Query psy12528
Match_columns 258
No_of_seqs 141 out of 1828
Neff 7.8
Searched_HMMs 29240
Date Fri Aug 16 21:38:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12528.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12528hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fuq_A Malonyl COA synthetase; 100.0 1.2E-32 4.1E-37 260.3 16.8 171 35-231 331-501 (503)
2 1pg4_A Acetyl-COA synthetase; 100.0 3.3E-32 1.1E-36 265.3 19.3 199 36-254 447-646 (652)
3 3ni2_A 4-coumarate:COA ligase; 100.0 2.8E-32 9.6E-37 259.5 17.3 169 35-229 366-534 (536)
4 1amu_A GRSA, gramicidin synthe 100.0 8.4E-33 2.9E-37 265.1 13.1 198 36-256 358-557 (563)
5 3etc_A AMP-binding protein; ad 100.0 4.9E-32 1.7E-36 260.8 17.4 172 36-230 405-579 (580)
6 1t5h_X 4-chlorobenzoyl COA lig 100.0 4.8E-31 1.6E-35 249.0 18.0 159 44-229 343-503 (504)
7 1ry2_A Acetyl-coenzyme A synth 100.0 1.7E-31 5.7E-36 260.9 13.7 198 36-252 454-660 (663)
8 2d1s_A Luciferase, luciferin 4 100.0 4.4E-31 1.5E-35 252.2 15.4 171 35-231 373-544 (548)
9 3g7s_A Long-chain-fatty-acid-- 100.0 6.9E-32 2.3E-36 257.5 9.5 176 35-232 367-544 (549)
10 3rg2_A Enterobactin synthase c 100.0 1E-30 3.5E-35 252.9 17.6 192 35-255 367-559 (617)
11 3e7w_A D-alanine--poly(phospho 100.0 2.7E-30 9.4E-35 244.2 19.3 177 35-233 329-506 (511)
12 4dg8_A PA1221; ANL superfamily 100.0 2.9E-31 9.8E-36 257.5 12.5 184 46-255 355-538 (620)
13 3r44_A Fatty acyl COA syntheta 100.0 1.3E-30 4.3E-35 247.2 16.3 152 52-231 363-514 (517)
14 3c5e_A Acyl-coenzyme A synthet 100.0 2.4E-30 8.2E-35 248.4 16.8 165 43-231 392-563 (570)
15 3fce_A D-alanine--poly(phospho 100.0 2E-30 7E-35 245.0 15.8 172 41-233 335-507 (512)
16 1mdb_A 2,3-dihydroxybenzoate-A 100.0 2E-30 6.7E-35 247.1 15.1 169 35-231 363-532 (539)
17 3nyq_A Malonyl-COA ligase; A/B 100.0 3.3E-30 1.1E-34 243.8 15.6 151 50-226 352-504 (505)
18 3l8c_A D-alanine--poly(phospho 100.0 2.3E-30 7.9E-35 244.9 12.8 172 42-233 339-515 (521)
19 2vsq_A Surfactin synthetase su 100.0 4.7E-30 1.6E-34 266.8 14.2 191 43-255 795-986 (1304)
20 3rix_A Luciferase, luciferin 4 100.0 4.4E-31 1.5E-35 252.0 5.7 171 36-232 372-543 (550)
21 3ivr_A Putative long-chain-fat 100.0 4E-31 1.4E-35 249.7 5.2 169 36-232 333-503 (509)
22 4gr5_A Non-ribosomal peptide s 100.0 6.8E-31 2.3E-35 251.8 6.8 174 36-228 395-569 (570)
23 2v7b_A Benzoate-coenzyme A lig 100.0 2.2E-29 7.5E-34 238.8 15.2 165 36-226 364-528 (529)
24 1v25_A Long-chain-fatty-acid-C 100.0 5.3E-30 1.8E-34 244.2 8.3 154 51-231 383-537 (541)
25 3o83_A Peptide arylation enzym 100.0 3.2E-30 1.1E-34 245.8 5.4 169 35-231 372-541 (544)
26 3tsy_A Fusion protein 4-coumar 100.0 5.3E-30 1.8E-34 259.6 6.8 171 35-231 413-583 (979)
27 3ipl_A 2-succinylbenzoate--COA 100.0 4.7E-29 1.6E-33 234.9 11.7 150 52-231 349-498 (501)
28 3ite_A SIDN siderophore synthe 100.0 8E-30 2.8E-34 243.5 3.9 175 36-232 359-545 (562)
29 3kxw_A Saframycin MX1 syntheta 99.9 5E-28 1.7E-32 231.8 10.0 180 35-232 383-569 (590)
30 4gs5_A Acyl-COA synthetase (AM 99.9 1E-27 3.5E-32 217.9 9.0 176 24-231 176-355 (358)
31 3gqw_A Fatty acid AMP ligase; 99.9 2E-26 6.7E-31 219.8 11.8 162 41-232 401-565 (576)
32 3qov_A Phenylacetate-coenzyme 99.9 1.5E-22 5.2E-27 187.4 9.3 120 88-222 297-429 (436)
33 2y4o_A Phenylacetate-coenzyme 99.9 5.1E-22 1.8E-26 184.2 9.3 122 89-223 305-437 (443)
34 2y27_A Phenylacetate-coenzyme 99.8 2.1E-21 7.2E-26 179.8 6.7 121 89-223 303-432 (437)
35 3lax_A Phenylacetate-coenzyme 99.6 5.8E-15 2E-19 111.7 8.4 95 110-221 1-101 (109)
36 3gxs_A Phenylacetate-coenzyme 99.5 3.5E-14 1.2E-18 107.5 9.4 95 110-222 1-102 (109)
37 3t5a_A Long-chain-fatty-acid-- 99.2 6.9E-12 2.3E-16 116.5 5.9 74 35-111 404-480 (480)
38 4eql_A 4-substituted benzoates 95.1 0.022 7.7E-07 54.4 5.5 44 92-148 400-447 (581)
39 4b2g_A GH3-1 auxin conjugating 95.1 0.049 1.7E-06 52.3 7.7 43 92-147 412-458 (609)
40 4epl_A Jasmonic acid-amido syn 94.3 0.11 3.9E-06 49.5 8.1 43 92-147 407-453 (581)
41 3hgu_A EHPF; phenazine, antibi 89.8 0.11 3.9E-06 45.8 1.8 31 91-121 329-368 (369)
42 2zzt_A Putative uncharacterize 24.7 1.8E+02 0.0062 20.3 8.2 58 140-197 14-73 (107)
No 1
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=100.00 E-value=1.2e-32 Score=260.27 Aligned_cols=171 Identities=22% Similarity=0.350 Sum_probs=156.0
Q ss_pred EEEEeCCCCCcCCCCCCCCCeEEeecccccccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeCCC
Q psy12528 35 ISILEPRLGDDLNLTLSMNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDD 114 (258)
Q Consensus 35 ~~i~~~~~g~~~~~~~~~~~~~~G~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~~d 114 (258)
+.|.+++++..++.+..|+..+.|+..+. ||+++++.++..|. .+|||+|||+|++|+||+|+|+||.||
T Consensus 331 ~~i~d~~~g~~~~~g~~GEl~v~g~~v~~--GY~~~~~~t~~~f~--------~~g~~~TGDl~~~~~dG~l~~~GR~dd 400 (503)
T 4fuq_A 331 ARVTDPETGKELPRGDIGMIEVKGPNVFK--GYWRMPEKTKSEFR--------DDGFFITGDLGKIDERGYVHILGRGKD 400 (503)
T ss_dssp EEEECTTTCCBCCTTCCEEEEEESTTSCC--CBTTCHHHHHHTBC--------TTSCEEEEEEEEECTTCEEEECCSSTT
T ss_pred EEEEECCCCCCCcCCCceEEEEECCchhh--hhcCChhhhHhhhC--------CCCCeEcceeEEEcCCCcEEEEecCCC
Confidence 46777788888888888888888877777 99999999999885 478999999999999999999999999
Q ss_pred eeEECcEEEEeeecccccCCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCCCccHHHHHHHHHHHHH
Q psy12528 115 MLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVRE 194 (258)
Q Consensus 115 ~i~~~G~~v~~~~~~~~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~ 194 (258)
+||++|++| +|. |||+.|.+||+|.+++|++.+++..++.++++++..++...+. +++++++++
T Consensus 401 ~ik~~G~~v---------~p~----eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~---~~l~~~l~~ 464 (503)
T 4fuq_A 401 LVITGGFNV---------YPK----EIESEIDAMPGVVESAVIGVPHADFGEGVTAVVVRDKGATIDE---AQVLHGLDG 464 (503)
T ss_dssp CEEETTEEE---------CHH----HHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCH---HHHHHHHBT
T ss_pred EEEECCEEE---------CHH----HHHHHHHhCCCeeEEEEEEeEchhcCceeEEEEEeCCCCCCCH---HHHHHHHHh
Confidence 999999999 999 9999999999999999999999888899999999987766654 689999999
Q ss_pred hcCCCCCCcEEEECCCCCCCCCCcccHHHHHHHHhcc
Q psy12528 195 KIGPFAMPDVIQHAPRLPKTRSGKIMRRVLRKVAVND 231 (258)
Q Consensus 195 ~l~~~~~p~~~~~~~~lP~t~~GKi~r~~l~~~~~~~ 231 (258)
+|+.|++|..+++++++|+|++||++|++|++++.+.
T Consensus 465 ~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~ 501 (503)
T 4fuq_A 465 QLAKFKMPKKVIFVDDLPRNTMGKVQKNVLRETYKDI 501 (503)
T ss_dssp TBCGGGCCSEEEEESCCCBCTTSCBCHHHHHHHTTTT
T ss_pred hcccCCCCCEEEEECCCCCCcccceeHHHHHHHHHHh
Confidence 9999999999999999999999999999999998654
No 2
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=100.00 E-value=3.3e-32 Score=265.25 Aligned_cols=199 Identities=42% Similarity=0.673 Sum_probs=159.0
Q ss_pred EEEeCCCCCcCCCCCCCCCeEEeecccccccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeCCCe
Q psy12528 36 SILEPRLGDDLNLTLSMNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDDM 115 (258)
Q Consensus 36 ~i~~~~~g~~~~~~~~~~~~~~G~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~~d~ 115 (258)
.|.++ +|..++.+..|+..+.|..+....||+++++.+...|.. ..+|||+|||+|++|+||+|+|+||.||+
T Consensus 447 ~i~d~-~g~~v~~g~~GEl~i~g~~p~~~~gY~~~~e~~~~~~~~------~~~g~y~TGDlg~~d~dG~l~i~GR~dd~ 519 (652)
T 1pg4_A 447 ALVDN-EGHPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFS------TFKNMYFSGDGARRDEDGYYWITGRVDDV 519 (652)
T ss_dssp EEECT-TCCBCCSSEEEEEEECSCCTTCCCEETTCHHHHHHHHHS------SSTTSEEEEEEEEECTTSCEEEEEESSSE
T ss_pred EEECC-CCCCcCCCceEEEEEccCCCchhhhhcCCHHHHHhhhhh------cCCCEEECCcEEEEcCCCcEEEEecCCCE
Confidence 44443 355555544444444442112225999999988666531 24689999999999999999999999999
Q ss_pred eEECcEEEEeeecccccCCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCCCccHHHHHHHHHHHHHh
Q psy12528 116 LNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREK 195 (258)
Q Consensus 116 i~~~G~~v~~~~~~~~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~ 195 (258)
||++|++| +|. |||++|.+||+|.+|+|++.+++..++.++++|++.++...++++.++|+++|+++
T Consensus 520 Ik~~G~rI---------~~~----eIE~~l~~~p~V~ea~Vvg~~~~~~g~~l~a~Vv~~~~~~~~~~~~~~l~~~l~~~ 586 (652)
T 1pg4_A 520 LNVSGHRL---------GTA----EIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKE 586 (652)
T ss_dssp EEETTEEE---------EHH----HHHHHHHHSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHH
T ss_pred EEECCEEE---------CHH----HHHHHHHhCCCcceEEEEEEEcCCCCeEEEEEEEECCCCCCCHHHHHHHHHHHHHh
Confidence 99999999 999 99999999999999999999998888999999999877666666778999999999
Q ss_pred cCCCCCCcEEEECCCCCCCCCCcccHHHHHHHHhccc-ccCCCCCCCchHHHHHHHHHcc
Q psy12528 196 IGPFAMPDVIQHAPRLPKTRSGKIMRRVLRKVAVNDR-EVGDKSTLADEDVVDELFQNRP 254 (258)
Q Consensus 196 l~~~~~p~~~~~~~~lP~t~~GKi~r~~l~~~~~~~~-~~~~~~~~~~~~~l~~l~~~~~ 254 (258)
|+++++|..++++++||+|++|||+|+.|++++.++. ..++.++..+++.++++.+.+.
T Consensus 587 l~~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~~~~~~~~~~~l~~p~~~~~~~~~~~ 646 (652)
T 1pg4_A 587 IGPLATPDVLHWTDSLPKTRSGKIMRRILRKIAAGDTSNLGDTSTLADPGVVEKLLEEKQ 646 (652)
T ss_dssp TCGGGCCSEEEECSCCCBCTTSCBCHHHHHHHHHTC----------CCTTHHHHHHHHHH
T ss_pred CCCCcCCeEEEEcCCCCCCCCccchHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHhh
Confidence 9999999999999999999999999999999998762 3688899999999998876654
No 3
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=100.00 E-value=2.8e-32 Score=259.49 Aligned_cols=169 Identities=22% Similarity=0.365 Sum_probs=151.7
Q ss_pred EEEEeCCCCCcCCCCCCCCCeEEeecccccccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeCCC
Q psy12528 35 ISILEPRLGDDLNLTLSMNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDD 114 (258)
Q Consensus 35 ~~i~~~~~g~~~~~~~~~~~~~~G~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~~d 114 (258)
+.|.+++++..++.+..|+..+.|...+. ||+++++.++..|. .+|||+|||+|++|+||+|+|+||.||
T Consensus 366 ~~i~d~~~~~~~~~g~~GEl~v~g~~v~~--GY~~~p~~t~~~~~--------~~g~~~TGDl~~~~~dG~l~~~GR~dd 435 (536)
T 3ni2_A 366 MKIVDPETGASLPRNQPGEICIRGDQIMK--GYLNDPEATSRTID--------KEGWLHTGDIGYIDDDDELFIVDRLKE 435 (536)
T ss_dssp EEEECTTTCCBCCTTCCEEEEEESTTSCS--EETTCHHHHHHHBC--------TTSCEEEEEEEEECTTSCEEEEEECSC
T ss_pred EEEEeCCCCcCCCCCCccEEEEeCcccch--hhcCChhHHHhhcc--------CCCceEcccEEEEcCCceEEEEecccc
Confidence 35667777888888888887777777777 99999999999884 479999999999999999999999999
Q ss_pred eeEECcEEEEeeecccccCCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCCCccHHHHHHHHHHHHH
Q psy12528 115 MLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVRE 194 (258)
Q Consensus 115 ~i~~~G~~v~~~~~~~~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~ 194 (258)
+||++|++| +|. +||+.|.+||+|.+|+|++.+++..++.++++++..++...+. +++++++++
T Consensus 436 ~ik~~G~~v---------~p~----eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~~---~~l~~~l~~ 499 (536)
T 3ni2_A 436 LIKYKGFQV---------APA----ELEALLIAHPEISDAAVVGLKDEDAGEVPVAFVVKSEKSQATE---DEIKQYISK 499 (536)
T ss_dssp CEEETTEEE---------CHH----HHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCH---HHHHHHHHT
T ss_pred eEEECCEEE---------CHH----HHHHHHHhCCCcceEEEEeeecCCCCceeEEEEEecCCCCCCH---HHHHHHHHH
Confidence 999999999 999 9999999999999999999999888899999999887665554 689999999
Q ss_pred hcCCCCCCcEEEECCCCCCCCCCcccHHHHHHHHh
Q psy12528 195 KIGPFAMPDVIQHAPRLPKTRSGKIMRRVLRKVAV 229 (258)
Q Consensus 195 ~l~~~~~p~~~~~~~~lP~t~~GKi~r~~l~~~~~ 229 (258)
+++.+++|..+++++++|+|++|||+|++|++++.
