RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy12528
(258 letters)
>gnl|CDD|234677 PRK00174, PRK00174, acetyl-CoA synthetase; Provisional.
Length = 637
Score = 238 bits (611), Expect = 9e-75
Identities = 87/159 (54%), Positives = 110/159 (69%), Gaps = 13/159 (8%)
Query: 97 SARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAV 156
ARRDEDGY W+TGRVDD+LNVSGH + TA E+E+ L +HP V+EAAV
Sbjct: 490 GARRDEDGYYWITGRVDDVLNVSGHRL---------GTA----EIESALVAHPKVAEAAV 536
Query: 157 VSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRS 216
V RP +KG+ +Y F+T GG + EL K+L+ VR++IGP A PDVIQ AP LPKTRS
Sbjct: 537 VGRPDDIKGQGIYAFVTLKGGEEPSDELRKELRNWVRKEIGPIAKPDVIQFAPGLPKTRS 596
Query: 217 GKIMRRVLRKVAVNDREVGDKSTLADEDVVDELFQNRPE 255
GKIMRR+LRK+A + +GD STLAD VV++L + R
Sbjct: 597 GKIMRRILRKIAEGEEILGDTSTLADPSVVEKLIEARQN 635
>gnl|CDD|213313 cd05966, ACS, Acetyl-CoA synthetase (also known as acetate-CoA
ligase and acetyl-activating enzyme). Acetyl-CoA
synthetase (ACS) catalyzes the formation of acetyl-CoA
from acetate, CoA, and ATP. Synthesis of acetyl-CoA is
carried out in a two-step reaction. In the first step,
the enzyme catalyzes the synthesis of acetyl-AMP
intermediate from acetate and ATP. In the second step,
acetyl-AMP reacts with CoA to produce acetyl-CoA. This
enzyme is widely present in all living organisms. The
activity of this enzyme is crucial for maintaining the
required levels of acetyl-CoA, a key intermediate in
many important biosynthetic and catabolic processes.
Acetyl-CoA is used in the biosynthesis of glucose, fatty
acids, and cholesterol. It can also be used in the
production of energy in the citric acid cycle.
Eukaryotes typically have two isoforms of acetyl-CoA
synthetase, a cytosolic form involved in biosynthetic
processes and a mitochondrial form primarily involved in
energy generation.
Length = 602
Score = 232 bits (594), Expect = 1e-72
Identities = 81/145 (55%), Positives = 99/145 (68%), Gaps = 13/145 (8%)
Query: 98 ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVV 157
ARRDEDGY W+ GRVDD++NVSGH + TA EVE+ L SHP V+EAAVV
Sbjct: 471 ARRDEDGYYWILGRVDDVINVSGHRL---------GTA----EVESALVSHPAVAEAAVV 517
Query: 158 SRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSG 217
+P VKGE +Y F+T G + EL K+LK+ VR++IGP A PD I P LPKTRSG
Sbjct: 518 GKPDEVKGEAIYAFVTLKDGVEPSDELRKELKKHVRKEIGPIATPDEIIFVPGLPKTRSG 577
Query: 218 KIMRRVLRKVAVNDREVGDKSTLAD 242
KIMRR+LRK+A + E+GD STL D
Sbjct: 578 KIMRRILRKIAAGEEELGDTSTLED 602
>gnl|CDD|233770 TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase. This model
describes acetate-CoA ligase (EC 6.2.1.1), also called
acetyl-CoA synthetase and acetyl-activating enzyme. It
catalyzes the reaction ATP + acetate + CoA = AMP +
diphosphate + acetyl-CoA and belongs to the family of
AMP-binding enzymes described by pfam00501.
Length = 625
Score = 221 bits (565), Expect = 3e-68
Identities = 81/156 (51%), Positives = 107/156 (68%), Gaps = 14/156 (8%)
Query: 98 ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVV 157
ARRD+DGY+W+TGRVDD++NVSGH + TA E+E+ L SHP V+EAAVV
Sbjct: 483 ARRDKDGYIWITGRVDDVINVSGHRL---------GTA----EIESALVSHPAVAEAAVV 529
Query: 158 SRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSG 217
P +KG+ +Y F+T G + EL K+L++ VR++IGP A PD I+ P LPKTRSG
Sbjct: 530 GIPDDIKGQAIYAFVTLKDGYEPDDELRKELRKHVRKEIGPIAKPDKIRFVPGLPKTRSG 589
Query: 218 KIMRRVLRKVAVNDRE-VGDKSTLADEDVVDELFQN 252
KIMRR+LRK+A + E +GD STL D VV+EL +
Sbjct: 590 KIMRRLLRKIAAGEEEILGDTSTLEDPSVVEELIEA 625
>gnl|CDD|215353 PLN02654, PLN02654, acetate-CoA ligase.
Length = 666
Score = 168 bits (426), Expect = 4e-48
Identities = 82/152 (53%), Positives = 100/152 (65%), Gaps = 14/152 (9%)
Query: 99 RRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVS 158
RD+DGY W+TGRVDD++NVSGH + TA EVE+ L SHP +EAAVV
Sbjct: 522 SRDKDGYYWLTGRVDDVINVSGHRI---------GTA----EVESALVSHPQCAEAAVVG 568
Query: 159 RPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSGK 218
H VKG+ +Y F+T G +++EL K L VR +IG FA PD I AP LPKTRSGK
Sbjct: 569 IEHEVKGQGIYAFVTLVEGVPYSEELRKSLILTVRNQIGAFAAPDKIHWAPGLPKTRSGK 628
Query: 219 IMRRVLRKVAVND-REVGDKSTLADEDVVDEL 249
IMRR+LRK+A E+GD STLAD VVD+L
Sbjct: 629 IMRRILRKIASRQLDELGDTSTLADPGVVDQL 660
>gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases
[Lipid metabolism].
Length = 528
Score = 157 bits (399), Expect = 9e-45
Identities = 59/142 (41%), Positives = 79/142 (55%), Gaps = 17/142 (11%)
Query: 98 ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVV 157
A RDEDGY W+ GR DD++ VSG + E+E+ L +HP V+EAAVV
Sbjct: 404 AERDEDGYFWLHGRSDDVIKVSGKRI---------GPL----EIESVLLAHPAVAEAAVV 450
Query: 158 SRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSG 217
P P KG+ + F+ A G N EL +++++ V IGP A+P I+ LPKT SG
Sbjct: 451 GVPDPGKGQIVLAFVVLAAGVEPN-ELAEEIRRHVARNIGPHAIPRKIRFVDELPKTASG 509
Query: 218 KIMRRVLRKVAVNDREVGDKST 239
KI RR+LRK+ D ST
Sbjct: 510 KIQRRLLRKILHKGE---DLST 528
>gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily
similar to Acetoacetyl-CoA synthetase. This
uncharacterized acyl-CoA synthetase family is highly
homologous to acetoacetyl-CoA synthetase. However, the
proteins in this family exist in only bacteria and
archaea. AACS is a cytosolic ligase that specifically
activates acetoacetate to its coenzyme A ester by a
two-step reaction. Acetoacetate first reacts with ATP to
form an acyl-adenylate intermediate, which then reacts
with CoA to produce an acyl-CoA ester. This is the first
step of the mevalonate pathway of isoprenoid
biosynthesis via isopentenyl diphosphate. Isoprenoids
are a large class of compounds found in all living
organisms.
Length = 474
Score = 137 bits (346), Expect = 1e-37
Identities = 57/146 (39%), Positives = 79/146 (54%), Gaps = 16/146 (10%)
Query: 98 ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVV 157
A DEDGY ++ GR DD + V+G + G E+E+ L SHP V+EAA +
Sbjct: 343 ALVDEDGYWYILGRSDDTIKVAGKRV-----GP--------AEIESVLNSHPAVAEAAAI 389
Query: 158 SRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIG-PFAMPDVIQHAPRLPKTRS 216
P PVKGE + CF+ G T + L +L V + +G PF P + LPKTR+
Sbjct: 390 GVPDPVKGEAIVCFVVLKPGVTPSAALEAELADHVGDALGKPFR-PREVHFVSDLPKTRN 448
Query: 217 GKIMRRVLRKVAVNDREVGDKSTLAD 242
GKIMRRV+R + + GD S+L +
Sbjct: 449 GKIMRRVIRAAYLG-QPPGDLSSLEN 473
>gnl|CDD|213314 cd05967, PrpE, Propionyl-CoA synthetase (PrpE). PrpE catalyzes the
first step of the 2-methylcitric acid cycle for
propionate catabolism. It activates propionate to
propionyl-CoA in a two-step reaction, which proceeds
through a propionyl-AMP intermediate and requires ATP
and Mg2+. In Salmonella enterica, the PrpE protein is
required for growth of S. enterica on propionate and can
substitute for the acetyl-CoA synthetase (Acs) enzyme
during growth on acetate. PrpE can also activate
acetate, 3HP, and butyrate to their corresponding
CoA-thioesters, although with less efficiency.
Length = 607
Score = 134 bits (339), Expect = 5e-36
Identities = 61/154 (39%), Positives = 86/154 (55%), Gaps = 15/154 (9%)
Query: 97 SARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAV 156
S +DEDGYL+V GR DD++NV+GH + ST E+E + HPDV+E AV
Sbjct: 468 SGYKDEDGYLFVMGRTDDVINVAGHRL---------STG----EMEESVLKHPDVAECAV 514
Query: 157 VSRPHPVKGECLYCFITPAGGATFNQE-LVKQLKQQVREKIGPFAMPDVIQHAPRLPKTR 215
V +KG+ + + + L ++ VRE+IGP A + RLPKTR
Sbjct: 515 VGVRDELKGQVPLGLVVLKDDCKIDADQLENEIVALVREQIGPVAAFRNVVFVKRLPKTR 574
Query: 216 SGKIMRRVLRKVAVNDREVGDKSTLADEDVVDEL 249
SGKI+RR LRK+A + + D ST+ D V+DE+
Sbjct: 575 SGKILRRTLRKIA-DGEDYKDPSTIEDPSVLDEI 607
>gnl|CDD|235279 PRK04319, PRK04319, acetyl-CoA synthetase; Provisional.
