RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12526
(103 letters)
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain,
ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora
crassa}
Length = 443
Score = 110 bits (276), Expect = 4e-30
Identities = 31/86 (36%), Positives = 48/86 (55%), Gaps = 4/86 (4%)
Query: 2 PSRDTTRVYLPTAKQVRKQTTYLTGTGRSHLKPPKTFAFDHCFYSLDPNLPNFASQEKVF 61
P+ + T + +P G + K+F FD F+S + ++A+QE V+
Sbjct: 66 PATERTSLLVPQETDFADAR----GARSRRVLEEKSFTFDKSFWSHNTEDEHYATQEHVY 121
Query: 62 DALGRDILDNAFQGYNACIFAYGQTG 87
D+LG + LD+ F+GY+ CIFAYGQTG
Sbjct: 122 DSLGEEFLDHNFEGYHTCIFAYGQTG 147
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics,
structural genomics consortium, SGC, ATP-binding,
microtubule, motor protein; HET: ADP; 2.10A {Homo
sapiens}
Length = 354
Score = 104 bits (261), Expect = 2e-28
Identities = 36/78 (46%), Positives = 45/78 (57%), Gaps = 6/78 (7%)
Query: 16 QVRKQTTYLT-----GTGRSHLKPPKTFAFDHCFYSLDPNL-PNFASQEKVFDALGRDIL 69
V L + PK FA+DHCF+S+D ++ +A Q+ VF LG +IL
Sbjct: 26 DVDANKVILNPVNTNLSKGDARGQPKVFAYDHCFWSMDESVKEKYAGQDIVFKCLGENIL 85
Query: 70 DNAFQGYNACIFAYGQTG 87
NAF GYNACIFAYGQTG
Sbjct: 86 QNAFDGYNACIFAYGQTG 103
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha
and beta protein, enzyme, ATPase, P-loop, motor protein,
ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus}
SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A*
2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C*
1ia0_K* 2hxh_C*
Length = 366
Score = 104 bits (261), Expect = 2e-28
Identities = 31/73 (42%), Positives = 49/73 (67%), Gaps = 2/73 (2%)
Query: 16 QVRKQTTYLTGTGRSHLKPPKTFAFDHCFYSLD-PNLPNFASQEKVFDALGRDILDNAFQ 74
Q+ TT + + + PK+F+FD+ ++S P N+ASQ++V+ +G ++L +AF+
Sbjct: 29 QMSGSTTTIVNPKQPK-ETPKSFSFDYSYWSHTSPEDINYASQKQVYRDIGEEMLQHAFE 87
Query: 75 GYNACIFAYGQTG 87
GYN CIFAYGQTG
Sbjct: 88 GYNVCIFAYGQTG 100
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor
domain, ADP, SGC, ATP-binding, coiled coil, microtubule,
motor protein; HET: ADP; 1.80A {Homo sapiens} PDB:
3b6v_A*
Length = 372
Score = 91.5 bits (228), Expect = 1e-23
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 7/69 (10%)
Query: 19 KQTTYLTGTGRSHLKPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNA 78
+ + + PKTF FD + A Q +++D R ++D+ QG+N
Sbjct: 51 LGQVSVKNPKGTAHEMPKTFTFDAVY-------DWNAKQFELYDETFRPLVDSVLQGFNG 103
Query: 79 CIFAYGQTG 87
IFAYGQTG
Sbjct: 104 TIFAYGQTG 112
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding,
microtubule binding, ATP- cell projection, cytoskeleton,
glycoprotein, microtubule; HET: ADP; 2.20A {Homo
sapiens}
Length = 355
Score = 90.0 bits (224), Expect = 4e-23
Identities = 20/85 (23%), Positives = 30/85 (35%), Gaps = 9/85 (10%)
Query: 5 DTTRVYLPTAKQV--RKQTTYLTGTGRSHLKPPKTFAFDHCFYSLDPNLPNFASQEKVFD 62
V+ P ++V F FD F ++Q +VF+
Sbjct: 39 KHILVFDPKQEEVSFFHGKKTTNQNVIKKQNKDLKFVFDAVF-------DETSTQSEVFE 91
Query: 63 ALGRDILDNAFQGYNACIFAYGQTG 87
+ IL + GYN + AYG TG
Sbjct: 92 HTTKPILRSFLNGYNCTVLAYGATG 116
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule,
ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Length = 350
Score = 88.8 bits (221), Expect = 9e-23
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 7/76 (9%)
Query: 12 PTAKQVRKQTTYLTGTGRSHLKPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDN 71
+ QV + K P+TF FD + D + +F A + ++D
Sbjct: 32 EASAQVIVDPPEQEKSATQAKKVPRTFTFDAVY---DQT----SCNYGIFQASFKPLIDA 84
Query: 72 AFQGYNACIFAYGQTG 87
+G+N+ IFAYGQTG
Sbjct: 85 VLEGFNSTIFAYGQTG 100
