BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12528
(258 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation
pdb|2P2M|B Chain B, Acetyl-Coa Synthetase, R194a Mutation
Length = 652
Score = 155 bits (393), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 76/157 (48%), Positives = 103/157 (65%), Gaps = 14/157 (8%)
Query: 98 ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVV 157
ARRDEDGY W+TGRVDD+LNVSGH + E+E+ L +HP ++EAAVV
Sbjct: 502 ARRDEDGYYWITGRVDDVLNVSGHRLGT-------------AEIESALVAHPKIAEAAVV 548
Query: 158 SRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSG 217
PH +KG+ +Y ++T G + EL +++ VR++IGP A PDV+ LPKTRSG
Sbjct: 549 GIPHAIKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSG 608
Query: 218 KIMRRVLRKVAVND-REVGDKSTLADEDVVDELFQNR 253
KIMRR+LRK+A D +GD STLAD VV++L + +
Sbjct: 609 KIMRRILRKIAAGDTSNLGDTSTLADPGVVEKLLEEK 645
>pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation
pdb|2P2B|B Chain B, Acetyl-coa Synthetase, V386a Mutation
Length = 652
Score = 155 bits (393), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 76/157 (48%), Positives = 103/157 (65%), Gaps = 14/157 (8%)
Query: 98 ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVV 157
ARRDEDGY W+TGRVDD+LNVSGH + E+E+ L +HP ++EAAVV
Sbjct: 502 ARRDEDGYYWITGRVDDVLNVSGHRLGT-------------AEIESALVAHPKIAEAAVV 548
Query: 158 SRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSG 217
PH +KG+ +Y ++T G + EL +++ VR++IGP A PDV+ LPKTRSG
Sbjct: 549 GIPHAIKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSG 608
Query: 218 KIMRRVLRKVAVND-REVGDKSTLADEDVVDELFQNR 253
KIMRR+LRK+A D +GD STLAD VV++L + +
Sbjct: 609 KIMRRILRKIAAGDTSNLGDTSTLADPGVVEKLLEEK 645
>pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
pdb|2P2F|B Chain B, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
Length = 652
Score = 155 bits (393), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 76/157 (48%), Positives = 103/157 (65%), Gaps = 14/157 (8%)
Query: 98 ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVV 157
ARRDEDGY W+TGRVDD+LNVSGH + E+E+ L +HP ++EAAVV
Sbjct: 502 ARRDEDGYYWITGRVDDVLNVSGHRLGT-------------AEIESALVAHPKIAEAAVV 548
Query: 158 SRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSG 217
PH +KG+ +Y ++T G + EL +++ VR++IGP A PDV+ LPKTRSG
Sbjct: 549 GIPHAIKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSG 608
Query: 218 KIMRRVLRKVAVND-REVGDKSTLADEDVVDELFQNR 253
KIMRR+LRK+A D +GD STLAD VV++L + +
Sbjct: 609 KIMRRILRKIAAGDTSNLGDTSTLADPGVVEKLLEEK 645
>pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG3|B Chain B, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG4|A Chain A, Acetyl Coa Synthetase, Salmonella Enterica
pdb|1PG4|B Chain B, Acetyl Coa Synthetase, Salmonella Enterica
Length = 652
Score = 155 bits (393), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 76/157 (48%), Positives = 103/157 (65%), Gaps = 14/157 (8%)
Query: 98 ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVV 157
ARRDEDGY W+TGRVDD+LNVSGH + E+E+ L +HP ++EAAVV
Sbjct: 502 ARRDEDGYYWITGRVDDVLNVSGHRLGT-------------AEIESALVAHPKIAEAAVV 548
Query: 158 SRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSG 217
PH +KG+ +Y ++T G + EL +++ VR++IGP A PDV+ LPKTRSG
Sbjct: 549 GIPHAIKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSG 608
Query: 218 KIMRRVLRKVAVND-REVGDKSTLADEDVVDELFQNR 253
KIMRR+LRK+A D +GD STLAD VV++L + +
Sbjct: 609 KIMRRILRKIAAGDTSNLGDTSTLADPGVVEKLLEEK 645
>pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation
pdb|2P2J|B Chain B, Acetyl-Coa Synthetase, K609a Mutation
Length = 652
Score = 154 bits (388), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 75/157 (47%), Positives = 102/157 (64%), Gaps = 14/157 (8%)
Query: 98 ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVV 157
ARRDEDGY W+TGRVDD+LNVSGH + E+E+ L +HP ++EAAVV
Sbjct: 502 ARRDEDGYYWITGRVDDVLNVSGHRLGT-------------AEIESALVAHPKIAEAAVV 548
Query: 158 SRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSG 217
PH +KG+ +Y ++T G + EL +++ VR++IGP A PDV+ LPKTRSG
Sbjct: 549 GIPHAIKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSG 608
Query: 218 KIMRRVLRKVAVND-REVGDKSTLADEDVVDELFQNR 253
IMRR+LRK+A D +GD STLAD VV++L + +
Sbjct: 609 AIMRRILRKIAAGDTSNLGDTSTLADPGVVEKLLEEK 645
>pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation
pdb|2P2Q|B Chain B, Acetyl-Coa Synthetase, R584e Mutation
Length = 652
Score = 153 bits (387), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 75/157 (47%), Positives = 102/157 (64%), Gaps = 14/157 (8%)
Query: 98 ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVV 157
