqtgSGKT~T 93 (103)
-.|++|||||..
T Consensus 39 i~G~nGsGKSTL 50 (229)
T 2pze_A 39 VAGSTGAGKTSL 50 (229)
T ss_dssp EECCTTSSHHHH
T ss_pred EECCCCCCHHHH
Confidence 469999999974
No 320
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=47.49 E-value=3.1 Score=33.17 Aligned_cols=19 Identities=11% Similarity=0.230 Sum_probs=15.0
Q ss_pred cEEEEeecCCCCCCceEec
Q psy12526 77 NACIFAYGQTGEKTNYLLN 95 (103)
Q Consensus 77 n~ti~aYGqtgSGKT~Tm~ 95 (103)
+..++..|-.|||||++|.
T Consensus 24 ~g~~lV~AgAGSGKT~vL~ 42 (724)
T 1pjr_A 24 EGPLLIMAGAGSGKTRVLT 42 (724)
T ss_dssp SSCEEEEECTTSCHHHHHH
T ss_pred CCCEEEEEcCCCCHHHHHH
Confidence 3456678899999999875
No 321
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=47.34 E-value=4.1 Score=28.47 Aligned_cols=13 Identities=23% Similarity=0.319 Sum_probs=10.6
Q ss_pred EeecCCCCCCceE
Q psy12526 81 FAYGQTGEKTNYL 93 (103)
Q Consensus 81 ~aYGqtgSGKT~T 93 (103)
.-.|++|||||..
T Consensus 50 ~l~G~NGsGKSTL 62 (267)
T 2zu0_C 50 AIMGPNGSGKSTL 62 (267)
T ss_dssp EEECCTTSSHHHH
T ss_pred EEECCCCCCHHHH
Confidence 3469999999974
No 322
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=47.31 E-value=5.8 Score=28.14 Aligned_cols=14 Identities=21% Similarity=0.358 Sum_probs=10.6
Q ss_pred EeecCCCCCCceEe
Q psy12526 81 FAYGQTGEKTNYLL 94 (103)
Q Consensus 81 ~aYGqtgSGKT~Tm 94 (103)
.--|++|+|||..+
T Consensus 169 ~l~G~sG~GKSTLl 182 (302)
T 2yv5_A 169 ILAGPSGVGKSSIL 182 (302)
T ss_dssp EEECSTTSSHHHHH
T ss_pred EEECCCCCCHHHHH
Confidence 34699999998643
No 323
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=47.31 E-value=4.1 Score=28.77 Aligned_cols=13 Identities=38% Similarity=0.624 Sum_probs=10.5
Q ss_pred eecCCCCCCceEe
Q psy12526 82 AYGQTGEKTNYLL 94 (103)
Q Consensus 82 aYGqtgSGKT~Tm 94 (103)
-.|++|||||..+
T Consensus 52 liG~NGsGKSTLl 64 (279)
T 2ihy_A 52 LYGLNGAGKTTLL 64 (279)
T ss_dssp EECCTTSSHHHHH
T ss_pred EECCCCCcHHHHH
Confidence 4699999999743
No 324
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=47.21 E-value=4.2 Score=28.07 Aligned_cols=12 Identities=25% Similarity=0.393 Sum_probs=10.1
Q ss_pred eecCCCCCCceE
Q psy12526 82 AYGQTGEKTNYL 93 (103)
Q Consensus 82 aYGqtgSGKT~T 93 (103)
-.|++|||||..
T Consensus 34 l~G~nGsGKSTL 45 (250)
T 2d2e_A 34 LMGPNGAGKSTL 45 (250)
T ss_dssp EECSTTSSHHHH
T ss_pred EECCCCCCHHHH
Confidence 469999999974
No 325
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=46.84 E-value=3.1 Score=35.25 Aligned_cols=19 Identities=16% Similarity=0.169 Sum_probs=15.7
Q ss_pred cEEEEeecCCCCCCceEec
Q psy12526 77 NACIFAYGQTGEKTNYLLN 95 (103)
Q Consensus 77 n~ti~aYGqtgSGKT~Tm~ 95 (103)
+..++.-|.-|||||++|.
T Consensus 23 ~~~~~v~a~AGSGKT~vl~ 41 (1232)
T 3u4q_A 23 GQDILVAAAAGSGKTAVLV 41 (1232)
T ss_dssp SSCEEEEECTTCCHHHHHH
T ss_pred CCCEEEEecCCCcHHHHHH
Confidence 4467778999999999975
No 326
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=46.80 E-value=6.1 Score=28.47 Aligned_cols=15 Identities=20% Similarity=0.434 Sum_probs=11.6
Q ss_pred EEEeecCCCCCCceE
Q psy12526 79 CIFAYGQTGEKTNYL 93 (103)
Q Consensus 79 ti~aYGqtgSGKT~T 93 (103)
++.-.|.+|||||.-
T Consensus 128 ~vaIvGpsGsGKSTL 142 (305)
T 2v9p_A 128 CLAFIGPPNTGKSML 142 (305)
T ss_dssp EEEEECSSSSSHHHH
T ss_pred EEEEECCCCCcHHHH
Confidence 344589999999864
No 327
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=46.55 E-value=4.3 Score=30.09 Aligned_cols=13 Identities=23% Similarity=0.273 Sum_probs=10.8
Q ss_pred eecCCCCCCceEe
Q psy12526 82 AYGQTGEKTNYLL 94 (103)
Q Consensus 82 aYGqtgSGKT~Tm 94 (103)
-.|++|||||..|
T Consensus 42 llGpnGsGKSTLL 54 (372)
T 1v43_A 42 LLGPSGCGKTTTL 54 (372)
T ss_dssp EECCTTSSHHHHH
T ss_pred EECCCCChHHHHH
Confidence 3699999999854
No 328
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=46.23 E-value=4.4 Score=28.40 Aligned_cols=13 Identities=15% Similarity=0.230 Sum_probs=10.5
Q ss_pred EeecCCCCCCceE
Q psy12526 81 FAYGQTGEKTNYL 93 (103)
Q Consensus 81 ~aYGqtgSGKT~T 93 (103)
.-.|++|||||..
T Consensus 49 ~i~G~nGsGKSTL 61 (271)
T 2ixe_A 49 ALVGPNGSGKSTV 61 (271)
T ss_dssp EEECSTTSSHHHH
T ss_pred EEECCCCCCHHHH
Confidence 3479999999974
No 329
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=45.97 E-value=4.4 Score=28.10 Aligned_cols=13 Identities=23% Similarity=0.337 Sum_probs=10.5
Q ss_pred EeecCCCCCCceE
Q psy12526 81 FAYGQTGEKTNYL 93 (103)
Q Consensus 81 ~aYGqtgSGKT~T 93 (103)
.-.|.+|||||..
T Consensus 30 ~liG~NGsGKSTL 42 (249)
T 2qi9_C 30 HLVGPNGAGKSTL 42 (249)
T ss_dssp EEECCTTSSHHHH
T ss_pred EEECCCCCcHHHH
Confidence 3469999999974
No 330
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=45.74 E-value=13 Score=26.48 Aligned_cols=35 Identities=14% Similarity=0.120 Sum_probs=22.2
Q ss_pred CCHHHHHHHHHHHHHHHhhCCC-cEEEEeecCCCCCCceE
Q psy12526 55 ASQEKVFDALGRDILDNAFQGY-NACIFAYGQTGEKTNYL 93 (103)
Q Consensus 55 ~~q~~v~~~~~~~lv~~~~~G~-n~ti~aYGqtgSGKT~T 93 (103)
.-|+++++.+. ..+-.|- .-.++-||+.|+|||.+
T Consensus 5 pw~~~~~~~l~----~~i~~~~~~~a~L~~G~~G~GKt~~ 40 (334)
T 1a5t_A 5 PWLRPDFEKLV----ASYQAGRGHHALLIQALPGMGDDAL 40 (334)
T ss_dssp GGGHHHHHHHH----HHHHTTCCCSEEEEECCTTSCHHHH
T ss_pred CchHHHHHHHH----HHHHcCCcceeEEEECCCCchHHHH
Confidence 34556655443 3334443 34578899999999875
No 331
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=45.72 E-value=2.6 Score=35.53 Aligned_cols=15 Identities=7% Similarity=0.271 Sum_probs=12.1
Q ss_pred EeecCCCCCCceEec
Q psy12526 81 FAYGQTGEKTNYLLN 95 (103)
Q Consensus 81 ~aYGqtgSGKT~Tm~ 95 (103)
+.-..-||||||||.
T Consensus 20 lV~AsAGSGKT~~L~ 34 (1180)
T 1w36_B 20 LIEASAGTGKTFTIA 34 (1180)
T ss_dssp EEECCTTSCHHHHHH
T ss_pred EEEECCCCCHHHHHH
Confidence 455678999999985
No 332
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=45.25 E-value=7.7 Score=26.51 Aligned_cols=13 Identities=31% Similarity=0.299 Sum_probs=10.5
Q ss_pred EeecCCCCCCceE
Q psy12526 81 FAYGQTGEKTNYL 93 (103)
Q Consensus 81 ~aYGqtgSGKT~T 93 (103)
.-.|.+|||||..
T Consensus 35 ~i~G~nGsGKSTL 47 (237)
T 2cbz_A 35 AVVGQVGCGKSSL 47 (237)
T ss_dssp EEECSTTSSHHHH
T ss_pred EEECCCCCCHHHH
Confidence 3479999999874
No 333
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=45.08 E-value=6.9 Score=25.39 Aligned_cols=16 Identities=13% Similarity=0.268 Sum_probs=13.0
Q ss_pred cEEEEeecCCCCCCce
Q psy12526 77 NACIFAYGQTGEKTNY 92 (103)
Q Consensus 77 n~ti~aYGqtgSGKT~ 92 (103)
...|+-.|..|||||.
T Consensus 20 ~~~I~l~G~~GsGKST 35 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGT 35 (201)
T ss_dssp CCEEEEECCTTSSHHH
T ss_pred CeEEEEECCCCCCHHH
Confidence 3457778999999986
No 334
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=44.85 E-value=7.1 Score=25.33 Aligned_cols=20 Identities=25% Similarity=0.400 Sum_probs=15.0
Q ss_pred CCcEEEEeecCCCCCCceEe
Q psy12526 75 GYNACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 75 G~n~ti~aYGqtgSGKT~Tm 94 (103)
.....|+-.|..|+|||..+
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~ 29 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLL 29 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 34456778999999998643
No 335
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=44.60 E-value=6.6 Score=25.22 Aligned_cols=25 Identities=12% Similarity=0.171 Sum_probs=17.7
Q ss_pred HHHhhCCCcEEEEeecCCCCCCceE
Q psy12526 69 LDNAFQGYNACIFAYGQTGEKTNYL 93 (103)
Q Consensus 69 v~~~~~G~n~ti~aYGqtgSGKT~T 93 (103)
+..++.-...-|.-.|..|+|||.-
T Consensus 21 ~~~~~~~~~~ki~v~G~~~vGKSsL 45 (192)
T 2b6h_A 21 FSRIFGKKQMRILMVGLDAAGKTTI 45 (192)
T ss_dssp GGGTTTTSCEEEEEEESTTSSHHHH
T ss_pred HHHhccCCccEEEEECCCCCCHHHH
Confidence 3444444556788899999999863
No 336
>2olr_A Phosphoenolpyruvate carboxykinase; carbon dioxide, lyase; HET: ATP; 1.60A {Escherichia coli K12} SCOP: c.91.1.1 c.109.1.1 PDB: 1k3c_A* 1k3d_A* 1aq2_A* 2olq_A* 1os1_A* 2pxz_X* 1ayl_A* 2py7_X* 1oen_A 1ylh_A* 1ygg_A*
Probab=44.59 E-value=6.9 Score=30.74 Aligned_cols=15 Identities=20% Similarity=0.372 Sum_probs=12.4
Q ss_pred EEEeecCCCCCCceE
Q psy12526 79 CIFAYGQTGEKTNYL 93 (103)
Q Consensus 79 ti~aYGqtgSGKT~T 93 (103)
+++-+|.+|+|||.+
T Consensus 243 ~~lffGlSGtGKTTL 257 (540)
T 2olr_A 243 VAVFFGLSGTGKTTL 257 (540)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEEccCCCCHHHH
Confidence 566789999999974
No 337
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=44.49 E-value=5.9 Score=25.84 Aligned_cols=15 Identities=27% Similarity=0.109 Sum_probs=11.5
Q ss_pred EEEeecCCCCCCceE
Q psy12526 79 CIFAYGQTGEKTNYL 93 (103)
Q Consensus 79 ti~aYGqtgSGKT~T 93 (103)
.|.--|.+|||||..
T Consensus 23 ~i~i~G~~GsGKSTl 37 (207)
T 2qt1_A 23 IIGISGVTNSGKTTL 37 (207)
T ss_dssp EEEEEESTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 345579999999863
No 338
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=43.22 E-value=3.3 Score=30.77 Aligned_cols=12 Identities=25% Similarity=0.443 Sum_probs=10.0
Q ss_pred eecCCCCCCceE
Q psy12526 82 AYGQTGEKTNYL 93 (103)
Q Consensus 82 aYGqtgSGKT~T 93 (103)
-.|++|||||..
T Consensus 59 IiGpnGaGKSTL 70 (366)
T 3tui_C 59 VIGASGAGKSTL 70 (366)
T ss_dssp EECCTTSSHHHH
T ss_pred EEcCCCchHHHH
Confidence 369999999974
No 339
>1ii2_A Phosphoenolpyruvate carboxykinase; phosphate binding loop, lyase; 2.00A {Trypanosoma cruzi} SCOP: c.91.1.1 c.109.1.1
Probab=43.19 E-value=7.4 Score=30.41 Aligned_cols=15 Identities=20% Similarity=0.377 Sum_probs=12.6
Q ss_pred EEEeecCCCCCCceE
Q psy12526 79 CIFAYGQTGEKTNYL 93 (103)
Q Consensus 79 ti~aYGqtgSGKT~T 93 (103)
+++-+|.+|+|||.+
T Consensus 215 ~~~ffGlSGtGKTTL 229 (524)
T 1ii2_A 215 VTVFFGLSGTGKTTL 229 (524)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEEccCCcchhhh
Confidence 567789999999965
No 340
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=43.10 E-value=14 Score=26.25 Aligned_cols=26 Identities=15% Similarity=0.197 Sum_probs=18.3
Q ss_pred HHHHHhhCCC--cEEEEeecCCCCCCce
Q psy12526 67 DILDNAFQGY--NACIFAYGQTGEKTNY 92 (103)
Q Consensus 67 ~lv~~~~~G~--n~ti~aYGqtgSGKT~ 92 (103)
+-++.++.|+ ...++-.|.+|+|||.