Length = 570
Score = 133 bits (336), Expect = 9e-36
Identities = 60/150 (40%), Positives = 85/150 (56%), Gaps = 22/150 (14%)
Query: 97 SARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAV 156
SA DEDGY W GRVDD++ SG + G + EVE+ L HP V+EA V
Sbjct: 439 SAYMDEDGYFWFQGRVDDVIKTSGERV-----GPF--------EVESKLMEHPAVAEAGV 485
Query: 157 VSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRS 216
+ +P PV+GE + F+ G ++EL ++++ V++ +G A P I+ +LPKTRS
Sbjct: 486 IGKPDPVRGEIIKAFVALRPGYEPSEELKEEIRGFVKKGLGAHAAPREIEFKDKLPKTRS 545
Query: 217 GKIMRRVLRKVAVNDREV----GDKSTLAD 242
GKIMRRVL+ E+ GD ST+ D
Sbjct: 546 GKIMRRVLKA-----WELGLPEGDLSTMED 570
>gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or
ACSM). MACS catalyzes the two-step activation of medium
chain fatty acids (containing 4-12 carbons). The
carboxylate substrate first reacts with ATP to form an
acyl-adenylate intermediate, which then reacts with CoA
to produce an acyl-CoA ester. The acyl-CoA is a key
intermediate in many important biosynthetic and
catabolic processes.
Length = 430
Score = 123 bits (311), Expect = 8e-33
Identities = 54/129 (41%), Positives = 73/129 (56%), Gaps = 13/129 (10%)
Query: 98 ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVV 157
A +DEDGY W GR DD++ SG Y G + EVE+ L HP V+EAAVV
Sbjct: 315 AIKDEDGYFWFVGRADDVIKSSG-----YRIGPF--------EVESALIEHPAVAEAAVV 361
Query: 158 SRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSG 217
P PV+GE + F+ A G ++EL K+L++ V+++ P+ P I+ LPKT SG
Sbjct: 362 GSPDPVRGEVVKAFVVLAPGYQPSEELAKELQEHVKKRTAPYKYPREIEFVEELPKTVSG 421
Query: 218 KIMRRVLRK 226
KI R LR
Sbjct: 422 KIRRVELRA 430
>gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I. This
family includes acyl- and aryl-CoA ligases, as well as
the adenylation domain of nonribosomal peptide
synthetases and firefly luciferases. The
adenylate-forming enzymes catalyze an ATP-dependent
two-step reaction to first activate a carboxylate
substrate as an adenylate and then transfer the
carboxylate to the pantetheine group of either coenzyme
A or an acyl-carrier protein. The active site of the
domain is located at the interface of a large N-terminal
subdomain and a smaller C-terminal subdomain.
Length = 338
Score = 115 bits (291), Expect = 2e-30
Identities = 47/124 (37%), Positives = 66/124 (53%), Gaps = 18/124 (14%)
Query: 98 ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVF-TEVEACLASHPDVSEAAV 156
DE+GYL++TGR D++ V G V+ EVE+ L HP V+EAAV
Sbjct: 232 GYLDEEGYLYITGRSKDLIKVGGE--------------NVYPAEVESVLLQHPAVAEAAV 277
Query: 157 VSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRS 216
V P +GE + F+ GA L ++LK +RE++ P+ +P VI+ LPKT S
Sbjct: 278 VGVPDEDRGERIVAFVVLRPGAD---ALAEELKAHLRERLAPYKVPRVIEFVDELPKTAS 334
Query: 217 GKIM 220
GKI
Sbjct: 335 GKID 338
>gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain
acyl-CoA synthetase (MACS). MACS catalyzes the two-step
activation of medium chain fatty acids (containing 4-12
carbons). The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. MACS
enzymes are localized to mitochondria.
Length = 439
Score = 113 bits (284), Expect = 5e-29
Identities = 51/130 (39%), Positives = 67/130 (51%), Gaps = 13/130 (10%)
Query: 97 SARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAV 156
RRD DGYLW GR DD++ SG Y G E+E CL HP V EAAV
Sbjct: 323 LGRRDADGYLWFKGRADDVIKSSG-----YRIGP--------AEIEECLLKHPAVLEAAV 369
Query: 157 VSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRS 216
V P P +GE + F+ A G + EL +L++ V+ ++ P I+ LP T +
Sbjct: 370 VGVPDPERGEIVKAFVVLAEGVEPSDELATELQELVKSRLAAHEYPREIEFVDELPMTTT 429
Query: 217 GKIMRRVLRK 226
GKI RR LR+
Sbjct: 430 GKIRRRELRR 439
>gnl|CDD|182517 PRK10524, prpE, propionyl-CoA synthetase; Provisional.
Length = 629
Score = 113 bits (286), Expect = 1e-28
Identities = 51/149 (34%), Positives = 77/149 (51%), Gaps = 21/149 (14%)
Query: 100 RDEDGYLWVTGRVDDMLNVSGH-LMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVS 158
RD DGY ++ GR DD++NV+GH L T E+E ++SHP V+E AVV
Sbjct: 483 RDADGYYFILGRTDDVINVAGHRLGT--------------REIEESISSHPAVAEVAVVG 528
Query: 159 RPHPVKGECLYCFITPAGGATFN-----QELVKQLKQQVREKIGPFAMPDVIQHAPRLPK 213
+KG+ F+ P + L K++ V ++G A P + LPK
Sbjct: 529 VKDALKGQVAVAFVVPKDSDSLADREARLALEKEIMALVDSQLGAVARPARVWFVSALPK 588
Query: 214 TRSGKIMRRVLRKVAVNDREVGDKSTLAD 242
TRSGK++RR ++ +A R+ GD +T+ D
Sbjct: 589 TRSGKLLRRAIQAIA-EGRDPGDLTTIED 616
>gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA
synthetase like family (ACS). This family is most
similar to acetyl-CoA synthetase. Acetyl-CoA synthetase
(ACS) catalyzes the formation of acetyl-CoA from
acetate, CoA, and ATP. Synthesis of acetyl-CoA is
carried out in a two-step reaction. In the first step,
the enzyme catalyzes the synthesis of acetyl-AMP
intermediate from acetate and ATP. In the second step,
acetyl-AMP reacts with CoA to produce acetyl-CoA. This
enzyme is only present in bacteria.
Length = 443
Score = 112 bits (281), Expect = 1e-28
Identities = 52/129 (40%), Positives = 73/129 (56%), Gaps = 13/129 (10%)
Query: 97 SARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAV 156
A RDEDGY W GR DD++ +GHL+ + EVE+ L HP V+EA V
Sbjct: 327 LAYRDEDGYFWFVGRADDVIKTAGHLVGPF-------------EVESALMEHPAVAEAGV 373
Query: 157 VSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRS 216
+ +P PV GE + F++ G ++EL ++L R+++G P I LPKTRS
Sbjct: 374 IGKPDPVAGEIVKAFVSLRPGFEPSEELRRELLTFARQRLGAAVAPREIHFVDNLPKTRS 433
Query: 217 GKIMRRVLR 225
GKIMRR+L+
Sbjct: 434 GKIMRRLLK 442
>gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases
II [Lipid metabolism / Secondary metabolites
biosynthesis, transport, and catabolism].
Length = 534
Score = 111 bits (278), Expect = 7e-28
Identities = 41/130 (31%), Positives = 66/130 (50%), Gaps = 16/130 (12%)
Query: 98 ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFT-EVEACLASHPDVSEAAV 156
DEDGYL++ GR+ D++ G ++ E+EA LA HP V+EAAV
Sbjct: 409 GYVDEDGYLYIVGRLKDLIISGGE--------------NIYPEEIEAVLAEHPAVAEAAV 454
Query: 157 VSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRS 216
V P GE + + G + ++L+ +R+++ + +P ++ LP+T S
Sbjct: 455 VGVPDERWGERVVAVVVLKPGGDA-ELTAEELRAFLRKRLALYKVPRIVVFVDELPRTAS 513
Query: 217 GKIMRRVLRK 226
GKI RR LR+
Sbjct: 514 GKIDRRALRE 523
>gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and
4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase).
Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A
ligase catalyze the first activating step for benzoate
and 4-hydroxybenzoate catabolic pathways, respectively.
Although these two enzymes share very high sequence
homology, they have their own substrate preference. The
reaction proceeds via a two-step process; the first
ATP-dependent step forms the substrate-AMP intermediate,
while the second step forms the acyl-CoA ester,
releasing the AMP. Aromatic compounds represent the
second most abundant class of organic carbon compounds
after carbohydrates. Some bacteria can use benzoic acid
or benzenoid compounds as the sole source of carbon and
energy through degradation. Benzoate CoA ligase and
4-hydroxybenzoate-Coenzyme A ligase are key enzymes of
this process.
Length = 506
Score = 107 bits (270), Expect = 9e-27
Identities = 51/127 (40%), Positives = 61/127 (48%), Gaps = 13/127 (10%)
Query: 99 RRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVS 158
RDEDGY W GR DDML VSG + V F EVE L HP V EAAVV
Sbjct: 393 YRDEDGYYWYCGRSDDMLKVSG--IWVSPF-----------EVEDALLQHPAVLEAAVVG 439
Query: 159 RPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSGK 218
F+ G + EL +LK V++K+ P+ P I+ LPKT +GK
Sbjct: 440 AEDEDGLTKPKAFVVLKDGYQPSPELETELKDFVKDKLAPYKYPRWIEFVDELPKTATGK 499
Query: 219 IMRRVLR 225
I R LR
Sbjct: 500 IQRFKLR 506
>gnl|CDD|213321 cd05974, MACS_like_1, Uncharacterized subfamily of medium-chain
acyl-CoA synthetase (MACS). MACS catalyzes the two-step
activation of medium chain fatty acids (containing 4-12
carbons). The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. MACS
enzymes are localized to mitochondria.