ARRDEDGY W+TGRVDD+LNVSGH + E+E+ L +HP ++EAAVV
Sbjct: 502 ARRDEDGYYWITGRVDDVLNVSGHRLGT-------------AEIESALVAHPKIAEAAVV 548
Query: 158 SRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSG 217
PH +KG+ +Y ++T G + EL +++ V ++IGP A PDV+ LPKTRSG
Sbjct: 549 GIPHAIKGQAIYAYVTLNHGEEPSPELYAEVRNWVEKEIGPLATPDVLHWTDSLPKTRSG 608
Query: 218 KIMRRVLRKVAVND-REVGDKSTLADEDVVDELFQNR 253
KIMRR+LRK+A D +GD STLAD VV++L + +
Sbjct: 609 KIMRRILRKIAAGDTSNLGDTSTLADPGVVEKLLEEK 645
>pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation
pdb|2P20|B Chain B, Acetyl-Coa Synthetase, R584a Mutation
Length = 652
Score = 153 bits (386), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 75/157 (47%), Positives = 102/157 (64%), Gaps = 14/157 (8%)
Query: 98 ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVV 157
ARRDEDGY W+TGRVDD+LNVSGH + E+E+ L +HP ++EAAVV
Sbjct: 502 ARRDEDGYYWITGRVDDVLNVSGHRLGT-------------AEIESALVAHPKIAEAAVV 548
Query: 158 SRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSG 217
PH +KG+ +Y ++T G + EL +++ V ++IGP A PDV+ LPKTRSG
Sbjct: 549 GIPHAIKGQAIYAYVTLNHGEEPSPELYAEVRNWVAKEIGPLATPDVLHWTDSLPKTRSG 608
Query: 218 KIMRRVLRKVAVND-REVGDKSTLADEDVVDELFQNR 253
KIMRR+LRK+A D +GD STLAD VV++L + +
Sbjct: 609 KIMRRILRKIAAGDTSNLGDTSTLADPGVVEKLLEEK 645
>pdb|1RY2|A Chain A, Crystal Structure Of Yeast Acetyl-Coenzyme A Synthetase In
Complex With Amp
Length = 663
Score = 119 bits (299), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 83/250 (33%), Positives = 128/250 (51%), Gaps = 38/250 (15%)
Query: 14 PARPGMERFSFTVLGQVTVPQISILEPRLGDDLNLTLSMNPTLVGRRAMKSLK---FQNT 70
P +PG F F + V +L+P G++LN T L + A S ++N
Sbjct: 438 PMKPGSASFPFFGIDAV------VLDPNTGEELN-TSHAEGVLAVKAAWPSFARTIWKNH 490
Query: 71 SKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGS 130
+ L+ + + FT + A +D+DGY+W+ GRVDD++NVSGH +
Sbjct: 491 DRYLDTYLNPYPGYYFTGDG-------AAKDKDGYIWILGRVDDVVNVSGHRL------- 536
Query: 131 YCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFN-------QE 183
STA E+EA + P V+E AVV + G+ + F+ ++++ Q+
Sbjct: 537 --STA----EIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKSSWSTATDDELQD 590
Query: 184 LVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSGKIMRRVLRKVAVNDR-EVGDKSTLAD 242
+ K L VR+ IGPFA P +I LPKTRSGKIMRR+LRK+ + ++GD STL++
Sbjct: 591 IKKHLVFTVRKDIGPFAAPKLIILVDDLPKTRSGKIMRRILRKILAGESDQLGDVSTLSN 650
Query: 243 EDVVDELFQN 252
+V L +
Sbjct: 651 PGIVRHLIDS 660
>pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
pdb|3ETC|B Chain B, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
Length = 580
Score = 84.7 bits (208), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 46/128 (35%), Positives = 64/128 (50%), Gaps = 13/128 (10%)
Query: 98 ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVV 157
A DEDGYLW GR DD++ SG+ + + EVE+ L HP V E A+
Sbjct: 460 AWMDEDGYLWFVGRADDIIKTSGYKVGPF-------------EVESALIQHPAVLECAIT 506
Query: 158 SRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSG 217
P PV+G+ + I T + L +L+ V+ P+ P +I+ P LPKT SG
Sbjct: 507 GVPDPVRGQVIKATIVLTKDYTPSDSLKNELQDHVKNVTAPYKYPRIIEFVPELPKTISG 566
Query: 218 KIMRRVLR 225
KI R +R
Sbjct: 567 KIRRVEIR 574
>pdb|3B7W|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a, With L64p Mutation
pdb|3C5E|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Atp
pdb|3DAY|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp-Cpp
pdb|2VZE|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|C Chain C, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|3EQ6|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3EQ6|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3GPC|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
pdb|3GPC|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
Length = 570
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/135 (38%), Positives = 69/135 (51%), Gaps = 15/135 (11%)
Query: 93 LLLSSARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVS 152
LL +DEDGY GR DD++N SG Y G +EVE L HP V
Sbjct: 436 LLGDRGIKDEDGYFQFMGRADDIINSSG-----YRIGP--------SEVENALMEHPAVV 482
Query: 153 EAAVVSRPHPVKGECLYCFITPAGGATFN--QELVKQLKQQVREKIGPFAMPDVIQHAPR 210
E AV+S P PV+GE + F+ A + ++L K+L+Q V+ P+ P I+
Sbjct: 483 ETAVISSPDPVRGEVVKAFVVLASQFLSHDPEQLTKELQQHVKSVTAPYKYPRKIEFVLN 542
Query: 211 LPKTRSGKIMRRVLR 225
LPKT +GKI R LR
Sbjct: 543 LPKTVTGKIQRAKLR 557
>pdb|2WD9|A Chain A, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|B Chain B, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|C Chain C, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
Length = 569