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP
complex, stranded beta-sheet core with solvent exposed
alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Length = 349
Score = 88.4 bits (220), Expect = 1e-22
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 7/61 (11%)
Query: 27 TGRSHLKPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQT 86
+ K+F FD F+ + + V++ + I+D+A QGYN IFAYGQT
Sbjct: 35 NVIYQVDGSKSFNFDRVFHG-------NETTKNVYEEIAAPIIDSAIQGYNGTIFAYGQT 87
Query: 87 G 87
Sbjct: 88 A 88
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain;
HET: ADP; 1.60A {Homo sapiens} PDB: 2xt3_A*
Length = 344
Score = 88.0 bits (219), Expect = 2e-22
Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 7/62 (11%)
Query: 26 GTGRSHLKPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQ 85
G GR L + F F + A QE V+ A + +L+ F+G+NA +FAYGQ
Sbjct: 40 GLGRVTLGRDRHFGFHVVL---AED----AGQEAVYQACVQPLLEAFFEGFNATVFAYGQ 92
Query: 86 TG 87
TG
Sbjct: 93 TG 94
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP;
2.3A {Neurospora crassa} SCOP: c.37.1.9
Length = 355
Score = 88.0 bits (219), Expect = 2e-22
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 7/55 (12%)
Query: 33 KPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTG 87
+ +F FD F Q +FD + +D+ GYN +FAYGQTG
Sbjct: 44 EAQGSFTFDRVFDM-------SCKQSDIFDFSIKPTVDDILNGYNGTVFAYGQTG 91
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule,
ADP, nucleotide-binding protein, ATP-binding, coiled
coil, motor protein; HET: ADP; 1.90A {Drosophila
melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Length = 344
Score = 87.3 bits (217), Expect = 4e-22
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 7/63 (11%)
Query: 25 TGTGRSHLKPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYG 84
G+S + F FDH F P SQ++++ AL ++D +G+ AYG
Sbjct: 50 WSDGKSLIVDQNEFHFDHAF-------PATISQDEMYQALILPLVDKLLEGFQCTALAYG 102
Query: 85 QTG 87
QTG
Sbjct: 103 QTG 105
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker,
cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP:
c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A*
2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A*
2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A*
1q0b_A* ...
Length = 359
Score = 86.9 bits (216), Expect = 5e-22
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 7/69 (10%)
Query: 19 KQTTYLTGTGRSHLKPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNA 78
++ + G + KT+ FD F + Q V+ ++ ILD GYN
Sbjct: 38 RKEVSVRTGGLADKSSRKTYTFDMVFGA-------STKQIDVYRSVVCPILDEVIMGYNC 90
Query: 79 CIFAYGQTG 87
IFAYGQTG
Sbjct: 91 TIFAYGQTG 99
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics,
structural genomics consortium, SGC, contractIle
protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Length = 358
Score = 84.6 bits (210), Expect = 3e-21
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 9/59 (15%)
Query: 33 KPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGE-KT 90
+ +F D + ASQ+ V++ + +D++ A GYN I YGQTG KT
Sbjct: 68 QTDWSFKLDGVL--------HDASQDLVYETVAKDVVSQALDGYNGTIMCYGQTGAGKT 118
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A
{Drosophila melanogaster} PDB: 2y5w_A*
Length = 365
Score = 84.2 bits (209), Expect = 5e-21
Identities = 25/59 (42%), Positives = 31/59 (52%), Gaps = 8/59 (13%)
Query: 33 KPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGE-KT 90
K + FD F PN ASQEKV++ + I+ + GYN IFAYGQT KT
Sbjct: 48 IAGKVYLFDKVF---KPN----ASQEKVYNEAAKSIVTDVLAGYNGTIFAYGQTSSGKT 99
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP;