Length = 433
Score = 105 bits (265), Expect = 2e-26
Identities = 51/131 (38%), Positives = 66/131 (50%), Gaps = 13/131 (9%)
Query: 98 ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVV 157
A RDEDGYLW GR DD+ S Y + EVE+ L HP V+EAAVV
Sbjct: 316 AYRDEDGYLWFVGRADDVFKSSD-----YRISPF--------EVESALLEHPAVAEAAVV 362
Query: 158 SRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSG 217
P P++ +I G ++EL +L VRE++ P+ I+ LPKT SG
Sbjct: 363 PSPDPIRLAVPKAYIVLKPGYEPSRELALELFAHVRERLAPYKRIRRIEFVGELPKTISG 422
Query: 218 KIMRRVLRKVA 228
KI R LRK+
Sbjct: 423 KIRRVELRKIE 433
>gnl|CDD|213317 cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA synthetase (MACS)
of AAE_MA like. MACS catalyzes the two-step activation
of medium chain fatty acids (containing 4-12 carbons).
The carboxylate substrate first reacts with ATP to form
an acyl-adenylate intermediate, which then reacts with
CoA to produce an acyl-CoA ester. This family of MACS
enzymes is found in archaea and bacteria. It is
represented by the acyl-adenylating enzyme from
Methanosarcina acetivorans (AAE_MA). AAE_MA is most
active with propionate, butyrate, and the branched
analogs: 2-methyl-propionate, butyrate, and pentanoate.
The specific activity is weaker for smaller or larger
acids.
Length = 537
Score = 103 bits (259), Expect = 2e-25
Identities = 50/126 (39%), Positives = 67/126 (53%), Gaps = 14/126 (11%)
Query: 98 ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVV 157
A DEDGYLW GR DD++ SG Y G + EVE+ L HP V E AV
Sbjct: 420 AWMDEDGYLWFVGRADDLIKSSG-----YRIGPF--------EVESALIQHPAVLECAVT 466
Query: 158 SRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSG 217
P P++G+ + I G ++EL K+L+ V++ P+ P +I+ LPKT SG
Sbjct: 467 GVPDPIRGQVVKATIVLTKGYEPSEELKKELQDHVKKVTAPYKYPRIIEFVDELPKTISG 526
Query: 218 KIMRRV 223
KI RRV
Sbjct: 527 KI-RRV 531
>gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain
acyl-CoA synthetase (MACS). MACS catalyzes the two-step
activation of medium chain fatty acids (containing 4-12
carbons). The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. MACS
enzymes are localized to mitochondria.
Length = 440
Score = 101 bits (254), Expect = 7e-25
Identities = 49/129 (37%), Positives = 72/129 (55%), Gaps = 13/129 (10%)
Query: 98 ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVV 157
RDEDGY W GR DD++ +G Y G + +VE+ L HP V+EAAVV
Sbjct: 325 VERDEDGYFWFIGRADDVIISAG-----YRIGPF--------DVESALLEHPAVAEAAVV 371
Query: 158 SRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSG 217
P P++GE + F+ G + EL ++L+ V++++ A P ++ P LPKT SG
Sbjct: 372 GVPDPLRGEIVKAFVVLKEGYAGSDELAEELQLFVKKRLSAHAYPREVEFVPALPKTPSG 431
Query: 218 KIMRRVLRK 226
KI R +LR+
Sbjct: 432 KIQRFLLRQ 440
>gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 347
Score = 100 bits (251), Expect = 8e-25
Identities = 44/128 (34%), Positives = 61/128 (47%), Gaps = 16/128 (12%)
Query: 98 ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVV 157
DEDGYL + GR+ DM+ G Y E+E L +HP V+EAAVV
Sbjct: 236 GYMDEDGYLRIVGRIKDMIIRGG-------ENIYP------AEIEEALLTHPAVAEAAVV 282
Query: 158 SRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSG 217
P GE + F+ GAT +E +L R ++ F +P ++ LP+T SG
Sbjct: 283 GVPDERLGEVVAAFVVLKPGATLTEE---ELIAFCRGRLARFKVPRYVRFVDELPRTASG 339
Query: 218 KIMRRVLR 225
KI + LR
Sbjct: 340 KIQKFKLR 347
>gnl|CDD|213294 cd05928, MACS_euk, Eukaryotic Medium-chain acyl-CoA synthetase
(MACS or ACSM). MACS catalyzes the two-step activation
of medium chain fatty acids (containing 4-12 carbons).
The carboxylate substrate first reacts with ATP to form
an acyl-adenylate intermediate, which then reacts with
CoA to produce an acyl-CoA ester. The acyl-CoA is a key
intermediate in many important biosynthetic and
catabolic processes. MACS enzymes are localized to
mitochondria. Two murine MACS family proteins are found
in liver and kidney. In rodents, a MACS member is
detected particularly in the olfactory epithelium and is
called O-MACS. O-MACS demonstrates substrate preference
for the fatty acid lengths of C6-C12.
Length = 530
Score = 101 bits (254), Expect = 1e-24
Identities = 49/131 (37%), Positives = 69/131 (52%), Gaps = 15/131 (11%)
Query: 98 ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVV 157
DEDGY W GR DD++N SG Y G + EVE+ L HP V E+AVV
Sbjct: 410 GIMDEDGYFWFVGRADDVINSSG-----YRIGPF--------EVESALIEHPAVVESAVV 456
Query: 158 SRPHPVKGECLYCFI--TPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTR 215
S P P++GE + F+ P + ++L K+L++ V+ P+ P ++ LPKT
Sbjct: 457 SSPDPIRGEVVKAFVVLAPQFLSHDPEQLTKELQEHVKSVTAPYKYPRKVEFVQELPKTI 516
Query: 216 SGKIMRRVLRK 226
+GKI R LR
Sbjct: 517 TGKIKRNELRD 527
>gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA
synthetases similar to Escherichia coli FadD. This
subfamily of the AMP-forming adenylation family contains
Escherichia coli FadD and similar prokaryotic fatty acid
CoA synthetases. FadD was characterized as a long-chain
fatty acid CoA synthetase. The gene fadD is regulated by
the fatty acid regulatory protein FadR. Fatty acid CoA
synthetase catalyzes the formation of fatty acyl-CoA in
a two-step reaction: the formation of a fatty acyl-AMP
molecule as an intermediate, followed by the formation
of a fatty acyl-CoA. This is a required step before free
fatty acids can participate in most catabolic and
anabolic reactions.
Length = 468
Score = 98.7 bits (247), Expect = 1e-23
Identities = 45/129 (34%), Positives = 64/129 (49%), Gaps = 18/129 (13%)
Query: 98 ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVF-TEVEACLASHPDVSEAAV 156
DEDGY ++ R DM+ V G V+ E+E L SHP V EAAV
Sbjct: 357 GYMDEDGYFYIVDRKKDMIIVGGF--------------NVYPREIEEVLYSHPAVLEAAV 402
Query: 157 VSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRS 216
V P P +GE + F+ GA+ +E +L RE++ + +P ++ LPK+
Sbjct: 403 VGVPDPYRGEAVKAFVVLKEGASLTEE---ELIAFCRERLAAYKVPRQVEFRDELPKSAV 459
Query: 217 GKIMRRVLR 225
GKI+RR LR
Sbjct: 460 GKILRRELR 468
>gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar
proteins. Bile acid-Coenzyme A ligase catalyzes the
formation of bile acid-CoA conjugates in a two-step
reaction: the formation of a bile acid-AMP molecule as
an intermediate, followed by the formation of a bile
acid-CoA. This ligase requires a bile acid with a free
carboxyl group, ATP, Mg2+, and CoA for synthesis of the
final bile acid-CoA conjugate. The bile acid-CoA
ligation is believed to be the initial step in the bile
acid 7alpha-dehydroxylation pathway in the intestinal
bacterium Eubacterium sp.
Length = 342
Score = 96.4 bits (241), Expect = 3e-23
Identities = 40/129 (31%), Positives = 63/129 (48%), Gaps = 18/129 (13%)
Query: 98 ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVF-TEVEACLASHPDVSEAAV 156
DEDGYL++ R DM+ +SG G ++ EVE L +HP V++ AV
Sbjct: 231 GYLDEDGYLYIVDRKKDMI-ISG--------GE-----NIYPAEVENVLLAHPAVADVAV 276
Query: 157 VSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRS 216
+ P GE + + GAT ++L RE++ + +P ++ LP+ S
Sbjct: 277 IGVPDEEWGEAVVAVVVLRPGAT---LDAEELIAFCRERLAGYKVPKSVEFVDELPRNAS 333
Query: 217 GKIMRRVLR 225
GKI++R LR
Sbjct: 334 GKILKRELR 342
>gnl|CDD|131369 TIGR02316, propion_prpE, propionate--CoA ligase. This family
contains one of three readily separable clades of
proteins in the group of acetate and propionate--CoA
ligases. Characterized members of this family act on
propionate. From propionyl-CoA, there is a cyclic
degradation pathway: it is ligated by PrpC to the TCA
cycle intermediate oxaloacetate, acted upon further by
PrpD and an aconitase, then cleaved by PrpB to pyruvate
and the TCA cycle intermediate succinate.