T Consensus 56 ~~LD~~lgGl~~G~l~li~G~pG~GKTt 83 (315)
T 3bh0_A 56 TELDRMTYGYKRRNFVLIAARPSMGKTA 83 (315)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSSHHH
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCCHHH
Confidence 3456666555 2356778999999985
No 341
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=42.99 E-value=6.5 Score=32.53 Aligned_cols=25 Identities=4% Similarity=-0.055 Sum_probs=16.4
Q ss_pred HHhhCCCcEEEEeecCCCCCCceEe
Q psy12526 70 DNAFQGYNACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 70 ~~~~~G~n~ti~aYGqtgSGKT~Tm 94 (103)
..++...+.-++-.+.||+|||.++
T Consensus 163 ~~~l~~~~~~~LLad~tGlGKTi~A 187 (968)
T 3dmq_A 163 HDVGRRHAPRVLLADEVGLGKTIEA 187 (968)
T ss_dssp HHHHHSSSCEEEECCCTTSCHHHHH
T ss_pred HHHHHhcCCCEEEECCCCCcHHHHH
Confidence 3444443444556789999999865
No 342
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=42.96 E-value=18 Score=26.08 Aligned_cols=30 Identities=13% Similarity=0.153 Sum_probs=19.7
Q ss_pred HHHHHHHhh--CCCcEEEEeecCCCCCCceEe
Q psy12526 65 GRDILDNAF--QGYNACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 65 ~~~lv~~~~--~G~n~ti~aYGqtgSGKT~Tm 94 (103)
...++..+. .+-.-.|.--|..|+|||..+
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~ 96 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAI 96 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHH
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHH
Confidence 344555554 344456667899999999754
No 343
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=42.53 E-value=13 Score=27.24 Aligned_cols=28 Identities=25% Similarity=0.266 Sum_probs=18.7
Q ss_pred HHHHHhhC--CC--cEEEEeecCCCCCCceEe
Q psy12526 67 DILDNAFQ--GY--NACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 67 ~lv~~~~~--G~--n~ti~aYGqtgSGKT~Tm 94 (103)
+-++.++. |+ ...++-+|..|+|||..+
T Consensus 49 ~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLa 80 (356)
T 1u94_A 49 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLT 80 (356)
T ss_dssp HHHHHHTSSSSEETTSEEEEECSTTSSHHHHH
T ss_pred HHHHHHhccCCccCCeEEEEECCCCCCHHHHH
Confidence 34566664 33 335677899999999743
No 344
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=42.30 E-value=9.7 Score=28.02 Aligned_cols=27 Identities=26% Similarity=0.223 Sum_probs=18.0
Q ss_pred HHHHHhhC--CC--cEEEEeecCCCCCCceE
Q psy12526 67 DILDNAFQ--GY--NACIFAYGQTGEKTNYL 93 (103)
Q Consensus 67 ~lv~~~~~--G~--n~ti~aYGqtgSGKT~T 93 (103)
+-++.++. |+ ...+.-||..|+|||..
T Consensus 60 ~~LD~~Lg~GGl~~G~li~I~G~pGsGKTtl 90 (366)
T 1xp8_A 60 LSLDLALGVGGIPRGRITEIYGPESGGKTTL 90 (366)
T ss_dssp HHHHHHTSSSSEETTSEEEEEESTTSSHHHH
T ss_pred HHHHHHhCCCCccCCcEEEEEcCCCCChHHH
Confidence 44566665 43 23455599999999964
No 345
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=42.25 E-value=11 Score=27.25 Aligned_cols=16 Identities=13% Similarity=-0.108 Sum_probs=12.2
Q ss_pred EEEeecCCCCCCceEe
Q psy12526 79 CIFAYGQTGEKTNYLL 94 (103)
Q Consensus 79 ti~aYGqtgSGKT~Tm 94 (103)
.|---|.+|||||.++
T Consensus 94 iigI~GpsGSGKSTl~ 109 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTS 109 (321)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3445599999999764
No 346
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=41.95 E-value=9.6 Score=25.00 Aligned_cols=16 Identities=19% Similarity=0.252 Sum_probs=12.3
Q ss_pred EEEEeecCCCCCCceE
Q psy12526 78 ACIFAYGQTGEKTNYL 93 (103)
Q Consensus 78 ~ti~aYGqtgSGKT~T 93 (103)
..|.--|..|||||..
T Consensus 26 ~~i~~~G~~GsGKsT~ 41 (211)
T 1m7g_A 26 LTIWLTGLSASGKSTL 41 (211)
T ss_dssp EEEEEECSTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 3455679999999863
No 347
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=41.72 E-value=22 Score=27.16 Aligned_cols=34 Identities=9% Similarity=0.074 Sum_probs=21.5
Q ss_pred CCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceE
Q psy12526 54 FASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYL 93 (103)
Q Consensus 54 ~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~T 93 (103)
..-|.++-..+ ...+.+|.++ +.-.+||+|||.+
T Consensus 9 r~~Q~~~~~~v----~~~~~~~~~~--~~~a~TGtGKT~~ 42 (540)
T 2vl7_A 9 RQWQAEKLGEA----INALKHGKTL--LLNAKPGLGKTVF 42 (540)
T ss_dssp CCHHHHHHHHH----HHHHHTTCEE--EEECCTTSCHHHH
T ss_pred CHHHHHHHHHH----HHHHHcCCCE--EEEcCCCCcHHHH
Confidence 45666555443 3455677654 4566899999964
No 348
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=41.51 E-value=19 Score=27.46 Aligned_cols=33 Identities=18% Similarity=0.249 Sum_probs=20.9
Q ss_pred CCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceE
Q psy12526 55 ASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYL 93 (103)
Q Consensus 55 ~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~T 93 (103)
..|.++-+.+ .+.+.+|.+ +++-.+||+|||.+
T Consensus 6 ~~Q~~~~~~v----~~~l~~~~~--~~~~a~TGtGKT~~ 38 (551)
T 3crv_A 6 DWQEKLKDKV----IEGLRNNFL--VALNAPTGSGKTLF 38 (551)
T ss_dssp HHHHHHHHHH----HHHHHTTCE--EEEECCTTSSHHHH
T ss_pred HHHHHHHHHH----HHHHHcCCc--EEEECCCCccHHHH
Confidence 4565544443 355567765 44567899999864
No 349
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=41.41 E-value=7.7 Score=24.52 Aligned_cols=17 Identities=12% Similarity=0.129 Sum_probs=13.0
Q ss_pred EEEEeecCCCCCCceEe
Q psy12526 78 ACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 78 ~ti~aYGqtgSGKT~Tm 94 (103)
..|.-.|.+|+|||..+
T Consensus 24 ~~i~v~G~~~~GKSsli 40 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFI 40 (195)
T ss_dssp CEEEEEEBTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 34667899999998643
No 350
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=41.21 E-value=16 Score=23.03 Aligned_cols=18 Identities=17% Similarity=0.167 Sum_probs=14.2
Q ss_pred CcEEEEeecCCCCCCceE
Q psy12526 76 YNACIFAYGQTGEKTNYL 93 (103)
Q Consensus 76 ~n~ti~aYGqtgSGKT~T 93 (103)
...-|.-.|..|+|||.-
T Consensus 15 ~~~ki~ivG~~~vGKSsL 32 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTL 32 (181)
T ss_dssp SCEEEEEEESTTSSHHHH
T ss_pred CceEEEEECCCCCCHHHH
Confidence 455677899999999853
No 351
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=41.11 E-value=9 Score=23.58 Aligned_cols=16 Identities=19% Similarity=0.183 Sum_probs=13.0
Q ss_pred EEEEeecCCCCCCceE
Q psy12526 78 ACIFAYGQTGEKTNYL 93 (103)
Q Consensus 78 ~ti~aYGqtgSGKT~T 93 (103)
..|.-.|..|+|||.-
T Consensus 16 ~~i~v~G~~~~GKSsl 31 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCL 31 (179)
T ss_dssp EEEEEECSTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4577789999999863
No 352
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=40.93 E-value=3.4 Score=30.31 Aligned_cols=13 Identities=31% Similarity=0.519 Sum_probs=10.8
Q ss_pred eecCCCCCCceEe
Q psy12526 82 AYGQTGEKTNYLL 94 (103)
Q Consensus 82 aYGqtgSGKT~Tm 94 (103)
-.|++|||||..|
T Consensus 31 llGpnGsGKSTLL 43 (348)
T 3d31_A 31 ILGPTGAGKTLFL 43 (348)
T ss_dssp EECCCTHHHHHHH
T ss_pred EECCCCccHHHHH
Confidence 4699999999854
No 353
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=40.92 E-value=9 Score=24.12 Aligned_cols=15 Identities=20% Similarity=0.242 Sum_probs=12.3
Q ss_pred EEEeecCCCCCCceE
Q psy12526 79 CIFAYGQTGEKTNYL 93 (103)
Q Consensus 79 ti~aYGqtgSGKT~T 93 (103)
.|...|..|+|||..
T Consensus 23 ki~vvG~~~~GKSsl 37 (190)
T 3con_A 23 KLVVVGAGGVGKSAL 37 (190)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECcCCCCHHHH
Confidence 566789999999864
No 354
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=40.91 E-value=9 Score=26.51 Aligned_cols=16 Identities=13% Similarity=0.233 Sum_probs=12.7
Q ss_pred EEEeecCCCCCCceEe
Q psy12526 79 CIFAYGQTGEKTNYLL 94 (103)
Q Consensus 79 ti~aYGqtgSGKT~Tm 94 (103)
.+.-.|.+|+|||..+
T Consensus 37 ~~~i~G~~G~GKTTl~ 52 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFV 52 (296)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEEeCCCCCHHHHH
Confidence 4556899999999754
No 355
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=40.84 E-value=8 Score=24.27 Aligned_cols=16 Identities=19% Similarity=0.179 Sum_probs=12.7
Q ss_pred EEEeecCCCCCCceEe
Q psy12526 79 CIFAYGQTGEKTNYLL 94 (103)
Q Consensus 79 ti~aYGqtgSGKT~Tm 94 (103)
.|.-.|.+|+|||..+
T Consensus 25 ~i~v~G~~~~GKSsli 40 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLL 40 (195)
T ss_dssp EEEEEEBTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4667899999998643
No 356
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=40.68 E-value=13 Score=27.83 Aligned_cols=15 Identities=20% Similarity=0.432 Sum_probs=11.6
Q ss_pred EEeecCCCCCCceEe
Q psy12526 80 IFAYGQTGEKTNYLL 94 (103)
Q Consensus 80 i~aYGqtgSGKT~Tm 94 (103)
+---|.+|+|||..|
T Consensus 72 valvG~nGaGKSTLl 86 (413)
T 1tq4_A 72 VAVTGETGSGKSSFI 86 (413)
T ss_dssp EEEEECTTSSHHHHH
T ss_pred EEEECCCCCcHHHHH
Confidence 334699999999863
No 357
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=40.67 E-value=15 Score=27.42 Aligned_cols=27 Identities=15% Similarity=0.214 Sum_probs=18.4
Q ss_pred HHHHHhhCCC--cEEEEeecCCCCCCceE
Q psy12526 67 DILDNAFQGY--NACIFAYGQTGEKTNYL 93 (103)
Q Consensus 67 ~lv~~~~~G~--n~ti~aYGqtgSGKT~T 93 (103)
+.++.++.|+ ...+.-.|.+|+|||.-
T Consensus 191 ~~LD~~~gGl~~G~liiI~G~pG~GKTtl 219 (454)
T 2r6a_A 191 TELDRMTSGFQRSDLIIVAARPSVGKTAF 219 (454)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSCHHHH
T ss_pred HHHHhhcCCCCCCCEEEEECCCCCCHHHH
Confidence 3455555555 23567789999999864
No 358
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=40.63 E-value=5.6 Score=28.27 Aligned_cols=23 Identities=30% Similarity=0.332 Sum_probs=15.1
Q ss_pred hhCCCcEEE------EeecCCCCCCceEe
Q psy12526 72 AFQGYNACI------FAYGQTGEKTNYLL 94 (103)
Q Consensus 72 ~~~G~n~ti------~aYGqtgSGKT~Tm 94 (103)
++++.|.+| .-.|++|||||..|
T Consensus 53 vl~~isl~i~~Ge~~~i~G~NGsGKSTLl 81 (290)
T 2bbs_A 53 VLKDINFKIERGQLLAVAGSTGAGKTSLL 81 (290)
T ss_dssp SEEEEEEEECTTCEEEEEESTTSSHHHHH
T ss_pred EEEeeEEEEcCCCEEEEECCCCCcHHHHH
Confidence 455555443 34599999999743
No 359
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=40.58 E-value=8.5 Score=23.69 Aligned_cols=15 Identities=13% Similarity=0.140 Sum_probs=12.0
Q ss_pred EEEeecCCCCCCceE
Q psy12526 79 CIFAYGQTGEKTNYL 93 (103)
Q Consensus 79 ti~aYGqtgSGKT~T 93 (103)
-|.-.|..|+|||.-
T Consensus 16 ~i~v~G~~~~GKssl 30 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSL 30 (179)
T ss_dssp EEEEEESTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 456679999999863
No 360
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=40.53 E-value=2.1 Score=29.54 Aligned_cols=12 Identities=17% Similarity=0.288 Sum_probs=10.0
Q ss_pred ecCCCCCCceEe
Q psy12526 83 YGQTGEKTNYLL 94 (103)
Q Consensus 83 YGqtgSGKT~Tm 94 (103)
.|++|||||..|
T Consensus 33 ~GpnGsGKSTll 44 (227)
T 1qhl_A 33 SGGNGAGKSTTM 44 (227)
T ss_dssp HSCCSHHHHHHH
T ss_pred ECCCCCCHHHHH
Confidence 599999998754
No 361
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=40.35 E-value=10 Score=29.58 Aligned_cols=15 Identities=20% Similarity=0.423 Sum_probs=12.6
Q ss_pred EEEeecCCCCCCceE
Q psy12526 79 CIFAYGQTGEKTNYL 93 (103)
Q Consensus 79 ti~aYGqtgSGKT~T 93 (103)
-|+-+|.+|+|||..