1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K*
1mkj_A* 2kin_A* 3kin_A*
Length = 325
Score = 83.0 bits (206), Expect = 9e-21
Identities = 23/58 (39%), Positives = 31/58 (53%), Gaps = 8/58 (13%)
Query: 34 PPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGE-KT 90
K +AFD F S SQE+V++ + I+ + +GYN IFAYGQT KT
Sbjct: 42 ASKPYAFDRVFQS-------STSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKT 92
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis,
GTP-binding, motor protein, cell division, cell cycle,
microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A
{Drosophila melanogaster}
Length = 373
Score = 83.4 bits (207), Expect = 1e-20
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 8/59 (13%)
Query: 33 KPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGE-KT 90
K K F FD F P + Q V+ + +++ GYN +FAYGQTG KT
Sbjct: 64 KLTKKFTFDRSF---GPE----SKQCDVYSVVVSPLIEEVLNGYNCTVFAYGQTGTGKT 115
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural
genomics consortium domain, ADP, SGC, ATP-binding,
DNA-binding, microtubule, MO protein; HET: ADP; 2.30A
{Homo sapiens}
Length = 388
Score = 83.5 bits (207), Expect = 1e-20
Identities = 13/55 (23%), Positives = 25/55 (45%), Gaps = 7/55 (12%)
Query: 33 KPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTG 87
+ + FD + ++Q+ ++ + IL + +G NA + AYG TG
Sbjct: 62 QETLKYQFDAFY---GER----STQQDIYAGSVQPILRHLLEGQNASVLAYGPTG 109
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P;
HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB:
1v8j_A* 2gry_A*
Length = 410
Score = 82.3 bits (204), Expect = 4e-20
Identities = 25/87 (28%), Positives = 34/87 (39%), Gaps = 18/87 (20%)
Query: 1 MPSRDTTRVYLPTAKQVRKQTTYLTGTGRSHLKPPKTFAFDHCFYSLDPNLPNFASQEKV 60
+PS+ V+ P K + + F FD F D AS E V
Sbjct: 97 VPSKCLLLVHEPKLKV-----------DLTKYLENQAFCFDFAF---DET----ASNEVV 138
Query: 61 FDALGRDILDNAFQGYNACIFAYGQTG 87
+ R ++ F+G A FAYGQTG
Sbjct: 139 YRFTARPLVQTIFEGGKATCFAYGQTG 165
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics,
structural genomics consortium, SGC, structural protein;
HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Length = 387
Score = 81.9 bits (203), Expect = 5e-20
Identities = 25/87 (28%), Positives = 34/87 (39%), Gaps = 18/87 (20%)
Query: 1 MPSRDTTRVYLPTAKQVRKQTTYLTGTGRSHLKPPKTFAFDHCFYSLDPNLPNFASQEKV 60
+PS+ V+ P K + + F FD F D AS E V
Sbjct: 77 IPSKCLLLVHEPKLKV-----------DLTKYLENQAFCFDFAF---DET----ASNEVV 118
Query: 61 FDALGRDILDNAFQGYNACIFAYGQTG 87
+ R ++ F+G A FAYGQTG
Sbjct: 119 YRFTARPLVQTIFEGGKATCFAYGQTG 145
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing
nucleosi triphosphate hydrolases, microtubule motor
protein; HET: ADP; 2.35A {Ashbya gossypii}
Length = 349
Score = 77.6 bits (192), Expect = 1e-18
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 8/55 (14%)
Query: 33 KPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTG 87
F FD F +P+ + +++F+ + R ++ ++ GYN CIFAYGQTG
Sbjct: 50 ILSYNFQFDMIF---EPS----HTNKEIFEEI-RQLVQSSLDGYNVCIFAYGQTG 96
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor
domain, ADP, binding, cell cycle, cell division,
endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Length = 376
Score = 76.6 bits (189), Expect = 4e-18
Identities = 24/87 (27%), Positives = 34/87 (39%), Gaps = 8/87 (9%)
Query: 1 MPSRDTTRVYLPTAKQVRKQTTYLTGTGRSHLKPPKTFAFDHCFYSLDPNLPNFASQEKV 60
R T +G P F+FD F P + Q++V
Sbjct: 48 PSGPGGPSDPPTRLSLSRSDERRGTLSGAPAPPPRHDFSFDRVF---PPG----SGQDEV 100
Query: 61 FDALGRDILDNAFQGYNACIFAYGQTG 87
F+ + ++ +A GY CIFAYGQTG