Length = 628
Score = 97.7 bits (243), Expect = 4e-23
Identities = 50/157 (31%), Positives = 80/157 (50%), Gaps = 19/157 (12%)
Query: 100 RDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSR 159
RDEDGY ++ GR DD++NV+GH + E+E ++SHP V+E AVV
Sbjct: 482 RDEDGYTFILGRTDDVINVAGHRLGT-------------REIEESVSSHPSVAEVAVVGV 528
Query: 160 PHPVKGECLYCFITP-----AGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKT 214
+KG+ F AG A + + V ++G A P + LPKT
Sbjct: 529 HDELKGQVAVVFAILKESDSAGDAHDPHAVETGMMDCVVRQLGAVARPARVYFVAALPKT 588
Query: 215 RSGKIMRRVLRKVAVNDREVGDKSTLADEDVVDELFQ 251
RSGK++RR ++ +A R+ GD +T+ D ++++ +
Sbjct: 589 RSGKLLRRSIQALA-EGRDPGDLTTIDDPGALEQVRR 624
>gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 350
Score = 94.6 bits (236), Expect = 1e-22
Identities = 41/129 (31%), Positives = 63/129 (48%), Gaps = 18/129 (13%)
Query: 98 ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKV-FTEVEACLASHPDVSEAAV 156
R DE+GYL+ GR DDM+ G+ +V TE+E + +HP V+EAAV
Sbjct: 239 VRMDEEGYLYFVGRKDDMIKTRGY--------------RVSPTEIEEVICAHPLVAEAAV 284
Query: 157 VSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRS 216
+ P P+ G+ + + A G K+L + R+ + + +P I LPK +
Sbjct: 285 IGVPDPLLGQAIVAVVVSADG---ESLDEKELLKHCRKHLPNYMVPAEIVFVDSLPKNAN 341
Query: 217 GKIMRRVLR 225
GK+ R LR
Sbjct: 342 GKVDRSALR 350
>gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated.
Length = 523
Score = 90.4 bits (225), Expect = 1e-20
Identities = 40/130 (30%), Positives = 60/130 (46%), Gaps = 18/130 (13%)
Query: 98 ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFT-EVEACLASHPDVSEAAV 156
DE+GY+ V R DM+ G V + EVE L +HP V+E AV
Sbjct: 403 GVMDEEGYITVVDRKKDMIKTGGEN--------------VASREVEEALYTHPAVAEVAV 448
Query: 157 VSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRS 216
+ P P E + + P GAT ++ +L R ++ F +P + LP+ S
Sbjct: 449 IGLPDPKWIEAVTAVVVPKAGATVTED---ELIAHCRARLAGFKVPKRVIFVDELPRNPS 505
Query: 217 GKIMRRVLRK 226
GKI++R LR+
Sbjct: 506 GKILKRELRE 515
>gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate
forming enzymes. This family contains benzoate CoA
ligase (BCL) and related ligases that catalyze the
acylation of benzoate derivatives, 2-aminobenzoate and
4-hydroxybenzoate. Aromatic compounds represent the
second most abundant class of organic carbon compounds
after carbohydrates. Xenobiotic aromatic compounds are
also a major class of man-made pollutants. Some bacteria
use benzoate as the sole source of carbon and energy
through benzoate degradation. Benzoate degradation
starts with its activation to benzoyl-CoA by benzoate
CoA ligase. The reaction catalyzed by benzoate CoA
ligase proceeds via a two-step process; the first
ATP-dependent step forms an acyl-AMP intermediate, and
the second step forms the acyl-CoA ester with release of
the AMP.
Length = 436
Score = 88.9 bits (221), Expect = 3e-20
Identities = 47/128 (36%), Positives = 63/128 (49%), Gaps = 13/128 (10%)
Query: 98 ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVV 157
RD DG+ GR DDM+ VSG + S EVEA L HP V+EAAVV
Sbjct: 322 FSRDADGWYRYQGRADDMIKVSG---------QWVSP----LEVEAALGEHPAVAEAAVV 368
Query: 158 SRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSG 217
+ P L F+ P G Q L + L + +RE++ P+ P I+ LP+T +G
Sbjct: 369 AVPDEDGLVRLKAFVVPRPGEAIQQLLERDLHRFLRERLAPYKCPRQIEFLDTLPRTATG 428
Query: 218 KIMRRVLR 225
K+ R LR
Sbjct: 429 KLQRFRLR 436
>gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase.
The members of this family are putative long-chain fatty
acyl-CoA synthetases, which catalyze the ATP-dependent
activation of fatty acids in a two-step reaction. The
carboxylate substrate first reacts with ATP to form an
acyl-adenylate intermediate, which then reacts with CoA
to produce an acyl-CoA ester. Fatty acyl-CoA synthetases
are responsible for fatty acid degradation as well as
physiological regulation of cellular functions via the
production of fatty acyl-CoA esters.
Length = 430
Score = 87.8 bits (218), Expect = 7e-20
Identities = 42/128 (32%), Positives = 62/128 (48%), Gaps = 16/128 (12%)
Query: 98 ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVF-TEVEACLASHPDVSEAAV 156
DE+GY + RV M+NVSG+ KV+ EVEA L HP V E V
Sbjct: 318 GYIDEEGYFFFLDRVKRMINVSGY--------------KVWPAEVEALLYQHPAVLEVCV 363
Query: 157 VSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRS 216
+ RP P +GE + F+ + + + RE++ + P +I+ LPKT S
Sbjct: 364 IGRPDPRRGEVVKAFVVLKPDYRGKVT-EEDIIEWCRERMAAYKYPRIIEFVDELPKTAS 422
Query: 217 GKIMRRVL 224
GK++ R+L
Sbjct: 423 GKVLWRLL 430
>gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated.
Length = 521
Score = 87.9 bits (219), Expect = 8e-20
Identities = 42/128 (32%), Positives = 62/128 (48%), Gaps = 16/128 (12%)
Query: 98 ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVV 157
DEDGYL++T R+ D++ G +Y E+E L HP V+E AV+
Sbjct: 403 GYIDEDGYLYITDRIKDVIISGG--ENIY-------PR----ELEDALYGHPAVAEVAVI 449
Query: 158 SRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSG 217
P GE + GAT + K+L+ +R ++ F +P I LP+T G
Sbjct: 450 GVPDEKWGERPVAVVVLKPGATLDA---KELRAFLRGRLAKFKLPKRIAFVDELPRTSVG 506
Query: 218 KIMRRVLR 225
KI++RVLR
Sbjct: 507 KILKRVLR 514
>gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase
(FACL) similar to Fum10p of Gibberella moniliformis.
FACL catalyzes the formation of fatty acyl-CoA in a
two-step reaction: the formation of a fatty acyl-AMP
molecule as an intermediate, followed by the formation
of a fatty acyl-CoA. This is a required step before free
fatty acids can participate in most catabolic and
anabolic reactions. Fum10p is a fatty acid CoA ligase
involved in the synthesis of fumonisin, a polyketide
mycotoxin, in Gibberella moniliformis.
Length = 345
Score = 86.5 bits (215), Expect = 9e-20
Identities = 40/130 (30%), Positives = 60/130 (46%), Gaps = 18/130 (13%)
Query: 98 ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVF-TEVEACLASHPDVSEAAV 156
DEDGYL++TGR+ +++N G K+ EVE L HP V+EA V
Sbjct: 233 GYLDEDGYLFLTGRIKELINRGGE--------------KISPREVEEVLLRHPAVAEAVV 278
Query: 157 VSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRS 216
P + GE + + + E +L+ R+++ F +P I LPK +
Sbjct: 279 FGVPDELYGEEVAAAVVLRADSKVTIE---ELRDFARKRLAAFKVPKKILFVDALPKGAT 335
Query: 217 GKIMRRVLRK 226
GKI RR L +
Sbjct: 336 GKIQRRKLAE 345
>gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated.
Length = 513
Score = 87.7 bits (218), Expect = 1e-19
Identities = 43/129 (33%), Positives = 62/129 (48%), Gaps = 16/129 (12%)
Query: 98 ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVV 157
R DE+GYL++ R DM V G F Y + EVE L HP V+EAAV+
Sbjct: 400 GRLDEEGYLYIVDRKKDMFIVGG-------FNVYPA------EVEEVLYEHPAVAEAAVI 446
Query: 158 SRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSG 217
P GE ++ GA +E +L RE + + +P I+ LPK +G
Sbjct: 447 GVPDERLGEVGKAYVVLKPGAELTEE---ELIAYCREHLAKYKVPRSIEFLDELPKNATG 503
Query: 218 KIMRRVLRK 226
K+++R LR+
Sbjct: 504 KVLKRALRE 512
>gnl|CDD|213311 cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL). ABCL catalyzes
the initial step in the 2-aminobenzoate aerobic
degradation pathway by activating 2-aminobenzoate to
2-aminobenzoyl-CoA. The reaction is carried out via a
two-step process; the first step is ATP-dependent and
forms a 2-aminobenzoyl-AMP intermediate, and the second
step forms the 2-aminobenzoyl-CoA ester and releases the
AMP. 2-Aminobenzoyl-CoA is further converted to
2-amino-5-oxo-cyclohex-1-ene-1-carbonyl-CoA catalyzed by
2-aminobenzoyl-CoA monooxygenase/reductase. ABCL has
been purified from cells aerobically grown with
2-aminobenzoate as sole carbon, energy, and nitrogen
source, and has been characterized as a monomer.
Length = 487
Score = 84.5 bits (209), Expect = 1e-18
Identities = 43/127 (33%), Positives = 62/127 (48%), Gaps = 13/127 (10%)
Query: 99 RRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVS 158
R+DEDGY R DDM+ +G+ + EVE L +HPDV+E AV+
Sbjct: 374 RQDEDGYFHYVARSDDMIVSAGYNIAA-------------PEVEDALLTHPDVAECAVIG 420
Query: 159 RPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSGK 218
P +G+ + I G + L ++L+ V+ I P+ P I LPKT++GK
Sbjct: 421 VPDEERGQIVCAHIVLRDGTKATELLAERLQDFVKAVIAPYKYPREINFVDALPKTQTGK 480
Query: 219 IMRRVLR 225
I R LR
Sbjct: 481 IQRFRLR 487
>gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase.
2,3-dihydroxybenzoate-AMP ligase activates
2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP
with the release of pyrophosphate. However, it can also
catalyze the ATP-PPi exchange for 2,3-DHB analogs, such
as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB
and 2,5-DHB, but with less efficiency. Proteins in this
family are the stand-alone adenylation components of
non-ribosomal peptide synthases (NRPSs) involved in the
biosynthesis of siderophores, which are low molecular
weight iron-chelating compounds synthesized by many
bacteria to aid in the acquisition of this vital trace
elements. In Escherichia coli, the
2,3-dihydroxybenzoate-AMP ligase is called EntE, the
adenylation component of the enterobactin NRPS system.