T Consensus 329 ~vLL~GppGtGKT~L 343 (595)
T 3f9v_A 329 HILIIGDPGTAKSQM 343 (595)
T ss_dssp CEEEEESSCCTHHHH
T ss_pred ceEEECCCchHHHHH
Confidence 467799999999864
No 362
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=40.26 E-value=9.2 Score=23.57 Aligned_cols=15 Identities=20% Similarity=0.361 Sum_probs=12.3
Q ss_pred EEEeecCCCCCCceE
Q psy12526 79 CIFAYGQTGEKTNYL 93 (103)
Q Consensus 79 ti~aYGqtgSGKT~T 93 (103)
-|.-.|..|+|||.-
T Consensus 11 ~i~v~G~~~~GKssl 25 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSL 25 (181)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 466789999999863
No 363
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=40.02 E-value=9.5 Score=23.64 Aligned_cols=16 Identities=19% Similarity=0.227 Sum_probs=12.7
Q ss_pred EEEEeecCCCCCCceE
Q psy12526 78 ACIFAYGQTGEKTNYL 93 (103)
Q Consensus 78 ~ti~aYGqtgSGKT~T 93 (103)
.-|...|..|+|||.-
T Consensus 19 ~ki~v~G~~~~GKSsl 34 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSAL 34 (187)
T ss_dssp EEEEEECSTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 3467789999999863
No 364
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=39.90 E-value=16 Score=27.19 Aligned_cols=27 Identities=7% Similarity=0.003 Sum_probs=19.2
Q ss_pred HHHHHhhCCCc--EEEEeecCCCCCCceE
Q psy12526 67 DILDNAFQGYN--ACIFAYGQTGEKTNYL 93 (103)
Q Consensus 67 ~lv~~~~~G~n--~ti~aYGqtgSGKT~T 93 (103)
+-++.++.|+. ..++-+|.+|+|||.-
T Consensus 188 ~~LD~~lgGl~~G~l~ii~G~pg~GKT~l 216 (444)
T 2q6t_A 188 KELDQLIGTLGPGSLNIIAARPAMGKTAF 216 (444)
T ss_dssp HHHHHHHCCCCTTCEEEEEECTTSCHHHH
T ss_pred HhhhhhcCCcCCCcEEEEEeCCCCCHHHH
Confidence 44566666653 3567789999999863
No 365
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=39.83 E-value=17 Score=23.34 Aligned_cols=18 Identities=11% Similarity=0.071 Sum_probs=13.9
Q ss_pred CcEEEEeecCCCCCCceE
Q psy12526 76 YNACIFAYGQTGEKTNYL 93 (103)
Q Consensus 76 ~n~ti~aYGqtgSGKT~T 93 (103)
...-|.-.|..|+|||.-
T Consensus 24 ~~~ki~lvG~~~vGKSsL 41 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTL 41 (198)
T ss_dssp CCEEEEEEEETTSSHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 345677789999999864
No 366
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=39.74 E-value=16 Score=26.00 Aligned_cols=25 Identities=8% Similarity=-0.073 Sum_probs=17.4
Q ss_pred HHHhhCCCcEEEEeecCCCCCCceE
Q psy12526 69 LDNAFQGYNACIFAYGQTGEKTNYL 93 (103)
Q Consensus 69 v~~~~~G~n~ti~aYGqtgSGKT~T 93 (103)
...+-+|-.-.++-||+.|+|||.+
T Consensus 10 ~~~i~~~~~~~~Lf~Gp~G~GKtt~ 34 (305)
T 2gno_A 10 KRIIEKSEGISILINGEDLSYPREV 34 (305)
T ss_dssp HHHHHTCSSEEEEEECSSSSHHHHH
T ss_pred HHHHHCCCCcEEEEECCCCCCHHHH
Confidence 3344455544677899999999864
No 367
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=39.57 E-value=11 Score=24.50 Aligned_cols=16 Identities=19% Similarity=0.385 Sum_probs=11.9
Q ss_pred EEEeecCCCCCCceEe
Q psy12526 79 CIFAYGQTGEKTNYLL 94 (103)
Q Consensus 79 ti~aYGqtgSGKT~Tm 94 (103)
.|.--|..|+|||..+
T Consensus 32 ~i~i~G~~g~GKTTl~ 47 (221)
T 2wsm_A 32 AVNIMGAIGSGKTLLI 47 (221)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 4445699999999643
No 368
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=39.26 E-value=8.6 Score=26.20 Aligned_cols=14 Identities=29% Similarity=0.503 Sum_probs=11.7
Q ss_pred EEEeecCCCCCCce
Q psy12526 79 CIFAYGQTGEKTNY 92 (103)
Q Consensus 79 ti~aYGqtgSGKT~ 92 (103)
.|+-.|..||||+.
T Consensus 31 iI~llGpPGsGKgT 44 (217)
T 3umf_A 31 VIFVLGGPGSGKGT 44 (217)
T ss_dssp EEEEECCTTCCHHH
T ss_pred EEEEECCCCCCHHH
Confidence 57788999999964
No 369
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=39.19 E-value=6.6 Score=27.82 Aligned_cols=16 Identities=19% Similarity=0.175 Sum_probs=11.9
Q ss_pred EEEeecCCCCCCceEe
Q psy12526 79 CIFAYGQTGEKTNYLL 94 (103)
Q Consensus 79 ti~aYGqtgSGKT~Tm 94 (103)
.|.-.|.+|+|||.++
T Consensus 100 ~i~i~g~~G~GKTT~~ 115 (295)
T 1ls1_A 100 LWFLVGLQGSGKTTTA 115 (295)
T ss_dssp EEEEECCTTTTHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3444499999999764
No 370
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=38.77 E-value=10 Score=24.09 Aligned_cols=16 Identities=19% Similarity=0.227 Sum_probs=12.7
Q ss_pred EEEEeecCCCCCCceE
Q psy12526 78 ACIFAYGQTGEKTNYL 93 (103)
Q Consensus 78 ~ti~aYGqtgSGKT~T 93 (103)
.-|.-.|..|+|||.-
T Consensus 15 ~ki~v~G~~~~GKSsl 30 (206)
T 2bov_A 15 HKVIMVGSGGVGKSAL 30 (206)
T ss_dssp EEEEEECSTTSSHHHH
T ss_pred EEEEEECCCCCCHHHH
Confidence 3466789999999863
No 371
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=38.72 E-value=9.4 Score=23.82 Aligned_cols=16 Identities=19% Similarity=0.316 Sum_probs=12.8
Q ss_pred EEEEeecCCCCCCceE
Q psy12526 78 ACIFAYGQTGEKTNYL 93 (103)
Q Consensus 78 ~ti~aYGqtgSGKT~T 93 (103)
.-|.-.|..|+|||.-
T Consensus 11 ~ki~v~G~~~~GKSsl 26 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCL 26 (186)
T ss_dssp EEEEEEESTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 3567789999999863
No 372
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=38.68 E-value=6.1 Score=26.45 Aligned_cols=18 Identities=22% Similarity=0.156 Sum_probs=14.0
Q ss_pred cEEEEeecCCCCCCceEe
Q psy12526 77 NACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 77 n~ti~aYGqtgSGKT~Tm 94 (103)
.-.|.-.|.+|+|||..+
T Consensus 29 ~~~i~lvG~~g~GKStli 46 (239)
T 3lxx_A 29 QLRIVLVGKTGAGKSATG 46 (239)
T ss_dssp EEEEEEECCTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 446777999999998643
No 373
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=38.67 E-value=9.4 Score=23.54 Aligned_cols=17 Identities=18% Similarity=0.157 Sum_probs=13.2
Q ss_pred EEEEeecCCCCCCceEe
Q psy12526 78 ACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 78 ~ti~aYGqtgSGKT~Tm 94 (103)
..|.-.|..|+|||.-+
T Consensus 10 ~~i~v~G~~~~GKssli 26 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALT 26 (181)
T ss_dssp EEEEEEECTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35667899999998743
No 374
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=38.50 E-value=10 Score=23.48 Aligned_cols=17 Identities=29% Similarity=0.417 Sum_probs=13.6
Q ss_pred cEEEEeecCCCCCCceE
Q psy12526 77 NACIFAYGQTGEKTNYL 93 (103)
Q Consensus 77 n~ti~aYGqtgSGKT~T 93 (103)
...|.-.|..|+|||.-
T Consensus 12 ~~ki~v~G~~~~GKSsl 28 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSL 28 (181)
T ss_dssp EEEEEEECCTTSCHHHH
T ss_pred ceEEEEECcCCCCHHHH
Confidence 35677889999999863
No 375
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=38.45 E-value=5.6 Score=26.94 Aligned_cols=18 Identities=22% Similarity=0.176 Sum_probs=14.0
Q ss_pred cEEEEeecCCCCCCceEe
Q psy12526 77 NACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 77 n~ti~aYGqtgSGKT~Tm 94 (103)
...|.-.|.+|+|||.++
T Consensus 22 ~~~I~lvG~~g~GKStl~ 39 (260)
T 2xtp_A 22 ELRIILVGKTGTGKSAAG 39 (260)
T ss_dssp CEEEEEEECTTSCHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 345777899999999753
No 376
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=38.10 E-value=12 Score=25.24 Aligned_cols=14 Identities=14% Similarity=0.330 Sum_probs=10.8
Q ss_pred EEeecCCCCCCceE
Q psy12526 80 IFAYGQTGEKTNYL 93 (103)
Q Consensus 80 i~aYGqtgSGKT~T 93 (103)
|.-.|++|+|||..
T Consensus 22 ivl~GPSGaGKsTL 35 (197)
T 3ney_A 22 LVLIGASGVGRSHI 35 (197)
T ss_dssp EEEECCTTSSHHHH
T ss_pred EEEECcCCCCHHHH
Confidence 33479999999864
No 377
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=38.07 E-value=6.5 Score=29.98 Aligned_cols=16 Identities=13% Similarity=0.287 Sum_probs=12.5
Q ss_pred EEEeecCCCCCCceEe
Q psy12526 79 CIFAYGQTGEKTNYLL 94 (103)
Q Consensus 79 ti~aYGqtgSGKT~Tm 94 (103)
++.-.|.+|||||..+
T Consensus 41 ~~~l~G~nGsGKSTL~ 56 (525)
T 1tf7_A 41 STLVSGTSGTGKTLFS 56 (525)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 4556899999999754
No 378
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=38.02 E-value=11 Score=23.54 Aligned_cols=17 Identities=18% Similarity=0.202 Sum_probs=13.3
Q ss_pred cEEEEeecCCCCCCceE
Q psy12526 77 NACIFAYGQTGEKTNYL 93 (103)
Q Consensus 77 n~ti~aYGqtgSGKT~T 93 (103)
..-|.-.|..|+|||.-
T Consensus 18 ~~ki~v~G~~~~GKSsl 34 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSAL 34 (183)
T ss_dssp EEEEEEECSTTSSHHHH
T ss_pred ceEEEEECCCCCCHHHH
Confidence 34567799999999863
No 379
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=37.50 E-value=15 Score=23.30 Aligned_cols=18 Identities=17% Similarity=0.296 Sum_probs=14.1
Q ss_pred CcEEEEeecCCCCCCceE
Q psy12526 76 YNACIFAYGQTGEKTNYL 93 (103)
Q Consensus 76 ~n~ti~aYGqtgSGKT~T 93 (103)
...-|.-.|..|+|||.-
T Consensus 27 ~~~ki~v~G~~~vGKSsl 44 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSAL 44 (196)
T ss_dssp CCEEEEEECCTTSSHHHH
T ss_pred CceEEEEECCCCCCHHHH
Confidence 345677899999999863
No 380
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=37.38 E-value=11 Score=24.14 Aligned_cols=16 Identities=13% Similarity=0.088 Sum_probs=12.1
Q ss_pred EEEeecCCCCCCceEe
Q psy12526 79 CIFAYGQTGEKTNYLL 94 (103)
Q Consensus 79 ti~aYGqtgSGKT~Tm 94 (103)
.|.-.|.+|+|||..+
T Consensus 28 ~v~lvG~~g~GKSTLl 43 (210)
T 1pui_A 28 EVAFAGRSNAGKSSAL 43 (210)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3455899999998743
No 381
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=37.33 E-value=5.6 Score=32.29 Aligned_cols=16 Identities=25% Similarity=0.455 Sum_probs=13.2
Q ss_pred EEEEeecCCCCCCceE
Q psy12526 78 ACIFAYGQTGEKTNYL 93 (103)
Q Consensus 78 ~ti~aYGqtgSGKT~T 93 (103)
..++-||.+|+|||+.
T Consensus 512 ~~vLL~GppGtGKT~L 527 (806)
T 1ypw_A 512 KGVLFYGPPGCGKTLL 527 (806)
T ss_dssp CCCCCBCCTTSSHHHH
T ss_pred ceeEEECCCCCCHHHH
Confidence 3467899999999974
No 382
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=37.32 E-value=10 Score=28.07 Aligned_cols=17 Identities=18% Similarity=0.282 Sum_probs=13.5
Q ss_pred cEEEEeecCCCCCCceE
Q psy12526 77 NACIFAYGQTGEKTNYL 93 (103)
Q Consensus 77 n~ti~aYGqtgSGKT~T 93 (103)
...|+-.|..|||||+.
T Consensus 258 ~~lIil~G~pGSGKSTl 274 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTF 274 (416)
T ss_dssp CCEEEEESCTTSSHHHH
T ss_pred CEEEEEECCCCCCHHHH
Confidence 45677789999999863
No 383
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=37.08 E-value=7.6 Score=26.04 Aligned_cols=14 Identities=14% Similarity=0.304 Sum_probs=10.7
Q ss_pred EEeecCCCCCCceE
Q psy12526 80 IFAYGQTGEKTNYL 93 (103)
Q Consensus 80 i~aYGqtgSGKT~T 93 (103)
|---|..|||||..
T Consensus 23 i~i~G~~GsGKSTl 36 (230)
T 2vp4_A 23 VLIEGNIGSGKTTY 36 (230)
T ss_dssp EEEECSTTSCHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 33459999999864
No 384
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=37.00 E-value=9.7 Score=25.85 Aligned_cols=33 Identities=12% Similarity=0.095 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCce
Q psy12526 58 EKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNY 92 (103)
Q Consensus 58 ~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~ 92 (103)
.+........+.... .-...|+-.|..|||||.
T Consensus 12 ~~~~~~~~~~~~~~~--~~~~~I~l~G~~GsGKsT 44 (243)
T 3tlx_A 12 IDLLNELKRRYACLS--KPDGRYIFLGAPGSGKGT 44 (243)
T ss_dssp HHHHHHHHHHHHHHT--SCCEEEEEECCTTSSHHH
T ss_pred HHHHHHHHHHHHhcc--CCCcEEEEECCCCCCHHH
Confidence 345555554443322 223457778999999985
No 385
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=36.94 E-value=9.1 Score=24.73 Aligned_cols=14 Identities=14% Similarity=0.014 Sum_probs=11.7
Q ss_pred EEEeecCCCCCCce
Q psy12526 79 CIFAYGQTGEKTNY 92 (103)
Q Consensus 79 ti~aYGqtgSGKT~ 92 (103)
.|.--|..|||||.
T Consensus 12 ~I~l~G~~GsGKST 25 (212)
T 2wwf_A 12 FIVFEGLDRSGKST 25 (212)
T ss_dssp EEEEEESTTSSHHH
T ss_pred EEEEEcCCCCCHHH
Confidence 46668999999986
No 386
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=36.93 E-value=5.8 Score=27.31 Aligned_cols=18 Identities=11% Similarity=-0.167 Sum_probs=13.9
Q ss_pred EEEeecCCCCCCceEecc
Q psy12526 79 CIFAYGQTGEKTNYLLNG 96 (103)
Q Consensus 79 ti~aYGqtgSGKT~Tm~G 96 (103)
..+-||..|||||..+++
T Consensus 30 l~vitG~MgsGKTT~lL~ 47 (214)
T 2j9r_A 30 IEVICGSMFSGKSEELIR 47 (214)
T ss_dssp EEEEECSTTSCHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHH
Confidence 456789999999976553
No 387
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=36.63 E-value=34 Score=26.34 Aligned_cols=16 Identities=19% Similarity=0.185 Sum_probs=12.4
Q ss_pred EEEeecCCCCCCceEe
Q psy12526 79 CIFAYGQTGEKTNYLL 94 (103)
Q Consensus 79 ti~aYGqtgSGKT~Tm 94 (103)
.|.-.|..|+|||.+.