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/135 (38%), Positives = 69/135 (51%), Gaps = 15/135 (11%)
Query: 93 LLLSSARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVS 152
LL +DEDGY GR DD++N SG Y G +EVE L HP V
Sbjct: 436 LLGDRGIKDEDGYFQFMGRADDIINSSG-----YRIGP--------SEVENALMEHPAVV 482
Query: 153 EAAVVSRPHPVKGECLYCFITPAGGATFN--QELVKQLKQQVREKIGPFAMPDVIQHAPR 210
E AV+S P PV+GE + F+ A + ++L K+L+Q V+ P+ P I+
Sbjct: 483 ETAVISSPDPVRGEVVKAFVVLASQFLSHDPEQLTKELQQHVKSVTAPYKYPRKIEFVLN 542
Query: 211 LPKTRSGKIMRRVLR 225
LPKT +GKI R LR
Sbjct: 543 LPKTVTGKIQRAKLR 557
>pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1ULT|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
Length = 541
Score = 61.2 bits (147), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 60/126 (47%), Gaps = 16/126 (12%)
Query: 101 DEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRP 160
DE+GY+ + R+ D++ G ++ ++E L HP V EAAVV+ P
Sbjct: 423 DEEGYVEIKDRLKDLIKSGGEWISS-------------VDLENALMGHPKVKEAAVVAIP 469
Query: 161 HPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSGKIM 220
HP E + P G +EL + L ++ + +PD A +P+T +GK +
Sbjct: 470 HPKWQERPLAVVVPRGEKPTPEELNEHL---LKAGFAKWQLPDAYVFAEEIPRTSAGKFL 526
Query: 221 RRVLRK 226
+R LR+
Sbjct: 527 KRALRE 532
>pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate
pdb|1MDF|A Chain A, Crystal Structure Of Dhbe In Absence Of Substrate
Length = 539
Score = 60.8 bits (146), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 64/147 (43%), Gaps = 16/147 (10%)
Query: 81 HNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTE 140
HN SFT + R DGY+ V GR D +N G + E
Sbjct: 398 HNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAA-------------EE 444
Query: 141 VEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFA 200
VE L +HP V +AA+VS P GE FI P A EL L+++ + +
Sbjct: 445 VENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRDEAPKAAELKAFLRER---GLAAYK 501
Query: 201 MPDVIQHAPRLPKTRSGKIMRRVLRKV 227
+PD ++ P+T GK+ ++ LR+
Sbjct: 502 IPDRVEFVESFPQTGVGKVSKKALREA 528
>pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp
Length = 539
Score = 60.5 bits (145), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 63/147 (42%), Gaps = 16/147 (10%)
Query: 81 HNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTE 140
HN SFT + R DGY+ V GR D +N G + E
Sbjct: 398 HNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAA-------------EE 444
Query: 141 VEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFA 200
VE L +HP V +AA VS P GE FI P A EL L+++ + +
Sbjct: 445 VENHLLAHPAVHDAAXVSXPDQFLGERSCVFIIPRDEAPKAAELKAFLRER---GLAAYK 501
Query: 201 MPDVIQHAPRLPKTRSGKIMRRVLRKV 227
+PD ++ P+T GK+ ++ LR+
Sbjct: 502 IPDRVEFVESFPQTGVGKVSKKALREA 528
>pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Methylmalonyl-Coa And Amp Bound
pdb|3NYR|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Malonyl-Coa And Amp Bound
Length = 505
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 60/130 (46%), Gaps = 16/130 (12%)
Query: 98 ARRDEDGYLWVTGR-VDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAV 156
A RD DGY+ + GR D++ G Y G+ E+E L HP+V EAAV
Sbjct: 390 AVRDPDGYVRIVGRKATDLIKSGG-----YKIGA--------GEIENALLEHPEVREAAV 436
Query: 157 VSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRS 216
P P GE + +I PA + L V ++ P P V+++ +P+
Sbjct: 437 TGEPDPDLGERIVAWIVPA--DPAAPPALGTLADHVAARLAPHKRPRVVRYLDAVPRNDM 494
Query: 217 GKIMRRVLRK 226
GKIM+R L +
Sbjct: 495 GKIMKRALNR 504
>pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
pdb|3G7S|B Chain B, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
Length = 549
Score = 54.7 bits (130), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 61/128 (47%), Gaps = 18/128 (14%)
Query: 101 DEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRP 160
DE+G+L RV +++ G+ + + E+EA L H V + AV+ +P
Sbjct: 427 DEEGFLHFQDRVKEVIKYKGYTIAPF-------------ELEALLXKHEAVXDVAVIGKP 473
Query: 161 HPVKGECLYCFIT--PAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSGK 218
GE FI P ++E + + VRE+I + ++ LP+T SGK
Sbjct: 474 DEEAGEVPKAFIVLKPEYRGKVDEE---DIIEWVRERISGYKRVREVEFVEELPRTASGK 530
Query: 219 IMRRVLRK 226
++RR+LR+
Sbjct: 531 LLRRLLRE 538
>pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|B Chain B, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|C Chain C, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
Length = 506
Score = 50.8 bits (120), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 57/126 (45%), Gaps = 13/126 (10%)
Query: 101 DEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRP 160
DE GY+ + GR D++ G F Y E+E+ + + P V E+AV+ P
Sbjct: 387 DERGYVHILGRGXDLVITGG-------FNVYPX------EIESEIDAMPGVVESAVIGVP 433