Length = 483
Score = 83.8 bits (208), Expect = 2e-18
Identities = 49/152 (32%), Positives = 72/152 (47%), Gaps = 25/152 (16%)
Query: 78 LHGHNNFSFTTNN----SDLLLSSARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCS 133
HN +FT + DL R D DGY V GR+ D +N G ++
Sbjct: 352 APEHNARAFTDDGFYRTGDL----VRIDADGYYRVVGRIKDQINRGGEKISP-------- 399
Query: 134 TAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVR 193
E+E L SHP V++AAVV P V GE + F+ P GGA + +L+ +R
Sbjct: 400 -----EEIENLLLSHPAVADAAVVGMPDEVLGERICAFVVPRGGAAPT---LAELRAFLR 451
Query: 194 EK-IGPFAMPDVIQHAPRLPKTRSGKIMRRVL 224
E+ + F +PD ++ LP T GK+ ++ L
Sbjct: 452 EQGLAKFKLPDRLEVVDSLPLTPVGKVDKKAL 483
>gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS). MCS catalyzes the
formation of malonyl-CoA in a two-step reaction
consisting of the adenylation of malonate with ATP,
followed by malonyl transfer from malonyl-AMP to CoA.
Malonic acid and its derivatives are the building blocks
of polyketides and malonyl-CoA serves as the substrate
of polyketide synthases. Malonyl-CoA synthetase has
broad substrate tolerance and can activate a variety of
malonyl acid derivatives. MCS may play an important role
in biosynthesis of polyketides, the important secondary
metabolites with therapeutic and agrochemical utility.
Length = 430
Score = 80.7 bits (200), Expect = 2e-17
Identities = 38/124 (30%), Positives = 53/124 (42%), Gaps = 15/124 (12%)
Query: 98 ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVV 157
DEDGY + GR D + SG V A E+E L HP V+E AV+
Sbjct: 322 GVVDEDGYYRILGRKSDDIIKSGGY-KVS--------AL---EIEEALLEHPGVAEVAVI 369
Query: 158 SRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSG 217
P P GE + + P GA L+ REK+ P+ +P + LP+ G
Sbjct: 370 GVPDPDWGEAVVAVVVPEAGAALTLAE---LRAWAREKLAPYKIPKRVIVVDELPRNAMG 426
Query: 218 KIMR 221
K+ +
Sbjct: 427 KVQK 430
>gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as
O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or
MenE). O-succinylbenzoic acid-CoA synthase catalyzes
the coenzyme A (CoA)- and ATP-dependent conversion of
o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The
reaction is the fourth step of the biosynthesis pathway
of menaquinone (vitamin K2). In certain bacteria,
menaquinone is used during fumarate reduction in
anaerobic respiration. In cyanobacteria, the product of
the menaquinone pathway is phylloquinone
(2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used
exclusively as an electron transfer cofactor in
Photosystem 1. In green sulfur bacteria and
heliobacteria, menaquinones are used as loosely bound
secondary electron acceptors in the photosynthetic
reaction center.
Length = 407
Score = 80.7 bits (200), Expect = 2e-17
Identities = 42/127 (33%), Positives = 61/127 (48%), Gaps = 19/127 (14%)
Query: 101 DEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVF-TEVEACLASHPDVSEAAVVSR 159
D +GYL+V GR DD++ +SG G ++ E+EA L HP V EAAVV
Sbjct: 299 DAEGYLYVLGRRDDLI-ISG--------GE-----NIYPEEIEAVLLQHPAVEEAAVVGV 344
Query: 160 PHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSGKI 219
P G+ F+ P V++L+ + +K+ + P P LP+ SGKI
Sbjct: 345 PDDEWGQRPVAFVVPNDDPVS----VEELQAFLADKLAKYKRPKRWYPLPELPRNASGKI 400
Query: 220 MRRVLRK 226
R LR+
Sbjct: 401 DRAALRQ 407
>gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid
CoA ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions. Members of this
family include DitJ from Pseudomonas and similar
proteins.
Length = 421
Score = 79.9 bits (198), Expect = 3e-17
Identities = 42/134 (31%), Positives = 63/134 (47%), Gaps = 26/134 (19%)
Query: 97 SARRDEDGYLWVTGRVDDML-----NVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDV 151
RRDEDG+L+ R D + N+S SY EVEA + +HP V
Sbjct: 309 RGRRDEDGFLYFVDRKKDAIRRRGENIS----------SY--------EVEAAILAHPAV 350
Query: 152 SEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRL 211
+EAAVV+ P + + + + G T + E L + R+++ F +P I+ L
Sbjct: 351 AEAAVVAVPSELGEDEVKAVVVLRPGETLDPE---ALLEFCRDRLPYFMVPRYIEFVDEL 407
Query: 212 PKTRSGKIMRRVLR 225
PKT + KI + LR
Sbjct: 408 PKTPTEKIQKAELR 421
>gnl|CDD|172019 PRK13382, PRK13382, acyl-CoA synthetase; Provisional.
Length = 537
Score = 78.6 bits (194), Expect = 1e-16
Identities = 46/126 (36%), Positives = 65/126 (51%), Gaps = 18/126 (14%)
Query: 101 DEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVF-TEVEACLASHPDVSEAAVVSR 159
DE+G L+V GR D+M+ VSG V+ EVE LA+HPDV+EAAV+
Sbjct: 427 DENGRLFVVGRDDEMI-VSG-------------GENVYPIEVEKTLATHPDVAEAAVIGV 472
Query: 160 PHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSGKI 219
G+ L F+ GA + LKQ VR+ + + +P I LP+ +GKI
Sbjct: 473 DDEQYGQRLAAFVVLKPGA---SATPETLKQHVRDNLANYKVPRDIVVLDELPRGATGKI 529
Query: 220 MRRVLR 225
+RR L+
Sbjct: 530 LRRELQ 535
>gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called
cyclohex-1-ene-1-carboxylate:CoA ligase).
Cyclohexanecarboxylate-CoA ligase activates the
aliphatic ring compound, cyclohexanecarboxylate, for
degradation. It catalyzes the synthesis of
cyclohexanecarboxylate-CoA thioesters in a two-step
reaction involving the formation of
cyclohexanecarboxylate-AMP anhydride, followed by the
nucleophilic substitution of AMP by CoA.
Length = 437
Score = 77.6 bits (192), Expect = 2e-16
Identities = 41/130 (31%), Positives = 61/130 (46%), Gaps = 17/130 (13%)
Query: 98 ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVV 157
R D DGYL +TGR D++ G ++ E+E L HP V+E AVV
Sbjct: 324 GRLDADGYLRITGRKKDIIIRGGENISA-------------REIEDLLLRHPAVAEVAVV 370
Query: 158 SRPHPVKGECLYCFITPAGGATFN-QELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRS 216
+ P GE + + PA GA+ EL + L Q + P+ ++ LP+T S
Sbjct: 371 AMPDERLGERVCAVVVPAPGASLTLAELTEHLAAQ---GLAKQKWPERLEVVDALPRTPS 427
Query: 217 GKIMRRVLRK 226
GK+ + LR+
Sbjct: 428 GKVQKFELRE 437
>gnl|CDD|233803 TIGR02262, benz_CoA_lig, benzoate-CoA ligase family. Characterized
members of this protein family include benzoate-CoA
ligase, 4-hydroxybenzoate-CoA ligase,
2-aminobenzoate-CoA ligase, etc. Members are related to
fatty acid and acetate CoA ligases.
Length = 508
Score = 78.0 bits (192), Expect = 2e-16
Identities = 43/127 (33%), Positives = 60/127 (47%), Gaps = 13/127 (10%)
Query: 100 RDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSR 159
R++DG GR DDML VSG ++ + E+E+ L HP V EAAVV
Sbjct: 394 RNDDGSYTYAGRTDDMLKVSGIYVSPF-------------EIESALIQHPAVLEAAVVGV 440
Query: 160 PHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSGKI 219
FI G + L +LK+ V++++ P+ P I LPKT +GKI
Sbjct: 441 EDEDGLIKPKAFIVLRPGQDIDTALETELKEHVKDRLAPYKYPRWIVFVDDLPKTATGKI 500
Query: 220 MRRVLRK 226
R LR+
Sbjct: 501 QRFKLRE 507
>gnl|CDD|236097 PRK07788, PRK07788, acyl-CoA synthetase; Validated.
Length = 549
Score = 77.7 bits (192), Expect = 2e-16
Identities = 58/158 (36%), Positives = 79/158 (50%), Gaps = 30/158 (18%)
Query: 81 HNNFSFT--TNNS-----DLLLSSARR---DEDGYLWVTGRVDDMLNVSGHLMTVYFFGS 130
N F F T+ D LLSS DEDG L+V GR DDM+ VSG G
Sbjct: 408 GNGFPFEGYTDGRDKQIIDGLLSSGDVGYFDEDGLLFVDGRDDDMI-VSG--------GE 458
Query: 131 YCSTAKVF-TEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLK 189
VF EVE LA HPDV EAAV+ G+ L F+ A GA +++ +K
Sbjct: 459 -----NVFPAEVEDLLAGHPDVVEAAVIGVDDEEFGQRLRAFVVKAPGAALDED---AIK 510
Query: 190 QQVREKIGPFAMP-DVIQHAPRLPKTRSGKIMRRVLRK 226
VR+ + + +P DV+ LP+ +GK+++R LR+
Sbjct: 511 DYVRDNLARYKVPRDVV-FLDELPRNPTGKVLKRELRE 547
>gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated.
Length = 488
Score = 77.5 bits (191), Expect = 3e-16
Identities = 44/136 (32%), Positives = 61/136 (44%), Gaps = 16/136 (11%)
Query: 98 ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVV 157
ARRD DG+ WV R DM G VY E+EA LA HP + E AVV
Sbjct: 369 ARRDADGFFWVVDRKKDMFISGGE--NVYP-----------AEIEAVLADHPGIRECAVV 415
Query: 158 SRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSG 217
GE Y I PA GA + E + + + ++ + +P ++ LP+T SG
Sbjct: 416 GMADAQWGEVGYLAIVPADGAPLDLERI---RSHLSTRLAKYKVPKHLRLVDALPRTASG 472
Query: 218 KIMRRVLRKVAVNDRE 233
K+ + LR R+
Sbjct: 473 KLQKARLRDALAAGRK 488
>gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated.