T Consensus 500 ~l~~~~~p~~i~~v~~lP~t~~GKi~R~~L~~~~~ 534 (536)
T 3ni2_A 500 QVIFYKRIKRVFFIEAIPKAPSGKILRKNLKEKLA 534 (536)
T ss_dssp TSCGGGCCSEEEECSCCCBCTTSCBCHHHHHTC--
T ss_pred hccCCccccEEEEEecCCCCCCCCeeHHHHHHHhc
Confidence 99999999999999999999999999999998764
No 4
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=99.98 E-value=8.4e-33 Score=265.09 Aligned_cols=198 Identities=19% Similarity=0.226 Sum_probs=146.4
Q ss_pred EEEeCCCCCcCCCCCCCCCeEEeecccccccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeCCCe
Q psy12528 36 SILEPRLGDDLNLTLSMNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDDM 115 (258)
Q Consensus 36 ~i~~~~~g~~~~~~~~~~~~~~G~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~~d~ 115 (258)
.|.+ +++..++.+..|+..+.|+.++. ||+++++.|+..|...+ + ...++||+|||+|++|+||+|+|+||.||+
T Consensus 358 ~i~d-~~~~~~~~g~~GEl~v~g~~v~~--GY~~~pe~t~~~f~~~~-~-~~g~~w~~TGDlg~~d~dG~l~i~GR~~d~ 432 (563)
T 1amu_A 358 YIVD-ENLQLKSVGEAGELCIGGEGLAR--GYWKRPELTSQKFVDNP-F-VPGEKLYKTGDQARWLSDGNIEYLGRIDNQ 432 (563)
T ss_dssp EEEC-TTSCBCCTTCEEEEEEEETTCCC--EETTCHHHHHHHEEECS-S-STTSEEEEEEEEEEECTTSCEEEEEEGGGE
T ss_pred EEEC-CCcCCCCCCCcEEEEEechhhCh--hhCCCchhhhhhcccCC-C-CCCCEEEecCCEEEEcCCCeEEEeccccCE
Confidence 4444 34566666777777777777666 99999999999996432 1 134679999999999999999999999999
Q ss_pred eEECcEEEEeeecccccCCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCCCccHHHHHHHHHHHHHh
Q psy12528 116 LNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREK 195 (258)
Q Consensus 116 i~~~G~~v~~~~~~~~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~ 195 (258)
||++|++| +|. +||+.|.+||+|.+|+|++.++...++.++++++.... .+ .++|+++++++
T Consensus 433 Ik~~G~~V---------~p~----eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~--~~---~~~l~~~l~~~ 494 (563)
T 1amu_A 433 VKIRGHRV---------ELE----EVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSEKH--IP---LEQLRQFSSEE 494 (563)
T ss_dssp EEETTEEE---------EHH----HHHHHHTTSTTEEEEEEEEEECTTSCEEEEEEEEESSC--CC---HHHHHHHHHHH
T ss_pred EEECCEEe---------CHH----HHHHHHHhCCCcceEEEEEeecCCCCeEEEEEEEeCCC--CC---HHHHHHHHHhh
Confidence 99999999 999 99999999999999999999988888889999987643 23 26899999999
Q ss_pred cCCCCCCcEEEECCCCCCCCCCcccHHHHHHHHhcccc--cCCCCCCCchHHHHHHHHHccCC
Q psy12528 196 IGPFAMPDVIQHAPRLPKTRSGKIMRRVLRKVAVNDRE--VGDKSTLADEDVVDELFQNRPEG 256 (258)
Q Consensus 196 l~~~~~p~~~~~~~~lP~t~~GKi~r~~l~~~~~~~~~--~~~~~~~~~~~~l~~l~~~~~~~ 256 (258)
|+.|++|..+++++++|+|++|||+|++|++....... ....|.++.|+.+.+||++++..
T Consensus 495 L~~y~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~~~~~~~~p~~~~e~~l~~iw~~~L~~ 557 (563)
T 1amu_A 495 LPTYMIPSYFIQLDKMPLTSNGKIDRKQLPEPDLTFGMRVDYEAPRNEIEETLVTIWQDVLGS 557 (563)
T ss_dssp SCGGGSCSEEEECSSCCBCTTSSBCGGGSCCCCCCC---------------------------
T ss_pred CchhhCCcEEEEecccCCCCCcChhHHhcCCcccccccccccCCCCCHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999876543211 23567888999999999998864
No 5
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=99.98 E-value=4.9e-32 Score=260.76 Aligned_cols=172 Identities=28% Similarity=0.438 Sum_probs=132.4
Q ss_pred EEEeCCCCCcCCCCCCCCCeEEe---ecccccccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeC
Q psy12528 36 SILEPRLGDDLNLTLSMNPTLVG---RRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRV 112 (258)
Q Consensus 36 ~i~~~~~g~~~~~~~~~~~~~~G---~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~ 112 (258)
.|.++ +|..++.+..|+..+.| +.+....||+++++.++..|. +|||+|||+|++|+||+|+|+||.
T Consensus 405 ~ivd~-~g~~~~~g~~GEl~v~~~~g~~~~~~~gY~~~p~~t~~~f~---------~gwy~TGDlg~~d~dG~l~~~GR~ 474 (580)
T 3etc_A 405 ELMDR-DGRLCEVGEEGEIVINTMEGKPVGLFVHYGKDPERTEETWH---------DGYYHTGDMAWMDEDGYLWFVGRA 474 (580)
T ss_dssp EEECT-TSCBCCTTCCEEEEEECTTCCCTTCCCEETTCHHHHHHHEE---------TTEEEEEEEEEECTTSCEEEEEES
T ss_pred EEECC-CCCCCCCCCceEEEEecCCCCCCeeeccccCCHhHHHhhcC---------CCEEecCcEEEECCCCcEEEEecC
Confidence 45554 36677777767666654 112222499999999999995 689999999999999999999999
Q ss_pred CCeeEECcEEEEeeecccccCCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCCCccHHHHHHHHHHH
Q psy12528 113 DDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQV 192 (258)
Q Consensus 113 ~d~i~~~G~~v~~~~~~~~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l 192 (258)
||+||++|++| +|. |||++|.+||+|.+|+|++.+++..++.+.++|++.++....+.+.++|++++
T Consensus 475 dd~Ik~~G~~I---------~p~----eIE~~l~~~p~V~~a~Vvg~~~~~~g~~~~a~vv~~~~~~~~~~~~~~l~~~l 541 (580)
T 3etc_A 475 DDIIKTSGYKV---------GPF----EVESALIQHPAVLECAITGVPDPVRGQVIKATIVLTKDYTPSDSLKNELQDHV 541 (580)
T ss_dssp SSCEEETTEEE---------CHH----HHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHHHH
T ss_pred CCEEEECCEEE---------CHH----HHHHHHHhCCCeeeEEEEeeeccCCCcEEEEEEEECCCCCCCHHHHHHHHHHH
Confidence 99999999999 999 99999999999999999999999889999999999888766777778999999
Q ss_pred HHhcCCCCCCcEEEECCCCCCCCCCcccHHHHHHHHhc
Q psy12528 193 REKIGPFAMPDVIQHAPRLPKTRSGKIMRRVLRKVAVN 230 (258)
Q Consensus 193 ~~~l~~~~~p~~~~~~~~lP~t~~GKi~r~~l~~~~~~ 230 (258)
+++++++++|+.++++++||+|++|||+|++|++++.+
T Consensus 542 ~~~l~~~~~P~~i~~v~~lP~t~sGKi~R~~Lr~~~~~ 579 (580)
T 3etc_A 542 KNVTAPYKYPRIIEFVPELPKTISGKIRRVEIRDKDQS 579 (580)
T ss_dssp HHHSCGGGCCSEEEEECC--------------------
T ss_pred HhhCCCccCCeEEEEeCCCCCCCCcCCcHHHHHhHhhc
Confidence 99999999999999999999999999999999998764
No 6
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=99.97 E-value=4.8e-31 Score=249.05 Aligned_cols=159 Identities=22% Similarity=0.312 Sum_probs=138.2
Q ss_pred CcCCCCCCCCCeEE-eecccccccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeCCCeeEECcEE
Q psy12528 44 DDLNLTLSMNPTLV-GRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDDMLNVSGHL 122 (258)
Q Consensus 44 ~~~~~~~~~~~~~~-G~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~~d~i~~~G~~ 122 (258)
..++.+..|+..+. |...+ .||+++++.++..|. +|||+|||+|++|+||+|+|+||.||+||++|++
T Consensus 343 ~~~~~g~~GEl~v~gg~~~~--~GY~~~~~~t~~~f~---------~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~ 411 (504)
T 1t5h_X 343 EIVANGEEGELIVAASDSAF--VGYLNQPQATAEKLQ---------DGWYRTSDVAVWTPEGTVRILGRVDDMIISGGEN 411 (504)
T ss_dssp CBCCTTCCEEEEEECCTTSC--CCBTTCHHHHHHHEE---------TTEEEEEEEEEECTTSCEEEEEEGGGCEEETTEE
T ss_pred CcCCCCCcceEEEeCCceee--ceecCCchhhhhhhc---------CCccccCcEEEECCCceEEEeCcccCEEEECCEE
Confidence 33444444444444 33444 499999999999884 6899999999999999999999999999999999
Q ss_pred EEeeecccccCCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCCCccHHHHHHHHHHHHH-hcCCCCC
Q psy12528 123 MTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVRE-KIGPFAM 201 (258)
Q Consensus 123 v~~~~~~~~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~-~l~~~~~ 201 (258)
| +|. +||+.|.+||+|.+|+|++.+++..++.++++|++..+...+. +++++++++ +|+.|++
T Consensus 412 v---------~p~----eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~~---~~l~~~~~~~~L~~~~~ 475 (504)
T 1t5h_X 412 I---------HPS----EIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSA---DALDTFCRSSELADFKR 475 (504)
T ss_dssp E---------CHH----HHHHHHTTSTTEEEEEEEEEECSSSSEEEEEEEEECTTCCCCH---HHHHHHHHTSSCCGGGS
T ss_pred E---------CHH----HHHHHHHhCCCcceEEEEEeecCCCCcEEEEEEEecCCcCcCH---HHHHHHHhhccCccccc
Confidence 9 999 9999999999999999999999888899999999887655543 688999998 8999999
Q ss_pred CcEEEECCCCCCCCCCcccHHHHHHHHh
Q psy12528 202 PDVIQHAPRLPKTRSGKIMRRVLRKVAV 229 (258)
Q Consensus 202 p~~~~~~~~lP~t~~GKi~r~~l~~~~~ 229 (258)
|+.+++++++|+|++|||+|++|++++.
T Consensus 476 P~~i~~v~~lP~t~~GKi~r~~L~~~~~ 503 (504)
T 1t5h_X 476 PKRYFILDQLPKNALNKVLRRQLVQQVS 503 (504)
T ss_dssp CSEEEECSCCCBCTTSCBCHHHHHHHHC
T ss_pred ceEEEEhhhCCCCCCCCEeHHHHHHHhc
Confidence 9999999999999999999999999874
No 7
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=99.97 E-value=1.7e-31 Score=260.89 Aligned_cols=198 Identities=34% Similarity=0.547 Sum_probs=149.8
Q ss_pred EEEeCCCCCcCCC-CCCCCCeEEeecccccccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeCCC
Q psy12528 36 SILEPRLGDDLNL-TLSMNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDD 114 (258)
Q Consensus 36 ~i~~~~~g~~~~~-~~~~~~~~~G~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~~d 114 (258)
.|.++++|..++. +..|+..+.|..+....||+++++.+...|.. ..+|||+|||+|++|+||+|+|+||.||
T Consensus 454 ~i~d~~~g~~v~~~g~~Gel~i~g~~p~~~~gy~~~~~~~~~~~~~------~~~g~y~TGDlg~~d~dG~l~i~GR~dd 527 (663)
T 1ry2_A 454 VVLDPNTGEELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLN------PYPGYYFTGDGAAKDKDGYIWILGRVDD 527 (663)
T ss_dssp EEECSSSTTCEECSSCEEEEEESSCCTTSCCEETTCHHHHHHHHTS------SSTTSEEEEEEEEECTTCCEEECSCTTS
T ss_pred EEEcCCCCCcCCCCCcceEEEEecCCCchhcccccChHHHHHhhhc------CCCCEEEcCCEEEEcCCCCEEEEeecCC
Confidence 4555434555544 44444444342112235999999988776632 2478999999999999999999999999
Q ss_pred eeEECcEEEEeeecccccCCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCCC---c-cH---HHHHH
Q psy12528 115 MLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGAT---F-NQ---ELVKQ 187 (258)
Q Consensus 115 ~i~~~G~~v~~~~~~~~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~~---~-~~---~~~~~ 187 (258)
+||++|++| +|. |||++|.+||.|.+|+|++.+++..++.++++|++.++.. . ++ ++.++
T Consensus 528 ~Ik~~G~rI---------~~~----eIE~~l~~~p~V~ea~Vvg~~~~~~g~~~~a~Vv~~~~~~~~~~~~~~~~~l~~~ 594 (663)
T 1ry2_A 528 VVNVSGHRL---------STA----EIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKSSWSTATDDELQDIKKH 594 (663)
T ss_dssp CBCSSSCCB---------CHH----HHHHHHHSSTTEEEEEEECCCCCTTSCCCEEEEEEC------------CCSHHHH
T ss_pred EEEECCEEc---------CHH----HHHHHHHhCCCcceEEEEEEecCCCCeEEEEEEEEcCCCccccccchhHHHHHHH
Confidence 999999999 999 9999999999999999999998888889999999876543 2 22 35678
Q ss_pred HHHHHHHhcCCCCCCcEEEECCCCCCCCCCcccHHHHHHHHhccc-ccCCCCCCCchHHHHHHHHH
Q psy12528 188 LKQQVREKIGPFAMPDVIQHAPRLPKTRSGKIMRRVLRKVAVNDR-EVGDKSTLADEDVVDELFQN 252 (258)
Q Consensus 188 l~~~l~~~l~~~~~p~~~~~~~~lP~t~~GKi~r~~l~~~~~~~~-~~~~~~~~~~~~~l~~l~~~ 252 (258)
|+++++++++++++|..++++++||+|++|||+|+.|++++.++. ..++.++..+++.++++.+.
T Consensus 595 l~~~l~~~L~~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~~~~~~~~~~~l~~p~~~~~~~~~ 660 (663)
T 1ry2_A 595 LVFTVRKDIGPFAAPKLIILVDDLPKTRSGKIMRRILRKILAGESDQLGDVSTLSNPGIVRHLIDS 660 (663)
T ss_dssp HHHHHHHHTCTTTSCSEEEECSCCCBCTTSCBCHHHHHHSCC-------------CCHHHHHHHHT
T ss_pred HHHHHHHhCCCCcCCeEEEEcCCCCCCCccCchHHHHHHHHcCCCCCCCCcccccCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999987752 36889999999999998663
No 8
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=99.97 E-value=4.4e-31 Score=252.17 Aligned_cols=171 Identities=19% Similarity=0.300 Sum_probs=150.2
Q ss_pred EEEEeCCCCCcCCCCCCCCCeEEeecccccccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeCCC
Q psy12528 35 ISILEPRLGDDLNLTLSMNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDD 114 (258)
Q Consensus 35 ~~i~~~~~g~~~~~~~~~~~~~~G~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~~d 114 (258)
+.|.+++++..++.+..|+..+.|...+. ||+++++.++..|. .+|||+|||+|++|+||+|+|+||.||
T Consensus 373 ~~i~d~~~~~~~~~g~~GEl~v~g~~v~~--GY~~~~~~t~~~f~--------~~g~~~TGDl~~~~~dG~l~~~GR~~d 442 (548)
T 2d1s_A 373 AKVIDLDTKKSLGPNRRGEVCVKGPMLMK--GYVNNPEATKELID--------EEGWLHTGDIGYYDEEKHFFIVDRLKS 442 (548)
T ss_dssp EEEECTTTCCBCCTTCCEEEEEESTTSCS--EETTCHHHHHHHBC--------TTSCEEEEEEEEECTTCCEEEEEEGGG
T ss_pred EEEEeCCcCccCCCCCCeEEEECCHHHhh--hhcCChHHhhhccc--------CCcEEEccCEEEEcCCCeEEEeccccc
Confidence 34555566677777777776666666666 99999999999884 478999999999999999999999999
Q ss_pred eeEECcEEEEeeecccccCCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCCCccHHHHHHHHHHHHH
Q psy12528 115 MLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVRE 194 (258)
Q Consensus 115 ~i~~~G~~v~~~~~~~~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~ 194 (258)
+||++|++| +|. +||++|.+||+|.+|+|++.+++..++.++++|++.++...+. +++++++++
T Consensus 443 ~ik~~G~~v---------~p~----eIE~~l~~~p~V~~a~V~~~~~~~~g~~~~a~vv~~~~~~~~~---~~l~~~~~~ 506 (548)
T 2d1s_A 443 LIKYKGYQV---------PPA----ELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESGKNMTE---KEVMDYVAS 506 (548)
T ss_dssp CBCBTTCCB---------CHH----HHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCH---HHHHHHHHT
T ss_pred eEEECCEEE---------CHH----HHHHHHHhCCCccEEEEEEEEcCCCCeeeEEEEEEcCCCCCCH---HHHHHHHHH
Confidence 999999999 999 9999999999999999999999888889999999877654443 689999999
Q ss_pred hcCCCCCCc-EEEECCCCCCCCCCcccHHHHHHHHhcc
Q psy12528 195 KIGPFAMPD-VIQHAPRLPKTRSGKIMRRVLRKVAVND 231 (258)
Q Consensus 195 ~l~~~~~p~-~~~~~~~lP~t~~GKi~r~~l~~~~~~~ 231 (258)
+|+.+++|. .+++++++|+|++||++|++|++++.+.
