RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy12526
(103 letters)
>gnl|CDD|238661 cd01365, KISc_KIF1A_KIF1B, Kinesin motor domain, KIF1_like
proteins. KIF1A (Unc104) transports synaptic vesicles to
the nerve terminal, KIF1B has been implicated in
transport of mitochondria. Both proteins are expressed
in neurons. This catalytic (head) domain has ATPase
activity and belongs to the larger group of P-loop
NTPases. Kinesins are microtubule-dependent molecular
motors that play important roles in intracellular
transport and in cell division. In most kinesins, the
motor domain is found at the N-terminus (N-type). N-type
kinesins are (+) end-directed motors, i.e. they
transport cargo towards the (+) end of the microtubule.
In contrast to the majority of dimeric kinesins, most
KIF1A/Unc104 kinesins are monomeric motors. A
lysine-rich loop in KIF1A binds to the negatively
charged C-terminus of tubulin and compensates for the
lack of a second motor domain, allowing KIF1A to move
processively.
Length = 356
Score = 108 bits (271), Expect = 1e-29
Identities = 40/94 (42%), Positives = 58/94 (61%), Gaps = 6/94 (6%)
Query: 16 QVRKQTTYLTGTGRSHL--KPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAF 73
Q+ + T L + K PK+F+FDH ++S D P++ASQE VF+ LGR++LD+AF
Sbjct: 26 QMPGKVTTLKNPKAADATRKKPKSFSFDHSYWSHDSEDPHYASQEDVFEDLGRELLDHAF 85
Query: 74 QGYNACIFAYGQTGEKTNYLL----NGNGPFPLI 103
+GYN C+FAYGQTG +Y + G P +
Sbjct: 86 EGYNVCLFAYGQTGSGKSYTMMGYKEEKGIIPRL 119
>gnl|CDD|238054 cd00106, KISc, Kinesin motor domain. This catalytic (head) domain
has ATPase activity and belongs to the larger group of
P-loop NTPases. Kinesins are microtubule-dependent
molecular motors that play important roles in
intracellular transport and in cell division. In most
kinesins, the motor domain is found at the N-terminus
(N-type), in some its is found in the middle (M-type),
or C-terminal (C-type). N-type and M-type kinesins are
(+) end-directed motors, while C-type kinesins are (-)
end-directed motors, i.e. they transport cargo towards
the (-) end of the microtubule. Kinesin motor domains
hydrolyze ATP at a rate of about 80 per second, and
move along the microtubule at a speed of about 6400
Angstroms per second. To achieve that, kinesin head
groups work in pairs. Upon replacing ADP with ATP, a
kinesin motor domain increases its affinity for
microtubule binding and locks in place. Also, the neck
linker binds to the motor domain, which repositions the
other head domain through the coiled-coil domain close
to a second tubulin dimer, about 80 Angstroms along the
microtubule. Meanwhile, ATP hydrolysis takes place, and
when the second head domain binds to the microtubule,
the first domain again replaces ADP with ATP,
triggering a conformational change that pulls the first
domain forward.
Length = 328
Score = 78.8 bits (195), Expect = 7e-19
Identities = 27/68 (39%), Positives = 39/68 (57%), Gaps = 7/68 (10%)
Query: 20 QTTYLTGTGRSHLKPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNAC 79
+T LT PK+F FDH F DPN ++QE V++ + ++++ +GYN
Sbjct: 29 KTVTLTPPKDGRKAGPKSFTFDHVF---DPN----STQEDVYETTAKPLVESVLEGYNGT 81
Query: 80 IFAYGQTG 87
IFAYGQTG
Sbjct: 82 IFAYGQTG 89
>gnl|CDD|215803 pfam00225, Kinesin, Kinesin motor domain.
Length = 326
Score = 78.4 bits (194), Expect = 9e-19
Identities = 28/68 (41%), Positives = 39/68 (57%), Gaps = 9/68 (13%)
Query: 33 KPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGE-KTN 91
KTF FD F DP A+QE V++ + ++++ +GYN IFAYGQTG KT
Sbjct: 37 GREKTFTFDRVF---DPE----ATQEFVYEETAKPLVESVLEGYNVTIFAYGQTGSGKT- 88
Query: 92 YLLNGNGP 99
Y + G+ P
Sbjct: 89 YTMEGDPP 96
>gnl|CDD|214526 smart00129, KISc, Kinesin motor, catalytic domain. ATPase.
Microtubule-dependent molecular motors that play
important roles in intracellular transport of
organelles and in cell division.