Sbjct: 101 FEEI-AMLVQSALDGYPVCIFAYGQTG 126
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor
protein, microtubinding proteinbule, contractIle
protein; HET: ADP; 1.30A {Saccharomyces cerevisiae}
SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Length = 347
Score = 76.1 bits (188), Expect = 4e-18
Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 8/64 (12%)
Query: 24 LTGTGRSHLKPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAY 83
+ T + F FD F D + VF +G ++ ++ GYN CIFAY
Sbjct: 40 MEVTKIQNTAQVHEFKFDKIF---DQQ----DTNVDVFKEVG-QLVQSSLDGYNVCIFAY 91
Query: 84 GQTG 87
GQTG
Sbjct: 92 GQTG 95
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11,
conformation, nucleotide, ATP-binding, microtubule,
motor protein; HET: ADP; 2.20A {Solanum tuberosum}
SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Length = 369
Score = 75.7 bits (187), Expect = 7e-18
Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 9/58 (15%)
Query: 34 PPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGE-KT 90
K +D F D N A+Q+ VF+ + ++ +A GYN CIFAYGQTG KT
Sbjct: 45 KAKQHMYDRVF---DGN----ATQDDVFEDT-KYLVQSAVDGYNVCIFAYGQTGSGKT 94
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor
homology domain, karyog mitosis, microtubules; HET: ADP
EBC; 2.30A {Saccharomyces cerevisiae}
Length = 403
Score = 74.6 bits (184), Expect = 2e-17
Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 8/64 (12%)
Query: 24 LTGTGRSHLKPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAY 83
+ T + F FD F D + VF + ++ ++ GYN IFAY
Sbjct: 96 MEVTKIQNTAQVHEFKFDKIF---DQQ----DTNVDVFKEV-GQLVQSSLDGYNVAIFAY 147
Query: 84 GQTG 87
GQTG
Sbjct: 148 GQTG 151
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural
genomics, structur Al genomics consortium, SGC; HET:
ADP; 1.85A {Homo sapiens}
Length = 330
Score = 73.0 bits (180), Expect = 5e-17
Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 8/54 (14%)
Query: 34 PPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTG 87
P +F D F P ASQ+ VF + + ++ + G+N CIFAYGQTG
Sbjct: 46 KPVSFELDKVF---SPQ----ASQQDVFQEV-QALVTSCIDGFNVCIFAYGQTG 91
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free,
transport protein; 1.60A {Plasmodium falciparum} SCOP:
c.37.1.9
Length = 360
Score = 70.4 bits (173), Expect = 5e-16
Identities = 15/58 (25%), Positives = 23/58 (39%), Gaps = 9/58 (15%)
Query: 35 PKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQ-GYNACIFAYGQTGE-KT 90
F D F D V++ + ++ + ++ G FAYGQTG KT
Sbjct: 49 RHEFIVDKVF---DDT----VDNFTVYENTIKPLIIDLYENGCVCSCFAYGQTGSGKT 99
>3u06_A Protein claret segregational; motor domain, stalk rotation, power
stroke, kinesin-14, MICR binding, NCD, transport,
molecular motor; HET: ADP GOL; 2.35A {Drosophila
melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Length = 412
Score = 70.4 bits (173), Expect = 6e-16
Identities = 23/58 (39%), Positives = 32/58 (55%), Gaps = 9/58 (15%)
Query: 34 PPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGE-KT 90
+ F+FD F P +SQ +F+ + ++ +A GYN CIFAYGQTG KT
Sbjct: 104 GQQIFSFDQVF---HPL----SSQSDIFEMV-SPLIQSALDGYNICIFAYGQTGSGKT 153
>2gjx_A Beta-hexosaminidase alpha chain; beta-hexosaminidase A,
glycosidase, TAY-sachs disease, GM2 ganglisode, TIM
barrel, hydrolase; HET: NAG BMA NDG; 2.80A {Homo
sapiens} SCOP: c.1.8.6 d.92.2.1 PDB: 2gk1_A*
Length = 507
Score = 27.0 bits (60), Expect = 1.1
Identities = 16/50 (32%), Positives = 19/50 (38%)
Query: 35 PKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYG 84
P+ F Y L PN F G +LD AFQ Y +F G