T Consensus 507 ~l~~~~~p~~~i~~v~~lP~t~~GKi~r~~L~~~~~~~ 544 (548)
T 2d1s_A 507 QVSNAKRLRGGVRFVDEVPKGLTGKIDGRAIREILKKP 544 (548)
T ss_dssp TSCGGGSCTTCEEECSSCCBCTTSCBCHHHHHHHHHSC
T ss_pred hccccccccccEEEccCCCCCCcchhHHHHHHHHHhhh
Confidence 999999999 9999999999999999999999998654
No 9
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=99.97 E-value=6.9e-32 Score=257.49 Aligned_cols=176 Identities=23% Similarity=0.346 Sum_probs=112.9
Q ss_pred EEEEeCCCCCcCCCCCCCCCeEEeecccccccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeCCC
Q psy12528 35 ISILEPRLGDDLNLTLSMNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDD 114 (258)
Q Consensus 35 ~~i~~~~~g~~~~~~~~~~~~~~G~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~~d 114 (258)
+.|.+++++..++.+..|+..+.|+.++. ||+++++.++..|.... .+.+||+|||+|++|+||+|+|+||.||
T Consensus 367 ~~i~d~~~g~~~~~g~~GEl~v~g~~v~~--GY~~~~~~t~~~f~~~~----~g~~~~~TGDl~~~~~dG~l~~~GR~dd 440 (549)
T 3g7s_A 367 LKVISLEDGRELGVGESGEIVIRGPNIFK--GYWKREKENQECWWYDE----KGRKFFRTGDVGFIDEEGFLHFQDRVKE 440 (549)
T ss_dssp EEEECSSSCCEECTTCCEEEEEESTTSCS--EETTCTTGGGTSEEECT----TCCEEEEEEEEEEECTTSCEEEEEEC--
T ss_pred EEEEeCCCCcCCCCCCceEEEEECcchhh--hhCCChhhhhhhhhccC----CCCceEccCcEEEEcCCceEEEeccccc
Confidence 45667677888888888887777777776 99999999998884111 1234999999999999999999999999
Q ss_pred eeEECcEEEEeeecccccCCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCC--CCccHHHHHHHHHHH
Q psy12528 115 MLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGG--ATFNQELVKQLKQQV 192 (258)
Q Consensus 115 ~i~~~G~~v~~~~~~~~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~--~~~~~~~~~~l~~~l 192 (258)
+||++|++| +|. |||++|.+||+|.+|+|++.+++..++.+++++++.++ ...+. +++++++
T Consensus 441 ~ik~~G~~v---------~p~----eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~~---~~l~~~l 504 (549)
T 3g7s_A 441 VIKYKGYTI---------APF----ELEALLMKHEAVMDVAVIGKPDEEAGEVPKAFIVLKPEYRGKVDE---EDIIEWV 504 (549)
T ss_dssp -------------------CH----HHHHHHTTSTTEEEEEEECCCC------CEEEEEECSTTTTSCCH---HHHHHHH
T ss_pred eEEECCEEE---------CHH----HHHHHHHhCCCeeeEEEEeeEccccCceEEEEEEECCCccCcCCH---HHHHHHH
Confidence 999999999 999 99999999999999999999988888899999998765 33333 6899999
Q ss_pred HHhcCCCCCCcEEEECCCCCCCCCCcccHHHHHHHHhccc
Q psy12528 193 REKIGPFAMPDVIQHAPRLPKTRSGKIMRRVLRKVAVNDR 232 (258)
Q Consensus 193 ~~~l~~~~~p~~~~~~~~lP~t~~GKi~r~~l~~~~~~~~ 232 (258)
+++|+.|++|..++++++||+|++|||+|++|++.+....
T Consensus 505 ~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~~ 544 (549)
T 3g7s_A 505 RERISGYKRVREVEFVEELPRTASGKLLRRLLREKEAEGH 544 (549)
T ss_dssp HTTCC-----CCCCEEEECC--------------------
T ss_pred HHhccCcccceEEEEeccCCCCCCcCEeHHHHHHHhhccc
Confidence 9999999999999999999999999999999999887664
No 10
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=99.97 E-value=1e-30 Score=252.91 Aligned_cols=192 Identities=23% Similarity=0.307 Sum_probs=165.7
Q ss_pred EEEEeCCCCCcCCCCCCCCCeEEeecccccccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeCCC
Q psy12528 35 ISILEPRLGDDLNLTLSMNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDD 114 (258)
Q Consensus 35 ~~i~~~~~g~~~~~~~~~~~~~~G~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~~d 114 (258)
+.|.+ .++..++.+..|+..+.|..++. ||+++++.|+..|. .++||+|||+|++++||.|+++||.||
T Consensus 367 ~~i~d-~~~~~~p~G~~GEl~i~G~~v~~--GY~~~p~~t~~~f~--------~~~~yrTGDl~~~~~dG~l~~~GR~dd 435 (617)
T 3rg2_A 367 VWVAD-AEGNPLPQGEVGRLMTRGPYTFR--GYYKSPQHNASAFD--------ANGFYCSGDLISIDPEGYITVQGREKD 435 (617)
T ss_dssp EEEEC-TTSCBCCTTCCEEEEEECSSSCS--CCTTCHHHHHHHBC--------TTSCEEEEEEEEECTTSCEEEEEECSS
T ss_pred EEEEC-CCCCCCCCCCceEEEecCccccc--hhcCChhhhhhccC--------CCCceecCceEEEcCCceEEEEeecCC
Confidence 34444 45677888887777777777766 99999999999995 478999999999999999999999999
Q ss_pred eeEECcEEEEeeecccccCCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCCCccHHHHHHHHHHHHH
Q psy12528 115 MLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVRE 194 (258)
Q Consensus 115 ~i~~~G~~v~~~~~~~~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~ 194 (258)
+||++|++| +|. |||+.|.+||+|.+|+|++.++...++.++++++..+.. +. .++++++++
T Consensus 436 ~iki~G~ri---------~~~----eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~--~~---~~l~~~l~~ 497 (617)
T 3rg2_A 436 QINRGGEKI---------AAE----EIENLLLRHPAVIYAALVSMEDELMGEKSCAYLVVKEPL--RA---VQVRRFLRE 497 (617)
T ss_dssp EEEETTEEE---------EHH----HHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSCC--CH---HHHHHHHHT
T ss_pred EEEECCEEe---------CHH----HHHHHHHhCCCeeEEEEEeccCcccCeeEEEEEEeCCCC--CH---HHHHHHHHh
Confidence 999999999 999 999999999999999999999888888999999887632 22 578899998
Q ss_pred -hcCCCCCCcEEEECCCCCCCCCCcccHHHHHHHHhcccccCCCCCCCchHHHHHHHHHccC
Q psy12528 195 -KIGPFAMPDVIQHAPRLPKTRSGKIMRRVLRKVAVNDREVGDKSTLADEDVVDELFQNRPE 255 (258)
Q Consensus 195 -~l~~~~~p~~~~~~~~lP~t~~GKi~r~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 255 (258)
.++.|++|..+++++++|+|++||++|++|++++.+.......+....++.++++|+.++.
T Consensus 498 ~~lp~~~vP~~~~~v~~lP~t~~GKidR~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~ 559 (617)
T 3rg2_A 498 QGIAEFKLPDRVECVDSLPLTAVGKVDKKQLRQWLASRASAGRASIPASKAALREVILPLLD 559 (617)
T ss_dssp TTCCGGGSCSEEEECSCCCBCTTSSBCHHHHHHHHHHHHHHSSSCCCCSHHHHHHHHGGGSC
T ss_pred CCCccccCCcEEEEecccCCCCCCCCcHHHHHHHHhcccccccccccccHHHHHHHHHHHhc
Confidence 6999999999999999999999999999999998776544455556678899999998874
No 11
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=99.97 E-value=2.7e-30 Score=244.25 Aligned_cols=177 Identities=17% Similarity=0.217 Sum_probs=152.4
Q ss_pred EEEEeCCCCCcCCCCCCCCCeEEeecccccccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeCCC
Q psy12528 35 ISILEPRLGDDLNLTLSMNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDD 114 (258)
Q Consensus 35 ~~i~~~~~g~~~~~~~~~~~~~~G~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~~d 114 (258)
+.|.++ +|..++.++.|+..+.|+..+. ||+++++.++..|... .+..||+|||+|++ +||+|+++||.||
T Consensus 329 ~~i~d~-~g~~~~~g~~GEl~v~g~~v~~--GY~~~~~~t~~~f~~~-----~g~~~~~TGDlg~~-~dG~l~~~GR~~d 399 (511)
T 3e7w_A 329 IFIMDE-EGQPLPEGEKGEIVIAGPSVSR--GYLGEPELTEKAFFSH-----EGQWAYRTGDAGFI-QDGQIFCQGRLDF 399 (511)
T ss_dssp EEEECT-TSCBCCTTCCEEEEEESTTSCC--CBTTCHHHHHHHEEES-----SSSEEEEEEEEEEE-ETTEEEEEEESSS
T ss_pred EEEECC-CCCCCCCCCceEEEEecCccCh--hhCCCcccchhhhcCC-----CCCEEEeCCCeEEc-cCCeEEEEccccC
Confidence 345554 4777888887887777777776 9999999999988532 12347999999999 5999999999999
Q ss_pred eeEECcEEEEeeecccccCCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCCCcc-HHHHHHHHHHHH
Q psy12528 115 MLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFN-QELVKQLKQQVR 193 (258)
Q Consensus 115 ~i~~~G~~v~~~~~~~~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~l~~~l~ 193 (258)
+||++|++| +|. +||+.|.+||+|.+|+|++.++...++.+++++++.++.... .++.+.++++++
T Consensus 400 ~ik~~G~~v---------~p~----eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~~~~~~~~~~l~~~l~ 466 (511)
T 3e7w_A 400 QIKLHGYRM---------ELE----EIEFHVRQSQYVRSAVVIPYQPNGTVEYLIAAIVPEEHEFEKEFQLTSAIKKELA 466 (511)
T ss_dssp EEEETTEEE---------EHH----HHHHHHHHSTTEEEEEEEEECSSSSCCEEEEEEEECCCCCSSHHHHHHHHHHHHH
T ss_pred EEEECCEEe---------CHH----HHHHHHHhCCCcceEEEEEEcCCCCceEEEEEEEeccccccchhhHHHHHHHHHH
Confidence 999999999 999 999999999999999999998887888999999988765433 345678999999
Q ss_pred HhcCCCCCCcEEEECCCCCCCCCCcccHHHHHHHHhcccc
Q psy12528 194 EKIGPFAMPDVIQHAPRLPKTRSGKIMRRVLRKVAVNDRE 233 (258)
Q Consensus 194 ~~l~~~~~p~~~~~~~~lP~t~~GKi~r~~l~~~~~~~~~ 233 (258)
++|+.+++|..+++++++|+|++|||+|++|++.+.++..
T Consensus 467 ~~L~~~~~P~~~~~v~~lP~t~~GKi~R~~L~~~~~~~~~ 506 (511)
T 3e7w_A 467 ASLPAYMIPRKFIYQDHIQMTANGKIDRKRIGEEVLVRSH 506 (511)
T ss_dssp HHSCGGGSCSEEEECSCCCBCTTSCBCHHHHHHHHHHHHT
T ss_pred hhCchhhCCeeEEEeccCCCCCCcCccHHHHHhHHhhhcc
Confidence 9999999999999999999999999999999999988764
No 12
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=99.97 E-value=2.9e-31 Score=257.47 Aligned_cols=184 Identities=16% Similarity=0.162 Sum_probs=127.9
Q ss_pred CCCCCCCCCeEEeecccccccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeCCCeeEECcEEEEe
Q psy12528 46 LNLTLSMNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDDMLNVSGHLMTV 125 (258)
Q Consensus 46 ~~~~~~~~~~~~G~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~~d~i~~~G~~v~~ 125 (258)
++.+..|+..+.|..++. ||+++++.|+..|...+ +.....+||+|||+|++|+||+|+|+||.||+||++|++|
T Consensus 355 ~~~g~~GEl~i~G~~v~~--GY~~~p~~t~~~f~~~p-~~~~~~~~yrTGDl~~~~~dG~l~~~GR~dd~Ik~~G~ri-- 429 (620)
T 4dg8_A 355 AEPDRAGEIVAFGAGLAQ--GYRNDAARTRASFVELP-YRGRLLRAYRTGDRARYDEQGRLRFIGRGDGQVKLNGYRL-- 429 (620)
T ss_dssp CSSSCCEEEEEEETTCCS--EETTCHHHHHHHEEEEE-ETTEEEEEEEEEEEEEECTTSCEEEEECSSSEEEETTEEE--
T ss_pred CCCCCceEEEEecccccc--ccCCChhhhhhhhccCC-CCCCCceEEeCCCEEEECCCCeEEEEccCCCEEEECCEEc--
Confidence 566666777777766666 99999999999997543 2111127999999999999999999999999999999999
Q ss_pred eecccccCCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCCCccHHHHHHHHHHHHHhcCCCCCCcEE
Q psy12528 126 YFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVI 205 (258)
Q Consensus 126 ~~~~~~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~ 205 (258)
+|. |||+.|.+||+|.+|+|++.++...+.. +++++.... .+.+.+.++|+.|++|..+
T Consensus 430 -------~~~----eIE~~l~~~p~V~~a~Vv~~~~~~~~~l-v~~~~~~~~---------~~~~~l~~~Lp~y~~P~~~ 488 (620)
T 4dg8_A 430 -------DLP----ALEQRFRRQPGILDCALLVRERNGVKQL-LCAWTGKAD---------ASPQALLRQLPTWQRPHAC 488 (620)
T ss_dssp -------EHH----HHHHHHHTSTTEEEEEEEEEEETTEEEE-EEEEEECTT---------CCCHHHHHHSCGGGSCSEE
T ss_pred -------CHH----HHHHHHHhCCCccEEEEEEEeCCCceEE-EEEEecChH---------HHHHHHHHhChhhcCCcEE
Confidence 999 9999999999999999999887754444 444443321 2344567789999999999
Q ss_pred EECCCCCCCCCCcccHHHHHHHHhcccccCCCCCCCchHHHHHHHHHccC
Q psy12528 206 QHAPRLPKTRSGKIMRRVLRKVAVNDREVGDKSTLADEDVVDELFQNRPE 255 (258)
Q Consensus 206 ~~~~~lP~t~~GKi~r~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 255 (258)
++++++|+|++||++|++|++.+.+.......+.++.|..+.++|++++.
T Consensus 489 ~~v~~lP~t~~GKidR~~L~~~~~~~~~~~~~~~~~~e~~l~~iw~~vL~ 538 (620)
T 4dg8_A 489 VRVEALPLTAHGKLDRAALLRRLEEPLERCASALDPDQRGCAQLWSELLG 538 (620)
T ss_dssp EECSSCCCC----CCHHHHHHHTCSCC-----------------------
T ss_pred EEECcCCCCcccCHhHHHHhhccccccccccCCCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999988766544456667788899999999875
No 13
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=99.97 E-value=1.3e-30 Score=247.19 Aligned_cols=152 Identities=22% Similarity=0.363 Sum_probs=134.1
Q ss_pred CCCeEEeecccccccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeCCCeeEECcEEEEeeecccc
Q psy12528 52 MNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSY 131 (258)
Q Consensus 52 ~~~~~~G~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~~d~i~~~G~~v~~~~~~~~ 131 (258)
|+..+.|...+ .||+++++.++..|. +|||+|||+|++|+||+|+|+||.||+||++|++|
T Consensus 363 GEl~v~g~~v~--~GY~~~p~~t~~~f~---------~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v-------- 423 (517)
T 3r44_A 363 GEVVIKSDILL--KEYWNRPEATRDAFD---------NGWFRTGDIGEIDDEGYLYIKDRLKDMIISGGENV-------- 423 (517)
T ss_dssp EEEEEEETTSC--SEETTCHHHHHHTEE---------TTEEEEEEEEEECTTSCEEEEECGGGCEEETTEEE--------
T ss_pred eEEEEeCcchh--hhhCCChhhhHhhhc---------CCCEecceeEEEcCCeeEEEecCCcCEEEECCEEE--------
Confidence 44444444444 499999999999985 68999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCCCccHHHHHHHHHHHHHhcCCCCCCcEEEECCCC
Q psy12528 132 CSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRL 211 (258)
Q Consensus 132 ~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~l 211 (258)
+|. |||+.|.+||+|.+|+|++.+++..++.+++++ ..++...+. ++++++++++|+.|++|..+++++++
T Consensus 424 -~p~----eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~v-~~~~~~~~~---~~l~~~l~~~L~~~~~P~~i~~v~~l 494 (517)
T 3r44_A 424 -YPA----EIESVIIGVPGVSEVAVIGLPDEKWGEIAAAIV-VADQNEVSE---QQIVEYCGTRLARYKLPKKVIFAEAI 494 (517)
T ss_dssp -CHH----HHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEE-EECTTTCCH---HHHHHHHHHHSCGGGSCSEEEECSCC
T ss_pred -CHH----HHHHHHHhCCCEeEEEEEeccccccCceEEEEE-ECCCCCCCH---HHHHHHHHHhCCCCCCCCEEEEECCC
Confidence 999 999999999999999999999988888888888 444444443 68999999999999999999999999
Q ss_pred CCCCCCcccHHHHHHHHhcc
Q psy12528 212 PKTRSGKIMRRVLRKVAVND 231 (258)
Q Consensus 212 P~t~~GKi~r~~l~~~~~~~ 231 (258)
|+|++|||+|++|++++.+.