Length = 335
Score = 75.7 bits (187), Expect = 1e-17
Identities = 25/52 (48%), Positives = 30/52 (57%), Gaps = 7/52 (13%)
Query: 36 KTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTG 87
K F FD F D ASQE VF+ ++D+ +GYNA IFAYGQTG
Sbjct: 46 KKFTFDKVF---DAT----ASQEDVFEETAAPLVDSVLEGYNATIFAYGQTG 90
>gnl|CDD|238669 cd01373, KISc_KLP2_like, Kinesin motor domain, KLP2-like
subgroup. Members of this subgroup seem to play a role
in mitosis and meiosis. This catalytic (head) domain
has ATPase activity and belongs to the larger group of
P-loop NTPases. Kinesins are microtubule-dependent
molecular motors that play important roles in
intracellular transport and in cell division. In most
kinesins, the motor domain is found at the N-terminus
(N-type). N-type kinesins are (+) end-directed motors,
i.e. they transport cargo towards the (+) end of the
microtubule. Kinesin motor domains hydrolyze ATP at a
rate of about 80 per second, and move along the
microtubule at a speed of about 6400 Angstroms per
second. To achieve that, kinesin head groups work in
pairs. Upon replacing ADP with ATP, a kinesin motor
domain increases its affinity for microtubule binding
and locks in place. Also, the neck linker binds to the
motor domain, which repositions the other head domain
through the coiled-coil domain close to a second
tubulin dimer, about 80 Angstroms along the
microtubule. Meanwhile, ATP hydrolysis takes place, and
when the second head domain binds to the microtubule,
the first domain again replaces ADP with ATP,
triggering a conformational change that pulls the first
domain forward.
Length = 337
Score = 69.8 bits (171), Expect = 1e-15
Identities = 28/70 (40%), Positives = 38/70 (54%), Gaps = 7/70 (10%)
Query: 27 TGRSHLKPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQT 86
T H PP+ F FDH D N +QE VF ++G+ ++++ GYN IFAYGQT
Sbjct: 32 TLVWHSHPPRMFTFDHVA---DSNT----NQEDVFQSVGKPLVEDCLSGYNGSIFAYGQT 84
Query: 87 GEKTNYLLNG 96
G Y + G
Sbjct: 85 GSGKTYTMMG 94
>gnl|CDD|238667 cd01371, KISc_KIF3, Kinesin motor domain, kinesins II or KIF3_like
proteins. Subgroup of kinesins, which form heterotrimers
composed of 2 kinesins and one non-motor accessory
subunit. Kinesins II play important roles in ciliary
transport, and have been implicated in neuronal
transport, melanosome transport, the secretory pathway,
and mitosis. This catalytic (head) domain has ATPase
activity and belongs to the larger group of P-loop
NTPases. Kinesins are microtubule-dependent molecular
motors that play important roles in intracellular
transport and in cell division. In this group the motor
domain is found at the N-terminus (N-type). N-type
kinesins are (+) end-directed motors, i.e. they
transport cargo towards the (+) end of the microtubule.
Kinesin motor domains hydrolyze ATP at a rate of about
80 per second, and move along the microtubule at a speed
of about 6400 Angstroms per second. To achieve that,
kinesin head groups work in pairs. Upon replacing ADP
with ATP, a kinesin motor domain increases its affinity
for microtubule binding and locks in place. Also, the
neck linker binds to the motor domain, which repositions
the other head domain through the coiled-coil domain
close to a second tubulin dimer, about 80 Angstroms
along the microtubule. Meanwhile, ATP hydrolysis takes
place, and when the second head domain binds to the
microtubule, the first domain again replaces ADP with
ATP, triggering a conformational change that pulls the
first domain forward.
Length = 333
Score = 63.6 bits (155), Expect = 2e-13
Identities = 26/65 (40%), Positives = 38/65 (58%), Gaps = 7/65 (10%)
Query: 33 KPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNY 92
+PPK F FD + DPN ++QE V++ R ++D+ +GYN IFAYGQTG +
Sbjct: 45 EPPKVFTFDAVY---DPN----STQEDVYNETARPLVDSVLEGYNGTIFAYGQTGTGKTF 97
Query: 93 LLNGN 97
+ G
Sbjct: 98 TMEGV 102
>gnl|CDD|227392 COG5059, KIP1, Kinesin-like protein [Cytoskeleton].