T Consensus 103 vI~ivG~~GvGKTTl~ 118 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTC 118 (504)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4555599999999865
No 388
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=36.58 E-value=10 Score=27.93 Aligned_cols=14 Identities=29% Similarity=0.292 Sum_probs=10.9
Q ss_pred EEeecCCCCCCceE
Q psy12526 80 IFAYGQTGEKTNYL 93 (103)
Q Consensus 80 i~aYGqtgSGKT~T 93 (103)
+.-.|++|+|||..
T Consensus 218 ~~lvG~sG~GKSTL 231 (358)
T 2rcn_A 218 SIFAGQSGVGKSSL 231 (358)
T ss_dssp EEEECCTTSSHHHH
T ss_pred EEEECCCCccHHHH
Confidence 34479999999964
No 389
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=36.26 E-value=12 Score=23.30 Aligned_cols=16 Identities=19% Similarity=0.312 Sum_probs=13.0
Q ss_pred EEEEeecCCCCCCceE
Q psy12526 78 ACIFAYGQTGEKTNYL 93 (103)
Q Consensus 78 ~ti~aYGqtgSGKT~T 93 (103)
..|.-.|..|+|||.-
T Consensus 12 ~ki~v~G~~~~GKSsl 27 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSV 27 (195)
T ss_dssp EEEEEECSTTSSHHHH
T ss_pred EEEEEECCCCCCHHHH
Confidence 4567789999999863
No 390
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=36.16 E-value=5 Score=31.08 Aligned_cols=12 Identities=25% Similarity=0.465 Sum_probs=10.3
Q ss_pred ecCCCCCCceEe
Q psy12526 83 YGQTGEKTNYLL 94 (103)
Q Consensus 83 YGqtgSGKT~Tm 94 (103)
.|++|||||..|
T Consensus 31 iGpNGaGKSTLl 42 (538)
T 3ozx_A 31 LGKNGVGKTTVL 42 (538)
T ss_dssp ECCTTSSHHHHH
T ss_pred ECCCCCcHHHHH
Confidence 699999999754
No 391
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=35.97 E-value=8 Score=27.30 Aligned_cols=15 Identities=27% Similarity=0.231 Sum_probs=11.3
Q ss_pred EEeecCCCCCCceEe
Q psy12526 80 IFAYGQTGEKTNYLL 94 (103)
Q Consensus 80 i~aYGqtgSGKT~Tm 94 (103)
+.-.|++|+|||..+
T Consensus 172 v~l~G~sG~GKSTll 186 (301)
T 1u0l_A 172 STMAGLSGVGKSSLL 186 (301)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCcHHHHH
Confidence 344799999998643
No 392
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=35.95 E-value=3.4 Score=30.31 Aligned_cols=13 Identities=15% Similarity=0.414 Sum_probs=10.8
Q ss_pred eecCCCCCCceEe
Q psy12526 82 AYGQTGEKTNYLL 94 (103)
Q Consensus 82 aYGqtgSGKT~Tm 94 (103)
-.|++|||||..|
T Consensus 36 llGpnGsGKSTLL 48 (353)
T 1oxx_K 36 ILGPSGAGKTTFM 48 (353)
T ss_dssp EECSCHHHHHHHH
T ss_pred EECCCCCcHHHHH
Confidence 3699999999854
No 393
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=35.58 E-value=10 Score=24.03 Aligned_cols=17 Identities=12% Similarity=0.157 Sum_probs=4.1
Q ss_pred EEEEeecCCCCCCceEe
Q psy12526 78 ACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 78 ~ti~aYGqtgSGKT~Tm 94 (103)
.-|.-.|..|+|||.-+
T Consensus 21 ~~i~v~G~~~~GKssli 37 (208)
T 2yc2_C 21 CKVAVVGEATVGKSALI 37 (208)
T ss_dssp EEEEEC-----------
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45777899999999754
No 394
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=35.54 E-value=12 Score=23.57 Aligned_cols=16 Identities=19% Similarity=0.268 Sum_probs=13.1
Q ss_pred EEEEeecCCCCCCceE
Q psy12526 78 ACIFAYGQTGEKTNYL 93 (103)
Q Consensus 78 ~ti~aYGqtgSGKT~T 93 (103)
..|.-.|..|+|||.-
T Consensus 26 ~ki~v~G~~~~GKSsL 41 (193)
T 2oil_A 26 FKVVLIGESGVGKTNL 41 (193)
T ss_dssp EEEEEESSTTSSHHHH
T ss_pred eEEEEECcCCCCHHHH
Confidence 4577889999999863
No 395
>1eaq_A RUNT-related transcription factor 1; transcription/DNA, acute myeloid leukemia, AML, RUNX1, RUNT domain, chloride binding, IG fold; HET: MSE; 1.25A {Mus musculus} SCOP: b.2.5.6 PDB: 1ean_A 1eao_A* 2j6w_A 1e50_A 1h9d_A* 1ljm_A 1cmo_A 1hjc_A* 1hjb_C* 1io4_C 1co1_A
Probab=35.44 E-value=16 Score=23.47 Aligned_cols=14 Identities=21% Similarity=0.510 Sum_probs=11.6
Q ss_pred eecCCCCCCceEec
Q psy12526 82 AYGQTGEKTNYLLN 95 (103)
Q Consensus 82 aYGqtgSGKT~Tm~ 95 (103)
--|.+|-||+||+.
T Consensus 91 FvgRSGRGKsFtlT 104 (140)
T 1eaq_A 91 FVGRSGRGKSFTLT 104 (140)
T ss_dssp ECSCCCTTCCBEEE
T ss_pred ccccCCCCccEEEE
Confidence 35899999999874
No 396
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=35.36 E-value=8.2 Score=29.14 Aligned_cols=16 Identities=19% Similarity=0.175 Sum_probs=12.0
Q ss_pred EEEeecCCCCCCceEe
Q psy12526 79 CIFAYGQTGEKTNYLL 94 (103)
Q Consensus 79 ti~aYGqtgSGKT~Tm 94 (103)
.|.-.|.+|+|||.++
T Consensus 100 vi~i~G~~GsGKTT~~ 115 (425)
T 2ffh_A 100 LWFLVGLQGSGKTTTA 115 (425)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3434499999999865
No 397
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=34.85 E-value=14 Score=27.31 Aligned_cols=14 Identities=14% Similarity=0.323 Sum_probs=11.1
Q ss_pred EeecCCCCCCceEe
Q psy12526 81 FAYGQTGEKTNYLL 94 (103)
Q Consensus 81 ~aYGqtgSGKT~Tm 94 (103)
.-.|.+|||||..+
T Consensus 30 ~i~G~nG~GKstll 43 (430)
T 1w1w_A 30 SIIGPNGSGKSNMM 43 (430)
T ss_dssp EEECSTTSSHHHHH
T ss_pred EEECCCCCCHHHHH
Confidence 35899999998643
No 398
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=34.74 E-value=18 Score=23.08 Aligned_cols=16 Identities=19% Similarity=0.312 Sum_probs=13.1
Q ss_pred EEEEeecCCCCCCceE
Q psy12526 78 ACIFAYGQTGEKTNYL 93 (103)
Q Consensus 78 ~ti~aYGqtgSGKT~T 93 (103)
.-|.-.|..|+|||.-
T Consensus 34 ~ki~vvG~~~~GKSsl 49 (199)
T 3l0i_B 34 FKLLLIGDSGVGKSCL 49 (199)
T ss_dssp EEEEEECCTTSCCTTT
T ss_pred eEEEEECCCCCCHHHH
Confidence 4577789999999863
No 399
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=34.62 E-value=9.6 Score=25.56 Aligned_cols=17 Identities=18% Similarity=0.243 Sum_probs=13.6
Q ss_pred EEEEeecCCCCCCceEe
Q psy12526 78 ACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 78 ~ti~aYGqtgSGKT~Tm 94 (103)
..++.-|..|+|||.++
T Consensus 15 ~i~~~~GkgGvGKTTl~ 31 (262)
T 1yrb_A 15 MIVVFVGTAGSGKTTLT 31 (262)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred EEEEEeCCCCCCHHHHH
Confidence 45677899999999764
No 400
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=34.55 E-value=12 Score=23.98 Aligned_cols=17 Identities=24% Similarity=0.323 Sum_probs=13.1
Q ss_pred EEEEeecCCCCCCceEe
Q psy12526 78 ACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 78 ~ti~aYGqtgSGKT~Tm 94 (103)
..|.-.|.+|+|||..+
T Consensus 30 ~kv~lvG~~g~GKSTLl 46 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLL 46 (191)
T ss_dssp EEEEEEECTTSSHHHHH
T ss_pred eEEEEECcCCCCHHHHH
Confidence 34567899999998744
No 401
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=34.05 E-value=12 Score=25.41 Aligned_cols=15 Identities=20% Similarity=0.002 Sum_probs=12.2
Q ss_pred EEEEeecCCCCCCce
Q psy12526 78 ACIFAYGQTGEKTNY 92 (103)
Q Consensus 78 ~ti~aYGqtgSGKT~ 92 (103)
-.|.--|..|||||.
T Consensus 23 ~iI~I~G~~GSGKST 37 (252)
T 1uj2_A 23 FLIGVSGGTASGKSS 37 (252)
T ss_dssp EEEEEECSTTSSHHH
T ss_pred EEEEEECCCCCCHHH
Confidence 356677999999986
No 402
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=34.04 E-value=13 Score=23.28 Aligned_cols=16 Identities=19% Similarity=0.312 Sum_probs=13.0
Q ss_pred EEEEeecCCCCCCceE
Q psy12526 78 ACIFAYGQTGEKTNYL 93 (103)
Q Consensus 78 ~ti~aYGqtgSGKT~T 93 (103)
..|.-.|..|+|||.-
T Consensus 17 ~ki~v~G~~~~GKSsl 32 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCL 32 (196)
T ss_dssp EEEEEECSTTSSHHHH
T ss_pred eEEEEECcCCCCHHHH
Confidence 4577899999999863
No 403
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=34.04 E-value=13 Score=23.37 Aligned_cols=17 Identities=18% Similarity=0.139 Sum_probs=13.3
Q ss_pred cEEEEeecCCCCCCceE
Q psy12526 77 NACIFAYGQTGEKTNYL 93 (103)
Q Consensus 77 n~ti~aYGqtgSGKT~T 93 (103)
...|.-.|..|+|||.-
T Consensus 20 ~~ki~v~G~~~~GKSsl 36 (189)
T 1z06_A 20 IFKIIVIGDSNVGKTCL 36 (189)
T ss_dssp EEEEEEECCTTSSHHHH
T ss_pred eEEEEEECCCCCCHHHH
Confidence 34577789999999853
No 404
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=34.03 E-value=13 Score=23.58 Aligned_cols=17 Identities=18% Similarity=0.251 Sum_probs=13.3
Q ss_pred cEEEEeecCCCCCCceE
Q psy12526 77 NACIFAYGQTGEKTNYL 93 (103)
Q Consensus 77 n~ti~aYGqtgSGKT~T 93 (103)
..-|.-.|..|+|||.-
T Consensus 26 ~~ki~vvG~~~~GKSsL 42 (192)
T 2il1_A 26 KLQVIIIGSRGVGKTSL 42 (192)
T ss_dssp EEEEEEECSTTSSHHHH
T ss_pred ceEEEEECCCCCCHHHH
Confidence 34577789999999863
No 405
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=33.90 E-value=10 Score=28.49 Aligned_cols=17 Identities=12% Similarity=0.227 Sum_probs=12.6
Q ss_pred EEEeecCCCCCCceEec
Q psy12526 79 CIFAYGQTGEKTNYLLN 95 (103)
Q Consensus 79 ti~aYGqtgSGKT~Tm~ 95 (103)
.|...|..|+|||.|..
T Consensus 102 vI~ivG~~GvGKTT~a~ 118 (433)
T 2xxa_A 102 VVLMAGLQGAGKTTSVG 118 (433)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 44445999999998753
No 406
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=33.76 E-value=14 Score=22.82 Aligned_cols=16 Identities=19% Similarity=0.293 Sum_probs=12.7
Q ss_pred EEEEeecCCCCCCceE
Q psy12526 78 ACIFAYGQTGEKTNYL 93 (103)
Q Consensus 78 ~ti~aYGqtgSGKT~T 93 (103)
..|.-.|..|+|||.-
T Consensus 11 ~~i~v~G~~~~GKssl 26 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCL 26 (180)
T ss_dssp EEEEEECSTTSSHHHH
T ss_pred eEEEEECcCCCCHHHH
Confidence 3566789999999864
No 407
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=33.69 E-value=11 Score=24.32 Aligned_cols=15 Identities=13% Similarity=-0.015 Sum_probs=12.0
Q ss_pred EEEeecCCCCCCceE
Q psy12526 79 CIFAYGQTGEKTNYL 93 (103)
Q Consensus 79 ti~aYGqtgSGKT~T 93 (103)
.|.--|..|||||..
T Consensus 11 ~I~l~G~~GsGKsT~ 25 (215)
T 1nn5_A 11 LIVLEGVDRAGKSTQ 25 (215)
T ss_dssp EEEEEESTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 466689999999863
No 408
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=33.49 E-value=14 Score=23.13 Aligned_cols=15 Identities=27% Similarity=0.406 Sum_probs=12.3
Q ss_pred EEEeecCCCCCCceE
Q psy12526 79 CIFAYGQTGEKTNYL 93 (103)
Q Consensus 79 ti~aYGqtgSGKT~T 93 (103)
-|.-.|..|+|||.-
T Consensus 17 ~i~v~G~~~~GKssl 31 (195)
T 1x3s_A 17 KILIIGESGVGKSSL 31 (195)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 466789999999863
No 409
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=33.40 E-value=13 Score=23.49 Aligned_cols=16 Identities=6% Similarity=0.219 Sum_probs=13.0
Q ss_pred EEEEeecCCCCCCceE
Q psy12526 78 ACIFAYGQTGEKTNYL 93 (103)
Q Consensus 78 ~ti~aYGqtgSGKT~T 93 (103)
..|...|..|+|||.-
T Consensus 22 ~ki~v~G~~~~GKSsl 37 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTI 37 (190)
T ss_dssp EEEEEEECTTSSHHHH
T ss_pred cEEEEECCCCCCHHHH
Confidence 4567799999999864
No 410
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=33.08 E-value=22 Score=27.80 Aligned_cols=21 Identities=19% Similarity=0.232 Sum_probs=15.9
Q ss_pred CCCcEEEEeecCCCCCCceEec
Q psy12526 74 QGYNACIFAYGQTGEKTNYLLN 95 (103)
Q Consensus 74 ~G~n~ti~aYGqtgSGKT~Tm~ 95 (103)
.+...+|+|- .+|.|||.++.
T Consensus 77 ~~~~g~ILad-~mGlGKT~~~i 97 (644)
T 1z3i_X 77 ENSYGCIMAD-EMGLGKTLQCI 97 (644)
T ss_dssp TTCCEEEECC-CTTSCHHHHHH
T ss_pred cCCCCeEeee-CCCchHHHHHH
Confidence 4556777765 89999998753
No 411
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=33.05 E-value=15 Score=24.95 Aligned_cols=15 Identities=27% Similarity=0.337 Sum_probs=11.4
Q ss_pred EEEeecCCCCCCceE
Q psy12526 79 CIFAYGQTGEKTNYL 93 (103)
Q Consensus 79 ti~aYGqtgSGKT~T 93 (103)
.|.--|.+|||||..