T Consensus 495 P~t~~GKi~R~~L~~~~~~~ 514 (517)
T 3r44_A 495 PRNPTGKILKTVLREQYSAT 514 (517)
T ss_dssp CBCTTCCBCHHHHHHHHGGG
T ss_pred CCCCCcCccHHHHHHHHHhh
Confidence 99999999999999998765
No 14
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=99.97 E-value=2.4e-30 Score=248.37 Aligned_cols=165 Identities=32% Similarity=0.460 Sum_probs=142.8
Q ss_pred CCcCCCCCCCCCeEE-----eecccccccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeCCCeeE
Q psy12528 43 GDDLNLTLSMNPTLV-----GRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDDMLN 117 (258)
Q Consensus 43 g~~~~~~~~~~~~~~-----G~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~~d~i~ 117 (258)
+..++.+..|+..+. |...+. ||+++++.++..|. ++||+|||++++|+||+|+|+||.||+||
T Consensus 392 g~~~~~G~~GEl~v~~~~~~g~~v~~--GY~~~~~~t~~~f~---------~~~~~TGDlg~~d~dG~l~~~GR~dd~Ik 460 (570)
T 3c5e_A 392 GNVLPPGTEGDIGIRVKPIRPIGIFS--GYVDNPDKTAANIR---------GDFWLLGDRGIKDEDGYFQFMGRADDIIN 460 (570)
T ss_dssp SCBCCTTCCEEEEEECSSBCCTTCCC--EETTCHHHHHHTEE---------TTEEEEEEEEEECTTSCEEEEEEGGGCEE
T ss_pred CCCCCCCCCCeeEEeccCCCCchhhc--cccCChhHhhhhhc---------CCccccceeEEEcCCceEEEEecCCCEEE
Confidence 555665655655555 444444 99999999999885 68999999999999999999999999999
Q ss_pred ECcEEEEeeecccccCCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCC--CccHHHHHHHHHHHHHh
Q psy12528 118 VSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGA--TFNQELVKQLKQQVREK 195 (258)
Q Consensus 118 ~~G~~v~~~~~~~~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~--~~~~~~~~~l~~~l~~~ 195 (258)
++|++| +|. +||+.|.+||+|.+|+|++.+++..++.++++|++.++. ...+.+.++|+++++++
T Consensus 461 ~~G~~V---------~p~----eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~~~~~~~l~~~l~~~ 527 (570)
T 3c5e_A 461 SSGYRI---------GPS----EVENALMEHPAVVETAVISSPDPVRGEVVKAFVVLASQFLSHDPEQLTKELQQHVKSV 527 (570)
T ss_dssp ETTEEE---------CHH----HHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECGGGTTSCHHHHHHHHHHHHHHH
T ss_pred ECCEEE---------CHH----HHHHHHHhCCCcceEEEEeeeCCCCCeEEEEEEEECCcccCcchHHHHHHHHHHHHhh
Confidence 999999 999 999999999999999999999888888999999987653 23344567899999999
Q ss_pred cCCCCCCcEEEECCCCCCCCCCcccHHHHHHHHhcc
Q psy12528 196 IGPFAMPDVIQHAPRLPKTRSGKIMRRVLRKVAVND 231 (258)
Q Consensus 196 l~~~~~p~~~~~~~~lP~t~~GKi~r~~l~~~~~~~ 231 (258)
|+.|++|..+++++++|+|++||++|++|++.+...
T Consensus 528 L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~ 563 (570)
T 3c5e_A 528 TAPYKYPRKIEFVLNLPKTVTGKIQRAKLRDKEWKM 563 (570)
T ss_dssp SCGGGSCSEEEEESCCCBCTTCCBCHHHHHHHHTC-
T ss_pred CccccCCcEEEEeccCCCCCCcCCcHHHHHHHHHhh
Confidence 999999999999999999999999999999987544
No 15
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=99.97 E-value=2e-30 Score=245.02 Aligned_cols=172 Identities=17% Similarity=0.218 Sum_probs=148.6
Q ss_pred CCCCcCCCCCCCCCeEEeecccccccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeCCCeeEECc
Q psy12528 41 RLGDDLNLTLSMNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDDMLNVSG 120 (258)
Q Consensus 41 ~~g~~~~~~~~~~~~~~G~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~~d~i~~~G 120 (258)
++|..++.+..|+..+.|+..+. ||+++++.++..|.. .+.++||+|||+|++ +||+|+|+||.||+||++|
T Consensus 335 ~~g~~~~~g~~GEl~v~g~~v~~--GY~~~~~~t~~~f~~-----~~~~~~~~TGDlg~~-~dG~l~i~GR~~d~ik~~G 406 (512)
T 3fce_A 335 EDGTIAPDGEKGEIVIVGPSVSV--GYLGSPELTEKAFTM-----IDGERAYKTGDAGYV-ENGLLFYNGRLDFQIKLHG 406 (512)
T ss_dssp SSSCBCCTTSCEEEEEESTTSCS--CBTTCHHHHHHHEEE-----ETTEEEEEEEEEEEE-ETTEEEEEEEGGGCEEETT
T ss_pred CCCCCCCCCCeEEEEEeccccCh--hhcCCchhhhhcccc-----CCCCEEEeCCceEEe-cCCEEEEecccCCEEEECC
Confidence 45677777777777777776666 999999999998852 134689999999999 7999999999999999999
Q ss_pred EEEEeeecccccCCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCCCcc-HHHHHHHHHHHHHhcCCC
Q psy12528 121 HLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFN-QELVKQLKQQVREKIGPF 199 (258)
Q Consensus 121 ~~v~~~~~~~~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~l~~~l~~~l~~~ 199 (258)
++| +|. +||+.|.+||+|.+|+|++.++...++.+++++++.+..... ..+.++++++++++|+.+
T Consensus 407 ~~v---------~p~----eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~~~~~~~~~~l~~~l~~~L~~~ 473 (512)
T 3fce_A 407 YRM---------ELE----EIEHHLRACSYVEGAVIVPIKKGEKYDYLLAVVVPGEHSFEKEFKLTSAIKKELNERLPNY 473 (512)
T ss_dssp EEE---------CHH----HHHHHHHHSTTEEEEEEEEEEETTEEEEEEEEEEECSCCCSSHHHHHHHHHHHHHTTSCGG
T ss_pred EEE---------CHH----HHHHHHHhCCCcceEEEEEEecCCCceEEEEEEecCCccccchhhhHHHHHHHHHhhCchh
Confidence 999 999 999999999999999999999888788899999987654333 345678999999999999
Q ss_pred CCCcEEEECCCCCCCCCCcccHHHHHHHHhcccc
Q psy12528 200 AMPDVIQHAPRLPKTRSGKIMRRVLRKVAVNDRE 233 (258)
Q Consensus 200 ~~p~~~~~~~~lP~t~~GKi~r~~l~~~~~~~~~ 233 (258)
++|..+++++++|+|++|||+|++|++.+.++.+
T Consensus 474 ~~P~~~~~~~~lP~t~~GKi~R~~L~~~~~~~~~ 507 (512)
T 3fce_A 474 MIPRKFMYQSSIPMTPNGKVDRKKLLSEVTALEH 507 (512)
T ss_dssp GSCSEEEECSCCCBCTTSSBCHHHHHHHHHC---
T ss_pred cCCeEEEEecccCCCCCcChHHHHHHhhhhhccc
Confidence 9999999999999999999999999999988763
No 16
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=99.97 E-value=2e-30 Score=247.07 Aligned_cols=169 Identities=25% Similarity=0.397 Sum_probs=147.2
Q ss_pred EEEEeCCCCCcCCCCCCCCCeEEeecccccccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeCCC
Q psy12528 35 ISILEPRLGDDLNLTLSMNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDD 114 (258)
Q Consensus 35 ~~i~~~~~g~~~~~~~~~~~~~~G~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~~d 114 (258)
+.|.+ +++..++.+..|+..+.|+.++. ||+++++.++..|. .+|||+|||+|++|+||+|+|+||.||
T Consensus 363 ~~i~d-~~~~~~~~g~~GEl~v~g~~v~~--GY~~~~~~t~~~f~--------~~g~~~TGDlg~~~~dG~l~~~GR~dd 431 (539)
T 1mdb_A 363 SRVWD-DHDRDVKPGETGHLLTRGPYTIR--GYYKAEEHNAASFT--------EDGFYRTGDIVRLTRDGYIVVEGRAKD 431 (539)
T ss_dssp EEEEC-TTSCBCCTTCCEEEEEECTTSCS--SCTTCHHHHHHHBC--------TTSCEEEEEEEEECTTSCEEEEEEGGG
T ss_pred EEEEC-CCCCCCcCCCcceEEeeCcccch--hhcCChhhhhhhcc--------CCCCeecCceEEECCCCcEEEeccccc
Confidence 34444 34666777777777777776666 99999999999885 478999999999999999999999999
Q ss_pred eeEECcEEEEeeecccccCCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCCCccHHHHHHHHHHHHH
Q psy12528 115 MLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVRE 194 (258)
Q Consensus 115 ~i~~~G~~v~~~~~~~~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~ 194 (258)
+||++|++| +|. +||+.|.+||+|.+|+|++.+++..++.+++++++... ..+. +++++++++
T Consensus 432 ~ik~~G~~v---------~p~----eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~-~~~~---~~l~~~l~~ 494 (539)
T 1mdb_A 432 QINRGGEKV---------AAE----EVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRDE-APKA---AELKAFLRE 494 (539)
T ss_dssp CEECSSCEE---------CHH----HHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSS-CCCH---HHHHHHHHH
T ss_pred eEEECCEEE---------CHH----HHHHHHHhCCCcceEEEEeccccccCceEEEEEEECCC-CCCH---HHHHHHHHh
Confidence 999999999 999 99999999999999999999998888899999988743 2332 689999999
Q ss_pred h-cCCCCCCcEEEECCCCCCCCCCcccHHHHHHHHhcc
Q psy12528 195 K-IGPFAMPDVIQHAPRLPKTRSGKIMRRVLRKVAVND 231 (258)
Q Consensus 195 ~-l~~~~~p~~~~~~~~lP~t~~GKi~r~~l~~~~~~~ 231 (258)
+ |+.|++|..+++++++|+|++||++|++|++++.+.
T Consensus 495 ~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~ 532 (539)
T 1mdb_A 495 RGLAAYKIPDRVEFVESFPQTGVGKVSKKALREAISEK 532 (539)
T ss_dssp TTCCGGGSCSEEEECSSCCBCTTSCBCHHHHHHHHHHH
T ss_pred CCCCcccCCCEEEEeccCCCCCCcCEeHHHHHHHHHHH
Confidence 8 999999999999999999999999999999988654
No 17
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=99.97 E-value=3.3e-30 Score=243.78 Aligned_cols=151 Identities=28% Similarity=0.461 Sum_probs=120.0
Q ss_pred CCCCCeEEeecccccccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeC-CCeeEECcEEEEeeec
Q psy12528 50 LSMNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRV-DDMLNVSGHLMTVYFF 128 (258)
Q Consensus 50 ~~~~~~~~G~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~-~d~i~~~G~~v~~~~~ 128 (258)
..|+..+.|...+ .||+++++.++..|. .++||+|||+|++|+||+|+|+||. |++||++|++|
T Consensus 352 ~~GEl~v~g~~v~--~GY~~~~~~t~~~f~--------~~g~y~TGDl~~~~~dG~l~~~GR~~d~~ik~~G~~v----- 416 (505)
T 3nyq_A 352 SVGEIQVRGPNLF--TEYLNRPDATAAAFT--------EDGFFRTGDMAVRDPDGYVRIVGRKATDLIKSGGYKI----- 416 (505)
T ss_dssp CCEEEEEESTTSC--CEETTCHHHHHHTBC--------TTSCEEEEEEEEECTTSCEEEEEESSCCCEEETTEEE-----
T ss_pred ceEEEEEecCchh--hhhCCChhHhhhhhc--------CCCCCccCCeEEECCCccEEEeCCccCceEEeCCEEE-----
Confidence 3344444444444 499999999999885 4789999999999999999999997 59999999999
Q ss_pred ccccCCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCC-CCccHHHHHHHHHHHHHhcCCCCCCcEEEE
Q psy12528 129 GSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGG-ATFNQELVKQLKQQVREKIGPFAMPDVIQH 207 (258)
Q Consensus 129 ~~~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~ 207 (258)
+|. |||+.|.+||+|.+|+|++.+++..++.+++++++.+. ...+ .++|+++++++|+.+++|..+++
T Consensus 417 ----~~~----eIE~~l~~~p~V~~a~Vv~~~~~~~g~~l~a~vv~~~~~~~~~---~~~l~~~l~~~L~~~~~P~~i~~ 485 (505)
T 3nyq_A 417 ----GAG----EIENALLEHPEVREAAVTGEPDPDLGERIVAWIVPADPAAPPA---LGTLADHVAARLAPHKRPRVVRY 485 (505)
T ss_dssp ----CHH----HHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSTTSCCC---HHHHHHHHHHHTCGGGSCSEEEE
T ss_pred ----CHH----HHHHHHHHCcCccEEEEEeeECCCCCcEEEEEEEECCCCCCCC---HHHHHHHHHhhCCCCcCccEEEE
Confidence 999 99999999999999999999998888999999998753 2333 36899999999999999999999
Q ss_pred CCCCCCCCCCcccHHHHHH
Q psy12528 208 APRLPKTRSGKIMRRVLRK 226 (258)
Q Consensus 208 ~~~lP~t~~GKi~r~~l~~ 226 (258)
+++||+|++|||+|++|++
T Consensus 486 v~~lP~t~~GKi~r~~L~~ 504 (505)
T 3nyq_A 486 LDAVPRNDMGKIMKRALNR 504 (505)
T ss_dssp CSCCCC-------------
T ss_pred ECCCCCCCCcCeeHHhhcc
Confidence 9999999999999999976
No 18
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=99.97 E-value=2.3e-30 Score=244.94 Aligned_cols=172 Identities=23% Similarity=0.255 Sum_probs=138.3
Q ss_pred CCCcCCCCCCCCCeEEeecccccccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeCCCeeEECcE
Q psy12528 42 LGDDLNLTLSMNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDDMLNVSGH 121 (258)
Q Consensus 42 ~g~~~~~~~~~~~~~~G~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~~d~i~~~G~ 121 (258)
+|.+++.+..|+..+.|+..+. ||+++++.++..|... +.++||+|||+|++|+||+|+|+||.||+||++|+
T Consensus 339 ~g~~~~~g~~GEl~v~g~~v~~--GY~~~~~~t~~~f~~~-----~~~~~~~TGDlg~~d~dG~l~~~GR~~d~i~~~G~ 411 (521)
T 3l8c_A 339 DGKELSSGEQGEIIVTGPAVSK--GYLNNPEKTAEAFFTF-----KGQPAYHTGDIGSLTEDNILLYGGRLDFQIKYAGY 411 (521)
T ss_dssp TSCBCCTTCCEEEEEESTTSCS--CBTTCHHHHHHHEEEE-----TTEEEEEEEEEEEECSSSCEEEEEEGGGBCC----
T ss_pred CcCCCCCCCceEEEecccccCh--hhcCCchHhhccCcCC-----CCceeeeCCCEEEEeCCCeEEEeCcccceEeECCE
Confidence 4677777777777777776666 9999999999988521 34689999999999999999999999999999999
Q ss_pred EEEeeecccccCCCCCHHHHHHHHHcCCCcceEEEEeeeCCC-CCcEEEEEEEeCCCCCc----cHHHHHHHHHHHHHhc
Q psy12528 122 LMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHPV-KGECLYCFITPAGGATF----NQELVKQLKQQVREKI 196 (258)
Q Consensus 122 ~v~~~~~~~~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~-~~~~~~~~v~~~~~~~~----~~~~~~~l~~~l~~~l 196 (258)
+| +|. +||+.|.+||+|.+|+|++.++.. .++.+++++++.++... ...+.++++++++++|
T Consensus 412 ~v---------~p~----eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~~a~vv~~~~~~~~~~~~~~~~~~l~~~l~~~l 478 (521)
T 3l8c_A 412 RI---------ELE----DVSQQLNQSPMVASAVAVPRYNKEHKVQNLLAYIVVKDGVKERFDRELELTKAIKASVKDHM 478 (521)
T ss_dssp -C---------BHH----HHHHHHHTSTTEEEEEEECCCSSSCC---CEEEEEECTTSGGGCSSHHHHHHHHHHHSGGGS
T ss_pred Ee---------CHH----HHHHHHHcCCCcceEEEEEeecCCCCceEEEEEEEecCccccccccchhhHHHHHHHHHhhC
Confidence 99 999 999999999999999999887544 35788899998876422 1234678999999999
Q ss_pred CCCCCCcEEEECCCCCCCCCCcccHHHHHHHHhcccc
Q psy12528 197 GPFAMPDVIQHAPRLPKTRSGKIMRRVLRKVAVNDRE 233 (258)
Q Consensus 197 ~~~~~p~~~~~~~~lP~t~~GKi~r~~l~~~~~~~~~ 233 (258)
+.+++|..++++++||+|++|||+|++|++.+.++.+
T Consensus 479 ~~~~~P~~i~~v~~lP~t~~GKidr~~L~~~~~~~~~ 515 (521)
T 3l8c_A 479 MSYMMPSKFLYRDSLPLTPNGKIDIKTLINEVNNREG 515 (521)
T ss_dssp CGGGSCSEEEECSSCCBCTTSSBCHHHHHHHTC----
T ss_pred ccccCCeEEEEecccCCCCCcCccHHHHhhhhhcCCc
Confidence 9999999999999999999999999999999877754
No 19
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=99.96 E-value=4.7e-30 Score=266.81 Aligned_cols=191 Identities=18% Similarity=0.264 Sum_probs=161.7
Q ss_pred CCcCCCCCCCCCeEEeecccccccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeCCCeeEECcEE
Q psy12528 43 GDDLNLTLSMNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDDMLNVSGHL 122 (258)
Q Consensus 43 g~~~~~~~~~~~~~~G~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~~d~i~~~G~~ 122 (258)
+..++.+..|+..+.|..++. ||+|+++.|+..|..++ + ..+++||+|||+|++++||.|+|+||.|++||++|++
T Consensus 795 ~~~~p~G~~GEl~i~G~~v~~--GY~~~p~~T~~~f~~~p-~-~~g~~~yrTGDl~~~~~dG~l~~~GR~d~qvki~G~r 870 (1304)
T 2vsq_A 795 SQLQPFGAVGELCISGMGVSK--GYVNRADLTKEKFIENP-F-KPGETLYRTGDLARWLPDGTIEYAGRIDDQVKIRGHR 870 (1304)
T ss_dssp SCBCCTTCCEEEEEEETTCCC--CBTTCHHHHHHHEEECT-T-STTCEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEE
T ss_pred cCCCCCCCceEEEEeccccCc--cccCCcccchhhhccCC-C-CCCCeeEecCCeEEEcCCCeEEEEcCCCCEEEECCEe
Confidence 456666777777777776666 99999999999997443 2 1346799999999999999999999999999999999
Q ss_pred EEeeecccccCCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCCCccHHHHHHHHHHHHHhcCCCCCC
Q psy12528 123 MTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMP 202 (258)
Q Consensus 123 v~~~~~~~~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p 202 (258)
| +|. |||++|.+||+|.+|+|++.++...+..++++++.... .+ .++++++++++|+.|++|
T Consensus 871 i---------e~~----eIE~~l~~~p~V~~a~V~~~~~~~~~~~l~a~vv~~~~--~~---~~~l~~~l~~~Lp~ymvP 932 (1304)
T 2vsq_A 871 I---------ELE----EIEKQLQEYPGVKDAVVVADRHESGDASINAYLVNRTQ--LS---AEDVKAHLKKQLPAYMVP 932 (1304)
T ss_dssp E---------EHH----HHHHHHHHSSSCCEEEEEEECCSSSCCEEEEEEECSSS--SC---HHHHHHHHHHHSCGGGSC
T ss_pred e---------CHH----HHHHHHHhCCCCceEEEEEEecCCCCEEEEEEEeCCCC--CC---HHHHHHHHHHhChHhhhc
Confidence 9 999 99999999999999999999888778899999987652 23 268999999999999999
Q ss_pred cEEEECCCCCCCCCCcccHHHHHHHHhcccc-cCCCCCCCchHHHHHHHHHccC
Q psy12528 203 DVIQHAPRLPKTRSGKIMRRVLRKVAVNDRE-VGDKSTLADEDVVDELFQNRPE 255 (258)
Q Consensus 203 ~~~~~~~~lP~t~~GKi~r~~l~~~~~~~~~-~~~~~~~~~~~~l~~l~~~~~~ 255 (258)
..++.++++|+|+||||+|++|++....... ....+.+..|+.+.++|++++.