Length = 568
Score = 62.1 bits (151), Expect = 1e-12
Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 8/57 (14%)
Query: 35 PKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTG-EKT 90
T+AFD F P+ A+QE V++ + ++D+ GYN +FAYGQTG KT
Sbjct: 55 EGTYAFDKVF---GPS----ATQEDVYEETIKPLIDSLLLGYNCTVFAYGQTGSGKT 104
>gnl|CDD|238665 cd01369, KISc_KHC_KIF5, Kinesin motor domain, kinesin heavy chain
(KHC) or KIF5-like subgroup. Members of this group have
been associated with organelle transport. This
catalytic (head) domain has ATPase activity and belongs
to the larger group of P-loop NTPases. Kinesins are
microtubule-dependent molecular motors that play
important roles in intracellular transport and in cell
division. In most kinesins, the motor domain is found
at the N-terminus (N-type). N-type kinesins are (+)
end-directed motors, i.e. they transport cargo towards
the (+) end of the microtubule. Kinesin motor domains
hydrolyze ATP at a rate of about 80 per second, and
move along the microtubule at a speed of about 6400
Angstroms per second. To achieve that, kinesin head
groups work in pairs. Upon replacing ADP with ATP, a
kinesin motor domain increases its affinity for
microtubule binding and locks in place. Also, the neck
linker binds to the motor domain, which repositions the
other head domain through the coiled-coil domain close
to a second tubulin dimer, about 80 Angstroms along the
microtubule. Meanwhile, ATP hydrolysis takes place, and
when the second head domain binds to the microtubule,
the first domain again replaces ADP with ATP,
triggering a conformational change that pulls the first
domain forward.
Length = 325
Score = 59.6 bits (145), Expect = 6e-12
Identities = 24/52 (46%), Positives = 32/52 (61%), Gaps = 7/52 (13%)
Query: 36 KTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTG 87
KTF+FD F PN +QE V++ + + I+D+ GYN IFAYGQTG
Sbjct: 43 KTFSFDRVFP------PN-TTQEDVYNFVAKPIVDDVLNGYNGTIFAYGQTG 87
>gnl|CDD|238668 cd01372, KISc_KIF4, Kinesin motor domain, KIF4-like subfamily.
Members of this group seem to perform a variety of
functions, and have been implicated in neuronal
organelle transport and chromosome segregation during
mitosis. This catalytic (head) domain has ATPase
activity and belongs to the larger group of P-loop
NTPases. Kinesins are microtubule-dependent molecular
motors that play important roles in intracellular
transport and in cell division. In most kinesins, the
motor domain is found at the N-terminus (N-type).
N-type kinesins are (+) end-directed motors, i.e. they
transport cargo towards the (+) end of the microtubule.
Kinesin motor domains hydrolyze ATP at a rate of about
80 per second, and move along the microtubule at a
speed of about 6400 Angstroms per second. To achieve
that, kinesin head groups work in pairs. Upon replacing
ADP with ATP, a kinesin motor domain increases its
affinity for microtubule binding and locks in place.
Also, the neck linker binds to the motor domain, which
repositions the other head domain through the
coiled-coil domain close to a second tubulin dimer,
about 80 Angstroms along the microtubule. Meanwhile,
ATP hydrolysis takes place, and when the second head
domain binds to the microtubule, the first domain again
replaces ADP with ATP, triggering a conformational
change that pulls the first domain forward.
Length = 341
Score = 59.2 bits (144), Expect = 8e-12
Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 8/74 (10%)
Query: 18 RKQTTYLTGTGRSHLKPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYN 77
+ + + G + + K+F FD+ F DP+ SQE+V++ ++D F+GYN
Sbjct: 22 QVCVSVVPGEPQVTVGTDKSFTFDYVF---DPS----TSQEEVYNTCVAPLVDGLFEGYN 74
Query: 78 ACIFAYGQTGE-KT 90
A + AYGQTG KT
Sbjct: 75 ATVLAYGQTGSGKT 88
>gnl|CDD|238670 cd01374, KISc_CENP_E, Kinesin motor domain, CENP-E/KIP2-like
subgroup, involved in chromosome movement and/or spindle
elongation during mitosis. This catalytic (head) domain
has ATPase activity and belongs to the larger group of
P-loop NTPases. Kinesins are microtubule-dependent
molecular motors that play important roles in
intracellular transport and in cell division. In most
kinesins, the motor domain is found at the N-terminus
(N-type). N-type kinesins are (+) end-directed motors,
i.e. they transport cargo towards the (+) end of the
microtubule. Kinesin motor domains hydrolyze ATP at a
rate of about 80 per second, and move along the
microtubule at a speed of about 6400 Angstroms per
second. To achieve that, kinesin head groups work in
pairs. Upon replacing ADP with ATP, a kinesin motor
domain increases its affinity for microtubule binding
and locks in place. Also, the neck linker binds to the
motor domain, which repositions the other head domain
through the coiled-coil domain close to a second tubulin
dimer, about 80 Angstroms along the microtubule.