T Consensus 29 ~I~I~G~~GsGKSTl 43 (252)
T 4e22_A 29 VITVDGPSGAGKGTL 43 (252)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 344579999999864
No 412
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=33.02 E-value=14 Score=23.54 Aligned_cols=17 Identities=12% Similarity=0.044 Sum_probs=13.5
Q ss_pred cEEEEeecCCCCCCceE
Q psy12526 77 NACIFAYGQTGEKTNYL 93 (103)
Q Consensus 77 n~ti~aYGqtgSGKT~T 93 (103)
...|.-.|..|+|||.-
T Consensus 28 ~~ki~v~G~~~~GKSsl 44 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSF 44 (199)
T ss_dssp CEEEEEESSTTSSHHHH
T ss_pred CeEEEEECcCCCCHHHH
Confidence 34677799999999863
No 413
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=32.96 E-value=15 Score=25.23 Aligned_cols=15 Identities=13% Similarity=0.255 Sum_probs=12.0
Q ss_pred EEEeecCCCCCCceE
Q psy12526 79 CIFAYGQTGEKTNYL 93 (103)
Q Consensus 79 ti~aYGqtgSGKT~T 93 (103)
.|.-.|++|||||..
T Consensus 11 ~i~i~G~~GsGKsTl 25 (233)
T 3r20_A 11 VVAVDGPAGTGKSSV 25 (233)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 456689999999863
No 414
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=32.86 E-value=55 Score=22.17 Aligned_cols=17 Identities=18% Similarity=0.266 Sum_probs=14.3
Q ss_pred cEEEEeecCCCCCCceE
Q psy12526 77 NACIFAYGQTGEKTNYL 93 (103)
Q Consensus 77 n~ti~aYGqtgSGKT~T 93 (103)
...|...|.+|+|||..
T Consensus 39 ~~~I~vvG~~g~GKSSL 55 (270)
T 1h65_A 39 SLTILVMGKGGVGKSST 55 (270)
T ss_dssp EEEEEEEESTTSSHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 55788899999999874
No 415
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=32.58 E-value=7.5 Score=27.23 Aligned_cols=18 Identities=11% Similarity=-0.125 Sum_probs=14.1
Q ss_pred EEEeecCCCCCCceEecc
Q psy12526 79 CIFAYGQTGEKTNYLLNG 96 (103)
Q Consensus 79 ti~aYGqtgSGKT~Tm~G 96 (103)
-.+-||..|||||.-+++
T Consensus 21 l~v~~G~MgsGKTT~lL~ 38 (234)
T 2orv_A 21 IQVILGPMFSGKSTELMR 38 (234)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHH
Confidence 456789999999976554
No 416
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=32.57 E-value=15 Score=23.25 Aligned_cols=16 Identities=25% Similarity=0.247 Sum_probs=12.8
Q ss_pred EEEEeecCCCCCCceE
Q psy12526 78 ACIFAYGQTGEKTNYL 93 (103)
Q Consensus 78 ~ti~aYGqtgSGKT~T 93 (103)
..|.-.|..|+|||.-
T Consensus 22 ~ki~v~G~~~~GKSsl 37 (191)
T 2a5j_A 22 FKYIIIGDTGVGKSCL 37 (191)
T ss_dssp EEEEEESSTTSSHHHH
T ss_pred eEEEEECcCCCCHHHH
Confidence 3567789999999864
No 417
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=32.56 E-value=13 Score=28.74 Aligned_cols=12 Identities=17% Similarity=0.340 Sum_probs=10.0
Q ss_pred eecCCCCCCceE
Q psy12526 82 AYGQTGEKTNYL 93 (103)
Q Consensus 82 aYGqtgSGKT~T 93 (103)
--|++|||||.-
T Consensus 375 ivG~sGsGKSTL 386 (595)
T 2yl4_A 375 LVGPSGSGKSTV 386 (595)
T ss_dssp EECCTTSSSTHH
T ss_pred EECCCCCCHHHH
Confidence 369999999974
No 418
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=32.55 E-value=6.3 Score=31.10 Aligned_cols=12 Identities=25% Similarity=0.299 Sum_probs=10.4
Q ss_pred ecCCCCCCceEe
Q psy12526 83 YGQTGEKTNYLL 94 (103)
Q Consensus 83 YGqtgSGKT~Tm 94 (103)
.|++|||||..|
T Consensus 109 vGpNGaGKSTLL 120 (608)
T 3j16_B 109 VGTNGIGKSTAL 120 (608)
T ss_dssp ECCTTSSHHHHH
T ss_pred ECCCCChHHHHH
Confidence 699999999754
No 419
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=31.90 E-value=15 Score=27.35 Aligned_cols=29 Identities=17% Similarity=0.219 Sum_probs=19.9
Q ss_pred HHHHHhhC-CC--cEEEEeecCCCCCCceEec
Q psy12526 67 DILDNAFQ-GY--NACIFAYGQTGEKTNYLLN 95 (103)
Q Consensus 67 ~lv~~~~~-G~--n~ti~aYGqtgSGKT~Tm~ 95 (103)
+-++.++. |+ ...+.-+|.+|||||.-+.
T Consensus 165 ~~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~ 196 (400)
T 3lda_A 165 KNLDTLLGGGVETGSITELFGEFRTGKSQLCH 196 (400)
T ss_dssp HHHHHHTTTSEETTSEEEEEESTTSSHHHHHH
T ss_pred hhHHHHhcCCcCCCcEEEEEcCCCCChHHHHH
Confidence 45667774 33 3456679999999997543
No 420
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=31.75 E-value=14 Score=28.74 Aligned_cols=13 Identities=23% Similarity=0.296 Sum_probs=10.4
Q ss_pred EeecCCCCCCceE
Q psy12526 81 FAYGQTGEKTNYL 93 (103)
Q Consensus 81 ~aYGqtgSGKT~T 93 (103)
---|++|||||..
T Consensus 385 ~ivG~sGsGKSTl 397 (598)
T 3qf4_B 385 ALVGPTGSGKTTI 397 (598)
T ss_dssp EEECCTTSSTTHH
T ss_pred EEECCCCCcHHHH
Confidence 3469999999974
No 421
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=31.72 E-value=15 Score=27.84 Aligned_cols=22 Identities=32% Similarity=0.422 Sum_probs=15.1
Q ss_pred hhCCCcEEEEeecCCCCCCceE
Q psy12526 72 AFQGYNACIFAYGQTGEKTNYL 93 (103)
Q Consensus 72 ~~~G~n~ti~aYGqtgSGKT~T 93 (103)
+-.|.--.+.-.|++|+|||..
T Consensus 37 i~~Gei~~vaLvG~nGaGKSTL 58 (427)
T 2qag_B 37 VSQGFCFNILCVGETGLGKSTL 58 (427)
T ss_dssp CC-CCEEEEEEECSTTSSSHHH
T ss_pred ecCCCeeEEEEECCCCCCHHHH
Confidence 4467653355679999999873
No 422
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=31.63 E-value=16 Score=23.37 Aligned_cols=16 Identities=25% Similarity=0.370 Sum_probs=12.8
Q ss_pred EEEEeecCCCCCCceE
Q psy12526 78 ACIFAYGQTGEKTNYL 93 (103)
Q Consensus 78 ~ti~aYGqtgSGKT~T 93 (103)
.-|.-.|..|+|||.-
T Consensus 21 ~~i~v~G~~~~GKSsl 36 (213)
T 3cph_A 21 MKILLIGDSGVGKSCL 36 (213)
T ss_dssp EEEEEECSTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4567789999999863
No 423
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=31.58 E-value=16 Score=23.03 Aligned_cols=16 Identities=6% Similarity=0.100 Sum_probs=12.9
Q ss_pred EEEEeecCCCCCCceE
Q psy12526 78 ACIFAYGQTGEKTNYL 93 (103)
Q Consensus 78 ~ti~aYGqtgSGKT~T 93 (103)
.-|.-.|..|+|||.-
T Consensus 23 ~ki~vvG~~~~GKSsl 38 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSF 38 (189)
T ss_dssp EEEEEECSTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4567789999999863
No 424
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=31.46 E-value=6.2 Score=28.38 Aligned_cols=12 Identities=17% Similarity=0.362 Sum_probs=10.0
Q ss_pred eecCCCCCCceE
Q psy12526 82 AYGQTGEKTNYL 93 (103)
Q Consensus 82 aYGqtgSGKT~T 93 (103)
--|++|||||..
T Consensus 85 ivG~sGsGKSTL 96 (306)
T 3nh6_A 85 LVGPSGAGKSTI 96 (306)
T ss_dssp EESSSCHHHHHH
T ss_pred EECCCCchHHHH
Confidence 469999999874
No 425
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=31.37 E-value=10 Score=29.12 Aligned_cols=15 Identities=13% Similarity=0.142 Sum_probs=11.5
Q ss_pred EEeecCCCCCCceEe
Q psy12526 80 IFAYGQTGEKTNYLL 94 (103)
Q Consensus 80 i~aYGqtgSGKT~Tm 94 (103)
+--.|++|||||..|
T Consensus 32 ~~liG~nGsGKSTLl 46 (483)
T 3euj_A 32 TTLSGGNGAGKSTTM 46 (483)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCcHHHHH
Confidence 334699999999754
No 426
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=31.35 E-value=15 Score=23.63 Aligned_cols=16 Identities=19% Similarity=0.306 Sum_probs=12.9
Q ss_pred EEEEeecCCCCCCceE
Q psy12526 78 ACIFAYGQTGEKTNYL 93 (103)
Q Consensus 78 ~ti~aYGqtgSGKT~T 93 (103)
..|.-.|..|+|||.-
T Consensus 26 ~ki~v~G~~~~GKSsL 41 (200)
T 2o52_A 26 FKFLVIGSAGTGKSCL 41 (200)
T ss_dssp EEEEEEESTTSSHHHH
T ss_pred eEEEEECcCCCCHHHH
Confidence 4567789999999863
No 427
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=31.22 E-value=6.7 Score=28.62 Aligned_cols=21 Identities=24% Similarity=0.265 Sum_probs=14.8
Q ss_pred hhCCCcEEEEeecCCCCCCceEe
Q psy12526 72 AFQGYNACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 72 ~~~G~n~ti~aYGqtgSGKT~Tm 94 (103)
+-.|--..| .|.+|+|||..|
T Consensus 68 i~~Gq~~gI--iG~nGaGKTTLl 88 (347)
T 2obl_A 68 CGIGQRIGI--FAGSGVGKSTLL 88 (347)
T ss_dssp EETTCEEEE--EECTTSSHHHHH
T ss_pred ecCCCEEEE--ECCCCCCHHHHH
Confidence 345654444 799999999764
No 428
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=31.17 E-value=40 Score=21.76 Aligned_cols=15 Identities=20% Similarity=0.237 Sum_probs=11.0
Q ss_pred EEEeecCCCCCCceE
Q psy12526 79 CIFAYGQTGEKTNYL 93 (103)
Q Consensus 79 ti~aYGqtgSGKT~T 93 (103)
.|.--|..|+|||..
T Consensus 40 ~i~ivG~~gvGKTtl 54 (226)
T 2hf9_A 40 AFDFMGAIGSGKTLL 54 (226)
T ss_dssp EEEEEESTTSSHHHH
T ss_pred EEEEEcCCCCCHHHH
Confidence 344459999999864
No 429
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=31.16 E-value=25 Score=21.96 Aligned_cols=18 Identities=6% Similarity=0.117 Sum_probs=14.2
Q ss_pred CcEEEEeecCCCCCCceE
Q psy12526 76 YNACIFAYGQTGEKTNYL 93 (103)
Q Consensus 76 ~n~ti~aYGqtgSGKT~T 93 (103)
...-|.-.|..|+|||.-
T Consensus 21 ~~~~i~v~G~~~~GKssl 38 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSI 38 (189)
T ss_dssp SCEEEEEEEETTSSHHHH
T ss_pred CceEEEEECCCCCCHHHH
Confidence 345677899999999863
No 430
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=31.11 E-value=16 Score=24.02 Aligned_cols=17 Identities=12% Similarity=0.135 Sum_probs=13.7
Q ss_pred cEEEEeecCCCCCCceE
Q psy12526 77 NACIFAYGQTGEKTNYL 93 (103)
Q Consensus 77 n~ti~aYGqtgSGKT~T 93 (103)
...|.-.|.+|+|||..
T Consensus 29 ~~kI~vvG~~~vGKSsL 45 (228)
T 2qu8_A 29 KKTIILSGAPNVGKSSF 45 (228)
T ss_dssp SEEEEEECSTTSSHHHH
T ss_pred CCEEEEECCCCCCHHHH
Confidence 45677899999999863
No 431
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=30.97 E-value=12 Score=23.39 Aligned_cols=16 Identities=6% Similarity=0.094 Sum_probs=12.8
Q ss_pred EEEEeecCCCCCCceE
Q psy12526 78 ACIFAYGQTGEKTNYL 93 (103)
Q Consensus 78 ~ti~aYGqtgSGKT~T 93 (103)
..|...|..|+|||.-
T Consensus 22 ~~i~v~G~~~~GKSsl 37 (181)
T 2h17_A 22 HKVIIVGLDNAGKTTI 37 (181)
T ss_dssp EEEEEEEETTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4567799999999863
No 432
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=30.85 E-value=15 Score=23.31 Aligned_cols=17 Identities=18% Similarity=0.266 Sum_probs=13.4
Q ss_pred cEEEEeecCCCCCCceE
Q psy12526 77 NACIFAYGQTGEKTNYL 93 (103)
Q Consensus 77 n~ti~aYGqtgSGKT~T 93 (103)
..-|.-.|..|+|||.-
T Consensus 23 ~~ki~vvG~~~~GKSsl 39 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSI 39 (192)
T ss_dssp EEEEEEEECTTSSHHHH
T ss_pred ceEEEEECcCCCCHHHH
Confidence 34567789999999863
No 433
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=30.74 E-value=16 Score=23.00 Aligned_cols=16 Identities=6% Similarity=-0.093 Sum_probs=12.5
Q ss_pred EEEEeecCCCCCCceE
Q psy12526 78 ACIFAYGQTGEKTNYL 93 (103)
Q Consensus 78 ~ti~aYGqtgSGKT~T 93 (103)
.-|.-.|..|+|||.-
T Consensus 23 ~ki~v~G~~~~GKSsl 38 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTF 38 (188)
T ss_dssp EEEEEECSTTSSHHHH
T ss_pred cEEEEECCCCCCHHHH
Confidence 3466789999999863
No 434
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=30.71 E-value=16 Score=24.12 Aligned_cols=15 Identities=20% Similarity=0.186 Sum_probs=11.6
Q ss_pred EEEEeecCCCCCCce
Q psy12526 78 ACIFAYGQTGEKTNY 92 (103)
Q Consensus 78 ~ti~aYGqtgSGKT~ 92 (103)
..|.--|..|||||.