T Consensus 933 ~~~~~l~~lP~t~~GKidR~~L~~~~~~~~~~~~~~p~~~~e~~l~~~~~~vL~ 986 (1304)
T 2vsq_A 933 QTFTFLDELPLTTNGKVNKRLLPKPDQDQLAEEWIGPRNEMEETIAQIWSEVLG 986 (1304)
T ss_dssp SEEEEESCCCCCSSCSSCCSCCCCCCGGGGCCCCCCCSSHHHHHHHHHHHHHHT
T ss_pred cEEEEecccCCCCCcccCHhhcCCcchhhhcccccCCCChHHHHHHHHHHHHcC
Confidence 9999999999999999999999776543321 3456778889999999999875
No 20
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=99.96 E-value=4.4e-31 Score=251.96 Aligned_cols=171 Identities=19% Similarity=0.307 Sum_probs=54.1
Q ss_pred EEEeCCCCCcCCCCCCCCCeEEeecccccccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeCCCe
Q psy12528 36 SILEPRLGDDLNLTLSMNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDDM 115 (258)
Q Consensus 36 ~i~~~~~g~~~~~~~~~~~~~~G~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~~d~ 115 (258)
.|.+++++..++.+..|+..+.|+..+. ||+++++.++..|. .+|||+|||+|++|+||+|+++||.||+
T Consensus 372 ~i~d~~~~~~~~~g~~GEl~v~g~~v~~--GY~~~~~~t~~~~~--------~~g~~~TGDl~~~~~dG~l~~~GR~dd~ 441 (550)
T 3rix_A 372 KVVDLDTGKTLGVNQRGELCVRGPMIMS--GYVNNPEATNALID--------KDGWLHSGDIAYWDEDEHFFIVDRLKSL 441 (550)
T ss_dssp EEECTTTCCBCCTTCCEEEEEESTTSCS--EETTCHHHHHHHBC--------TTSCEEEEEEEEECTTCCEEEC------
T ss_pred EEEeCCCCcCCCCCCCeEEEEeCCCcch--hhcCChhhhhhhcC--------CCCCeecCcEEEEeCCceEEEEecchhe
Confidence 4556666777777777777777777766 99999999999884 4789999999999999999999999999
Q ss_pred eEECcEEEEeeecccccCCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCCCccHHHHHHHHHHHHHh
Q psy12528 116 LNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREK 195 (258)
Q Consensus 116 i~~~G~~v~~~~~~~~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~ 195 (258)
||++|++| +|. +||++|.+||+|.+|+|++.+++..++.++++|++.++...+. ++++++++++
T Consensus 442 ik~~G~~v---------~p~----eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~~~~~~---~~l~~~~~~~ 505 (550)
T 3rix_A 442 IKYKGYQV---------APA----ELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMTE---KEIVDYVASQ 505 (550)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eEECCEEE---------CHH----HHHHHHHhCCCcceEEEEEeecCCCCceEEEEEEecCCCCCCH---HHHHHHHHHh
Confidence 99999999 999 9999999999999999999999888889999998876654443 6788999999
Q ss_pred cCCCCCC-cEEEECCCCCCCCCCcccHHHHHHHHhccc
Q psy12528 196 IGPFAMP-DVIQHAPRLPKTRSGKIMRRVLRKVAVNDR 232 (258)
Q Consensus 196 l~~~~~p-~~~~~~~~lP~t~~GKi~r~~l~~~~~~~~ 232 (258)
++++++| ..+++++++|+|++|||+|++|++++.+..
T Consensus 506 l~~~~~~~~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~ 543 (550)
T 3rix_A 506 VTTAKKLRGGVVFVDEVPKGLTGKLDARKIREILIKAK 543 (550)
T ss_dssp --------------------------------------
T ss_pred cccccccCCceEEEeecCCCCCcceeHHHHHHHHHhhc
Confidence 9888655 469999999999999999999999987654
No 21
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=99.96 E-value=4e-31 Score=249.72 Aligned_cols=169 Identities=22% Similarity=0.353 Sum_probs=52.9
Q ss_pred EEEeCCCCCcCCCCCCCCCeEEeecccccccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeC--C
Q psy12528 36 SILEPRLGDDLNLTLSMNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRV--D 113 (258)
Q Consensus 36 ~i~~~~~g~~~~~~~~~~~~~~G~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~--~ 113 (258)
.|.++ ++..++.+..|+..+.|...+. ||+++++.++..|. +|||+|||+|++|+||+|+++||. |
T Consensus 333 ~i~d~-~~~~~~~g~~GEl~v~g~~~~~--gY~~~~~~t~~~f~---------~g~~~TGDl~~~~~dG~l~~~GR~d~~ 400 (509)
T 3ivr_A 333 AVVDA-EDRPLPPGEVGEIVLRGPTVFK--GYWNNAAATQHAFR---------NGWHHTGDMGRFDADGYLFYAGRAPEK 400 (509)
T ss_dssp EEECT-TSCBCCTTCCEEEEEESTTSCC--EETTCHHHHHHHTG---------GGSEEEEEEEEECTTSCEEEEEEC---
T ss_pred EEECC-CCCCCCCCCceEEEEecCCccc--cccCCHHHhHHHhh---------cCCcccccEEEECCCceEEEeCCCCcc
Confidence 34443 3666777777776666666665 99999999999985 689999999999999999999999 9
Q ss_pred CeeEECcEEEEeeecccccCCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCCCccHHHHHHHHHHHH
Q psy12528 114 DMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVR 193 (258)
Q Consensus 114 d~i~~~G~~v~~~~~~~~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~ 193 (258)
|+||++|++| +|. +||+.|.+||+|.+|+|++.+++..++.+++++++.++...+. ++++++++
T Consensus 401 d~ik~~G~~v---------~p~----eiE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~---~~l~~~l~ 464 (509)
T 3ivr_A 401 ELIKTGGENV---------YPA----EVEGALKQHPAIADAVVIGVPDPQWSEAIKAVCVCKPGESIAA---DALAEFVA 464 (509)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eeEEECCEEE---------CHH----HHHHHHHhCCCceeEEEEeccccccCcEEEEEEEeCCCCCCCH---HHHHHHHH
Confidence 9999999999 999 9999999999999999999998888888999998876654443 68999999
Q ss_pred HhcCCCCCCcEEEECCCCCCCCCCcccHHHHHHHHhccc
Q psy12528 194 EKIGPFAMPDVIQHAPRLPKTRSGKIMRRVLRKVAVNDR 232 (258)
Q Consensus 194 ~~l~~~~~p~~~~~~~~lP~t~~GKi~r~~l~~~~~~~~ 232 (258)
++|+.+++|..++++++||+|++|||+|++|++++.+..
T Consensus 465 ~~L~~~~~P~~i~~v~~lP~t~~GKidr~~Lr~~~~~~~ 503 (509)
T 3ivr_A 465 SLIARYKKPKHVVFVEALPKDAKGAIDRAAVKTAHGQEG 503 (509)
T ss_dssp ---------------------------------------
T ss_pred hhCcccCCCcEEEEecCCCCCCCCCccHHHHHHHHhhcc
Confidence 999999999999999999999999999999999987764
No 22
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=99.96 E-value=6.8e-31 Score=251.81 Aligned_cols=174 Identities=22% Similarity=0.268 Sum_probs=57.6
Q ss_pred EEEeCCCCCcCCCCCCCCCeEEeecccccccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeCCCe
Q psy12528 36 SILEPRLGDDLNLTLSMNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDDM 115 (258)
Q Consensus 36 ~i~~~~~g~~~~~~~~~~~~~~G~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~~d~ 115 (258)
.|.+ +++..++.+..|+..+.|..++. ||+++++.++..|...+-.....+|||+|||+|++|+||+|+|+||.||+
T Consensus 395 ~i~d-~~~~~~~~G~~GEl~v~g~~v~~--GY~~~~~~t~~~f~~~~~~~~~~~~w~~TGDlg~~d~dG~l~~~GR~~d~ 471 (570)
T 4gr5_A 395 YVLD-DDLKPAANGALGELYVAGAGLAH--GYVSRPALTAERFVADPFAGPGGERMYRTGDLARRRADGVLEYVGRADDQ 471 (570)
T ss_dssp EEEC-TTSCBCCTTCEEEEEEEETTCCC--EETTCHHHHHHHEEECTTCCSSCCEEEEEEEEEEECTTSCEEEEEC----
T ss_pred EEEC-CCCCCCCCCCcEEEEEeecccch--hcCCCchhhhcccccCCCCCCCCCEEEeCCCeEEECCCCeEEEEcccCCE
Confidence 4544 34677777777777777777777 99999999999996443222234689999999999999999999999999
Q ss_pred eEECcEEEEeeecccccCCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCC-CccHHHHHHHHHHHHH
Q psy12528 116 LNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGA-TFNQELVKQLKQQVRE 194 (258)
Q Consensus 116 i~~~G~~v~~~~~~~~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~l~~~l~~ 194 (258)
||++|++| +|. |||+.|.+||+|.+|+|++.+++..++.++++++..... ..+ .++|+++|++
T Consensus 472 Ik~~G~~v---------~p~----eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~~~~~~---~~~l~~~l~~ 535 (570)
T 4gr5_A 472 VKIRGFRV---------EPG----EVEARLVGHPAVRQAAVLAQDSRLGDKQLVAYVVAERADAPPD---AAELRRHVAE 535 (570)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEECcEEe---------CHH----HHHHHHhcCCCcceEEEEEeeCCCCCeEEEEEEEecCCCCCcC---HHHHHHHHHh
Confidence 99999999 999 999999999999999999998887788888888875432 222 3689999999
Q ss_pred hcCCCCCCcEEEECCCCCCCCCCcccHHHHHHHH
Q psy12528 195 KIGPFAMPDVIQHAPRLPKTRSGKIMRRVLRKVA 228 (258)
Q Consensus 195 ~l~~~~~p~~~~~~~~lP~t~~GKi~r~~l~~~~ 228 (258)
+|+.+++|..+++++++|+|++|||+|++|++..