Meanwhile, ATP hydrolysis takes place, and when the
second head domain binds to the microtubule, the first
domain again replaces ADP with ATP, triggering a
conformational change that pulls the first domain
forward.
Length = 321
Score = 56.9 bits (138), Expect = 5e-11
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 7/76 (9%)
Query: 28 GRSHLKPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTG 87
P ++F FD F N +V++ + + ++ +A +GYN IFAYGQT
Sbjct: 32 SLEESTPGQSFTFDRVF---GGESTN----REVYERIAKPVVRSALEGYNGTIFAYGQTS 84
Query: 88 EKTNYLLNGNGPFPLI 103
+ ++G+ P I
Sbjct: 85 SGKTFTMSGDEQEPGI 100
>gnl|CDD|238671 cd01375, KISc_KIF9_like, Kinesin motor domain, KIF9-like subgroup;
might play a role in cell shape remodeling. This
catalytic (head) domain has ATPase activity and belongs
to the larger group of P-loop NTPases. Kinesins are
microtubule-dependent molecular motors that play
important roles in intracellular transport and in cell
division. In most kinesins, the motor domain is found at
the N-terminus (N-type). N-type kinesins are (+)
end-directed motors, i.e. they transport cargo towards
the (+) end of the microtubule. Kinesin motor domains
hydrolyze ATP at a rate of about 80 per second, and move
along the microtubule at a speed of about 6400 Angstroms
per second. To achieve that, kinesin head groups work in
pairs. Upon replacing ADP with ATP, a kinesin motor
domain increases its affinity for microtubule binding
and locks in place. Also, the neck linker binds to the
motor domain, which repositions the other head domain
through the coiled-coil domain close to a second tubulin
dimer, about 80 Angstroms along the microtubule.
Meanwhile, ATP hydrolysis takes place, and when the
second head domain binds to the microtubule, the first
domain again replaces ADP with ATP, triggering a
conformational change that pulls the first domain
forward.
Length = 334
Score = 57.1 bits (138), Expect = 5e-11
Identities = 23/62 (37%), Positives = 36/62 (58%), Gaps = 8/62 (12%)
Query: 37 TFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLNG 96
+F FD F++ ASQE+V++ + + ++D+A GYN IFAYGQTG + + G
Sbjct: 49 SFKFDGVFHN--------ASQEEVYETVAKPVVDSALDGYNGTIFAYGQTGAGKTFTMTG 100
Query: 97 NG 98
Sbjct: 101 GT 102
>gnl|CDD|238662 cd01366, KISc_C_terminal, Kinesin motor domain,
KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is
a spindle motor protein necessary for chromosome
segregation in meiosis. KIFC2/KIFC3-like kinesins have
been implicated in motility of the Golgi apparatus as
well as dentritic and axonal transport in neurons. This
catalytic (head) domain has ATPase activity and belongs
to the larger group of P-loop NTPases. Kinesins are
microtubule-dependent molecular motors that play
important roles in intracellular transport and in cell
division. In this subgroup the motor domain is found at
the C-terminus (C-type). C-type kinesins are (-)
end-directed motors, i.e. they transport cargo towards
the (-) end of the microtubule. Kinesin motor domains
hydrolyze ATP at a rate of about 80 per second, and
move along the microtubule at a speed of about 6400
Angstroms per second. To achieve that, kinesin head
groups work in pairs. Upon replacing ADP with ATP, a
kinesin motor domain increases its affinity for
microtubule binding and locks in place. Also, the neck
linker binds to the motor domain, which repositions the
other head domain through the coiled-coil domain close
to a second tubulin dimer, about 80 Angstroms along the
microtubule. Meanwhile, ATP hydrolysis takes place, and
when the second head domain binds to the microtubule,
the first domain again replaces ADP with ATP,
triggering a conformational change that pulls the first
domain forward.