Length = 524
Score = 77.3 bits (191), Expect = 3e-16
Identities = 39/128 (30%), Positives = 58/128 (45%), Gaps = 16/128 (12%)
Query: 98 ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVV 157
AR DEDG+ ++ R DM+ V+G F + EVE LA HP V++ AV+
Sbjct: 401 AREDEDGFYYIVDRKKDMI-VTGG------FNVFPR------EVEDVLAEHPAVAQVAVI 447
Query: 158 SRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSG 217
P GE + + GA + +L+ V+E+ G P + LP T G
Sbjct: 448 GVPDEKWGEAVTAVVVLRPGAAVDAA---ELQAHVKERKGSVHAPKQVDFVDSLPLTALG 504
Query: 218 KIMRRVLR 225
K ++ LR
Sbjct: 505 KPDKKALR 512
>gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide
synthetases (NRPS). The adenylation (A) domain of NRPS
recognizes a specific amino acid or hydroxy acid and
activates it as an (amino) acyl adenylate by hydrolysis
of ATP. The activated acyl moiety then forms a thioester
bond to the enzyme-bound cofactor phosphopantetheine of
a peptidyl carrier protein domain. NRPSs are large
multifunctional enzymes which synthesize many
therapeutically useful peptides in bacteria and fungi
via a template-directed, nucleic acid independent
nonribosomal mechanism. These natural products include
antibiotics, immunosuppressants, plant and animal
toxins, and enzyme inhibitors. NRPS has a distinct
modular structure in which each module is responsible
for the recognition, activation, and in some cases,
modification of a single amino acid residue of the final
peptide product. The modules can be subdivided into
domains that catalyze specific biochemical reactions.
Length = 445
Score = 75.6 bits (187), Expect = 1e-15
Identities = 38/130 (29%), Positives = 58/130 (44%), Gaps = 22/130 (16%)
Query: 98 ARRDEDGYLWVTGRVDDMLNVSGH---LMTVYFFGSYCSTAKVFTEVEACLASHPDVSEA 154
AR DG L GR DD + + G+ L E+EA L +HP V EA
Sbjct: 335 ARWLPDGNLEFLGRADDQVKIRGYRIELG----------------EIEAALLAHPGVREA 378
Query: 155 AVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKT 214
VV+R + L ++ PA GA + +L+ + E++ + +P LP T
Sbjct: 379 VVVAREDGAGEKRLVAYVVPAAGAELD---AAELRAFLAERLPDYMVPSAFVVLDALPLT 435
Query: 215 RSGKIMRRVL 224
+GK+ R+ L
Sbjct: 436 PNGKVDRKAL 445
>gnl|CDD|236215 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated.
Length = 502
Score = 75.3 bits (186), Expect = 1e-15
Identities = 41/125 (32%), Positives = 62/125 (49%), Gaps = 13/125 (10%)
Query: 101 DEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRP 160
DEDGYL++T R DM+ +SG + +Y E+E L +HP V++ AV P
Sbjct: 380 DEDGYLYLTDRKSDMI-ISGGV-NIYP-----------QEIENLLVTHPKVADVAVFGVP 426
Query: 161 HPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSGKIM 220
GE + + PA GA L +L +R ++ + P I LP+T +GK+
Sbjct: 427 DEEMGERVKAVVQPADGADAGDALAAELIAWLRGRLAHYKCPRSIDFEDELPRTPTGKLY 486
Query: 221 RRVLR 225
+R LR
Sbjct: 487 KRRLR 491
>gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated.
Length = 632
Score = 75.4 bits (186), Expect = 1e-15
Identities = 46/156 (29%), Positives = 65/156 (41%), Gaps = 25/156 (16%)
Query: 81 HNNFSFTT----NNSDLLLSSARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAK 136
HN + N DL R D DGY W+TGR D++ GH +
Sbjct: 436 HNKGLWLEDGWLNTGDL----GRIDADGYFWLTGRAKDLIIRGGHNIDP----------- 480
Query: 137 VFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFN-QELVKQLKQQVREK 195
+E L HP V+ AA V RP GE ++ GA+ EL+ + + E
Sbjct: 481 --AAIEEALLRHPAVALAAAVGRPDAHAGELPVAYVQLKPGASATEAELLAFARDHIAE- 537
Query: 196 IGPFAMPDVIQHAPRLPKTRSGKIMRRVLRKVAVND 231
A+P ++ LPKT GKI + LR+ A+
Sbjct: 538 --RAAVPKHVRILDALPKTAVGKIFKPALRRDAIRR 571
>gnl|CDD|223952 COG1021, EntE, Peptide arylation enzymes [Secondary metabolites
biosynthesis, transport, and catabolism].
Length = 542
Score = 75.2 bits (185), Expect = 2e-15
Identities = 48/150 (32%), Positives = 69/150 (46%), Gaps = 24/150 (16%)
Query: 81 HNNFSFTTN----NSDLLLSSARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAK 136
HN +F + + DL+ RRD DGYL V GRV D +N G +
Sbjct: 405 HNARAFDADGFYRSGDLV----RRDPDGYLVVEGRVKDQINRGGEKIAA----------- 449
Query: 137 VFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKI 196
EVE L HP V +AA+V+ P + GE FI +L + L+++ +
Sbjct: 450 --EEVENLLLRHPAVHDAALVAMPDELLGEKSCAFIVVKEPPLRAAQLRRFLRER---GL 504
Query: 197 GPFAMPDVIQHAPRLPKTRSGKIMRRVLRK 226
F +PD I+ LP T GKI ++ LR+
Sbjct: 505 AAFKLPDRIEFVDSLPLTAVGKIDKKALRR 534
>gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated.
Length = 546
Score = 75.0 bits (185), Expect = 2e-15
Identities = 42/131 (32%), Positives = 64/131 (48%), Gaps = 22/131 (16%)
Query: 98 ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVF-TEVEACLASHPDVSEAAV 156
R DE+GY ++T R+ M+N SG KV+ EVE L HP + EA V
Sbjct: 424 GRMDEEGYFFITDRLKRMINASGF--------------KVWPAEVENLLYKHPAIQEACV 469
Query: 157 VSRPHPVKGECLYCFITP---AGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPK 213
++ P P +GE + + A G T +E++ RE + + P +++ LPK
Sbjct: 470 IATPDPRRGETVKAVVVLRPEARGKTTEEEII----AWAREHMAAYKYPRIVEFVDSLPK 525
Query: 214 TRSGKIMRRVL 224
+ SGKI+ R L
Sbjct: 526 SGSGKILWRQL 536
>gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated.
Length = 542
Score = 74.8 bits (184), Expect = 2e-15
Identities = 41/145 (28%), Positives = 66/145 (45%), Gaps = 21/145 (14%)
Query: 99 RRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGS--YCSTAKVFTEVEACLASHPDVSEAAV 156
R+DE+GY+WV R DM+ +SG G YC+ EVE LASHPD+ E AV
Sbjct: 408 RQDEEGYVWVVDRKKDMI-ISG--------GENIYCA------EVENVLASHPDIVEVAV 452
Query: 157 VSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRS 216
+ R GE ++ L + + +++ + P ++ LP+ +
Sbjct: 453 IGRADEKWGEVPVAVAAVRNDD--AALTLEDLAEFLTDRLARYKHPKALEIVDALPRNPA 510
Query: 217 GKIMRRVLRKV--AVNDREVGDKST 239
GK+++ LR+ A + E S
Sbjct: 511 GKVLKTELRERYGACVNVERRSASA 535
>gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to
LC-FACS from Thermus thermophiles. This family includes
fatty acyl-CoA synthetases that can activate
medium-chain to long-chain fatty acids. They catalyze
the ATP-dependent acylation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. The fatty
acyl-CoA synthetases are responsible for fatty acid
degradation as well as physiological regulation of
cellular functions via the production of fatty acyl-CoA
esters. The fatty acyl-CoA synthetase from Thermus
thermophiles in this family was shown catalyzing the
long-chain fatty acid, myristoyl acid, while another
member in this family, the AlkK protein identified from
Pseudomonas oleovorans, targets medium chain fatty
acids. This family also includes uncharacterized FACS
proteins.
Length = 517
Score = 73.8 bits (182), Expect = 5e-15
Identities = 42/129 (32%), Positives = 65/129 (50%), Gaps = 16/129 (12%)
Query: 98 ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVV 157
A DEDGY+ +T R D++ SG G + S+ E+E L +HP V+EAAVV
Sbjct: 405 AVIDEDGYIQITDRAKDVIK-SG--------GEWISS----VELENALMAHPAVAEAAVV 451
Query: 158 SRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSG 217
PH GE + GA +E +L + + +K+ + +PD + +PKT G
Sbjct: 452 GVPHEKWGERPLAVVVLKPGAKVTEE---ELLEHLAKKVAKWWLPDRVVFVDEIPKTSVG 508
Query: 218 KIMRRVLRK 226
K ++ LR+
Sbjct: 509 KFDKKALRE 517
>gnl|CDD|221971 pfam13193, DUF4009, Domain of unknown function (DUF4009). This is
a small domain that is found C terminal to pfam00501. It
has a central beta sheet core that is flanked by alpha
helices.
Length = 43
Score = 65.9 bits (162), Expect = 1e-14
Identities = 22/44 (50%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 199 FAMPDVIQHAPRLPKTRSGKIMRRVLRKVAVNDREVGDKSTLAD 242
+A+P ++ LPKTRSGKI+RR+LR +A ++GD STL D
Sbjct: 1 YAVPREVEFVDELPKTRSGKILRRLLRAIA-LGEDLGDLSTLED 43
>gnl|CDD|168170 PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated.