T Consensus 536 ~l~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~g 569 (570)
T 4gr5_A 536 ALPAYMVPVECVPVDELPRTPNGKLDRRALTGSG 569 (570)
T ss_dssp ----------------------------------
T ss_pred hCccccCCcEEEEcccCCCCCCcCcchHhhhccC
Confidence 9999999999999999999999999999998753
No 23
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=99.96 E-value=2.2e-29 Score=238.83 Aligned_cols=165 Identities=27% Similarity=0.275 Sum_probs=137.5
Q ss_pred EEEeCCCCCcCCCCCCCCCeEEeecccccccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeCCCe
Q psy12528 36 SILEPRLGDDLNLTLSMNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDDM 115 (258)
Q Consensus 36 ~i~~~~~g~~~~~~~~~~~~~~G~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~~d~ 115 (258)
.|.+ +++..++.+..|+..+.|...+. ||+++++.++..|. ++||+|||++++|+||+|+++||.||+
T Consensus 364 ~i~d-~~g~~~~~g~~GEl~v~g~~~~~--gY~~~~~~t~~~f~---------~~~~~TGDl~~~~~~G~l~~~GR~dd~ 431 (529)
T 2v7b_A 364 ELRD-EAGHAVPDGEVGDLYIKGPSAAV--MYWNNREKSRATFL---------GEWIRSGDKYCRLPNGCYVYAGRSDDM 431 (529)
T ss_dssp EEEC-TTSCBCCTTSCEEEEEECTTCCC--CBTTCHHHHHHHEE---------TTEEEEEEEEEECTTSCEEEEEEGGGC
T ss_pred EEEC-CCCCCCCCCCccEEEEecCCccc--ccCCChHHHHHhhh---------cCCcccCceEEECCCccEEEeCccCCe
Confidence 3444 34566666666766666666555 99999999999885 689999999999999999999999999
Q ss_pred eEECcEEEEeeecccccCCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCCCccHHHHHHHHHHHHHh
Q psy12528 116 LNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREK 195 (258)
Q Consensus 116 i~~~G~~v~~~~~~~~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~ 195 (258)
||++|++| +|. +||+.|.+||+|.+++|++. +...++.+++++++..+....+.+.++++++++++
T Consensus 432 ik~~G~~v---------~p~----eIE~~l~~~p~V~~~~vv~~-~~~~~~~~~a~vv~~~~~~~~~~~~~~l~~~l~~~ 497 (529)
T 2v7b_A 432 LKVSGQYV---------SPV----EVEMVLVQHDAVLEAAVVGV-DHGGLVKTRAFVVLKREFAPSEILAEELKAFVKDR 497 (529)
T ss_dssp BC----CB---------CHH----HHHHHHTTSTTEEEEEEEEE-EETTEEEEEEEEEECTTCCCCHHHHHHHHHHHHTT
T ss_pred EEECCEEE---------CHH----HHHHHHHhCCCcceEEEEEe-cCCCceEEEEEEEecCCCCcchhHHHHHHHHHHhh
Confidence 99999999 999 99999999999999999998 55567788899998765433333456899999999
Q ss_pred cCCCCCCcEEEECCCCCCCCCCcccHHHHHH
Q psy12528 196 IGPFAMPDVIQHAPRLPKTRSGKIMRRVLRK 226 (258)
Q Consensus 196 l~~~~~p~~~~~~~~lP~t~~GKi~r~~l~~ 226 (258)
|+.+++|..+++++++|+|++||++|++|++
T Consensus 498 L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~ 528 (529)
T 2v7b_A 498 LAPHKYPRDIVFVDDLPKTATGKIQRFKLRE 528 (529)
T ss_dssp SCTTTSCSEEEEESCCCBCTTSCBCHHHHHC
T ss_pred cchhhCCeEEEEeccCCCCCccchhHHhHhh
Confidence 9999999999999999999999999999975
No 24
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=99.96 E-value=5.3e-30 Score=244.19 Aligned_cols=154 Identities=26% Similarity=0.408 Sum_probs=99.5
Q ss_pred CCCCeEEeecccccccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeCCCeeEECcEEEEeeeccc
Q psy12528 51 SMNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGS 130 (258)
Q Consensus 51 ~~~~~~~G~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~~d~i~~~G~~v~~~~~~~ 130 (258)
.|+..+.|+..+. ||+++++.++..|. .+|||+|||+|++|+||+|+|+||.||+||++|++|
T Consensus 383 ~GEl~v~g~~v~~--GY~~~p~~t~~~f~--------~~g~~~TGDlg~~d~dG~l~~~GR~~d~ik~~G~~v------- 445 (541)
T 1v25_A 383 LGEVQLKGPWITG--GYYGNEEATRSALT--------PDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWI------- 445 (541)
T ss_dssp CEEEEEESTTSBS--SCBTCHHHHHTTBC--------TTSCEEEEEEEEECTTCCEEEEEESSCEEEETTEEE-------
T ss_pred ceEEEEeCcchhc--cccCChhhhhhhcc--------CCCCeEcCCEEEEcCCceEEEeecccceeeeCCEEE-------
Confidence 4555555555554 99999999998885 478999999999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCCCccHHHHHHHHHHHHH-hcCCCCCCcEEEECC
Q psy12528 131 YCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVRE-KIGPFAMPDVIQHAP 209 (258)
Q Consensus 131 ~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~-~l~~~~~p~~~~~~~ 209 (258)
+|. +||+.|.+||+|.+|+|++.+++..++.++++|++. +...+ .+++++++++ +|+.+++|..+++++
T Consensus 446 --~p~----eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~-~~~~~---~~~l~~~~~~~~L~~~~~P~~i~~v~ 515 (541)
T 1v25_A 446 --SSV----DLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPR-GEKPT---PEELNEHLLKAGFAKWQLPDAYVFAE 515 (541)
T ss_dssp --EHH----HHHCC----------CEEEEECSSSSEEEEECC-----------------------CCCTTTSCSBC----
T ss_pred --CHH----HHHHHHHhCCCceEEEEEEecCCCcCceEEEEEEEC-CCCCC---HHHHHHHHHhccCccccCCcEEEEeC
Confidence 999 999999999999999999999988888999998876 22222 2578888888 899999999999999
Q ss_pred CCCCCCCCcccHHHHHHHHhcc
Q psy12528 210 RLPKTRSGKIMRRVLRKVAVND 231 (258)
Q Consensus 210 ~lP~t~~GKi~r~~l~~~~~~~ 231 (258)
++|+|++||++|++|++.+.+.
T Consensus 516 ~lP~t~~GKi~r~~L~~~~~~~ 537 (541)
T 1v25_A 516 EIPRTSAGKFLKRALREQYKNY 537 (541)
T ss_dssp ----------CCTTHHHHSTTS
T ss_pred CCCCCCccCeeHHHHHHHHHHh
Confidence 9999999999999999987654
No 25
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=99.96 E-value=3.2e-30 Score=245.81 Aligned_cols=169 Identities=24% Similarity=0.335 Sum_probs=57.1
Q ss_pred EEEEeCCCCCcCCCCCCCCCeEEeecccccccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeCCC
Q psy12528 35 ISILEPRLGDDLNLTLSMNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDD 114 (258)
Q Consensus 35 ~~i~~~~~g~~~~~~~~~~~~~~G~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~~d 114 (258)
+.|.+ +++..++.+..|+..+.|+..+. ||+++++.++..|. .+|||+|||+|++|+||+|+|+||.||
T Consensus 372 ~~i~d-~~~~~~~~g~~GEl~v~g~~v~~--GY~~~~~~t~~~f~--------~~g~~~TGDlg~~~~dG~l~~~GR~dd 440 (544)
T 3o83_A 372 IKIVD-EQYREVPEGEIGMLATRGPYTFC--GYYQSPEHNSQVFD--------EDNYYYSGDLVQRTPDGNLRVVGRIKD 440 (544)
T ss_dssp EEEEC-TTSCBCCTTCCEEEEEECTTSCS--CCTTCHHHHHHHBC--------TTCCEEEEEEEEECTTSCEEEEEEEC-
T ss_pred EEEEC-CCCCCCCCCCeeEEEEecCCcch--hhcCChhhhhhhCC--------CCCCeEcCCEEEEcCCCCEEEEeecCC
Confidence 34544 45677777777777777777666 99999999999984 479999999999999999999999999
Q ss_pred eeEECcEEEEeeecccccCCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCCCccHHHHHHHHHHHHH
Q psy12528 115 MLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVRE 194 (258)
Q Consensus 115 ~i~~~G~~v~~~~~~~~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~ 194 (258)
+||++|++| +|. |||+.|.+||+|.+|+|++.+++..++.++++++..+.. .+ .+.+++++++
T Consensus 441 ~ik~~G~~v---------~p~----eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~~-~~---~~~l~~~~~~ 503 (544)
T 3o83_A 441 QINRGGEKI---------ASE----EIEKLILLHPEVMHAALVAIVDEQFGEKSCAFIVSRNPE-LK---AVVLRRHLME 503 (544)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEeCCEEE---------CHH----HHHHHHHhCCCccEEEEEeccCCCCCceEEEEEEeCCCC-CC---HHHHHHHHHh
Confidence 999999999 999 999999999999999999999988888889998876532 22 2578888888
Q ss_pred -hcCCCCCCcEEEECCCCCCCCCCcccHHHHHHHHhcc
Q psy12528 195 -KIGPFAMPDVIQHAPRLPKTRSGKIMRRVLRKVAVND 231 (258)
Q Consensus 195 -~l~~~~~p~~~~~~~~lP~t~~GKi~r~~l~~~~~~~ 231 (258)
+++.+++|..+++++++|+|++||++|++|++++.+.
T Consensus 504 ~~l~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~ 541 (544)
T 3o83_A 504 LGIAQYKLPDQIKLIESLPLTAVGKVDKKQLRSILNTS 541 (544)
T ss_dssp --------------------------------------
T ss_pred CCCCcccCCcEEEEeccCCCCCCCCCcHHHHHHHHhhc
Confidence 6999999999999999999999999999999988654
No 26
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=99.96 E-value=5.3e-30 Score=259.63 Aligned_cols=171 Identities=25% Similarity=0.404 Sum_probs=61.0
Q ss_pred EEEEeCCCCCcCCCCCCCCCeEEeecccccccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeCCC
Q psy12528 35 ISILEPRLGDDLNLTLSMNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDD 114 (258)
Q Consensus 35 ~~i~~~~~g~~~~~~~~~~~~~~G~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~~d 114 (258)
+.|.+++++..++.+..|+..+.|+.++. ||+++++.++..|. .+|||+|||++++|+||+|+|+||.||
T Consensus 413 ~~i~d~~~~~~~~~g~~GEl~i~g~~v~~--GY~~~p~~t~~~f~--------~~g~~~TGDl~~~~~dG~l~~~GR~dd 482 (979)
T 3tsy_A 413 MKIVDPDTGDSLSRNQPGEICIRGHQIMK--GYLNNPAATAETID--------KDGWLHTGDIGLIDDDDELFIVDRLKE 482 (979)
T ss_dssp EEEECTTSCCBCCTTCCEEEEEESTTSCS--EETTCHHHHHHHBC--------TTSCEEEEEEEEECTTSCEEEEEESCC
T ss_pred EEEEeCCCCCCCCCCCccEEEEECCCccc--cccCChhhhhhhcc--------CCCcEEcCCEEEEcCCceEEEecCCCC
Confidence 46777777888888888887777777776 99999999999884 478999999999999999999999999
Q ss_pred eeEECcEEEEeeecccccCCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCCCccHHHHHHHHHHHHH
Q psy12528 115 MLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVRE 194 (258)
Q Consensus 115 ~i~~~G~~v~~~~~~~~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~ 194 (258)
+||++|++| +|. |||+.|.+||+|.+++|++.+++..++.++++|+..++...+. +++++++++
T Consensus 483 ~ik~~G~~v---------~~~----eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~vv~~~~~~~~~---~~l~~~l~~ 546 (979)
T 3tsy_A 483 LIKYKGFQV---------APA----ELEALLIGHPDITDVAVVAMKEEAAGEVPVAFVVKSKDSELSE---DDVKQFVSK 546 (979)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEECCEEE---------CHH----HHHHHHHhCCCcceEEEEEecccCCCcEEEEEEEECCCCCCCH---HHHHHHHHH
Confidence 999999999 999 9999999999999999999998888888999998776544443 689999999
Q ss_pred hcCCCCCCcEEEECCCCCCCCCCcccHHHHHHHHhcc
Q psy12528 195 KIGPFAMPDVIQHAPRLPKTRSGKIMRRVLRKVAVND 231 (258)
Q Consensus 195 ~l~~~~~p~~~~~~~~lP~t~~GKi~r~~l~~~~~~~ 231 (258)
+|+.+++|..++++++||+|++|||+|++|++++.+.
T Consensus 547 ~l~~~~~p~~i~~v~~lP~t~~GKi~r~~L~~~~~~~ 583 (979)
T 3tsy_A 547 QVVFYKRINKVFFTESIPKAPSGKILRKDLRAKLANG 583 (979)
T ss_dssp -------------------------------------
T ss_pred hcccccCCeEEEEeCCcCcCCCCCeeHHHHHHHHHhh
Confidence 9999999999999999999999999999999988664
No 27
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=99.96 E-value=4.7e-29 Score=234.93 Aligned_cols=150 Identities=18% Similarity=0.307 Sum_probs=113.6
Q ss_pred CCCeEEeecccccccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeCCCeeEECcEEEEeeecccc
Q psy12528 52 MNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSY 131 (258)
Q Consensus 52 ~~~~~~G~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~~d~i~~~G~~v~~~~~~~~ 131 (258)
|+..+.|...+ .||+++++.++. |. +|||+|||+|++|+||+|+++||.||+||++|++|
T Consensus 349 GEl~v~g~~~~--~gY~~~~~~t~~-~~---------~g~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v-------- 408 (501)
T 3ipl_A 349 GELMIKGANVM--NGYLYPTDLTGT-FE---------NGYFNTGDIAEIDHEGYVMIYDRRKDLIISGGENI-------- 408 (501)
T ss_dssp EEEEEESTTSC--SCCSBSTTCCCS-EE---------TTEEEEEEEEEECTTSCEEEEEECCCCEECSSCEE--------
T ss_pred cEEEEeccchh--hhhCcChhhcch-hc---------CCceecCCEEEEcCCCeEEEEccccceEEECCEEE--------
Confidence 33344444444 499999998866 43 68999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCCCccHHHHHHHHHHHHHhcCCCCCCcEEEECCCC
Q psy12528 132 CSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRL 211 (258)
Q Consensus 132 ~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~l 211 (258)
+|. +||+.|.+||+|.+|+|++.+++..++.++++++.... .+. ++++++++++|+.+++|..+++++++
T Consensus 409 -~p~----eiE~~l~~~p~V~~~~vv~~~~~~~g~~~~a~v~~~~~--~~~---~~l~~~l~~~L~~~~~P~~i~~v~~l 478 (501)
T 3ipl_A 409 -YPY----QIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVSESD--ISK---AQLIAYLSKHLAKYKVPKHFEKVDTL 478 (501)
T ss_dssp -CHH----HHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSC--CCH---HHHHHHHHHHSCGGGSCSEEEECSSC
T ss_pred -CHH----HHHHHHHhCCCccEEEEEEEecccCCceEEEEEEeCCC--CCH---HHHHHHHHhhCccccCCCEEEEeccc
Confidence 999 99999999999999999999998888888888887543 232 68999999999999999999999999
Q ss_pred CCCCCCcccHHHHHHHHhcc
Q psy12528 212 PKTRSGKIMRRVLRKVAVND 231 (258)
Q Consensus 212 P~t~~GKi~r~~l~~~~~~~ 231 (258)
|+|++|||+|++|++.....
T Consensus 479 P~t~~GKi~R~~l~~~~~~~ 498 (501)
T 3ipl_A 479 PYTSTGKLQRNKLYREGHHH 498 (501)
T ss_dssp C-------------------
T ss_pred CCCCCCCEeHHHHhhccccc
Confidence 99999999999999876554
No 28
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=99.95 E-value=8e-30 Score=243.50 Aligned_cols=175 Identities=17% Similarity=0.244 Sum_probs=54.4
Q ss_pred EEEeCCCCCcCCCCCCCCCeEEeecccccccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeCCCe
Q psy12528 36 SILEPRLGDDLNLTLSMNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDDM 115 (258)
Q Consensus 36 ~i~~~~~g~~~~~~~~~~~~~~G~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~~d~ 115 (258)
.|.+++.+..++.+..|+..+.|+..+. ||+++++.++..+. ++++||+|||+|++|+||+|+|+||.||+
T Consensus 359 ~i~d~~~~~~~~~g~~GEl~v~g~~v~~--GY~~~p~~t~~~~~-------~g~~w~~TGDlg~~d~dG~l~~~GR~dd~ 429 (562)
T 3ite_A 359 HVLAPGSNEHVKKGMAGELVIEGSLVAN--GYLNRPDAKGFCDI-------NGRKMYRTGDIVRMDADSSILFLGRKDEQ 429 (562)
T ss_dssp EEECTTSSCBCCTTSCEEEEEESTTSCC--EESSCTTCCSEEEE-------TTEEEEEEEEEEEECTTSCEEEEEEC---
T ss_pred EEEeCCCCCCCCCCCceEEEEeccccch--hhCCCccccccccC-------CCCEEEecCCEEEEcCCCeEEEEccccCE
Confidence 4555666777787777777777777766 99999998865543 23459999999999999999999999999
Q ss_pred eEECcEEEEeeecccccCCCCCHHHHHHHHHcC-CCcceEEEEeeeCCCCCcEEEEEEEeCCCCCcc----------HHH
Q psy12528 116 LNVSGHLMTVYFFGSYCSTAKVFTEVEACLASH-PDVSEAAVVSRPHPVKGECLYCFITPAGGATFN----------QEL 184 (258)
Q Consensus 116 i~~~G~~v~~~~~~~~~~~~~~~~~iE~~l~~~-~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~~~~----------~~~ 184 (258)
||++|++| +|. |||++|.+| +.+.+++++..+++..++..++.++...+.... +.+
T Consensus 430 Ik~~G~~v---------~p~----eIE~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 496 (562)
T 3ite_A 430 VKVRGQRL---------ELG----EVSEVIRSLSPTDIDVVTLLLNHPGTSKQFLVSFVASSGAAVRGELRWINENYKEI 496 (562)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EeECcEEE---------CHH----HHHHHHHhcCCCceeEEEEEecCCCCcceEEEEEEecccccccccccccccchhhH
Confidence 99999999 999 999999998 778888888888877666555544443322211 122
Q ss_pred HHHHHHHHHHhcCCCCCCcEEEECCCCCCC-CCCcccHHHHHHHHhccc
Q psy12528 185 VKQLKQQVREKIGPFAMPDVIQHAPRLPKT-RSGKIMRRVLRKVAVNDR 232 (258)
Q Consensus 185 ~~~l~~~l~~~l~~~~~p~~~~~~~~lP~t-~~GKi~r~~l~~~~~~~~ 232 (258)
.++|+++|+++|+.|++|+.++++++||+| .+||++|++|++++.+..