T Consensus 13 ~iIgltG~~GSGKST 27 (192)
T 2grj_A 13 MVIGVTGKIGTGKST 27 (192)
T ss_dssp EEEEEECSTTSSHHH
T ss_pred eEEEEECCCCCCHHH
Confidence 345567999999985
No 435
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=30.64 E-value=16 Score=23.09 Aligned_cols=18 Identities=17% Similarity=0.257 Sum_probs=14.0
Q ss_pred cEEEEeecCCCCCCceEe
Q psy12526 77 NACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 77 n~ti~aYGqtgSGKT~Tm 94 (103)
..-|.-.|..|+|||.-+
T Consensus 21 ~~ki~vvG~~~vGKTsLi 38 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALT 38 (187)
T ss_dssp EEEEEEECCTTSSHHHHH
T ss_pred eEEEEEECCCCCcHHHHH
Confidence 346778999999998643
No 436
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=30.52 E-value=7.9 Score=26.27 Aligned_cols=20 Identities=15% Similarity=0.248 Sum_probs=16.4
Q ss_pred cEEEEeecCCCCCCceEecc
Q psy12526 77 NACIFAYGQTGEKTNYLLNG 96 (103)
Q Consensus 77 n~ti~aYGqtgSGKT~Tm~G 96 (103)
.+.|..|+-.|.|||+.-+|
T Consensus 28 ~g~i~v~tG~GkGKTTaA~G 47 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFG 47 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 45688999999999987655
No 437
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=30.48 E-value=17 Score=23.09 Aligned_cols=16 Identities=13% Similarity=0.015 Sum_probs=12.7
Q ss_pred EEEEeecCCCCCCceE
Q psy12526 78 ACIFAYGQTGEKTNYL 93 (103)
Q Consensus 78 ~ti~aYGqtgSGKT~T 93 (103)
.-|.-.|..|+|||.-
T Consensus 21 ~ki~~~G~~~~GKssl 36 (201)
T 2q3h_A 21 VKCVLVGDGAVGKTSL 36 (201)
T ss_dssp EEEEEECSTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4566789999999864
No 438
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=30.37 E-value=48 Score=24.99 Aligned_cols=19 Identities=21% Similarity=0.230 Sum_probs=14.9
Q ss_pred CCcEEEEeecCCCCCCceE
Q psy12526 75 GYNACIFAYGQTGEKTNYL 93 (103)
Q Consensus 75 G~n~ti~aYGqtgSGKT~T 93 (103)
+-...|.-+|..|.|||.-
T Consensus 145 ~~~~~v~I~G~~GiGKTtL 163 (591)
T 1z6t_A 145 GEPGWVTIHGMAGCGKSVL 163 (591)
T ss_dssp TSCEEEEEECCTTSSHHHH
T ss_pred CCCceEEEEcCCCCCHHHH
Confidence 3345678899999999964
No 439
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=30.37 E-value=17 Score=22.91 Aligned_cols=17 Identities=6% Similarity=0.104 Sum_probs=13.4
Q ss_pred cEEEEeecCCCCCCceE
Q psy12526 77 NACIFAYGQTGEKTNYL 93 (103)
Q Consensus 77 n~ti~aYGqtgSGKT~T 93 (103)
...|.-.|..|+|||.-
T Consensus 17 ~~ki~v~G~~~~GKSsl 33 (199)
T 4bas_A 17 KLQVVMCGLDNSGKTTI 33 (199)
T ss_dssp EEEEEEECCTTSCHHHH
T ss_pred CcEEEEECCCCCCHHHH
Confidence 44577899999999863
No 440
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=30.33 E-value=3.8 Score=29.81 Aligned_cols=14 Identities=21% Similarity=0.351 Sum_probs=11.7
Q ss_pred EeecCCCCCCceEe
Q psy12526 81 FAYGQTGEKTNYLL 94 (103)
Q Consensus 81 ~aYGqtgSGKT~Tm 94 (103)
.-.|.+|||||..|
T Consensus 64 ~lvG~NGaGKStLl 77 (415)
T 4aby_A 64 AFTGETGAGKSIIV 77 (415)
T ss_dssp EEEESHHHHHHHHT
T ss_pred EEECCCCCCHHHHH
Confidence 35799999999866
No 441
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=30.20 E-value=15 Score=25.50 Aligned_cols=19 Identities=16% Similarity=0.438 Sum_probs=13.9
Q ss_pred hCCCcEEEEeecCCCCCCceE
Q psy12526 73 FQGYNACIFAYGQTGEKTNYL 93 (103)
Q Consensus 73 ~~G~n~ti~aYGqtgSGKT~T 93 (103)
+.|-+ |.--|.+|||||..
T Consensus 46 l~g~~--i~l~G~~GsGKSTl 64 (250)
T 3nwj_A 46 LNGRS--MYLVGMMGSGKTTV 64 (250)
T ss_dssp HTTCC--EEEECSTTSCHHHH
T ss_pred cCCCE--EEEECCCCCCHHHH
Confidence 34665 44589999999864
No 442
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=30.13 E-value=10 Score=25.79 Aligned_cols=18 Identities=17% Similarity=0.158 Sum_probs=13.7
Q ss_pred cEEEEeecCCCCCCceEe
Q psy12526 77 NACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 77 n~ti~aYGqtgSGKT~Tm 94 (103)
...|.-.|.+|+|||..+
T Consensus 21 ~l~I~lvG~~g~GKSSli 38 (247)
T 3lxw_A 21 TRRLILVGRTGAGKSATG 38 (247)
T ss_dssp EEEEEEESSTTSSHHHHH
T ss_pred ceEEEEECCCCCcHHHHH
Confidence 345667899999998643
No 443
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=30.02 E-value=15 Score=27.00 Aligned_cols=15 Identities=7% Similarity=0.096 Sum_probs=12.8
Q ss_pred EEEeecCCCCCCceE
Q psy12526 79 CIFAYGQTGEKTNYL 93 (103)
Q Consensus 79 ti~aYGqtgSGKT~T 93 (103)
.+.-||+.|+|||.-
T Consensus 30 iteI~G~pGsGKTtL 44 (333)
T 3io5_A 30 LLILAGPSKSFKSNF 44 (333)
T ss_dssp EEEEEESSSSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 578999999999853
No 444
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=29.93 E-value=27 Score=25.09 Aligned_cols=17 Identities=12% Similarity=0.034 Sum_probs=12.6
Q ss_pred EEEEeecCCCCCCceEe
Q psy12526 78 ACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 78 ~ti~aYGqtgSGKT~Tm 94 (103)
..+--.|.+|+|||..+
T Consensus 56 ~~v~i~G~~GaGKSTLl 72 (337)
T 2qm8_A 56 IRVGITGVPGVGKSTTI 72 (337)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 34445799999998754
No 445
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=29.88 E-value=15 Score=26.94 Aligned_cols=17 Identities=12% Similarity=0.077 Sum_probs=14.0
Q ss_pred cEEEEeecCCCCCCceE
Q psy12526 77 NACIFAYGQTGEKTNYL 93 (103)
Q Consensus 77 n~ti~aYGqtgSGKT~T 93 (103)
-.-|+-.|..||||+..
T Consensus 33 ~~killlG~~~SGKST~ 49 (362)
T 1zcb_A 33 LVKILLLGAGESGKSTF 49 (362)
T ss_dssp CEEEEEECSTTSSHHHH
T ss_pred ccEEEEECCCCCcHHHH
Confidence 45688999999999863
No 446
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=29.82 E-value=12 Score=30.75 Aligned_cols=14 Identities=21% Similarity=0.434 Sum_probs=12.1
Q ss_pred EEEeecCCCCCCce
Q psy12526 79 CIFAYGQTGEKTNY 92 (103)
Q Consensus 79 ti~aYGqtgSGKT~ 92 (103)
.|+-||+.|+|||.
T Consensus 513 gvLl~GPPGtGKT~ 526 (806)
T 3cf2_A 513 GVLFYGPPGCGKTL 526 (806)
T ss_dssp CCEEESSTTSSHHH
T ss_pred eEEEecCCCCCchH
Confidence 46789999999986
No 447
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=29.73 E-value=16 Score=23.53 Aligned_cols=17 Identities=12% Similarity=0.118 Sum_probs=13.4
Q ss_pred cEEEEeecCCCCCCceE
Q psy12526 77 NACIFAYGQTGEKTNYL 93 (103)
Q Consensus 77 n~ti~aYGqtgSGKT~T 93 (103)
..-|.-.|..|+|||.-
T Consensus 25 ~~ki~vvG~~~~GKSsl 41 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCL 41 (207)
T ss_dssp EEEEEEEECTTSSHHHH
T ss_pred CcEEEEECcCCCCHHHH
Confidence 34577799999999863
No 448
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=29.63 E-value=18 Score=22.56 Aligned_cols=15 Identities=20% Similarity=0.076 Sum_probs=12.3
Q ss_pred EEEEeecCCCCCCce
Q psy12526 78 ACIFAYGQTGEKTNY 92 (103)
Q Consensus 78 ~ti~aYGqtgSGKT~ 92 (103)
.-|.-.|..|+|||.
T Consensus 15 ~ki~vvG~~~~GKss 29 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTT 29 (198)
T ss_dssp EEEEEECSTTSSHHH
T ss_pred cEEEEECCCCCCHHH
Confidence 456778999999985
No 449
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=29.40 E-value=16 Score=23.01 Aligned_cols=15 Identities=7% Similarity=0.071 Sum_probs=12.1
Q ss_pred EEEEeecCCCCCCce
Q psy12526 78 ACIFAYGQTGEKTNY 92 (103)
Q Consensus 78 ~ti~aYGqtgSGKT~ 92 (103)
.-|.-.|..|+|||.
T Consensus 24 ~ki~v~G~~~~GKSs 38 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTS 38 (191)
T ss_dssp EEEEEEESTTSSHHH
T ss_pred eEEEEECCCCcCHHH
Confidence 346678999999985
No 450
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=29.30 E-value=17 Score=27.30 Aligned_cols=21 Identities=19% Similarity=0.308 Sum_probs=14.4
Q ss_pred hhCCCcEEEEeecCCCCCCceEe
Q psy12526 72 AFQGYNACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 72 ~~~G~n~ti~aYGqtgSGKT~Tm 94 (103)
+-.|--.+| .|.+|+|||..|
T Consensus 154 i~~Gq~~~I--vG~sGsGKSTLl 174 (438)
T 2dpy_A 154 VGRGQRMGL--FAGSGVGKSVLL 174 (438)
T ss_dssp CBTTCEEEE--EECTTSSHHHHH
T ss_pred ecCCCEEEE--ECCCCCCHHHHH
Confidence 334554444 799999999743
No 451
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=29.27 E-value=10 Score=28.81 Aligned_cols=19 Identities=21% Similarity=0.247 Sum_probs=13.3
Q ss_pred CCCcEEEEeecCCCCCCceEe
Q psy12526 74 QGYNACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 74 ~G~n~ti~aYGqtgSGKT~Tm 94 (103)
.|--..| .|.+|||||..+
T Consensus 137 ~Ge~v~I--vGpnGsGKSTLl 155 (460)
T 2npi_A 137 EGPRVVI--VGGSQTGKTSLS 155 (460)
T ss_dssp SCCCEEE--EESTTSSHHHHH
T ss_pred CCCEEEE--ECCCCCCHHHHH
Confidence 4544444 699999998743
No 452
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=29.23 E-value=12 Score=28.89 Aligned_cols=12 Identities=25% Similarity=0.321 Sum_probs=10.0
Q ss_pred eecCCCCCCceE
Q psy12526 82 AYGQTGEKTNYL 93 (103)
Q Consensus 82 aYGqtgSGKT~T 93 (103)
--|++|||||..
T Consensus 372 ivG~sGsGKSTl 383 (578)
T 4a82_A 372 FVGMSGGGKSTL 383 (578)
T ss_dssp EECSTTSSHHHH
T ss_pred EECCCCChHHHH
Confidence 469999999974
No 453
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=29.18 E-value=11 Score=27.12 Aligned_cols=16 Identities=13% Similarity=0.214 Sum_probs=11.8
Q ss_pred EEEeecCCCCCCceEe
Q psy12526 79 CIFAYGQTGEKTNYLL 94 (103)
Q Consensus 79 ti~aYGqtgSGKT~Tm 94 (103)
.+.-.|.+|||||..+
T Consensus 172 k~~IvG~nGsGKSTLl 187 (365)
T 1lw7_A 172 TVAILGGESSGKSVLV 187 (365)
T ss_dssp EEEEECCTTSHHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 3445699999998743
No 454
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=29.10 E-value=23 Score=29.32 Aligned_cols=19 Identities=26% Similarity=0.249 Sum_probs=14.8
Q ss_pred HhhCCCcEEEEeecCCCCCCceE
Q psy12526 71 NAFQGYNACIFAYGQTGEKTNYL 93 (103)
Q Consensus 71 ~~~~G~n~ti~aYGqtgSGKT~T 93 (103)
.+++|. +|--+||+|||-+
T Consensus 94 ~ll~G~----Iaea~TGeGKTla 112 (844)
T 1tf5_A 94 ALHDGN----IAEMKTGEGKTLT 112 (844)
T ss_dssp HHHTTS----EEECCTTSCHHHH
T ss_pred HHhCCC----EEEccCCcHHHHH
Confidence 356786 6888999999853
No 455
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=28.92 E-value=18 Score=33.56 Aligned_cols=17 Identities=12% Similarity=0.214 Sum_probs=13.8
Q ss_pred cEEEEeecCCCCCCceE
Q psy12526 77 NACIFAYGQTGEKTNYL 93 (103)
Q Consensus 77 n~ti~aYGqtgSGKT~T 93 (103)
+-.|+-+|+||||||..
T Consensus 923 r~gvmlvGptgsGKTt~ 939 (2695)
T 4akg_A 923 QQALILVGKAGCGKTAT 939 (2695)
T ss_dssp CSEEEEECSTTSSHHHH
T ss_pred cceEEEECCCCCCHHHH
Confidence 34588999999999863
No 456
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=28.89 E-value=17 Score=23.63 Aligned_cols=17 Identities=12% Similarity=0.173 Sum_probs=13.3
Q ss_pred cEEEEeecCCCCCCceE
Q psy12526 77 NACIFAYGQTGEKTNYL 93 (103)
Q Consensus 77 n~ti~aYGqtgSGKT~T 93 (103)
..-|.-.|..|+|||.-
T Consensus 15 ~~ki~v~G~~~~GKSsl 31 (221)
T 3gj0_A 15 QFKLVLVGDGGTGKTTF 31 (221)
T ss_dssp EEEEEEEECTTSSHHHH
T ss_pred ceEEEEECCCCCCHHHH
Confidence 34577799999999853
No 457
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=28.89 E-value=17 Score=23.13 Aligned_cols=15 Identities=13% Similarity=0.151 Sum_probs=12.2
Q ss_pred EEEeecCCCCCCceE
Q psy12526 79 CIFAYGQTGEKTNYL 93 (103)
Q Consensus 79 ti~aYGqtgSGKT~T 93 (103)
-|.-.|..|+|||.-
T Consensus 25 ki~~vG~~~vGKSsl 39 (190)
T 1m2o_B 25 KLLFLGLDNAGKTTL 39 (190)
T ss_dssp EEEEEESTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 466789999999864
No 458
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=28.86 E-value=14 Score=25.66 Aligned_cols=16 Identities=13% Similarity=0.108 Sum_probs=12.8
Q ss_pred EEEEeecCCCCCCceE
Q psy12526 78 ACIFAYGQTGEKTNYL 93 (103)
Q Consensus 78 ~ti~aYGqtgSGKT~T 93 (103)
-.|.--|..|||||+.