Length = 562
Score = 71.3 bits (175), Expect = 3e-14
Identities = 39/124 (31%), Positives = 59/124 (47%), Gaps = 16/124 (12%)
Query: 102 EDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPH 161
EDGY+ + R DM+ VSG F Y + E+E LA+ P V + A + P
Sbjct: 445 EDGYMRIVDRKKDMILVSG-------FNVYPN------ELEDVLAALPGVLQCAAIGVPD 491
Query: 162 PVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSGKIMR 221
GE + F+ G T +E Q+ + +R + + +P ++ LP T GKI+R
Sbjct: 492 EKSGEAIKVFVVVKPGETLTKE---QVMEHMRANLTGYKVPKAVEFRDELPTTNVGKILR 548
Query: 222 RVLR 225
R LR
Sbjct: 549 RELR 552
>gnl|CDD|236071 PRK07638, PRK07638, acyl-CoA synthetase; Validated.
Length = 487
Score = 71.3 bits (175), Expect = 4e-14
Identities = 36/131 (27%), Positives = 56/131 (42%), Gaps = 22/131 (16%)
Query: 101 DEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTE-VEACLASHPDVSEAAVVSR 159
DE+G++++ GR +M+ + G + +F E +E+ L HP V E V+
Sbjct: 372 DEEGFIYIVGREKNMI-LFGGI-------------NIFPEEIESVLHEHPAVDEIVVIGV 417
Query: 160 PHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSGKI 219
P GE I G AT +QLK +++ F +P +P T SGKI
Sbjct: 418 PDSYWGEKPVAIIK--GSAT-----KQQLKSFCLQRLSSFKIPKEWHFVDEIPYTNSGKI 470
Query: 220 MRRVLRKVAVN 230
R + N
Sbjct: 471 ARMEAKSWIEN 481
>gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase;
Provisional.
Length = 483
Score = 70.8 bits (174), Expect = 5e-14
Identities = 35/127 (27%), Positives = 57/127 (44%), Gaps = 20/127 (15%)
Query: 101 DEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVF-TEVEACLASHPDVSEAAVVSR 159
DE+G+L+V R D++ G ++ E+E L SHP V+EA VV
Sbjct: 371 DEEGFLYVLDRRSDLIISGGE--------------NIYPAEIEEVLLSHPGVAEAGVVGV 416
Query: 160 PHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSGKI 219
P G+ F+ +G T + L+ EK+ + +P LP+ SGK+
Sbjct: 417 PDDKWGQVPVAFVVKSGEVTEEE-----LRHFCEEKLAKYKVPKRFYFVEELPRNASGKL 471
Query: 220 MRRVLRK 226
+R L++
Sbjct: 472 LRHELKQ 478
>gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase
A-associated. This group of proteins contains an
AMP-binding domain (pfam00501) associated with acyl
CoA-ligases. These proteins are generally found in
genomes containing the exosortase/PEP-CTERM protein
expoert system , specifically the type 1 variant of this
system described by the Genome Property GenProp0652.
When found in this context they are invariably present
next to a decarboxylase enzyme. A number of sequences
from Burkholderia species also hit this model, but the
genomic context is obviously different. The hypothesis
of a constant substrate for this family is only strong
where the exosortase context is present.
Length = 517
Score = 70.2 bits (172), Expect = 8e-14
Identities = 38/128 (29%), Positives = 62/128 (48%), Gaps = 16/128 (12%)
Query: 99 RRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVS 158
RRDE+G+L+ GR D+M+ SG+ ++ TEVE + V+EA
Sbjct: 405 RRDEEGFLYFVGRRDEMIKTSGYRVSP-------------TEVEEVAYATGLVAEAVAFG 451
Query: 159 RPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSGK 218
P P G+ + +TP GG ++ L + R ++ + +P +I LP+ +GK
Sbjct: 452 VPDPTLGQAIVLVVTPPGGEELDR---AALLAECRARLPNYMVPALIHVRQALPRNANGK 508
Query: 219 IMRRVLRK 226
I R+ L K
Sbjct: 509 IDRKALAK 516
>gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated.
Length = 567
Score = 70.1 bits (172), Expect = 1e-13
Identities = 41/119 (34%), Positives = 57/119 (47%), Gaps = 17/119 (14%)
Query: 101 DEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRP 160
DE G+L GR +ML V+G M+V+ +EVEA L HP V +AVV RP
Sbjct: 453 DEQGFLHYLGRRKEMLKVNG--MSVFP-----------SEVEALLGQHPAVLGSAVVGRP 499
Query: 161 HPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSGKI 219
P KG+ F+ GA L+ RE + + +P I+ LP T +GK+
Sbjct: 500 DPDKGQVPVAFVQLKPGADLTAA---ALQAWCRENMAVYKVP-EIRIVDALPMTATGKV 554
>gnl|CDD|236359 PRK08974, PRK08974, long-chain-fatty-acid--CoA ligase; Validated.
Length = 560
Score = 69.7 bits (171), Expect = 1e-13
Identities = 39/125 (31%), Positives = 58/125 (46%), Gaps = 17/125 (13%)
Query: 101 DEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRP 160
DE+G+L + R DM+ VSG F Y E+E + HP V E A V P
Sbjct: 443 DEEGFLRIVDRKKDMILVSG-------FNVYP------NEIEDVVMLHPKVLEVAAVGVP 489
Query: 161 HPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSGKIM 220
V GE + F+ + +EL+ R + + +P +++ LPK+ GKI+
Sbjct: 490 SEVSGEAVKIFVVKKDPSLTEEELIT----HCRRHLTGYKVPKLVEFRDELPKSNVGKIL 545
Query: 221 RRVLR 225
RR LR
Sbjct: 546 RRELR 550
>gnl|CDD|213309 cd05944, FACL_like_4, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 359
Score = 68.9 bits (169), Expect = 2e-13
Identities = 49/158 (31%), Positives = 63/158 (39%), Gaps = 33/158 (20%)
Query: 81 HNNFSFTT----NNSDLLLSSARRDEDGYLWVTGRVDDMLNVSGH----LMTVYFFGSYC 132
HN + N DL R D DGYLW+TGR D++ GH M
Sbjct: 225 HNAGARLEDGWLNTGDL----GRIDADGYLWLTGRAKDLIIRGGHNIDPQM--------- 271
Query: 133 STAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQV 192
+E L HP V+ AA V RP GE ++ GAT + +L V
Sbjct: 272 --------IEEALLRHPAVALAAAVGRPDAYAGELPVAYVQLKPGATVTEG---ELLAFV 320
Query: 193 REKIG-PFAMPDVIQHAPRLPKTRSGKIMRRVLRKVAV 229
+ +I A+P I LP T GKI + LR A
Sbjct: 321 KARIPERAAVPKAIYIIDALPLTAVGKIFKPRLRCDAA 358
>gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated.
Length = 496
Score = 69.1 bits (169), Expect = 2e-13
Identities = 36/127 (28%), Positives = 54/127 (42%), Gaps = 16/127 (12%)
Query: 98 ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVV 157
AR DEDG++++ GR +M+ G +Y EVE + DV E AVV
Sbjct: 379 ARVDEDGFVYIVGRKKEMIISGGE--NIYPL-----------EVEQVINKLSDVYEVAVV 425
Query: 158 SRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSG 217
R H GE FI + ++ + + R + + +P I LPK +G
Sbjct: 426 GRQHVKWGEIPIAFIVKKSSSVLIEK---DVIEHCRLFLAKYKIPKEIVFLKELPKNATG 482
Query: 218 KIMRRVL 224
KI + L
Sbjct: 483 KIQKAQL 489
>gnl|CDD|235134 PRK03584, PRK03584, acetoacetyl-CoA synthetase; Provisional.
Length = 655
Score = 68.3 bits (168), Expect = 3e-13
Identities = 41/162 (25%), Positives = 74/162 (45%), Gaps = 20/162 (12%)
Query: 98 ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVV 157
E G + + GR D LN G + G TA+++ +VEA P+V ++ V+
Sbjct: 506 IEITEHGGVVIYGRSDATLNRGGVRI-----G----TAEIYRQVEAL----PEVLDSLVI 552
Query: 158 SRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSG 217
+ P + F+ A G T + L +++ +R + P +PD I P +P+T SG
Sbjct: 553 GQEWPDGDVRMPLFVVLAEGVTLDDALRARIRTTIRTNLSPRHVPDKIIAVPDIPRTLSG 612
Query: 218 KIM----RRVLRKVAVNDREVGDKSTLADEDVVDELFQNRPE 255
K + +++L V ++ LA+ + +D F + E
Sbjct: 613 KKVELPVKKLLHGRPVKK--AVNRDALANPEALDW-FADLAE 651
>gnl|CDD|235625 PRK05852, PRK05852, acyl-CoA synthetase; Validated.
Length = 534
Score = 67.6 bits (165), Expect = 6e-13
Identities = 41/123 (33%), Positives = 55/123 (44%), Gaps = 18/123 (14%)
Query: 101 DEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTE-VEACLASHPDVSEAAVVSR 159
G L + GR+ +++N G K+ E VE LASHP+V EAAV
Sbjct: 419 SAAGDLSIRGRIKELINRGGE--------------KISPERVEGVLASHPNVMEAAVFGV 464
Query: 160 PHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSGKI 219
P + GE + I P A E +L Q RE++ F +P Q A LP T G +
Sbjct: 465 PDQLYGEAVAAVIVPRESAPPTAE---ELVQFCRERLAAFEIPASFQEASGLPHTAKGSL 521
Query: 220 MRR 222
RR
Sbjct: 522 DRR 524
>gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar
to LC-FACS from Thermus thermophiles and Arabidopsis.
This family includes fatty acyl-CoA synthetases that can
activate medium to long-chain fatty acids. These enzymes
catalyze the ATP-dependent acylation of fatty acids in a
two-step reaction. The carboxylate substrate first
reacts with ATP to form an acyl-adenylate intermediate,
which then reacts with CoA to produce an acyl-CoA ester.