Length = 329
Score = 55.7 bits (135), Expect = 1e-10
Identities = 28/57 (49%), Positives = 36/57 (63%), Gaps = 9/57 (15%)
Query: 35 PKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGE-KT 90
K+F+FD F DP+ ASQE VF+ + ++ +A GYN CIFAYGQTG KT
Sbjct: 44 KKSFSFDRVF---DPD----ASQEDVFEEVSP-LVQSALDGYNVCIFAYGQTGSGKT 92
>gnl|CDD|238660 cd01364, KISc_BimC_Eg5, Kinesin motor domain, BimC/Eg5 spindle pole
proteins, participate in spindle assembly and chromosome
segregation during cell division. This catalytic (head)
domain has ATPase activity and belongs to the larger
group of P-loop NTPases. Kinesins are
microtubule-dependent molecular motors that play
important roles in intracellular transport and in cell
division. In most kinesins, the motor domain is found at
the N-terminus (N-type), N-type kinesins are (+)
end-directed motors, i.e. they transport cargo towards
the (+) end of the microtubule. Kinesin motor domains
hydrolyze ATP at a rate of about 80 per second, and move
along the microtubule at a speed of about 6400 Angstroms
per second. To achieve that, kinesin head groups work in
pairs. Upon replacing ADP with ATP, a kinesin motor
domain increases its affinity for microtubule binding
and locks in place. Also, the neck linker binds to the
motor domain, which repositions the other head domain
through the coiled-coil domain close to a second tubulin
dimer, about 80 Angstroms along the microtubule.
Meanwhile, ATP hydrolysis takes place, and when the
second head domain binds to the microtubule, the first
domain again replaces ADP with ATP, triggering a
conformational change that pulls the first domain
forward.
Length = 352
Score = 55.0 bits (133), Expect = 3e-10
Identities = 28/85 (32%), Positives = 35/85 (41%), Gaps = 9/85 (10%)
Query: 13 TAKQVRKQTTYLTGTGRSHLKPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNA 72
K+ TG KT+ FD F P A Q +V+ + ILD
Sbjct: 27 EVSGSSKEIIVSTGGADKQST--KTYTFDKVF---GP----EADQIEVYSQVVSPILDEV 77
Query: 73 FQGYNACIFAYGQTGEKTNYLLNGN 97
GYN IFAYGQTG Y + G+
Sbjct: 78 LMGYNCTIFAYGQTGTGKTYTMEGD 102
>gnl|CDD|238666 cd01370, KISc_KIP3_like, Kinesin motor domain, KIP3-like
subgroup. The yeast kinesin KIP3 plays a role in
positioning the mitotic spindle. This catalytic (head)
domain has ATPase activity and belongs to the larger
group of P-loop NTPases. Kinesins are
microtubule-dependent molecular motors that play
important roles in intracellular transport and in cell
division. In most kinesins, the motor domain is found
at the N-terminus (N-type). N-type kinesins are (+)
end-directed motors, i.e. they transport cargo towards
the (+) end of the microtubule. Kinesin motor domains
hydrolyze ATP at a rate of about 80 per second, and
move along the microtubule at a speed of about 6400
Angstroms per second. To achieve that, kinesin head
groups work in pairs. Upon replacing ADP with ATP, a
kinesin motor domain increases its affinity for
microtubule binding and locks in place. Also, the neck
linker binds to the motor domain, which repositions the
other head domain through the coiled-coil domain close
to a second tubulin dimer, about 80 Angstroms along the
microtubule. Meanwhile, ATP hydrolysis takes place, and
when the second head domain binds to the microtubule,
the first domain again replaces ADP with ATP,
triggering a conformational change that pulls the first
domain forward.
Length = 338
Score = 55.0 bits (133), Expect = 3e-10
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 7/53 (13%)
Query: 35 PKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTG 87
++FD F D ++QE+V++ + ++D GYNA +FAYG TG
Sbjct: 53 ELKYSFDRVF---DET----STQEEVYENTTKPLVDGVLNGYNATVFAYGATG 98
>gnl|CDD|238663 cd01367, KISc_KIF2_like, Kinesin motor domain, KIF2-like group.
KIF2 is a protein expressed in neurons, which has been
associated with axonal transport and neuron development;
alternative splice forms have been implicated in
lysosomal translocation. This catalytic (head) domain
has ATPase activity and belongs to the larger group of
P-loop NTPases. Kinesins are microtubule-dependent
molecular motors that play important roles in
intracellular transport and in cell division. In this
subgroup the motor domain is found in the middle
(M-type) of the protein chain. M-type kinesins are (+)
end-directed motors, i.e. they transport cargo towards
the (+) end of the microtubule. Kinesin motor domains
hydrolyze ATP at a rate of about 80 per second, and move
along the microtubule at a speed of about 6400 Angstroms
per second (KIF2 may be slower). To achieve that,
kinesin head groups work in pairs. Upon replacing ADP
with ATP, a kinesin motor domain increases its affinity
for microtubule binding and locks in place. Also, the
neck linker binds to the motor domain, which repositions
the other head domain through the coiled-coil domain
close to a second tubulin dimer, about 80 Angstroms
along the microtubule. Meanwhile, ATP hydrolysis takes
place, and when the second head domain binds to the
microtubule, the first domain again replaces ADP with
ATP, triggering a conformational change that pulls the
first domain forward.