T Consensus 497 ~~~l~~~~~~~L~~y~~P~~i~~v~~lP~t~~~GKi~r~~L~~~~~~~~ 545 (562)
T 3ite_A 497 NNSLRQACEQTLPAYMVPDFIIPISFIPLRDTSAKTDAKALEHMFHTLS 545 (562)
T ss_dssp -------------------------------------------------
T ss_pred HHHHHHHHHhhCCcccCCcEEEEeccCCCCCCCCcchHHHHHHHHhccC
Confidence 358999999999999999999999999998 999999999999987653
No 29
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=99.95 E-value=5e-28 Score=231.81 Aligned_cols=180 Identities=16% Similarity=0.119 Sum_probs=138.4
Q ss_pred EEEEeCCCCCcCCCCCCCCCeEEeecccccccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeCCC
Q psy12528 35 ISILEPRLGDDLNLTLSMNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDD 114 (258)
Q Consensus 35 ~~i~~~~~g~~~~~~~~~~~~~~G~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~~d 114 (258)
+.|.+++.+..++.+..|+..+.|+.++. ||+++++.++..|.........+.+||+|||+|++| +|+|+|+||.||
T Consensus 383 v~i~d~~~~~~~~~g~~GEl~v~g~~v~~--GY~~~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~d-dG~l~~~GR~dd 459 (590)
T 3kxw_A 383 VKIIDPDTLIPCDFDQVGEIWVQSNSVAK--GYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLH-ENELYVTGRIKD 459 (590)
T ss_dssp EEEECTTTCCBCCTTBCEEEEEESTTSCC--CBTTCHHHHHHHHCBCCTTC---CCBEEEEEEEEEE-TTEEEEEEESSC
T ss_pred eEEEcCCCCcCCCCCCEEEEEEeCCcccc--cccCChhHHHHHHhccccCCCCCCcEEecCcEEEEE-CCEEEEEcCccc
Confidence 44555566777777777777777777776 999999999999974321111123499999999998 999999999999
Q ss_pred eeEECcEEEEeeecccccCCCCCHHHHHHHH-HcCCCcc--eEEEEeeeCCCCCcEEEEEEEeCCCCCccHHHHHHHHHH
Q psy12528 115 MLNVSGHLMTVYFFGSYCSTAKVFTEVEACL-ASHPDVS--EAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQ 191 (258)
Q Consensus 115 ~i~~~G~~v~~~~~~~~~~~~~~~~~iE~~l-~~~~~v~--~a~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~ 191 (258)
+||++|++| +|. +||+.| .++|.|. +|+|++++++. ++.+++++++..+.. .....+++.+.
T Consensus 460 ~Ik~~G~~v---------~p~----eIE~~l~~~~~~v~~~~~~v~~~~~~~-~~~~~~~v~~~~~~~-~~~~~~~l~~~ 524 (590)
T 3kxw_A 460 LIIIYGKNH---------YPQ----DIEFSLMHSPLHHVLGKCAAFVIQEEH-EYKLTVMCEVKNRFM-DDVAQDNLFNE 524 (590)
T ss_dssp HHHHHHHTT---------HHH----HHHHHHHHSGGGGGEEEEEEEEEEETT-EEEEEEEEEESCTTC-CHHHHHHHHHH
T ss_pred eEEECCEec---------CHH----HHHHHHHhcCccccCccEEEEEecCCC-CceEEEEEEeccccc-cchhHHHHHHH
Confidence 999999999 999 999999 8899998 79999988765 677888888876531 11123456666
Q ss_pred HHHhcCC-CCCCc---EEEECCCCCCCCCCcccHHHHHHHHhccc
Q psy12528 192 VREKIGP-FAMPD---VIQHAPRLPKTRSGKIMRRVLRKVAVNDR 232 (258)
Q Consensus 192 l~~~l~~-~~~p~---~~~~~~~lP~t~~GKi~r~~l~~~~~~~~ 232 (258)
++++++. +++|. .++.+++||+|++|||+|++|++++.+..
T Consensus 525 l~~~l~~~~~~p~~~i~~v~~~~lP~t~sGKi~R~~L~~~~~~~~ 569 (590)
T 3kxw_A 525 IFELVYENHQLEVHTIVLIPLKAMPHTTSGKIRRNFCRKHLLDKT 569 (590)
T ss_dssp HHHHHHHHHSCCCCEEEEEETTCSCCCSCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHcCCceeEEEEECCCccCcCCCcHHHHHHHHHHHHcCC
Confidence 6666553 45553 45555899999999999999999998765
No 30
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=99.94 E-value=1e-27 Score=217.94 Aligned_cols=176 Identities=16% Similarity=0.212 Sum_probs=132.6
Q ss_pred ceecCCCCCceEEEEeCCCCCcCCCCCCCCCeEEeecccccccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccC
Q psy12528 24 FTVLGQVTVPQISILEPRLGDDLNLTLSMNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDED 103 (258)
Q Consensus 24 ~~~yG~te~~~~~i~~~~~g~~~~~~~~~~~~~~G~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~ 103 (258)
++.||+||++......+..+ ...++.+..++.... +|.++.+.... +. ...+|||+|||++++|++
T Consensus 176 ~~~YG~TEt~~~~~~~~~~~-----~~~g~~~~~~pgv~~--~~~~~Gel~~~---g~----~~~~g~~~TGDlg~~d~~ 241 (358)
T 4gs5_A 176 YQSYGMTETVSHVALKALNG-----PEASELYVFLPGIQY--GVDERGCLHIS---GA----VTNGQTVQTNDLVEIHGN 241 (358)
T ss_dssp EEEEECGGGSSEEEEEECSS-----TTCCSCEEECTTCEE--EECTTSEEEEE---SG----GGTTCCEEEEEEEEECSS
T ss_pred Eeccccccccceeecccccc-----cccceeeccCCCeEE--EecCcCceEEe---cc----cccCcceecCCccccccC
Confidence 58899999776433333221 123344444444333 66555443211 11 135799999999999988
Q ss_pred CcEEEEeeCCCeeEECcEEEEeeecccccCCCCCHHHHHHHHH---cCCCcceEEEE-eeeCCCCCcEEEEEEEeCCCCC
Q psy12528 104 GYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLA---SHPDVSEAAVV-SRPHPVKGECLYCFITPAGGAT 179 (258)
Q Consensus 104 G~l~~~GR~~d~i~~~G~~v~~~~~~~~~~~~~~~~~iE~~l~---~~~~v~~a~vv-~~~~~~~~~~~~~~v~~~~~~~ 179 (258)
| ++++||.||+||++|++| +|. +||+.|. .||+|.+|+|+ ..+++..++.++++++....
T Consensus 242 g-~~~~GR~dd~Ik~~G~~v---------~p~----eIE~~l~~~~~~p~V~~a~vv~~~~d~~~ge~~~a~v~~~~~-- 305 (358)
T 4gs5_A 242 A-FQWIGRADNVINSGGVKI---------VLD----QIDQRIAAVFHHLNIGNAFFCWWEPDAKLGQKLVLVIENAMP-- 305 (358)
T ss_dssp E-EEEEEEGGGEEEETTEEE---------EHH----HHHHHHHHHHHHHTCCCCEEEEEEEETTTEEEEEEEEESCCC--
T ss_pred c-eEEcccccCeEEECCEEE---------CHH----HHHHHHHHhccCCCccEEEEEEecCCccCCEEEEEEEECCCC--
Confidence 8 667799999999999999 999 9998774 68999998776 67788888888888876543
Q ss_pred ccHHHHHHHHHHHHHhcCCCCCCcEEEECCCCCCCCCCcccHHHHHHHHhcc
Q psy12528 180 FNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSGKIMRRVLRKVAVND 231 (258)
Q Consensus 180 ~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~lP~t~~GKi~r~~l~~~~~~~ 231 (258)
+...++|+++|+++|+.|++|+.+++++++|+|++|||+|++|++.+.+.
T Consensus 306 --~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~l~e~ 355 (358)
T 4gs5_A 306 --EALTERLTAEIRSRVSTYENPKHIYFAKAFAKTQTDKIDKRATFQKLSDS 355 (358)
T ss_dssp --HHHHHHHHHHHHHHSCGGGSCSCEEEESSCCBCTTSCBCHHHHHHHTC--
T ss_pred --CcCHHHHHHHHHhhCCCCCCceEEEEECCcCCCCCCChhHHHHHHHhhhh
Confidence 33347899999999999999999999999999999999999999987664
No 31
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=99.93 E-value=2e-26 Score=219.77 Aligned_cols=162 Identities=19% Similarity=0.237 Sum_probs=130.0
Q ss_pred CCCCcCCCCCCCCCeEEeecccccccccCChHHHhhhcccCCCcCcCCCCeeecCceEEEccCCcEEEEeeCCCeeEECc
Q psy12528 41 RLGDDLNLTLSMNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDDMLNVSG 120 (258)
Q Consensus 41 ~~g~~~~~~~~~~~~~~G~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~w~~TGDl~~~d~~G~l~~~GR~~d~i~~~G 120 (258)
++|..++.+..|+..+.|...+. ||+++++.++..+. +|||+|||+|++ +||+|+|+||.||+||++|
T Consensus 401 ~~g~~~~~g~~GEl~v~g~~~~~--gY~~~~~~~~~~~~---------~g~~~TGDl~~~-~dG~l~~~GR~dd~ik~~G 468 (576)
T 3gqw_A 401 EAGMPVAERVVGHICISGPSLMS--GYFGDQVSQDEIAA---------TGWLDTGDLGYL-LDGYLYVTGRIKDLIIIRG 468 (576)
T ss_dssp TTSCBCCTTBCEEEEEESTTSCC--CBTTCHHHHHHHHH---------HSCEEEEEEEEE-ETTEEEEEEETTTCEEETT
T ss_pred CCCCCCCCCCeEEEEEeCccccc--cccCCccccccccC---------CCeeeccceEEE-ECCEEEEEecCcceEEECC
Confidence 44566666666666666666655 99999999888764 689999999999 7999999999999999999
Q ss_pred EEEEeeecccccCCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCCCccHHHHHHHHHHHHHhc-CCC
Q psy12528 121 HLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKI-GPF 199 (258)
Q Consensus 121 ~~v~~~~~~~~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l-~~~ 199 (258)
++| +|. +||++|.+||+|.++++++..++.. ...+++..... .+...+++.+.+.+++ +.+
T Consensus 469 ~~v---------~p~----eIE~~l~~~p~V~~~~vv~~~~~~~--~~~~~~~~~~~---~~~~~~~l~~~l~~~l~~~~ 530 (576)
T 3gqw_A 469 RNI---------WPQ----DIEYIAEQEPEIHSGDAIAFVTAQE--KIILQIQCRIS---DEERRGQLIHALAARIQSEF 530 (576)
T ss_dssp EEE---------CHH----HHHHHHTTSSSCCTTSEEEEECTTS--CEEEEEECCCC---CHHHHHHHHHHHHHHHHHHH
T ss_pred EEE---------CHH----HHHHHHHhCcccccccEEEEEcCCc--cEEEEEEEecC---chhHHHHHHHHHHHHHHHHh
Confidence 999 999 9999999999999988888776543 33344443322 2233467777888877 678
Q ss_pred CCCcEEEECC--CCCCCCCCcccHHHHHHHHhccc
Q psy12528 200 AMPDVIQHAP--RLPKTRSGKIMRRVLRKVAVNDR 232 (258)
Q Consensus 200 ~~p~~~~~~~--~lP~t~~GKi~r~~l~~~~~~~~ 232 (258)
+.|..+.+++ ++|+|++||++|++|++++.+..
T Consensus 531 ~~p~~i~~v~~~~lP~t~~GKi~r~~l~~~~~~~~ 565 (576)
T 3gqw_A 531 GVTAAIDLLPPHSIPRTSSGKPARAEAKKRYQKAY 565 (576)
T ss_dssp SCCEEEEEECSSCSCBCTTSSBCHHHHHHHHHHHH
T ss_pred CCceeEEEECCCCcCcCCCccchHHHHHHHHHHHh
Confidence 8999888887 89999999999999999997654
No 32
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=99.87 E-value=1.5e-22 Score=187.43 Aligned_cols=120 Identities=13% Similarity=0.163 Sum_probs=95.7
Q ss_pred CCCeeecCceEEEccCC------c---EEEEeeCCCeeEECcEEEEeeecccccCCCCCHHHHHHHHHcCCCcceEEEEe
Q psy12528 88 TNNSDLLLSSARRDEDG------Y---LWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVS 158 (258)
Q Consensus 88 ~~~w~~TGDl~~~d~~G------~---l~~~GR~~d~i~~~G~~v~~~~~~~~~~~~~~~~~iE~~l~~~~~v~~a~vv~ 158 (258)
..+||+|||+++++++| + ++|+||.||+||++|.+| +|. +||++|.+||+|.++++++
T Consensus 297 ~~~~y~TGDl~~~~~~gc~cG~~~~~il~i~GR~dd~ik~~G~~v---------~p~----eiE~~l~~~p~v~~~~vv~ 363 (436)
T 3qov_A 297 PLIRYRTRDLTRILPGKCPCGRTHLRIDRIKGRSDDMFIIKGVNI---------FPM----QVEKILVQFPELGSNYLIT 363 (436)
T ss_dssp CCCSEEEEEEECEECSCCTTCCCSCEECCCCCBSSSCEEETTEEE---------CHH----HHHHHHTTCTTEEEEEEEE
T ss_pred eEEEEEcCCEEEEcCCCCCCCCCccccCcccCccCCEEEECCEEE---------CHH----HHHHHHHhCcCcCCcEEEE
Confidence 36899999999999998 5 699999999999999999 999 9999999999999999999
Q ss_pred eeCCCCCcEEEEEEEeCCCCCcc-HHHHHHHHHHHHHhcCCC-CCCcEEEECC--CCCCCCCCcccHH
Q psy12528 159 RPHPVKGECLYCFITPAGGATFN-QELVKQLKQQVREKIGPF-AMPDVIQHAP--RLPKTRSGKIMRR 222 (258)
Q Consensus 159 ~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~l~~~l~~~l~~~-~~p~~~~~~~--~lP~t~~GKi~r~ 222 (258)
.+++..++.++++|++. +...+ ....+++++.++++++.+ +.|..+.+++ ++|+|+ ||++|.
T Consensus 364 ~~~~~~~~~l~a~v~~~-~~~~~~~~~~~~l~~~l~~~l~~~~~~p~~i~~v~~~~lP~t~-GKi~R~ 429 (436)
T 3qov_A 364 LETVNNQDEMIVEVELS-DLSTDNYIELEKIRRDIIRQLKDEILVTPKVKLVKKGSLPQSE-GKAVRV 429 (436)
T ss_dssp EEEETTEEEEEEEEEEC-TTCCCCHHHHHHHHHHHHHHHHHHHSSCCEEEEECTTCCC--------CE
T ss_pred EEcCCCCcEEEEEEEEc-CccccchhhHHHHHHHHHHHHHHhcCCceEEEEeCCCcccCcC-CcceEE
Confidence 98877788999999988 44332 222356667777776666 7888999998 999999 999885
No 33
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=99.86 E-value=5.1e-22 Score=184.22 Aligned_cols=122 Identities=17% Similarity=0.150 Sum_probs=101.7
Q ss_pred CCeeecCceEEEccC-CcE-----EEEeeCCCeeEECcEEEEeeecccccCCCCCHHHHHHHHHcCCCcceEEEEeeeCC
Q psy12528 89 NNSDLLLSSARRDED-GYL-----WVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHP 162 (258)
Q Consensus 89 ~~w~~TGDl~~~d~~-G~l-----~~~GR~~d~i~~~G~~v~~~~~~~~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~ 162 (258)
.+||+|||+++++++ |++ +++||.||+||++|.+| +|. +||++|.+||+|.+++++++++.
T Consensus 305 ~~~y~TGDl~~~~~~cG~~~~~l~~i~GR~~d~i~~~G~~v---------~p~----eiE~~l~~~p~V~~~~vv~~~~~ 371 (443)
T 2y4o_A 305 VIRYRTRDLTALLPPTARAMRRLAKITGRSDDMLIVRGVNV---------FPS----QIEEIVVALPLLSGQFQITLSRD 371 (443)
T ss_dssp CSSEEEEEEECEECCSSSSSCEECCCCEESSCCEEETTEEE---------CHH----HHHHHHHTSTTEEEEEEEEEEEE
T ss_pred hheeecCCEEEEcCCCCCCccccCccccccCCeEEECCEEE---------CHH----HHHHHHHhCcCcCccEEEEEecC
Confidence 589999999999999 987 89999999999999999 999 99999999999999999988876
Q ss_pred CCCcEEEEEEEeCC--CCCccHHHHHHHHHHHHHhcCCC-CCCcEEEEC--CCCCCCCCCcccHHH
Q psy12528 163 VKGECLYCFITPAG--GATFNQELVKQLKQQVREKIGPF-AMPDVIQHA--PRLPKTRSGKIMRRV 223 (258)
Q Consensus 163 ~~~~~~~~~v~~~~--~~~~~~~~~~~l~~~l~~~l~~~-~~p~~~~~~--~~lP~t~~GKi~r~~ 223 (258)
..++.++++|++.+ +........+++++.|+++++.+ .+|..+.++ +++|+|++||++|..