T Consensus 76 ~iI~I~G~~GSGKSTv 91 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSV 91 (281)
T ss_dssp EEEEEEECTTSCHHHH
T ss_pred EEEEEECCCCCCHHHH
Confidence 4577789999999863
No 459
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=28.53 E-value=15 Score=26.81 Aligned_cols=19 Identities=11% Similarity=0.177 Sum_probs=15.5
Q ss_pred CCCcEEEEeecCCCCCCce
Q psy12526 74 QGYNACIFAYGQTGEKTNY 92 (103)
Q Consensus 74 ~G~n~ti~aYGqtgSGKT~ 92 (103)
...+..|+-+|.+|+||+.
T Consensus 157 a~~~~~vli~Ge~GtGK~~ 175 (387)
T 1ny5_A 157 SCAECPVLITGESGVGKEV 175 (387)
T ss_dssp TTCCSCEEEECSTTSSHHH
T ss_pred cCCCCCeEEecCCCcCHHH
Confidence 3456778899999999985
No 460
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=28.51 E-value=19 Score=23.23 Aligned_cols=16 Identities=19% Similarity=0.117 Sum_probs=12.9
Q ss_pred cEEEEeecCCCCCCce
Q psy12526 77 NACIFAYGQTGEKTNY 92 (103)
Q Consensus 77 n~ti~aYGqtgSGKT~ 92 (103)
...|.-.|..|+|||.
T Consensus 11 ~~ki~vvG~~~~GKSs 26 (218)
T 4djt_A 11 TYKICLIGDGGVGKTT 26 (218)
T ss_dssp EEEEEEECCTTSSHHH
T ss_pred ccEEEEECCCCCCHHH
Confidence 4456778999999986
No 461
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=28.41 E-value=17 Score=32.96 Aligned_cols=26 Identities=27% Similarity=0.309 Sum_probs=17.9
Q ss_pred HHHhhC-CC---cEEEEeecCCCCCCceEe
Q psy12526 69 LDNAFQ-GY---NACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 69 v~~~~~-G~---n~ti~aYGqtgSGKT~Tm 94 (103)
++.++. |. ...|+-||++|+|||+..
T Consensus 1415 LD~lLG~GGi~~g~~vll~GppGtGKT~LA 1444 (2050)
T 3cmu_A 1415 LDIALGAGGLPMGRIVEIYGPESSGKTTLT 1444 (2050)
T ss_dssp HHHHHSSSSEETTSEEEEECCTTSSHHHHH
T ss_pred HHHhcCCCCccCCeEEEEECCCCCCHHHHH
Confidence 555565 22 234677999999999854
No 462
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=28.29 E-value=35 Score=30.31 Aligned_cols=24 Identities=13% Similarity=0.367 Sum_probs=15.9
Q ss_pred HHHHhhCCCcEEEEeecCCCCCCce
Q psy12526 68 ILDNAFQGYNACIFAYGQTGEKTNY 92 (103)
Q Consensus 68 lv~~~~~G~n~ti~aYGqtgSGKT~ 92 (103)
.+..++++-. .++.-.+||||||.
T Consensus 934 ~~~~l~~~~~-nvlv~APTGSGKTl 957 (1724)
T 4f92_B 934 VFNTVYNSDD-NVFVGAPTGSGKTI 957 (1724)
T ss_dssp HHHHHHSCCS-CEEEECCTTSCCHH
T ss_pred HHHHHhcCCC-cEEEEeCCCCCchH
Confidence 4455555432 35567899999985
No 463
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=28.07 E-value=20 Score=22.66 Aligned_cols=15 Identities=13% Similarity=0.071 Sum_probs=12.4
Q ss_pred EEEEeecCCCCCCce
Q psy12526 78 ACIFAYGQTGEKTNY 92 (103)
Q Consensus 78 ~ti~aYGqtgSGKT~ 92 (103)
.-|.-.|..|+|||.
T Consensus 24 ~ki~~vG~~~~GKSs 38 (194)
T 3reg_A 24 LKIVVVGDGAVGKTC 38 (194)
T ss_dssp EEEEEECSTTSSHHH
T ss_pred eEEEEECcCCCCHHH
Confidence 457779999999985
No 464
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=27.98 E-value=22 Score=23.66 Aligned_cols=14 Identities=14% Similarity=0.133 Sum_probs=11.0
Q ss_pred EEeecCCCCCCceE
Q psy12526 80 IFAYGQTGEKTNYL 93 (103)
Q Consensus 80 i~aYGqtgSGKT~T 93 (103)
|.--|..|||||..
T Consensus 19 i~i~G~~gsGKst~ 32 (236)
T 1q3t_A 19 IAIDGPASSGKSTV 32 (236)
T ss_dssp EEEECSSCSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 44579999999863
No 465
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=27.92 E-value=18 Score=23.07 Aligned_cols=15 Identities=7% Similarity=-0.055 Sum_probs=12.1
Q ss_pred EEEEeecCCCCCCce
Q psy12526 78 ACIFAYGQTGEKTNY 92 (103)
Q Consensus 78 ~ti~aYGqtgSGKT~ 92 (103)
.-|.-.|..|+|||.
T Consensus 25 ~ki~vvG~~~~GKSs 39 (201)
T 3oes_A 25 RKVVILGYRCVGKTS 39 (201)
T ss_dssp EEEEEEESTTSSHHH
T ss_pred EEEEEECCCCcCHHH
Confidence 356678999999985
No 466
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=33.98 E-value=13 Score=23.88 Aligned_cols=18 Identities=17% Similarity=0.115 Sum_probs=13.6
Q ss_pred cEEEEeecCCCCCCceEe
Q psy12526 77 NACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 77 n~ti~aYGqtgSGKT~Tm 94 (103)
..-|.-.|..|+|||.-+
T Consensus 30 ~~ki~v~G~~~~GKSsli 47 (204)
T 3th5_A 30 AIKCVVVGDGAVGKTCLL 47 (204)
Confidence 344666899999999754
No 467
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=27.86 E-value=18 Score=27.74 Aligned_cols=16 Identities=19% Similarity=0.320 Sum_probs=13.4
Q ss_pred cEEEEeecCCCCCCce
Q psy12526 77 NACIFAYGQTGEKTNY 92 (103)
Q Consensus 77 n~ti~aYGqtgSGKT~ 92 (103)
...|+--|..|||||+
T Consensus 35 ~~lIvlvGlpGSGKST 50 (520)
T 2axn_A 35 PTVIVMVGLPARGKTY 50 (520)
T ss_dssp CEEEEEECCTTSSHHH
T ss_pred CeEEEEECCCCCCHHH
Confidence 3467888999999987
No 468
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=27.84 E-value=14 Score=28.61 Aligned_cols=12 Identities=17% Similarity=0.415 Sum_probs=10.0
Q ss_pred eecCCCCCCceE
Q psy12526 82 AYGQTGEKTNYL 93 (103)
Q Consensus 82 aYGqtgSGKT~T 93 (103)
--|++|||||..
T Consensus 374 ivG~sGsGKSTl 385 (582)
T 3b5x_A 374 LVGRSGSGKSTI 385 (582)
T ss_pred EECCCCCCHHHH
Confidence 369999999874
No 469
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=27.78 E-value=18 Score=23.49 Aligned_cols=17 Identities=18% Similarity=0.212 Sum_probs=13.3
Q ss_pred cEEEEeecCCCCCCceE
Q psy12526 77 NACIFAYGQTGEKTNYL 93 (103)
Q Consensus 77 n~ti~aYGqtgSGKT~T 93 (103)
..-|.-.|..|+|||.-
T Consensus 34 ~~ki~vvG~~~vGKSsl 50 (214)
T 2j1l_A 34 SVKVVLVGDGGCGKTSL 50 (214)
T ss_dssp EEEEEEEECTTSSHHHH
T ss_pred eEEEEEECcCCCCHHHH
Confidence 34577789999999863
No 470
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=27.73 E-value=8.4 Score=30.17 Aligned_cols=15 Identities=20% Similarity=0.290 Sum_probs=11.9
Q ss_pred EEeecCCCCCCceEe
Q psy12526 80 IFAYGQTGEKTNYLL 94 (103)
Q Consensus 80 i~aYGqtgSGKT~Tm 94 (103)
|--.|.+|||||..|
T Consensus 48 iaIvG~nGsGKSTLL 62 (608)
T 3szr_A 48 IAVIGDQSSGKSSVL 62 (608)
T ss_dssp EECCCCTTSCHHHHH
T ss_pred EEEECCCCChHHHHH
Confidence 445799999999854
No 471
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=27.65 E-value=18 Score=23.09 Aligned_cols=17 Identities=12% Similarity=0.100 Sum_probs=13.4
Q ss_pred cEEEEeecCCCCCCceE
Q psy12526 77 NACIFAYGQTGEKTNYL 93 (103)
Q Consensus 77 n~ti~aYGqtgSGKT~T 93 (103)
..-|.-.|..|+|||.-
T Consensus 25 ~~ki~vvG~~~~GKSsl 41 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCL 41 (201)
T ss_dssp EEEEEEEESTTSSHHHH
T ss_pred ceEEEEECCCCCCHHHH
Confidence 34577789999999863
No 472
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=27.52 E-value=18 Score=22.73 Aligned_cols=16 Identities=13% Similarity=0.044 Sum_probs=12.9
Q ss_pred EEEEeecCCCCCCceE
Q psy12526 78 ACIFAYGQTGEKTNYL 93 (103)
Q Consensus 78 ~ti~aYGqtgSGKT~T 93 (103)
.-|.-.|..|+|||.-
T Consensus 19 ~ki~v~G~~~~GKssl 34 (194)
T 2atx_A 19 LKCVVVGDGAVGKTCL 34 (194)
T ss_dssp EEEEEEECTTSSHHHH
T ss_pred EEEEEECCCCCCHHHH
Confidence 4577789999999863
No 473
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=27.20 E-value=24 Score=31.43 Aligned_cols=26 Identities=23% Similarity=0.252 Sum_probs=0.0
Q ss_pred HHHHHhhC--CC--cEEEEeecCCCCCCce
Q psy12526 67 DILDNAFQ--GY--NACIFAYGQTGEKTNY 92 (103)
Q Consensus 67 ~lv~~~~~--G~--n~ti~aYGqtgSGKT~ 92 (103)
+.++.++. |+ ...++-+|.+|||||+
T Consensus 20 ~~LD~lL~~GGi~~G~i~lI~G~pGsGKT~ 49 (1706)
T 3cmw_A 20 LSLDIALGAGGLPMGRIVEIYGPESSGKTT 49 (1706)
T ss_dssp HHHHHHTSSSSEETTSEEEEECSTTSSHHH
T ss_pred HHHHHHhhcCCcCCCeEEEEECCCCCCHHH
No 474
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=27.20 E-value=32 Score=25.78 Aligned_cols=27 Identities=15% Similarity=0.220 Sum_probs=19.2
Q ss_pred HHHHHhhCCCc--EEEEeecCCCCCCceE
Q psy12526 67 DILDNAFQGYN--ACIFAYGQTGEKTNYL 93 (103)
Q Consensus 67 ~lv~~~~~G~n--~ti~aYGqtgSGKT~T 93 (103)
+-++.++.|+. ..++-.|.+|+|||.-
T Consensus 185 ~~LD~~lgGl~~G~liiIaG~pG~GKTtl 213 (444)
T 3bgw_A 185 TELDRMTYGYKRRNFVLIAARPSMGKTAF 213 (444)
T ss_dssp HHHHHHHSSBCSSCEEEEEECSSSSHHHH
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCChHHH
Confidence 34566666663 3577889999999853
No 475
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=27.18 E-value=45 Score=22.56 Aligned_cols=17 Identities=12% Similarity=0.262 Sum_probs=13.7
Q ss_pred cEEEEeecCCCCCCceE
Q psy12526 77 NACIFAYGQTGEKTNYL 93 (103)
Q Consensus 77 n~ti~aYGqtgSGKT~T 93 (103)
...|.-.|.+|+|||..
T Consensus 36 ~~~I~lvG~~g~GKSSL 52 (262)
T 3def_A 36 SMTVLVLGKGGVGKSST 52 (262)
T ss_dssp EEEEEEEECTTSSHHHH
T ss_pred CcEEEEECCCCCCHHHH
Confidence 45677889999999864
No 476
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=27.11 E-value=19 Score=26.92 Aligned_cols=19 Identities=16% Similarity=0.291 Sum_probs=14.7
Q ss_pred CCcEEEEeecCCCCCCceE
Q psy12526 75 GYNACIFAYGQTGEKTNYL 93 (103)
Q Consensus 75 G~n~ti~aYGqtgSGKT~T 93 (103)
.-...|+-.|..|||||+.
T Consensus 37 ~~~~~IvlvGlpGsGKSTi 55 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYI 55 (469)
T ss_dssp -CCEEEEEECCTTSSHHHH
T ss_pred CCcEEEEEECCCCCCHHHH
Confidence 3446788899999999873
No 477
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=27.09 E-value=8.9 Score=30.18 Aligned_cols=14 Identities=14% Similarity=0.109 Sum_probs=11.0
Q ss_pred EeecCCCCCCceEe
Q psy12526 81 FAYGQTGEKTNYLL 94 (103)
Q Consensus 81 ~aYGqtgSGKT~Tm 94 (103)
--.|.+|||||..|
T Consensus 121 ~LiG~NGsGKSTLl 134 (607)
T 3bk7_A 121 GIVGPNGTGKTTAV 134 (607)
T ss_dssp EEECCTTSSHHHHH
T ss_pred EEECCCCChHHHHH
Confidence 34799999999743
No 478
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=27.03 E-value=21 Score=23.00 Aligned_cols=15 Identities=20% Similarity=0.333 Sum_probs=12.7
Q ss_pred EEEEeecCCCCCCce
Q psy12526 78 ACIFAYGQTGEKTNY 92 (103)
Q Consensus 78 ~ti~aYGqtgSGKT~ 92 (103)
.-|.-.|..|+|||.
