RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12526
(103 letters)
>d2zfia1 c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), kif1a
[TaxId: 10090]}
Length = 349
Score = 58.1 bits (139), Expect = 6e-12
Identities = 30/70 (42%), Positives = 48/70 (68%), Gaps = 1/70 (1%)
Query: 29 RSHLKPPKTFAFDHCFYSLD-PNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTG 87
+ + PK+F+FD+ ++S P N+ASQ++V+ +G ++L +AF+GYN CIFAYGQTG
Sbjct: 38 KQPKETPKSFSFDYSYWSHTSPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTG 97
Query: 88 EKTNYLLNGN 97
+Y + G
Sbjct: 98 AGKSYTMMGK 107
>d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]}
Length = 354
Score = 55.7 bits (133), Expect = 4e-11
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 7/55 (12%)
Query: 33 KPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTG 87
+ +F FD F D + Q +FD + +D+ GYN +FAYGQTG
Sbjct: 43 EAQGSFTFDRVF---DMS----CKQSDIFDFSIKPTVDDILNGYNGTVFAYGQTG 90
>d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId:
9606]}
Length = 323
Score = 54.1 bits (129), Expect = 1e-10
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
Query: 32 LKPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTN 91
+ K +AFD F + SQE+V++ + I+ + +GYN IFAYGQT
Sbjct: 38 VIASKPYAFDRVF---QSS----TSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKT 90
Query: 92 YLLNGN 97
+ + G
Sbjct: 91 HTMEGK 96
>d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato
(Solanum tuberosum) [TaxId: 4113]}
Length = 364
Score = 54.2 bits (129), Expect = 1e-10
Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 8/68 (11%)
Query: 34 PPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYL 93
K +D F D N A+Q+ VF+ + ++ +A GYN CIFAYGQTG +
Sbjct: 40 KAKQHMYDRVF---DGN----ATQDDVFEDT-KYLVQSAVDGYNVCIFAYGQTGSGKTFT 91
Query: 94 LNGNGPFP 101
+ G P
Sbjct: 92 IYGADSNP 99
>d1v8ka_ c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c [TaxId:
10090]}
Length = 362
Score = 53.4 bits (127), Expect = 2e-10
Identities = 25/87 (28%), Positives = 34/87 (39%), Gaps = 18/87 (20%)
Query: 1 MPSRDTTRVYLPTAKQVRKQTTYLTGTGRSHLKPPKTFAFDHCFYSLDPNLPNFASQEKV 60
+PS+ V+ P K + + F FD F D AS E V
Sbjct: 56 VPSKCLLLVHEPKLKVDLTKYL-----------ENQAFCFDFAF---DET----ASNEVV 97
Query: 61 FDALGRDILDNAFQGYNACIFAYGQTG 87
+ R ++ F+G A FAYGQTG
Sbjct: 98 YRFTARPLVQTIFEGGKATCFAYGQTG 124
>d1ry6a_ c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodium
falciparum) [TaxId: 5833]}
Length = 330
Score = 53.1 bits (126), Expect = 3e-10
Identities = 16/67 (23%), Positives = 26/67 (38%), Gaps = 8/67 (11%)
Query: 35 PKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAF-QGYNACIFAYGQTGEKTNYL 93
F D F D V++ + ++ + + G FAYGQTG Y
Sbjct: 49 RHEFIVDKVF---DDT----VDNFTVYENTIKPLIIDLYENGCVCSCFAYGQTGSGKTYT 101
Query: 94 LNGNGPF 100
+ G+ P+
Sbjct: 102 MLGSQPY 108
>d1x88a1 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens),
mitotic kinesin eg5 [TaxId: 9606]}
Length = 345
Score = 52.3 bits (124), Expect = 5e-10
Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 7/76 (9%)
Query: 19 KQTTYLTGTGRSHLKPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNA 78
++ + G + KT+ FD F + Q V+ ++ ILD GYN