Query: 161 HPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSGKIM 220
H GE + F+ ++ L ++L V +++ F MP + LP+ G +
Sbjct: 434 HADFGEGVTAFVVLXREFAPSEILAEELXAFVXDRLAXFXMPXXVIFVDDLPRNTMGAVQ 493
Query: 221 RRVLRK 226
VLR+
Sbjct: 494 XNVLRE 499
>pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|B Chain B, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|C Chain C, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|D Chain D, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|E Chain E, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|F Chain F, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|G Chain G, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|H Chain H, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|I Chain I, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|J Chain J, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
Length = 617
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 75/177 (42%), Gaps = 31/177 (17%)
Query: 81 HNNFSFTTN----NSDLLLSSARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAK 136
HN +F N + DL+ D +GY+ V GR D +N G +
Sbjct: 402 HNASAFDANGFYCSGDLI----SIDPEGYITVQGREKDQINRGGEKIAA----------- 446
Query: 137 VFTEVEACLASHPDVSEAAVVSRPHPVKGE--CLYCFITPAGGATFNQELVKQLKQQVRE 194
E+E L HP V AA+VS + GE C Y + A Q+++ +RE
Sbjct: 447 --EEIENLLLRHPAVIYAALVSMEDELMGEKSCAYLVVKEPLRAV-------QVRRFLRE 497
Query: 195 K-IGPFAMPDVIQHAPRLPKTRSGKIMRRVLRKVAVNDREVGDKSTLADEDVVDELF 250
+ I F +PD ++ LP T GK+ ++ LR+ + G S A + + E+
Sbjct: 498 QGIAEFKLPDRVECVDSLPLTAVGKVDKKQLRQWLASRASAGRASIPASKAALREVI 554
>pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 56/126 (44%), Gaps = 16/126 (12%)
Query: 101 DEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRP 160
DE GY+ + GR D++ G F Y E+E+ + + P V E+AV+ P
Sbjct: 387 DERGYVHILGRGXDLVITGG-------FNVYPX------EIESEIDAMPGVVESAVIGVP 433
Query: 161 HPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSGKIM 220
H GE + + GAT ++ Q+ + ++ F MP + LP+ G +
Sbjct: 434 HADFGEGVTAVVVRDXGATIDE---AQVLHGLDGQLAXFXMPXXVIFVDDLPRNTMGAVQ 490
Query: 221 RRVLRK 226
VLR+
Sbjct: 491 XNVLRE 496
>pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|B Chain B, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|C Chain C, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|D Chain D, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 57/126 (45%), Gaps = 16/126 (12%)
Query: 101 DEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRP 160
DE GY+ + GR D++ G F Y E+E+ + + P V E+AV+ P
Sbjct: 387 DERGYVHILGRGKDLVITGG-------FNVYPK------EIESEIDAXPGVVESAVIGVP 433
Query: 161 HPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSGKIM 220
H GE + + GAT ++ Q+ + ++ F P + LP+ GK+
Sbjct: 434 HADFGEGVTAVVVRDKGATIDE---AQVLHGLDGQLAKFKXPKKVIFVDDLPRNTXGKVQ 490
Query: 221 RRVLRK 226
+ VLR+
Sbjct: 491 KNVLRE 496
>pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase
Length = 517
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 59/126 (46%), Gaps = 17/126 (13%)
Query: 101 DEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRP 160
D++GYL++ R+ DM+ G VY E+E+ + P VSE AV+ P
Sbjct: 401 DDEGYLYIKDRLKDMIISGGE--NVYP-----------AEIESVIIGVPGVSEVAVIGLP 447
Query: 161 HPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSGKIM 220
GE + A N+ +Q+ + ++ + +P + A +P+ +GKI+
Sbjct: 448 DEKWGEIAAAIVV----ADQNEVSEQQIVEYCGTRLARYKLPKKVIFAEAIPRNPTGKIL 503
Query: 221 RRVLRK 226
+ VLR+
Sbjct: 504 KTVLRE 509
>pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
pdb|2V7B|B Chain B, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
Length = 529
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 45/129 (34%), Positives = 57/129 (44%), Gaps = 18/129 (13%)
Query: 100 RDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSR 159
R +G GR DDML VSG Y S EVE L H V EAAVV
Sbjct: 416 RLPNGCYVYAGRSDDMLKVSGQ---------YVSP----VEVEMVLVQHDAVLEAAVVGV 462
Query: 160 PHP--VKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSG 217
H VK F+ ++ L ++LK V++++ P P I LPKT +G
Sbjct: 463 DHGGLVKTRA---FVVLKREFAPSEILAEELKAFVKDRLAPHKYPRDIVFVDDLPKTATG 519
Query: 218 KIMRRVLRK 226
KI R LR+
Sbjct: 520 KIQRFKLRE 528
>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein
Length = 979
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 3/92 (3%)
Query: 139 TEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGP 198
E+EA L HPD+++ AVV+ GE F+ + + +++ VKQ V +++
Sbjct: 494 AELEALLIGHPDITDVAVVAMKEEAAGEVPVAFVVKSKDSELSEDDVKQF---VSKQVVF 550
Query: 199 FAMPDVIQHAPRLPKTRSGKIMRRVLRKVAVN 230
+ + + +PK SGKI+R+ LR N
Sbjct: 551 YKRINKVFFTESIPKAPSGKILRKDLRAKLAN 582
>pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A
Nonribosomal Peptide Synthetase Termination Module
Length = 1304
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 59/136 (43%), Gaps = 32/136 (23%)
Query: 98 ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVV 157
AR DG + GR+DD + + GH + + E+E L +P V +A VV
Sbjct: 846 ARWLPDGTIEYAGRIDDQVKIRGHRIEL-------------EEIEKQLQEYPGVKDAVVV 892
Query: 158 SRPHPVKGECLYCFITPAGGATFNQELV-------KQLKQQVREKIGPFAMPDVIQHAPR 210
+ H +G A+ N LV + +K +++++ + +P
Sbjct: 893 ADRHE------------SGDASINAYLVNRTQLSAEDVKAHLKKQLPAYMVPQTFTFLDE 940
Query: 211 LPKTRSGKIMRRVLRK 226
LP T +GK+ +R+L K
Sbjct: 941 LPLTTNGKVNKRLLPK 956
>pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O82|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O83|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O83|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O84|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3O84|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3U16|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U16|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U17|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
pdb|3U17|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
Length = 544
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 64/149 (42%), Gaps = 20/149 (13%)
Query: 81 HNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTE 140
HN+ F +N +R DG L V GR+ D +N G + E
Sbjct: 407 HNSQVFDEDNYYYSGDLVQRTPDGNLRVVGRIKDQINRGGEKIAS-------------EE 453
Query: 141 VEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQEL-VKQLKQQVRE-KIGP 198
+E + HP+V AA+V+ GE FI + N EL L++ + E I
Sbjct: 454 IEKLILLHPEVMHAALVAIVDEQFGEKSCAFIV-----SRNPELKAVVLRRHLMELGIAQ 508
Query: 199 FAMPDVIQHAPRLPKTRSGKIMRRVLRKV 227
+ +PD I+ LP T GK+ ++ LR +
Sbjct: 509 YKLPDQIKLIESLPLTAVGKVDKKQLRSI 537
>pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3
Length = 503
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 54/129 (41%), Gaps = 22/129 (17%)
Query: 101 DEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRP 160
DE GY+ + GR D++ G F Y E+E+ + + P V E+AV+ P
Sbjct: 387 DERGYVHILGRGXDLVITGG-------FNVYPX------EIESEIDAMPGVVESAVIGVP 433
Query: 161 HPVKGECLYCFITPAGGATFNQELV---KQLKQQVREKIGPFAMPDVIQHAPRLPKTRSG 217
H GE + F+ +E Q+ + ++ F MP + LP+ G
Sbjct: 434 HADFGEGVTAFV------VLXREFAPSEAQVLHGLDGQLAXFXMPXXVIFVDDLPRNTMG 487
Query: 218 KIMRRVLRK 226
+ VLR+
Sbjct: 488 AVQXNVLRE 496
>pdb|4GR5|A Chain A, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|B Chain B, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|C Chain C, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|D Chain D, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
Length = 570
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 58/127 (45%), Gaps = 15/127 (11%)
Query: 98 ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVV 157
ARR DG L GR DD + + G + EVEA L HP V +AAV+
Sbjct: 454 ARRRADGVLEYVGRADDQVKIRGFRVEP-------------GEVEARLVGHPAVRQAAVL 500
Query: 158 SRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSG 217
++ + + L ++ A A + +L++ V E + + +P LP+T +G
Sbjct: 501 AQDSRLGDKQLVAYVV-AERADAPPD-AAELRRHVAEALPAYMVPVECVPVDELPRTPNG 558
Query: 218 KIMRRVL 224
K+ RR L
Sbjct: 559 KLDRRAL 565
>pdb|1AMU|A Chain A, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
pdb|1AMU|B Chain B, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
Length = 563
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 57/128 (44%), Gaps = 20/128 (15%)
Query: 98 ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAV- 156
AR DG + GR+D+ + + GH + + EVE+ L H +SE AV
Sbjct: 415 ARWLSDGNIEYLGRIDNQVKIRGHRVEL-------------EEVESILLKHMYISETAVS 461
Query: 157 VSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRS 216
V + H + F++ ++QL+Q E++ + +P ++P T +
Sbjct: 462 VHKDHQEQPYLCAYFVSEKHIP------LEQLRQFSSEELPTYMIPSYFIQLDKMPLTSN 515
Query: 217 GKIMRRVL 224
GKI R+ L
Sbjct: 516 GKIDRKQL 523
>pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris
Turkestanicus Luciferase
Length = 582
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 61/144 (42%), Gaps = 21/144 (14%)
Query: 98 ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVV 157
A D+DGY ++ R+ ++ G+ + E+E+ L HP + +A V
Sbjct: 459 AYYDKDGYFFIVDRLKSLIKYKGYQVPP-------------AELESILLQHPFIFDAGVA 505
Query: 158 SRPHPVKGECLYCFITPAGGATFN-QELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRS 216
P P GE + G T QE++ + QV + ++ +PK +
Sbjct: 506 GIPDPDAGELPAAVVVLEEGKTMTEQEVMDYVAGQVTASK---RLRGGVKFVDEVPKGLT 562
Query: 217 GKIMRRVLRKVAVNDREVGDKSTL 240