T Consensus 26 ~ki~vvG~~~~GKSs 40 (217)
T 2f7s_A 26 IKLLALGDSGVGKTT 40 (217)
T ss_dssp EEEEEESCTTSSHHH
T ss_pred EEEEEECcCCCCHHH
Confidence 457778999999986
No 479
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=27.03 E-value=14 Score=28.53 Aligned_cols=13 Identities=15% Similarity=0.261 Sum_probs=10.6
Q ss_pred eecCCCCCCceEe
Q psy12526 82 AYGQTGEKTNYLL 94 (103)
Q Consensus 82 aYGqtgSGKT~Tm 94 (103)
-.|++|||||..|
T Consensus 52 LvG~NGaGKSTLl 64 (538)
T 1yqt_A 52 IVGPNGTGKSTAV 64 (538)
T ss_dssp EECCTTSSHHHHH
T ss_pred EECCCCCCHHHHH
Confidence 4799999999743
No 480
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=26.99 E-value=20 Score=22.65 Aligned_cols=18 Identities=11% Similarity=0.058 Sum_probs=13.8
Q ss_pred cEEEEeecCCCCCCceEe
Q psy12526 77 NACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 77 n~ti~aYGqtgSGKT~Tm 94 (103)
..-|.-.|..|+|||.-+
T Consensus 20 ~~ki~ivG~~~vGKSsL~ 37 (184)
T 3ihw_A 20 ELKVGIVGNLSSGKSALV 37 (184)
T ss_dssp EEEEEEECCTTSCHHHHH
T ss_pred eeEEEEECCCCCCHHHHH
Confidence 455777899999998643
No 481
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=26.84 E-value=13 Score=28.70 Aligned_cols=12 Identities=17% Similarity=0.415 Sum_probs=10.0
Q ss_pred eecCCCCCCceE
Q psy12526 82 AYGQTGEKTNYL 93 (103)
Q Consensus 82 aYGqtgSGKT~T 93 (103)
--|++|||||..
T Consensus 374 ivG~sGsGKSTL 385 (582)
T 3b60_A 374 LVGRSGSGKSTI 385 (582)
T ss_dssp EEECTTSSHHHH
T ss_pred EECCCCCCHHHH
Confidence 469999999874
No 482
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=26.59 E-value=20 Score=23.31 Aligned_cols=18 Identities=17% Similarity=0.128 Sum_probs=14.0
Q ss_pred CcEEEEeecCCCCCCceE
Q psy12526 76 YNACIFAYGQTGEKTNYL 93 (103)
Q Consensus 76 ~n~ti~aYGqtgSGKT~T 93 (103)
...-|...|..|+|||.-
T Consensus 27 ~~~ki~vvG~~~vGKSsL 44 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTAL 44 (205)
T ss_dssp CEEEEEEEESTTSSHHHH
T ss_pred eeeEEEEECCCCCCHHHH
Confidence 345677899999999863
No 483
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=26.52 E-value=20 Score=33.37 Aligned_cols=26 Identities=15% Similarity=0.310 Sum_probs=16.8
Q ss_pred HHHHhhCCCcEEEEeecCCCCCCceEe
Q psy12526 68 ILDNAFQGYNACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 68 lv~~~~~G~n~ti~aYGqtgSGKT~Tm 94 (103)
+++.++.+- --|+-+|++|+|||-++
T Consensus 1259 ll~~~l~~~-~~vLL~GPpGtGKT~la 1284 (2695)
T 4akg_A 1259 IFYDLLNSK-RGIILCGPPGSGKTMIM 1284 (2695)
T ss_dssp HHHHHHHHT-CEEEEECSTTSSHHHHH
T ss_pred HHHHHHHCC-CeEEEECCCCCCHHHHH
Confidence 344444322 24678999999998654
No 484
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=26.52 E-value=12 Score=28.61 Aligned_cols=17 Identities=12% Similarity=0.112 Sum_probs=14.0
Q ss_pred EEEeecCCCCCCceEec
Q psy12526 79 CIFAYGQTGEKTNYLLN 95 (103)
Q Consensus 79 ti~aYGqtgSGKT~Tm~ 95 (103)
..+-.|.-|+|||+.+.
T Consensus 163 v~~I~G~aGsGKTt~I~ 179 (446)
T 3vkw_A 163 VVLVDGVPGCGKTKEIL 179 (446)
T ss_dssp EEEEEECTTSCHHHHHH
T ss_pred EEEEEcCCCCCHHHHHH
Confidence 45678999999999764
No 485
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=26.41 E-value=14 Score=26.47 Aligned_cols=18 Identities=17% Similarity=0.180 Sum_probs=14.0
Q ss_pred cEEEEeecCCCCCCceEe
Q psy12526 77 NACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 77 n~ti~aYGqtgSGKT~Tm 94 (103)
...|.-.|.+|+|||..+
T Consensus 167 ~~~v~lvG~~gvGKSTLi 184 (357)
T 2e87_A 167 IPTVVIAGHPNVGKSTLL 184 (357)
T ss_dssp SCEEEEECSTTSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 346777899999999644
No 486
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=26.36 E-value=20 Score=22.80 Aligned_cols=16 Identities=13% Similarity=0.158 Sum_probs=12.5
Q ss_pred EEEEeecCCCCCCceE
Q psy12526 78 ACIFAYGQTGEKTNYL 93 (103)
Q Consensus 78 ~ti~aYGqtgSGKT~T 93 (103)
.-|.-.|..|+|||.-
T Consensus 21 ~ki~~vG~~~vGKTsL 36 (196)
T 3llu_A 21 PRILLMGLRRSGKSSI 36 (196)
T ss_dssp CEEEEEESTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 3466789999999854
No 487
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=26.15 E-value=15 Score=28.91 Aligned_cols=23 Identities=17% Similarity=0.260 Sum_probs=16.0
Q ss_pred hhCCCcEEE------EeecCCCCCCceEe
Q psy12526 72 AFQGYNACI------FAYGQTGEKTNYLL 94 (103)
Q Consensus 72 ~~~G~n~ti------~aYGqtgSGKT~Tm 94 (103)
++++.+.+| --.|.+|||||..+
T Consensus 337 ~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl 365 (670)
T 3ux8_A 337 NLKNVSVKIPLGTFVAVTGVSGSGKSTLV 365 (670)
T ss_dssp TCCSEEEEEETTSEEEEECSTTSSHHHHH
T ss_pred ccccceeEecCCCEEEEEeeCCCCHHHHH
Confidence 355555443 34699999999876
No 488
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=25.79 E-value=15 Score=28.45 Aligned_cols=13 Identities=31% Similarity=0.578 Sum_probs=10.4
Q ss_pred eecCCCCCCceEe
Q psy12526 82 AYGQTGEKTNYLL 94 (103)
Q Consensus 82 aYGqtgSGKT~Tm 94 (103)
--|++|||||..+
T Consensus 374 ivG~sGsGKSTll 386 (587)
T 3qf4_A 374 VLGETGSGKSTLM 386 (587)
T ss_dssp EECSSSSSHHHHH
T ss_pred EECCCCCCHHHHH
Confidence 4699999999743
No 489
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=25.52 E-value=21 Score=23.12 Aligned_cols=17 Identities=24% Similarity=0.286 Sum_probs=13.4
Q ss_pred EEEEeecCCCCCCceEe
Q psy12526 78 ACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 78 ~ti~aYGqtgSGKT~Tm 94 (103)
.-|.-.|..|+|||.-+
T Consensus 27 ~ki~lvG~~~vGKSsLi 43 (201)
T 2ew1_A 27 FKIVLIGNAGVGKTCLV 43 (201)
T ss_dssp EEEEEEESTTSSHHHHH
T ss_pred eEEEEECcCCCCHHHHH
Confidence 45677899999998643
No 490
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=24.84 E-value=24 Score=22.99 Aligned_cols=16 Identities=25% Similarity=0.279 Sum_probs=12.9
Q ss_pred EEEEeecCCCCCCceE
Q psy12526 78 ACIFAYGQTGEKTNYL 93 (103)
Q Consensus 78 ~ti~aYGqtgSGKT~T 93 (103)
.-|.-.|..|+|||.-
T Consensus 14 ~ki~v~G~~~vGKSsl 29 (223)
T 3cpj_B 14 FKIVLIGDSGVGKSNL 29 (223)
T ss_dssp EEEEEESCTTSSHHHH
T ss_pred eEEEEECcCCCCHHHH
Confidence 4567789999999863
No 491
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=24.76 E-value=29 Score=22.25 Aligned_cols=20 Identities=20% Similarity=0.185 Sum_probs=14.0
Q ss_pred CCcEEEEeecCCCCCCceEe
Q psy12526 75 GYNACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 75 G~n~ti~aYGqtgSGKT~Tm 94 (103)
.-..-|.-.|..|+|||.-+
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi 47 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLL 47 (204)
T ss_dssp --CEEEEEEESTTSSHHHHH
T ss_pred CCeEEEEEECcCCCCHHHHH
Confidence 33456778999999998533
No 492
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=24.07 E-value=23 Score=22.69 Aligned_cols=16 Identities=6% Similarity=0.063 Sum_probs=12.9
Q ss_pred EEEEeecCCCCCCceE
Q psy12526 78 ACIFAYGQTGEKTNYL 93 (103)
Q Consensus 78 ~ti~aYGqtgSGKT~T 93 (103)
.-|.-.|..|+|||.-
T Consensus 30 ~ki~vvG~~~vGKSsl 45 (201)
T 2hup_A 30 FKLVLVGDASVGKTCV 45 (201)
T ss_dssp EEEEEEECTTSSHHHH
T ss_pred eEEEEECcCCCCHHHH
Confidence 4577789999999863
No 493
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=24.03 E-value=26 Score=22.45 Aligned_cols=17 Identities=18% Similarity=0.217 Sum_probs=13.3
Q ss_pred cEEEEeecCCCCCCceE
Q psy12526 77 NACIFAYGQTGEKTNYL 93 (103)
Q Consensus 77 n~ti~aYGqtgSGKT~T 93 (103)
..-|.-.|..|+|||.-
T Consensus 23 ~~ki~vvG~~~vGKSsL 39 (195)
T 3cbq_A 23 IFKVMLVGESGVGKSTL 39 (195)
T ss_dssp EEEEEEECSTTSSHHHH
T ss_pred EEEEEEECCCCCCHHHH
Confidence 34567789999999863
No 494
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=23.94 E-value=17 Score=26.24 Aligned_cols=16 Identities=13% Similarity=0.179 Sum_probs=12.1
Q ss_pred EEEeecCCCCCCceEe
Q psy12526 79 CIFAYGQTGEKTNYLL 94 (103)
Q Consensus 79 ti~aYGqtgSGKT~Tm 94 (103)
.|---|.+|+|||..|
T Consensus 76 ~v~lvG~pgaGKSTLl 91 (349)
T 2www_A 76 RVGLSGPPGAGKSTFI 91 (349)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 4445699999998754
No 495
>1pfs_A PF3 SSDBP, PF3 single-stranded DNA binding protein; viral, bacteriophage PF3; NMR {Pseudomonas phage PF3} SCOP: b.40.4.7
Probab=23.81 E-value=26 Score=20.25 Aligned_cols=14 Identities=14% Similarity=0.363 Sum_probs=11.3
Q ss_pred eecCCCCCCceEec
Q psy12526 82 AYGQTGEKTNYLLN 95 (103)
Q Consensus 82 aYGqtgSGKT~Tm~ 95 (103)
--|-+-|||-|||+
T Consensus 12 RsGvsksg~pYtm~ 25 (78)
T 1pfs_A 12 RQGTSAKGNPYTFQ 25 (78)
T ss_dssp EEEECTTSCEEEEE
T ss_pred EecccccCCceEeE
Confidence 45667899999996
No 496
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=23.80 E-value=23 Score=26.65 Aligned_cols=26 Identities=12% Similarity=0.147 Sum_probs=18.4
Q ss_pred HHHHhhCCC--cEEEEeecCCCCCCceE
Q psy12526 68 ILDNAFQGY--NACIFAYGQTGEKTNYL 93 (103)
Q Consensus 68 lv~~~~~G~--n~ti~aYGqtgSGKT~T 93 (103)
-++.++.|+ ...++-.|.+|+|||.-
T Consensus 231 ~LD~~lgGl~~G~l~li~G~pG~GKT~l 258 (503)
T 1q57_A 231 GINDKTLGARGGEVIMVTSGSGMVMSTF 258 (503)
T ss_dssp THHHHHCCCCTTCEEEEEESSCHHHHHH
T ss_pred hhhHhhcccCCCeEEEEeecCCCCchHH
Confidence 356666555 33567789999999864
No 497
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=23.67 E-value=23 Score=30.43 Aligned_cols=22 Identities=14% Similarity=0.271 Sum_probs=15.0
Q ss_pred hhCCCcEEE------EeecCCCCCCceE
Q psy12526 72 AFQGYNACI------FAYGQTGEKTNYL 93 (103)
Q Consensus 72 ~~~G~n~ti------~aYGqtgSGKT~T 93 (103)
+|++.|.+| ---|.||||||.-
T Consensus 1094 VL~~isl~I~~Ge~vaIVG~SGsGKSTL 1121 (1321)
T 4f4c_A 1094 ILKGLSFSVEPGQTLALVGPSGCGKSTV 1121 (1321)
T ss_dssp SEEEEEEEECTTCEEEEECSTTSSTTSH
T ss_pred cccceeEEECCCCEEEEECCCCChHHHH
Confidence 466666554 2359999999863
No 498
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=23.54 E-value=24 Score=22.54 Aligned_cols=17 Identities=6% Similarity=-0.025 Sum_probs=13.3
Q ss_pred cEEEEeecCCCCCCceE
Q psy12526 77 NACIFAYGQTGEKTNYL 93 (103)
Q Consensus 77 n~ti~aYGqtgSGKT~T 93 (103)
..-|.-.|..|+|||.-
T Consensus 9 ~~ki~i~G~~~~GKTsl 25 (212)
T 2j0v_A 9 FIKCVTVGDGAVGKTCM 25 (212)
T ss_dssp EEEEEEEESTTSSHHHH
T ss_pred eEEEEEECCCCCCHHHH
Confidence 34567789999999864
No 499
>1ytm_A Phosphoenolpyruvate carboxykinase [ATP], phosphoenolpyruvate; domain closure, nucleotide binding; HET: ATP; 2.20A {Anaerobiospirillum succiniciproducens} PDB: 1yvy_A
Probab=23.14 E-value=28 Score=27.20 Aligned_cols=14 Identities=14% Similarity=0.313 Sum_probs=12.1
Q ss_pred EEEeecCCCCCCce
Q psy12526 79 CIFAYGQTGEKTNY 92 (103)
Q Consensus 79 ti~aYGqtgSGKT~ 92 (103)
+++-+|.+|+|||.
T Consensus 237 ~~~ffGlSGtGKTT 250 (532)
T 1ytm_A 237 TAIFFGLSGTGKTT 250 (532)
T ss_dssp EEEEECCTTSSHHH
T ss_pred EEEEEecCCCCHHH
Confidence 66778999999986
No 500
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=23.02 E-value=17 Score=26.09 Aligned_cols=17 Identities=18% Similarity=0.192 Sum_probs=12.5
Q ss_pred EEEEeecCCCCCCceEe
Q psy12526 78 ACIFAYGQTGEKTNYLL 94 (103)
Q Consensus 78 ~ti~aYGqtgSGKT~Tm 94 (103)
-.|.-.|..|+|||.++
T Consensus 57 ~~i~i~G~~g~GKSTl~ 73 (341)
T 2p67_A 57 LRLGVTGTPGAGKSTFL 73 (341)
T ss_dssp EEEEEEECTTSCHHHHH
T ss_pred EEEEEEcCCCCCHHHHH
Confidence 34445699999999754
Done!