Sbjct: 30 RKEVSVRTGGLADKSSRKTYTFDMVF---GAS----TKQIDVYRSVVCPILDEVIMGYNC 82
Query: 79 CIFAYGQTGEKTNYLL 94
IFAYGQTG + +
Sbjct: 83 TIFAYGQTGTGKTFTM 98
>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional)
{Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 368
Score = 44.1 bits (103), Expect = 4e-07
Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 8/64 (12%)
Query: 34 PPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYL 93
+ F+FD F+ +SQ +F+ + ++ +A GYN CIFAYGQTG Y
Sbjct: 90 GQQIFSFDQVFHP-------LSSQSDIFEMVS-PLIQSALDGYNICIFAYGQTGSGKTYT 141
Query: 94 LNGN 97
++G
Sbjct: 142 MDGV 145
>d1f9va_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional)
{Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId:
4932]}
Length = 342
Score = 42.3 bits (98), Expect = 2e-06
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 8/71 (11%)
Query: 24 LTGTGRSHLKPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAY 83
+ T + F FD F D + VF +G+ ++ ++ GYN CIFAY
Sbjct: 38 MEVTKIQNTAQVHEFKFDKIF---DQQ----DTNVDVFKEVGQ-LVQSSLDGYNVCIFAY 89
Query: 84 GQTGEKTNYLL 94
GQTG + +
Sbjct: 90 GQTGSGKTFTM 100
>d2gjxa2 d.92.2.1 (A:23-166) beta-hexosaminidase A {Human (Homo
sapiens) [TaxId: 9606]}
Length = 144
Score = 24.5 bits (52), Expect = 2.6
Identities = 16/69 (23%), Positives = 21/69 (30%)
Query: 35 PKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLL 94
P+ F Y L PN F G +LD AFQ Y +F G
Sbjct: 5 PQNFQTSDQRYVLYPNNFQFQYDVSSAAQPGCSVLDEAFQRYRDLLFGSGSWPRPYLTGK 64
Query: 95 NGNGPFPLI 103
++
Sbjct: 65 RHTLEKNVL 73
>d1nowa2 d.92.2.1 (A:55-199) beta-hexosaminidase B, N-terminal
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 145
Score = 24.5 bits (52), Expect = 2.8
Identities = 9/48 (18%), Positives = 15/48 (31%)
Query: 35 PKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFA 82
P + L P + +L+ AF+ Y+ IF
Sbjct: 6 PLSVKMTPNLLHLAPENFYISHSPNSTAGPSCTLLEEAFRRYHGYIFG 53
>d1cbya_ d.103.1.1 (A:) Mosquitocidal delta-endotoxin CytB {Bacillus
thuringiensis, strain Kyushuensis [TaxId: 1428]}
Length = 227
Score = 23.2 bits (50), Expect = 6.4
Identities = 8/35 (22%), Positives = 12/35 (34%), Gaps = 5/35 (14%)
Query: 66 RDILDNAF-----QGYNACIFAYGQTGEKTNYLLN 95
+ F Q A IF + + T+Y N
Sbjct: 118 EATIKGTFTNLDTQIDEAWIFWHSLSAHNTSYYYN 152
>d1uija1 b.82.1.2 (A:6-175) Seed storage 7S protein {Soybean
(Glycine max), beta-conglycinin beta subunit [TaxId:
3847]}
Length = 170
Score = 22.9 bits (49), Expect = 7.9
Identities = 6/27 (22%), Positives = 12/27 (44%)
Query: 48 DPNLPNFASQEKVFDALGRDILDNAFQ 74
D L + +Q+ +IL+ +F
Sbjct: 132 DFFLSSTQAQQSYLQGFSHNILETSFH 158
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.139 0.431
Gapped
Lambda K H
0.267 0.0566 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 379,388
Number of extensions: 15204
Number of successful extensions: 47
Number of sequences better than 10.0: 1
Number of HSP's gapped: 40
Number of HSP's successfully gapped: 16
Length of query: 103
Length of database: 2,407,596
Length adjustment: 64
Effective length of query: 39
Effective length of database: 1,528,876
Effective search space: 59626164
Effective search space used: 59626164
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.2 bits)