GKI R +R++ + +G KS L
Sbjct: 563 GKIDARKIREILM----MGKKSKL 582
>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3A9V|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3NI2|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate:coa Ligase
Length = 536
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 47/88 (53%), Gaps = 3/88 (3%)
Query: 139 TEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGP 198
E+EA L +HP++S+AAVV GE F+ + + ++ ++KQ + +++
Sbjct: 447 AELEALLIAHPEISDAAVVGLKDEDAGEVPVAFVVKSEKSQATED---EIKQYISKQVIF 503
Query: 199 FAMPDVIQHAPRLPKTRSGKIMRRVLRK 226
+ + +PK SGKI+R+ L++
Sbjct: 504 YKRIKRVFFIEAIPKAPSGKILRKNLKE 531
>pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
pdb|4G37|B Chain B, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
Length = 555
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 62/147 (42%), Gaps = 24/147 (16%)
Query: 98 ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVV 157
A DED + ++ R+ ++ G C A E+E+ L HP++ +A V
Sbjct: 429 AYWDEDEHFFIVDRLKSLIKYKG-----------CQVAP--AELESILLQHPNIFDAGVA 475
Query: 158 SRPHPVKGECLYCFITPAGGATFNQ-ELVKQLKQQV---REKIGPFAMPDVIQHAPRLPK 213
P GE + G T + E+V + QV ++ G D +PK
Sbjct: 476 GLPDDDAGELPAAVVVLEHGKTMTEKEIVDYVASQVTTAKKLRGGVVFVD------EVPK 529
Query: 214 TRSGKIMRRVLRKVAVNDREVGDKSTL 240
+GK+ R +R++ + ++ G KS L
Sbjct: 530 GLTGKLDARKIREILIKAKK-GGKSKL 555
>pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
pdb|3IVR|B Chain B, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
Length = 509
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 47/127 (37%), Gaps = 14/127 (11%)
Query: 99 RRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVS 158
R D DGYL+ GR + + VY EVE L HP +++A V+
Sbjct: 384 RFDADGYLFYAGRAPEKELIKTGGENVYP-----------AEVEGALKQHPAIADAVVIG 432
Query: 159 RPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSGK 218
P P E + G + + L + V I + P + LPK G
Sbjct: 433 VPDPQWSEAIKAVCVCKPGESIAAD---ALAEFVASLIARYKKPKHVVFVEALPKDAKGA 489
Query: 219 IMRRVLR 225
I R ++
Sbjct: 490 IDRAAVK 496
>pdb|3FCC|A Chain A, Crystal Structure Of Dlta Protein In Complex With Atp And
Magnesium
pdb|3FCE|A Chain A, Crystal Structure Of Bacillus Cereus D-Alanyl Carrier
Protein Ligase Dlta In Complex With Atp: Implications
For Adenylation Mechanism
Length = 512
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 57/125 (45%), Gaps = 16/125 (12%)
Query: 102 EDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPH 161
E+G L+ GR+D + + G+ M + E+E L + V A +V
Sbjct: 388 ENGLLFYNGRLDFQIKLHGYRMEL-------------EEIEHHLRACSYVEGAVIVPIKK 434
Query: 162 PVKGECLYCFITPAGGATFNQE--LVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSGKI 219
K + L + P G +F +E L +K+++ E++ + +P + +P T +GK+
Sbjct: 435 GEKYDYLLAVVVP-GEHSFEKEFKLTSAIKKELNERLPNYMIPRKFMYQSSIPMTPNGKV 493
Query: 220 MRRVL 224
R+ L
Sbjct: 494 DRKKL 498
>pdb|3L8C|A Chain A, Structure Of Probable D-Alanine--Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes
pdb|3L8C|B Chain B, Structure Of Probable D-Alanine--Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes
pdb|3LGX|A Chain A, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|B Chain B, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|C Chain C, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|D Chain D, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
Length = 521
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 57/137 (41%), Gaps = 19/137 (13%)
Query: 102 EDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSR-- 159
ED L GR+D + +G+ + + +V L P V+ A V R
Sbjct: 392 EDNILLYGGRLDFQIKYAGYRIEL-------------EDVSQQLNQSPMVASAVAVPRYN 438
Query: 160 -PHPVKGECLYCFITPAGGATFNQEL--VKQLKQQVREKIGPFAMPDVIQHAPRLPKTRS 216
H V+ Y + F++EL K +K V++ + + MP + LP T +
Sbjct: 439 KEHKVQNLLAYIVVKDGVKERFDRELELTKAIKASVKDHMMSYMMPSKFLYRDSLPLTPN 498
Query: 217 GKIMRRVLRKVAVNDRE 233
GKI + L VN+RE
Sbjct: 499 GKIDIKTLIN-EVNNRE 514
>pdb|3DHV|A Chain A, Crystal Structure Of Dlta Protein In Complex With
D-Alanine Adenylate
Length = 512
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 57/125 (45%), Gaps = 16/125 (12%)
Query: 102 EDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPH 161
E+G L+ GR+D + + G+ M + E+E L + V A +V
Sbjct: 388 ENGLLFYNGRLDFQIKLHGYRMEL-------------EEIEHHLRACSYVEGAVIVPIKK 434
Query: 162 PVKGECLYCFITPAGGATFNQE--LVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSGKI 219
K + L + P G +F +E L +K+++ E++ + +P + +P T +GK+
Sbjct: 435 GEKYDYLLAVVVP-GEHSFEKEFKLTSAIKKELNERLPNYMIPRKFMYQSSIPMTPNGKV 493
Query: 220 MRRVL 224
R+ L
Sbjct: 494 DRKKL 498
>pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