Length = 322
Score = 43.8 bits (104), Expect = 2e-06
Identities = 28/100 (28%), Positives = 40/100 (40%), Gaps = 18/100 (18%)
Query: 2 PSRDTTRVYLPTAKQVRKQTTYLTGTGRSHLKPPKTFAFDHCFYSLDPNLPNFASQEKVF 61
S T V+ P K LT H TF FD+ F N E+V+
Sbjct: 28 ESNPTVTVHEP------KTKVDLTKYIEKH-----TFRFDYVFDEAVTN-------EEVY 69
Query: 62 DALGRDILDNAFQGYNACIFAYGQTGEKTNYLLNGNGPFP 101
+ + ++ + F+G A FAYGQTG Y + G+
Sbjct: 70 RSTVKPLIPHVFEGGVATCFAYGQTGSGKTYTMLGDENQE 109
>gnl|CDD|215621 PLN03188, PLN03188, kinesin-12 family protein; Provisional.
Length = 1320
Score = 43.4 bits (102), Expect = 3e-06
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 7/61 (11%)
Query: 36 KTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLN 95
+TF FD DP ++QE +F +G +++N G+N+ +FAYGQTG Y +
Sbjct: 132 QTFTFDSI---ADPE----STQEDIFQLVGAPLVENCLAGFNSSVFAYGQTGSGKTYTMW 184
Query: 96 G 96
G
Sbjct: 185 G 185
>gnl|CDD|238672 cd01376, KISc_KID_like, Kinesin motor domain, KIF22/Kid-like
subgroup. Members of this group might play a role in
regulating chromosomal movement along microtubules in
mitosis. This catalytic (head) domain has ATPase
activity and belongs to the larger group of P-loop
NTPases. Kinesins are microtubule-dependent molecular
motors that play important roles in intracellular
transport and in cell division. In most kinesins, the
motor domain is found at the N-terminus (N-type). N-type
kinesins are (+) end-directed motors, i.e. they
transport cargo towards the (+) end of the microtubule.
Kinesin motor domains hydrolyze ATP at a rate of about
80 per second, and move along the microtubule at a speed
of about 6400 Angstroms per second. To achieve that,
kinesin head groups work in pairs. Upon replacing ADP
with ATP, a kinesin motor domain increases its affinity
for microtubule binding and locks in place. Also, the
neck linker binds to the motor domain, which repositions
the other head domain through the coiled-coil domain
close to a second tubulin dimer, about 80 Angstroms
along the microtubule. Meanwhile, ATP hydrolysis takes
place, and when the second head domain binds to the
microtubule, the first domain again replaces ADP with
ATP, triggering a conformational change that pulls the
first domain forward.
Length = 319
Score = 40.1 bits (94), Expect = 5e-05
Identities = 14/43 (32%), Positives = 23/43 (53%)
Query: 55 ASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLNGN 97
+QE +F + I+ + G NA +FAYG TG + + G+
Sbjct: 59 CTQEDIFSREVKPIVPHLLSGQNATVFAYGSTGAGKTHTMLGD 101
>gnl|CDD|238659 cd01363, Motor_domain, Myosin and Kinesin motor domain. These
ATPases belong to the P-loop NTPase family and provide
the driving force in myosin and kinesin mediated
processes.
Length = 186
Score = 39.4 bits (92), Expect = 5e-05
Identities = 16/32 (50%), Positives = 19/32 (59%)
Query: 68 ILDNAFQGYNACIFAYGQTGEKTNYLLNGNGP 99
+L +A GYN CIFAYGQTG Y + G
Sbjct: 15 LLQSALDGYNVCIFAYGQTGSGKTYTMEGKRE 46
>gnl|CDD|238664 cd01368, KISc_KIF23_like, Kinesin motor domain, KIF23-like
subgroup. Members of this group may play a role in
mitosis. This catalytic (head) domain has ATPase
activity and belongs to the larger group of P-loop
NTPases. Kinesins are microtubule-dependent molecular
motors that play important roles in intracellular
transport and in cell division. In most kinesins, the
motor domain is found at the N-terminus (N-type). N-type
kinesins are (+) end-directed motors, i.e. they
transport cargo towards the (+) end of the microtubule.