Sbjct: 5 PQNFQTSDQRYVLYPNNFQFQYDVSSAAQPGCSVLDEAFQRYRDLLFGSG 54
>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein
structure initiative, TB structural genomics consortium,
TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis}
SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*
Length = 456
Score = 26.7 bits (59), Expect = 1.3
Identities = 6/22 (27%), Positives = 11/22 (50%), Gaps = 1/22 (4%)
Query: 64 LGRDI-LDNAFQGYNACIFAYG 84
+G + + Y+A I+A G
Sbjct: 84 VGEHVQPGELSERYDAVIYAVG 105
>2g3m_A Maltase, alpha-glucosidase; hydrolase, glycoside hydrolase family
31, multidomain protein, (beta/alpha)8 barrel, retaining
mechanism; 2.55A {Sulfolobus solfataricus} PDB: 2g3n_A*
Length = 693
Score = 26.6 bits (59), Expect = 1.7
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 4/36 (11%)
Query: 12 PTAKQVRKQTTYLTGTGRSHLKPPK-TFAFDHCFYS 46
P + V ++ T L TG+ L PP F + YS
Sbjct: 153 PRIEDVLEKYTEL--TGKPFL-PPMWAFGYMISRYS 185
>3qsl_A Putative exported protein; unknown, structural genomics,
PSI-biology, midwest center FO structural genomics,
MCSG, unknown function; HET: MSE CIT; 2.00A {Bordetella
bronchiseptica}
Length = 346
Score = 26.0 bits (57), Expect = 2.3
Identities = 7/39 (17%), Positives = 14/39 (35%)
Query: 47 LDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQ 85
LD ++ +FA K A+ D + + +
Sbjct: 64 LDVSIADFAGGSKALQAVVGGSADVVSGAFEHTLSLQAK 102
>3rhe_A NAD-dependent benzaldehyde dehydrogenase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc, SGX; 2.05A {Legionella pneumophila}
Length = 148
Score = 25.4 bits (55), Expect = 2.9
Identities = 8/41 (19%), Positives = 17/41 (41%)
Query: 9 VYLPTAKQVRKQTTYLTGTGRSHLKPPKTFAFDHCFYSLDP 49
+ + + V + + S ++PP F + F +DP
Sbjct: 73 FQVNSNEMVDEIHRQWSDKEISIIQPPTQMDFGYTFVGVDP 113
>1now_A Beta-hexosaminidase beta chain; (beta/alpha)8-barrel, homodimer,
family 20 glycosidase, HYDR; HET: NAG IFG; 2.20A {Homo
sapiens} SCOP: c.1.8.6 d.92.2.1 PDB: 1nou_A* 1np0_A*
2gjx_B* 3lmy_A* 1o7a_A* 2gk1_B*
Length = 507
Score = 25.1 bits (55), Expect = 5.2
Identities = 9/49 (18%), Positives = 16/49 (32%)
Query: 35 PKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAY 83
P + L P + +L+ AF+ Y+ IF +
Sbjct: 11 PLSVKMTPNLLHLAPENFYISHSPNSTAGPSCTLLEEAFRRYHGYIFGF 59
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 25.0 bits (54), Expect = 6.0
Identities = 15/68 (22%), Positives = 25/68 (36%), Gaps = 26/68 (38%)
Query: 5 DTTRVYLPTAKQV-------RKQTTYLTGTGRSHLKPPKTFAFDHCFYSLDPNL-----P 52
+ T +LP KQV K ++G PP++ Y L+ L P
Sbjct: 354 NKTNSHLPAGKQVEISLVNGAKNLV-VSG-------PPQS------LYGLNLTLRKAKAP 399
Query: 53 NFASQEKV 60
+ Q ++
Sbjct: 400 SGLDQSRI 407
>3c3v_A Arachin ARAH3 isoform; peanut allergen, allergy, glycinin; 1.73A
{Arachis hypogaea}
Length = 510
Score = 24.9 bits (53), Expect = 7.4
Identities = 7/31 (22%), Positives = 15/31 (48%)
Query: 44 FYSLDPNLPNFASQEKVFDALGRDILDNAFQ 74
P++ N A + V D L +++ N++
Sbjct: 450 KTDSRPSIANLAGENSVIDNLPEEVVANSYG 480
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.139 0.431
Gapped
Lambda K H
0.267 0.0757 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,539,470
Number of extensions: 76641
Number of successful extensions: 186
Number of sequences better than 10.0: 1
Number of HSP's gapped: 160
Number of HSP's successfully gapped: 43
Length of query: 103
Length of database: 6,701,793
Length adjustment: 68
Effective length of query: 35
Effective length of database: 4,803,165
Effective search space: 168110775
Effective search space used: 168110775
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.4 bits)