pdb|4G36|B Chain B, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
Length = 555
Score = 36.6 bits (83), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 62/147 (42%), Gaps = 24/147 (16%)
Query: 98 ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVV 157
A DED + ++ R+ ++ G+ + E+E+ L HP++ +A V
Sbjct: 429 AYWDEDEHFFIVDRLKSLIKYKGYQVAP-------------AELESILLQHPNIFDAGVA 475
Query: 158 SRPHPVKGECLYCFITPAGGATFNQ-ELVKQLKQQV---REKIGPFAMPDVIQHAPRLPK 213
P GE + G T + E+V + QV ++ G D +PK
Sbjct: 476 GLPDDDAGELPAAVVVLEHGKTMTEKEIVDYVASQVTTAKKLRGGVVFVD------EVPK 529
Query: 214 TRSGKIMRRVLRKVAVNDREVGDKSTL 240
+GK+ R +R++ + ++ G KS L
Sbjct: 530 GLTGKLDARKIREILIKAKK-GGKSKL 555
>pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form)
pdb|3IER|A Chain A, Firefly Luciferase Apo Structure (P41 Form) With Peg 400
Bound
pdb|3IES|A Chain A, Firefly Luciferase Inhibitor Complex
Length = 551
Score = 36.6 bits (83), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 62/147 (42%), Gaps = 24/147 (16%)
Query: 98 ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVV 157
A DED + ++ R+ ++ G+ + E+E+ L HP++ +A V
Sbjct: 424 AYWDEDEHFFIVDRLKSLIKYKGYQVAP-------------AELESILLQHPNIFDAGVA 470
Query: 158 SRPHPVKGECLYCFITPAGGATFNQ-ELVKQLKQQV---REKIGPFAMPDVIQHAPRLPK 213
P GE + G T + E+V + QV ++ G D +PK
Sbjct: 471 GLPDDDAGELPAAVVVLEHGKTMTEKEIVDYVASQVTTAKKLRGGVVFVD------EVPK 524
Query: 214 TRSGKIMRRVLRKVAVNDREVGDKSTL 240
+GK+ R +R++ + ++ G KS L
Sbjct: 525 GLTGKLDARKIREILIKAKK-GGKSKL 550
>pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform
pdb|1LCI|A Chain A, Firefly Luciferase
pdb|3RIX|A Chain A, 1.7a Resolution Structure Of A Firefly
Luciferase-Aspulvinone J Inhibitor Complex
pdb|4E5D|A Chain A, 2.2a Resolution Structure Of A Firefly
Luciferase-Benzothiazole Inhibitor Complex
Length = 550
Score = 36.6 bits (83), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 62/147 (42%), Gaps = 24/147 (16%)
Query: 98 ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVV 157
A DED + ++ R+ ++ G+ + E+E+ L HP++ +A V
Sbjct: 424 AYWDEDEHFFIVDRLKSLIKYKGYQVAP-------------AELESILLQHPNIFDAGVA 470
Query: 158 SRPHPVKGECLYCFITPAGGATFNQ-ELVKQLKQQV---REKIGPFAMPDVIQHAPRLPK 213
P GE + G T + E+V + QV ++ G D +PK
Sbjct: 471 GLPDDDAGELPAAVVVLEHGKTMTEKEIVDYVASQVTTAKKLRGGVVFVD------EVPK 524
Query: 214 TRSGKIMRRVLRKVAVNDREVGDKSTL 240
+GK+ R +R++ + ++ G KS L
Sbjct: 525 GLTGKLDARKIREILIKAKK-GGKSKL 550
>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Mgatp
pdb|2D1R|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Oxyluciferin And Amp
Length = 548
Score = 35.4 bits (80), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 28/132 (21%), Positives = 53/132 (40%), Gaps = 25/132 (18%)
Query: 101 DEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRP 160
DE+ + ++ R+ ++ G+ + E+E+ L HP + +A V P
Sbjct: 429 DEEKHFFIVDRLKSLIKYKGYQVPP-------------AELESVLLQHPSIFDAGVAGVP 475
Query: 161 HPVKGECLYCFITPAGGATFNQELV-----KQLKQQVREKIGPFAMPDVIQHAPRLPKTR 215
PV GE + G ++ V Q+ R + G ++ +PK
Sbjct: 476 DPVAGELPGAVVVLESGKNMTEKEVMDYVASQVSNAKRLRGG-------VRFVDEVPKGL 528
Query: 216 SGKIMRRVLRKV 227
+GKI R +R++
Sbjct: 529 TGKIDGRAIREI 540
>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Red-Color Emission S286n Mutant Complexed
With High-Energy Intermediate Analogue
Length = 548
Score = 35.4 bits (80), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 27/128 (21%), Positives = 53/128 (41%), Gaps = 17/128 (13%)
Query: 101 DEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRP 160
DE+ + ++ R+ ++ G+ + E+E+ L HP + +A V P
Sbjct: 429 DEEKHFFIVDRLKSLIKYKGYQVPP-------------AELESVLLQHPSIFDAGVAGVP 475
Query: 161 HPVKGECLYCFITPAGGATFNQ-ELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSGKI 219
PV GE + G + E++ + QV + ++ +PK +GKI
Sbjct: 476 DPVAGELPGAVVVLESGKNMTEKEVMDYVASQVSNAK---RLRGGVRFVDEVPKGLTGKI 532
Query: 220 MRRVLRKV 227
R +R++
Sbjct: 533 DGRAIREI 540
>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With High-Energy Intermediate
Analogue
Length = 548
Score = 35.4 bits (80), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 27/128 (21%), Positives = 53/128 (41%), Gaps = 17/128 (13%)
Query: 101 DEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRP 160
DE+ + ++ R+ ++ G+ + E+E+ L HP + +A V P
Sbjct: 429 DEEKHFFIVDRLKSLIKYKGYQVPP-------------AELESVLLQHPSIFDAGVAGVP 475
Query: 161 HPVKGECLYCFITPAGGATFNQ-ELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSGKI 219
PV GE + G + E++ + QV + ++ +PK +GKI
Sbjct: 476 DPVAGELPGAVVVLESGKNMTEKEVMDYVASQVSNAK---RLRGGVRFVDEVPKGLTGKI 532
Query: 220 MRRVLRKV 227