Kinesin motor domains hydrolyze ATP at a rate of about
80 per second, and move along the microtubule at a speed
of about 6400 Angstroms per second. To achieve that,
kinesin head groups work in pairs. Upon replacing ADP
with ATP, a kinesin motor domain increases its affinity
for microtubule binding and locks in place. Also, the
neck linker binds to the motor domain, which repositions
the other head domain through the coiled-coil domain
close to a second tubulin dimer, about 80 Angstroms
along the microtubule. Meanwhile, ATP hydrolysis takes
place, and when the second head domain binds to the
microtubule, the first domain again replaces ADP with
ATP, triggering a conformational change that pulls the
first domain forward.
Length = 345
Score = 33.1 bits (76), Expect = 0.015
Identities = 15/64 (23%), Positives = 28/64 (43%), Gaps = 7/64 (10%)
Query: 34 PPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYL 93
F+F F PN +Q++ F+ ++ + +G N+ +F YG T Y
Sbjct: 53 KETKFSFSKVF---GPN----TTQKEFFEGTALPLVQDLLKGKNSLLFTYGVTNSGKTYT 105
Query: 94 LNGN 97
+ G+
Sbjct: 106 MQGS 109
>gnl|CDD|178320 PLN02718, PLN02718, Probable galacturonosyltransferase.
Length = 603
Score = 29.5 bits (66), Expect = 0.28
Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 18/63 (28%)
Query: 13 TAKQVR---KQTTYLTG-TGRSHLKPPKTFAFDHC--------FYSLDPNLPNFASQEKV 60
T +QVR Q YL R+ PK HC +++LDP +Q++
Sbjct: 255 TEEQVRAQKNQAAYLMQLAART---TPKGL---HCLSMRLTAEYFALDPEKRQLPNQQRY 308
Query: 61 FDA 63
D
Sbjct: 309 NDP 311
>gnl|CDD|184907 PRK14943, PRK14943, DNA polymerase III subunit beta; Provisional.
Length = 374
Score = 29.1 bits (65), Expect = 0.35
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 7/48 (14%)
Query: 49 PNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLNG 96
P LP+F Q VF L + L + + Y Q+ ++T Y+LNG
Sbjct: 116 PPLPSF-EQATVFQ-LEQSELRDMLKS-----VEYAQSTDETRYILNG 156
>gnl|CDD|233177 TIGR00901, 2A0125, AmpG-like permease. [Cellular processes,
Adaptations to atypical conditions].
Length = 356
Score = 27.7 bits (62), Expect = 1.2
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Query: 55 ASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLNGNG 98
A+Q+ DA +IL + GY + I+ G LL+G+
Sbjct: 98 ATQDIALDAWRLEILSDEELGYGSTIYIVGYR---AGMLLSGSL 138
>gnl|CDD|111000 pfam02057, Glyco_hydro_59, Glycosyl hydrolase family 59.
Length = 669
Score = 27.7 bits (61), Expect = 1.3
Identities = 17/49 (34%), Positives = 21/49 (42%), Gaps = 7/49 (14%)
Query: 21 TTYLTGTGRSHLKPPKTFAFDHCF-------YSLDPNLPNFASQEKVFD 62
TT TG S+ PPK+ F + Y PNFA Q VF+
Sbjct: 451 TTLTTGRKGSYPLPPKSKPFPTNYKDDFNVDYPFFSEAPNFADQTGVFE 499
>gnl|CDD|148296 pfam06603, UpxZ, UpxZ family of transcription anti-terminator
antagonists. The UpxZ family of proteins acts to
inhibit transcription of heterologous capsular
polysaccharide loci in Bacteroides species by
interfering with the action of the UpxY family of
transcription anti-terminators. As antagonists of
polysaccharide locus-specific UpxY transcription
anti-terminators, the UpxZ proteins exert a
hierarchical level of regulation, insuring that only
one of the multiple phase-variable capsular
polysaccharide loci per cell characteristic of this
genus is transcribed at a time.
Length = 106
Score = 26.1 bits (58), Expect = 2.3
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 73 FQGYNACIFAYGQTGEKTNYLLN 95
GYNA I+ G+ EK +L+
Sbjct: 60 LMGYNATIYNNGEKEEKKQVVLD 82
>gnl|CDD|215443 PLN02829, PLN02829, Probable galacturonosyltransferase.