T Consensus 372 ~~~~~~~a~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~p~~v~~v~~~~lP~t~~GKi~r~~ 437 (443)
T 2y4o_A 372 GHMDRLDLAVELRSEAAASVTDGERAALARELQHRIKTMVGVSSGVTVLAAGGIPATATGKARRVI 437 (443)
T ss_dssp TTEEEEEEEEEECHHHHTTCCHHHHHHHHHHHHHHHHHHTCCCCEEEEECTTCSCCCTTSCCCSEE
T ss_pred CCCceEEEEEEECCcccccchhhHHHHHHHHHHHHHHHHhCCceEEEEeCCCcccCccCCcceEEE
Confidence 66788889998875 22112222357778888888765 488877777 599999999999864
No 34
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=99.83 E-value=2.1e-21 Score=179.78 Aligned_cols=121 Identities=18% Similarity=0.143 Sum_probs=102.4
Q ss_pred CCeeecCceEEEcc-CCcE-----EEEeeCCCeeEECcEEEEeeecccccCCCCCHHHHHHHHHcCCCcceEEEEeeeCC
Q psy12528 89 NNSDLLLSSARRDE-DGYL-----WVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHP 162 (258)
Q Consensus 89 ~~w~~TGDl~~~d~-~G~l-----~~~GR~~d~i~~~G~~v~~~~~~~~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~ 162 (258)
.+||+|||++++|+ +|++ +++||.||+||++|.+| +|. +||++|.+||+|.+++++++++.
T Consensus 303 ~~~y~TGDl~~~~~~~G~~~~~i~~i~GR~~d~i~~~G~~v---------~p~----eiE~~l~~~p~V~~~~vv~~~~~ 369 (437)
T 2y27_A 303 IIRYRTRDLTRLLPGTARTMRRMEKITGRSDDMMIVRGVNV---------FPT----QIEEQLLKQRALAPHYQIVLTKE 369 (437)
T ss_dssp CCSEEEEEEECEECCSSSSSCEECCCCEEGGGCEEETTEEE---------CHH----HHHHHHTTCTTBCSCCEEEEEEE
T ss_pred hheeecCCEEEEeCCCCCCccccCccccccCCeEEECCeEE---------CHH----HHHHHHHhCcCcCccEEEEEeec
Confidence 68999999999998 6985 89999999999999999 999 99999999999999999888877
Q ss_pred CCCcEEEEEEEeCCCCCccHHHHHHHHHHHHHhcCCC-CCCcEEEEC--CCCCCCCCCcccHHH
Q psy12528 163 VKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPF-AMPDVIQHA--PRLPKTRSGKIMRRV 223 (258)
Q Consensus 163 ~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~-~~p~~~~~~--~~lP~t~~GKi~r~~ 223 (258)
..++.++++|++.++........+++++.|+++++.+ .+|..+.++ +++|+|+ ||++|..
T Consensus 370 ~~~~~l~a~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~p~~v~~v~~~~lP~t~-GKi~r~~ 432 (437)
T 2y27_A 370 GPLDVLTLNVEPCPETAPDTAAIQVAKQALAYDIKSLIGVTAVINVLPVNGIERSV-GKARRVV 432 (437)
T ss_dssp TTEEEEEEEECBCTTTTTCHHHHHHHHHHHHHHHHHHHCCCEEEEECCTTCSCCCS-SSCCCEE
T ss_pred CCCceEEEEEEECCCccchhhhHHHHHHHHHHHHHHhcCCceEEEEeCCCCccCCC-CcceEEE
Confidence 6678899999887654322222457788888888777 588888888 5899999 9999863
No 35
>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}
Probab=99.57 E-value=5.8e-15 Score=111.68 Aligned_cols=95 Identities=16% Similarity=0.247 Sum_probs=72.3
Q ss_pred eeCCCeeEECcEEEEeeecccccCCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCCCccHHHHH---
Q psy12528 110 GRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVK--- 186 (258)
Q Consensus 110 GR~~d~i~~~G~~v~~~~~~~~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--- 186 (258)
.|.||||+++|.++ +|. +||++|.+||+|.+++++++++..+++.+.++++...+...+....+
T Consensus 1 srADDmIiv~G~nv---------~P~----eIE~vl~~~p~v~~~~vv~v~~~~~~~~~~~~V~~~~~~~~~~~~~~~l~ 67 (109)
T 3lax_A 1 SNADDMIILKGVNI---------FPI----QIETILLQFKELGSDYLITLETAESNDEMTVEVELSQLFTDDYGRLQALT 67 (109)
T ss_dssp CGGGSCEEETTEEE---------CHH----HHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEECTTCCCCHHHHHHHH
T ss_pred CCcCEEEEECCEEE---------CHH----HHHHHHHhCCCcccceEEEEeccccceeEEEEEEEeeccccccchhhhhH
Confidence 38999999999999 999 99999999999999999999998888999999998877655544334
Q ss_pred -HHHHHHHHhcCCCCCCcEEEEC--CCCCCCCCCcccH
Q psy12528 187 -QLKQQVREKIGPFAMPDVIQHA--PRLPKTRSGKIMR 221 (258)
Q Consensus 187 -~l~~~l~~~l~~~~~p~~~~~~--~~lP~t~~GKi~r 221 (258)
.+++.+.+++. ++..+.++ +.||+| +||++|
T Consensus 68 ~~i~~~l~~~~g---v~~~v~~v~~~~lPrt-sGKi~R 101 (109)
T 3lax_A 68 REITRQLKDEIL---VTPRVKLVPKGALPKS-EGKAVR 101 (109)
T ss_dssp HHHHHHHHHHHS---SCCEEEEECTTCSCCC----CCC
T ss_pred HHHHHHHHHHhC---CccceEEEcCCeecCC-CCCcch
Confidence 44455555443 33344444 579999 799987
No 36
>3gxs_A Phenylacetate-coenzyme A ligase; APC62324.1, structural genomics, PSI-2, protein structure initiative; 1.43A {Bacteroides vulgatus atcc 8482} PDB: 3lax_A
Probab=99.53 E-value=3.5e-14 Score=107.55 Aligned_cols=95 Identities=18% Similarity=0.285 Sum_probs=73.1
Q ss_pred eeCCCeeEECcEEEEeeecccccCCCCCHHHHHHHHHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCCC-----ccHHH
Q psy12528 110 GRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGAT-----FNQEL 184 (258)
Q Consensus 110 GR~~d~i~~~G~~v~~~~~~~~~~~~~~~~~iE~~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~~-----~~~~~ 184 (258)
||.||+|+++|.++ +|. +||++|.+||+|.++++++.+++.+++.+.+++++ ++.. ..+++
T Consensus 1 GR~~D~Iiv~G~nv---------~P~----eIE~~l~~~p~v~~~~~v~v~~~~~~e~l~~~ve~-~~~~~~~~~~~~~l 66 (109)
T 3gxs_A 1 SNADDMIILKGVNI---------FPI----QIETILLQFKELGSDYLITLETAESNDEMTVEVEL-SQLFTDDYGRLQAL 66 (109)
T ss_dssp CGGGSCEEETTEEE---------CHH----HHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEE-CTTCCCCHHHHHHH
T ss_pred CCccCEEEECCEEE---------CHH----HHHHHHHhCCCcCCcEEEEEEcCCCceEEEEEEEE-cCccccchhHHHHH
Confidence 89999999999999 999 99999999999998888888877777899999998 5432 22345
Q ss_pred HHHHHHHHHHhcCCCCCCcEEEECC--CCCCCCCCcccHH
Q psy12528 185 VKQLKQQVREKIGPFAMPDVIQHAP--RLPKTRSGKIMRR 222 (258)
Q Consensus 185 ~~~l~~~l~~~l~~~~~p~~~~~~~--~lP~t~~GKi~r~ 222 (258)
.+.+++.+++.+.. +..+.+++ .||+| +||++|.
T Consensus 67 ~~~i~~~l~~~~~~---~~~v~~v~~~~lPrt-sGKi~R~ 102 (109)
T 3gxs_A 67 TREITRQLKDEILV---TPRVKLVPKGALPKS-EGKAVRV 102 (109)
T ss_dssp HHHHHHHHHHHHSS---CCEEEEECTTCSCCC----CCCE
T ss_pred HHHHHHHHHHhhCC---ceEEEEECCCCccCC-CCceEEE
Confidence 56677777766543 33677776 89999 9999873
No 37
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=99.23 E-value=6.9e-12 Score=116.54 Aligned_cols=74 Identities=11% Similarity=0.033 Sum_probs=55.9
Q ss_pred EEEEeCCCCCcCCCCCCCCCeEEeecccccccccCChHHHhhhcccCCCc---CcCCCCeeecCceEEEccCCcEEEEee
Q psy12528 35 ISILEPRLGDDLNLTLSMNPTLVGRRAMKSLKFQNTSKVRAQLLHGHNNF---SFTTNNSDLLLSSARRDEDGYLWVTGR 111 (258)
Q Consensus 35 ~~i~~~~~g~~~~~~~~~~~~~~G~~~~~~~gy~~~~~~~~~~~~~~~~~---~~~~~~w~~TGDl~~~d~~G~l~~~GR 111 (258)
+.|.+++++..++.++.|+..+.|+.++. ||+++++.|++.|...... ....+|||+|||+|++| ||+|+|+||
T Consensus 404 ~~ivd~~~g~~~~~g~~GEl~v~g~~v~~--GY~~~pe~t~~~f~~~~~~~~~~~~~~~w~~TGDlg~~d-dG~l~~~GR 480 (480)
T 3t5a_A 404 VRIVDSDTCIECPDGTVGEIWVHGDNVAN--GYWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFVT-DGKMFIIGR 480 (480)
T ss_dssp EEEEETTTTEECCTTBCEEEEEESTTSCC--CBTTBHHHHHHHHCBCCSSCCTTCCCCCBEEEEEEEEEE-TTEEEECC-
T ss_pred EEEEcCCCCcCCCCCCEEEEEEeCCcccc--ccccCcchhHHHHhhhhccccCCCCCCCeeeccceeeEE-CCEEEEeCC
Confidence 34555556777888888887777777777 9999999999999522111 11357899999999997 999999998
No 38
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*
Probab=95.12 E-value=0.022 Score=54.40 Aligned_cols=44 Identities=5% Similarity=-0.042 Sum_probs=39.5
Q ss_pred eecCceEEEcc----CCcEEEEeeCCCeeEECcEEEEeeecccccCCCCCHHHHHHHHHcC
Q psy12528 92 DLLLSSARRDE----DGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASH 148 (258)
Q Consensus 92 ~~TGDl~~~d~----~G~l~~~GR~~d~i~~~G~~v~~~~~~~~~~~~~~~~~iE~~l~~~ 148 (258)
|++||+++++. ...+.|+||.++++++.|.++ .+. ++|+++.+.
T Consensus 400 Yr~GD~v~v~~f~~~~p~i~f~gR~~~~l~~~Gekl---------~~~----~v~~al~~a 447 (581)
T 4eql_A 400 MRVGDIVLVTGFYNNAPQFKFVRRENVVLSIDSDKT---------NEE----DLFKAVSQA 447 (581)
T ss_dssp EECCEEEEEEEEETTEEEEEEEEETTEEECSSSCCE---------EHH----HHHHHHHHC
T ss_pred EEcCCEEEEcccCCCCcEEEEEEecCCEEEeeeeEC---------CHH----HHHHHHHHH
Confidence 89999999975 457999999999999999999 888 999998854
No 39
>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}
Probab=95.09 E-value=0.049 Score=52.29 Aligned_cols=43 Identities=12% Similarity=0.100 Sum_probs=38.8
Q ss_pred eecCceEEEcc----CCcEEEEeeCCCeeEECcEEEEeeecccccCCCCCHHHHHHHHHc
Q psy12528 92 DLLLSSARRDE----DGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLAS 147 (258)
Q Consensus 92 ~~TGDl~~~d~----~G~l~~~GR~~d~i~~~G~~v~~~~~~~~~~~~~~~~~iE~~l~~ 147 (258)
|++||+++++. ...+.|+||.+++|++.|.++ .+. ++|+++..
T Consensus 412 Yr~GD~v~v~~f~~~~p~i~~~gR~~~~l~~~Geki---------~~~----~v~~av~~ 458 (609)
T 4b2g_A 412 YRVGDILRVTGFHNSAPQFHFVRRKNVLLSIDSDKT---------DEA----ELQKAVDN 458 (609)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCB---------CHH----HHHHHHHH
T ss_pred eecCCEEEEeecCCCCcEEEEEEecCCeEEccccCC---------CHH----HHHHHHHH
Confidence 89999999973 468999999999999999999 999 99998873
No 40
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}
Probab=94.31 E-value=0.11 Score=49.50 Aligned_cols=43 Identities=12% Similarity=-0.041 Sum_probs=38.2
Q ss_pred eecCceEEEccC----CcEEEEeeCCCeeEECcEEEEeeecccccCCCCCHHHHHHHHHc
Q psy12528 92 DLLLSSARRDED----GYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLAS 147 (258)
Q Consensus 92 ~~TGDl~~~d~~----G~l~~~GR~~d~i~~~G~~v~~~~~~~~~~~~~~~~~iE~~l~~ 147 (258)
|++||.++++.- ..+.|+||.++++++.|.++ .+. ++|.++..
T Consensus 407 Yr~GD~v~v~g~~~~~p~~~~~gR~~~~l~~~Ge~~---------~~~----~v~~al~~ 453 (581)
T 4epl_A 407 YRLGDVVKVIGFYNNTPQLKFICRRNLILSINIDKN---------TER----DLQLSVES 453 (581)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCB---------CHH----HHHHHHHH
T ss_pred EEcCCEEEEecccCCCcEEEEEeecCCeEEeeeeEC---------CHH----HHHHHHHH
Confidence 899999999642 46999999999999999999 998 99998874
No 41
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=89.80 E-value=0.11 Score=45.81 Aligned_cols=31 Identities=13% Similarity=-0.079 Sum_probs=13.6
Q ss_pred eeecCceEEEccC--C-------cEEEEeeCCCeeEECcE
Q psy12528 91 SDLLLSSARRDED--G-------YLWVTGRVDDMLNVSGH 121 (258)
Q Consensus 91 w~~TGDl~~~d~~--G-------~l~~~GR~~d~i~~~G~ 121 (258)
+|+|||++++... | .+..++|.++..++.|.
T Consensus 329 ry~tgD~~~~~~~~~g~~~d~~~~v~~~~~~~~~~~i~gv 368 (369)
T 3hgu_A 329 RVAERDTAIRLPGVSGFAGDRLADIEPLKISEGRKVIEGV 368 (369)
T ss_dssp EEEEEEEEEEECCSTTCSSCEEEEEEECC-----------
T ss_pred cccCCceEEEecCCCCCcCcccccceeccccCCCceeeec
Confidence 4889999987432 2 35666777777777764
No 42
>2zzt_A Putative uncharacterized protein; cation diffusion facilitator (CDF), transporter, zinc, membrane protein, cytosolic domain; 2.84A {Thermotoga maritima}
Probab=24.73 E-value=1.8e+02 Score=20.32 Aligned_cols=58 Identities=16% Similarity=0.186 Sum_probs=33.9
Q ss_pred HHHHHHHcCCCcceEEEEeeeCCCCCcEEEEEEEeCCCCCccH--HHHHHHHHHHHHhcC
Q psy12528 140 EVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQ--ELVKQLKQQVREKIG 197 (258)
Q Consensus 140 ~iE~~l~~~~~v~~a~vv~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~l~~~l~~~l~ 197 (258)
+|++.+.+.|+|.++-=+-.-..+..-.+-+-+.+.+..+..+ ++..++.+.+++.++
T Consensus 14 ~I~~~l~~~~gV~~vh~lr~r~~G~~~~v~~hI~v~~~~sv~eah~i~~~ie~~L~~~~~ 73 (107)
T 2zzt_A 14 DIFAVLERFPNVHNPHRVRIRRVGTKYFIEMDIEVDGKMSVKDAHELTVKIRKEMLKRRD 73 (107)
T ss_dssp HHHHHHTTCSSCEEEEEEEEECSCC-CEEEEEEEECTTSCHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHcCCCccccEEEEEEEECCcEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 6888888999998765433322222223444455555443333 456777777777765
Done!