R +R++
Sbjct: 533 DGRAIREI 540
>pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To
4cba-adenylate
Length = 504
Score = 32.3 bits (72), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 50/122 (40%), Gaps = 15/122 (12%)
Query: 103 DGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHP 162
+G + + GRVDDM+ G + +E+E L + P V+E V+
Sbjct: 392 EGTVRILGRVDDMIISGGENIHP-------------SEIERVLGTAPGVTEVVVIGLADQ 438
Query: 163 VKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSGKIMRR 222
G+ + + P G T + + + + ++ F P +LPK K++RR
Sbjct: 439 RWGQSVTACVVPRLGETLSADALDTFCRS--SELADFKRPKRYFILDQLPKNALNKVLRR 496
Query: 223 VL 224
L
Sbjct: 497 QL 498
>pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO
4-Chlorobenzoate
pdb|3CW9|A Chain A, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
pdb|3CW9|B Chain B, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
Length = 504
Score = 32.3 bits (72), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 50/122 (40%), Gaps = 15/122 (12%)
Query: 103 DGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHP 162
+G + + GRVDDM+ G + +E+E L + P V+E V+
Sbjct: 392 EGTVRILGRVDDMIISGGENIHP-------------SEIERVLGTAPGVTEVVVIGLADQ 438
Query: 163 VKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSGKIMRR 222
G+ + + P G T + + + + ++ F P +LPK K++RR
Sbjct: 439 RWGQSVTACVVPRLGETLSADALDTFCRS--SELADFKRPKRYFILDQLPKNALNKVLRR 496
Query: 223 VL 224
L
Sbjct: 497 QL 498
>pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QVY|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3,4- Dichlorobenzoate
Length = 504
Score = 32.3 bits (72), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 50/122 (40%), Gaps = 15/122 (12%)
Query: 103 DGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHP 162
+G + + GRVDDM+ G + +E+E L + P V+E V+
Sbjct: 392 EGTVRILGRVDDMIISGGENIHP-------------SEIERVLGTAPGVTEVVVIGLADQ 438
Query: 163 VKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSGKIMRR 222
G+ + + P G T + + + + ++ F P +LPK K++RR
Sbjct: 439 RWGQSVTACVVPRLGETLSADALDTFCRS--SELADFKRPKRYFILDQLPKNALNKVLRR 496
Query: 223 VL 224
L
Sbjct: 497 QL 498
>pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QW0|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, I303a Mutation,
Bound To 3,4 Dichlorobenzoate
Length = 504
Score = 32.3 bits (72), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 50/122 (40%), Gaps = 15/122 (12%)
Query: 103 DGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHP 162
+G + + GRVDDM+ G + +E+E L + P V+E V+
Sbjct: 392 EGTVRILGRVDDMIISGGENIHP-------------SEIERVLGTAPGVTEVVVIGLADQ 438
Query: 163 VKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSGKIMRR 222
G+ + + P G T + + + + ++ F P +LPK K++RR
Sbjct: 439 RWGQSVTACVVPRLGETLSADALDTFCRS--SELADFKRPKRYFILDQLPKNALNKVLRR 496
Query: 223 VL 224
L
Sbjct: 497 QL 498
>pdb|3PBK|A Chain A, Structural And Functional Studies Of Fatty Acyl-Adenylate
Ligases From E. Coli And L. Pneumophila
pdb|3PBK|B Chain B, Structural And Functional Studies Of Fatty Acyl-Adenylate
Ligases From E. Coli And L. Pneumophila
Length = 583
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 10/18 (55%), Positives = 15/18 (83%)
Query: 103 DGYLWVTGRVDDMLNVSG 120
DGYL+VTGR+ D++ + G
Sbjct: 450 DGYLYVTGRIKDLIIIRG 467
>pdb|3KTN|A Chain A, Crystal Structure Of A Putative 2-Keto-3-Deoxygluconate
Kinase From Enterococcus Faecalis
Length = 346
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 210 RLPKTRSGKIMRRVLRKVAVNDREVGDK 237
+LP R G+ + LRK+ ++D+ VG+K
Sbjct: 56 KLPANRLGEAGKAALRKLGISDQWVGEK 83
>pdb|2IF7|A Chain A, Crystal Structure Of Ntb-A
pdb|2IF7|B Chain B, Crystal Structure Of Ntb-A
pdb|2IF7|C Chain C, Crystal Structure Of Ntb-A
pdb|2IF7|D Chain D, Crystal Structure Of Ntb-A
Length = 193
Score = 27.3 bits (59), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 6/56 (10%)
Query: 22 FSFTVLGQVTVPQISILEPRLGDDLNLTLSMNPTLVGRRAMKSLKFQNTSKVRAQL 77
+F V + P+I + P+ G LN T S + L +LK ++T RAQ+
Sbjct: 40 LAFIVPHETKSPEIHVTNPKQGKRLNFTQSYSLQL------SNLKMEDTGSYRAQI 89
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,521,365
Number of Sequences: 62578
Number of extensions: 285036
Number of successful extensions: 670
Number of sequences better than 100.0: 51
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 587
Number of HSP's gapped (non-prelim): 51
length of query: 258
length of database: 14,973,337
effective HSP length: 97
effective length of query: 161
effective length of database: 8,903,271
effective search space: 1433426631
effective search space used: 1433426631
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)