Length = 639
Score = 26.7 bits (59), Expect = 2.6
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 13/53 (24%)
Query: 18 RKQTTYLTGTGRSHLKPPKTFAFDHC--------FYSLDPNLPNFASQEKVFD 62
+KQT +LT L PK HC +Y+L+ + F +QEK+ D
Sbjct: 281 KKQTMFLTQLTAKTL--PKGL---HCLPLRLTTEYYNLNSSEQQFPNQEKLED 328
>gnl|CDD|227664 COG5371, COG5371, Golgi nucleoside diphosphatase [Carbohydrate
transport and metabolism / Posttranslational
modification, protein turnover, chaperones].
Length = 549
Score = 26.4 bits (58), Expect = 3.0
Identities = 14/65 (21%), Positives = 19/65 (29%), Gaps = 8/65 (12%)
Query: 28 GRSHLKPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTG 87
+SHLK FA + P+LP A L +D C +
Sbjct: 70 EKSHLKELLDFAKNIIPEKTMPSLPVLAGATAAMRLLSQDSQP--------CSLIHLCQY 121
Query: 88 EKTNY 92
K
Sbjct: 122 VKMID 126
>gnl|CDD|183498 PRK12395, PRK12395, maltoporin; Provisional.
Length = 419
Score = 26.5 bits (58), Expect = 3.0
Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 9/63 (14%)
Query: 45 YSLDPNLPNFASQEK----VFDA-----LGRDILDNAFQGYNACIFAYGQTGEKTNYLLN 95
+D +PN Q+K ++DA L +I + F GYN + Y G N +
Sbjct: 210 VGIDYAMPNPTKQQKEYGGLYDADNAVMLTGEISQDMFGGYNKLVLQYANKGLAQNMISQ 269
Query: 96 GNG 98
G G
Sbjct: 270 GGG 272
>gnl|CDD|133148 cd05481, retropepsin_like_LTR_1, Retropepsins_like_LTR;
pepsin-like aspartate protease from retrotransposons
with long terminal repeats. Retropepsin of
retrotransposons with long terminal repeats are
pepsin-like aspartate proteases. While fungal and
mammalian pepsins are bilobal proteins with
structurally related N and C-terminals, retropepsins
are half as long as their fungal and mammalian
counterparts. The monomers are structurally related to
one lobe of the pepsin molecule and retropepsins
function as homodimers. The active site aspartate
occurs within a motif (Asp-Thr/Ser-Gly), as it does in
pepsin. Retroviral aspartyl protease is synthesized as
part of the POL polyprotein that contains an aspartyl
protease, a reverse transcriptase, RNase H, and an
integrase. The POL polyprotein undergoes specific
enzymatic cleavage to yield the mature proteins. In
aspartate peptidases, Asp residues are ligands of an
activated water molecule in all examples where
catalytic residues have been identified. This group of
aspartate peptidases is classified by MEROPS as the
peptidase family A2 (retropepsin family, clan AA),
subfamily A2A.
Length = 93
Score = 24.9 bits (55), Expect = 4.7
Identities = 7/37 (18%), Positives = 12/37 (32%)
Query: 1 MPSRDTTRVYLPTAKQVRKQTTYLTGTGRSHLKPPKT 37
+P R + ++R LT G S +
Sbjct: 24 LPLRWLKSLTPDKDPELRPSPVRLTAYGGSTIPVEGG 60
>gnl|CDD|182898 PRK11010, ampG, muropeptide transporter; Validated.
Length = 491
Score = 25.0 bits (55), Expect = 8.2
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 55 ASQEKVFDALGRDILDNAFQGYNACIFAYG 84
ASQ+ VFDA D+L +G A I G
Sbjct: 122 ASQDIVFDAWKTDVLPAEERGAGAAISVLG 151
>gnl|CDD|183369 PRK11902, ampG, muropeptide transporter; Reviewed.
Length = 402
Score = 25.2 bits (55), Expect = 8.9
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 55 ASQEKVFDALGRDILDNAFQGYNACIFAYG 84
ASQ+ VFDA D+L +G A + G
Sbjct: 109 ASQDIVFDAYSTDVLHPEERGAGAAVKVLG 138
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.139 0.431
Gapped
Lambda K H
0.267 0.0794 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,232,859
Number of extensions: 425264
Number of successful extensions: 324
Number of sequences better than 10.0: 1
Number of HSP's gapped: 316
Number of HSP's successfully gapped: 37
Length of query: 103
Length of database: 10,937,602
Length adjustment: 69
Effective length of query: 34
Effective length of database: 7,877,176
Effective search space: 267823984
Effective search space used: 267823984
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.1 bits)