Fatty acyl-CoA synthetases are responsible for fatty
acid degradation as well as physiological regulation of
cellular functions via the production of fatty acyl-CoA
esters. The fatty acyl-CoA synthetase from Thermus
thermophiles in this family has been shown to catalyze
the long-chain fatty acid, myristoyl acid. Also included
in this family are acyl activating enzymes from
Arabidopsis, which contains a large number of proteins
from this family with up to 63 different genes, many of
which are uncharacterized.
Length = 520
Score = 66.9 bits (164), Expect = 1e-12
Identities = 36/87 (41%), Positives = 49/87 (56%), Gaps = 4/87 (4%)
Query: 140 EVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPF 199
EVE L HP V EAAVV+RP GE F+ GA+ +E +L + REK+ F
Sbjct: 438 EVEGVLYKHPAVLEAAVVARPDEKWGETPCAFVVLKPGASVTEE---ELIEYCREKLAHF 494
Query: 200 AMPDVIQHAPRLPKTRSGKIMRRVLRK 226
+P ++ LPKT +GKI + VLR+
Sbjct: 495 KVPKTVEFVE-LPKTATGKIQKFVLRE 520
>gnl|CDD|180666 PRK06710, PRK06710, long-chain-fatty-acid--CoA ligase; Validated.
Length = 563
Score = 66.6 bits (162), Expect = 2e-12
Identities = 42/124 (33%), Positives = 58/124 (46%), Gaps = 16/124 (12%)
Query: 101 DEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRP 160
DEDG+ +V R DM+ SG F Y EVE L H V E + P
Sbjct: 442 DEDGFFYVKDRKKDMIVASG-------FNVYPR------EVEEVLYEHEKVQEVVTIGVP 488
Query: 161 HPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSGKIM 220
P +GE + F+ G ++E +L Q R+ + + +P V + LPKT GKI+
Sbjct: 489 DPYRGETVKAFVVLKEGTECSEE---ELNQFARKYLAAYKVPKVYEFRDELPKTTVGKIL 545
Query: 221 RRVL 224
RRVL
Sbjct: 546 RRVL 549
>gnl|CDD|236120 PRK07867, PRK07867, acyl-CoA synthetase; Validated.
Length = 529
Score = 66.6 bits (163), Expect = 2e-12
Identities = 40/135 (29%), Positives = 63/135 (46%), Gaps = 18/135 (13%)
Query: 98 ARRDEDGYLWVTGRVDDMLNVSG-HLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAV 156
A RD DGY + GR+ D + V G +L T +E L +PD +E AV
Sbjct: 389 AYRDADGYAYFAGRLGDWMRVDGENLGT--------------APIERILLRYPDATEVAV 434
Query: 157 VSRPHPVKGECLYCFITPAGGATFNQE-LVKQLKQQVREKIGPFAMPDVIQHAPRLPKTR 215
+ P PV G+ + + A GA F+ + + L Q +GP P ++ LP+T
Sbjct: 435 YAVPDPVVGDQVMAALVLAPGAKFDPDAFAEFLAAQ--PDLGPKQWPSYVRVCAELPRTA 492
Query: 216 SGKIMRRVLRKVAVN 230
+ K+++R L V+
Sbjct: 493 TFKVLKRQLSAEGVD 507
>gnl|CDD|213308 cd05943, AACS, Acetoacetyl-CoA synthetase (acetoacetate-CoA ligase,
AACS). AACS is a cytosolic ligase that specifically
activates acetoacetate to its coenzyme A ester by a
two-step reaction. Acetoacetate first reacts with ATP to
form an acyl-adenylate intermediate, which then reacts
with CoA to produce an acyl-CoA ester. This is the first
step of the mevalonate pathway of isoprenoid
biosynthesis via isopentenyl diphosphate. Isoprenoids
are a large class of compounds found in all living
organisms. AACS is widely distributed in bacteria,
archaea and eukaryotes. In bacteria, AACS is known to
exhibit an important role in the metabolism of
poly-b-hydroxybutyrate, an intracellular reserve of
organic carbon and chemical energy by some
microorganisms. In mammals, AACS influences the rate of
ketone body utilization for the formation of
physiologically important fatty acids and cholesterol.
Length = 616
Score = 66.1 bits (162), Expect = 2e-12
Identities = 38/150 (25%), Positives = 69/150 (46%), Gaps = 14/150 (9%)
Query: 98 ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVV 157
+ G + + GR D LN G V TA+++ VE P+V ++ VV
Sbjct: 479 IKITPHGGVIIYGRSDATLNPGG----VRI-----GTAEIYRVVEKI----PEVEDSLVV 525
Query: 158 SRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSG 217
+ E + F+ G T + LVK+++ +R + P +P I P +P T SG
Sbjct: 526 GQEVDDGDERMPLFVKLREGVTLDDALVKRIRSAIRAALSPRHVPAEIIAVPDIPYTLSG 585
Query: 218 KIMRRVLRKVAVNDREVGDKSTLADEDVVD 247
K + ++K+ + + V + + LA+ + +D
Sbjct: 586 KKVEVAVKKI-LLGKPVENVAALANPECLD 614
>gnl|CDD|233807 TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP ligase. Proteins
in this family belong to the AMP-binding enzyme family
(pfam00501). Members activate 2,3-dihydroxybenzoate
(DHB) by ligation of AMP from ATP with the release of
pyrophosphate; many are involved in synthesis of
siderophores such as enterobactin, vibriobactin,
vulnibactin, etc. The most closely related proteine
believed to differ in function activates salicylate
rather than DHB [Transport and binding proteins, Cations
and iron carrying compounds].
Length = 526
Score = 66.0 bits (161), Expect = 3e-12
Identities = 42/149 (28%), Positives = 65/149 (43%), Gaps = 24/149 (16%)
Query: 81 HNNFSFTTNNSDLLLSSARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTE 140
HN +F R +GY+ V GR D +N G K+ E
Sbjct: 398 HNAAAFDAEGFYYTGDLVRLTPEGYIVVVGRAKDQINRGGE--------------KIAAE 443
Query: 141 -VEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVK--QLKQQVREK-I 196
+E L +HP V +AA+VS P + GE FI +K QL++ +RE+ +
Sbjct: 444 EIENLLLAHPAVHDAALVSMPDELLGEKSCAFIVVR------DPALKAAQLRRFLRERGL 497
Query: 197 GPFAMPDVIQHAPRLPKTRSGKIMRRVLR 225
+ +PD ++ LP T GK+ ++ LR
Sbjct: 498 AEYKLPDRVEFVDSLPLTAVGKVDKKALR 526
>gnl|CDD|236169 PRK08162, PRK08162, acyl-CoA synthetase; Validated.
Length = 545
Score = 65.7 bits (161), Expect = 3e-12
Identities = 43/136 (31%), Positives = 65/136 (47%), Gaps = 17/136 (12%)
Query: 101 DEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRP 160
DGY+ + R D++ +SG G S+ EVE L HP V AAVV++P
Sbjct: 427 HPDGYIKIKDRSKDII-ISG--------GENISS----IEVEDVLYRHPAVLVAAVVAKP 473
Query: 161 HPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSGKIM 220
P GE F+ GA+ +E ++ RE + F +P + LPKT +GKI
Sbjct: 474 DPKWGEVPCAFVELKDGASATEE---EIIAHCREHLAGFKVPKAVVFGE-LPKTSTGKIQ 529
Query: 221 RRVLRKVAVNDREVGD 236
+ VLR+ A + + +
Sbjct: 530 KFVLREQAKSLKAIDL 545
>gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA).
DltA belongs to the class I AMP-forming adenylation
domain superfamily, which also includes acetyl-CoA
synthetase, luciferase, and the adenylation domains of
non-ribosomal synthetases. It catalyzes the two-step
activation reaction of D-alanine: the formation of a
substrate-AMP molecule as an intermediate, and then the
transfer of the amino acid adenylate to teichoic acid in
the biosynthesis of lipoteichoic acid (LTA) and wall
teichoic acid (WTA) in gram-positive bacteria.
Length = 447
Score = 65.3 bits (160), Expect = 3e-12
Identities = 34/127 (26%), Positives = 57/127 (44%), Gaps = 17/127 (13%)
Query: 98 ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVV 157
++DG L GR D + + G+ + + E+EA L + P V EA V+
Sbjct: 338 VYLEDDGLLVYLGRKDFQIKLHGYRIEL-------------EEIEAALRALPGVEEAVVL 384
Query: 158 SRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSG 217
P K L F+ GA K LK+++++++ P+ +P + LP +G
Sbjct: 385 PVPKGEKVVRLVAFVVGKEGA----LDTKALKKELKKRLPPYMIPRRFVYLDSLPLNANG 440
Query: 218 KIMRRVL 224
KI R+ L
Sbjct: 441 KIDRKAL 447
>gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal
peptide synthetases (NRPS), including Bacillus subtilis
termination module Surfactin (SrfA-C). The adenylation
(A) domain of NRPS recognizes a specific amino acid or
hydroxy acid and activates it as an (amino) acyl
adenylate by hydrolysis of ATP. The activated acyl
moiety then forms a thioester to the enzyme-bound
cofactor phosphopantetheine of a peptidyl carrier
protein domain. NRPSs are large multifunctional enzymes
which synthesize many therapeutically useful peptides in
bacteria and fungi via a template-directed, nucleic acid
independent nonribosomal mechanism. These natural
products include antibiotics, immunosuppressants, plant
and animal toxins, and enzyme inhibitors. NRPS has a
distinct modular structure in which each module is
responsible for the recognition, activation, and, in
some cases, modification of a single amino acid residue
of the final peptide product. The modules can be
subdivided into domains that catalyze specific
biochemical reactions. This family includes the
adenylation domain of the Bacillus subtilis termination
module (Surfactin domain, SrfA-C) which recognizes a
specific amino acid building block, which is then
activated and transferred to the terminal thiol of the
4'-phosphopantetheine (Ppan) arm of the downstream
peptidyl carrier protein (PCP) domain.
Length = 474
Score = 65.3 bits (160), Expect = 4e-12
Identities = 32/127 (25%), Positives = 52/127 (40%), Gaps = 18/127 (14%)
Query: 98 ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVV 157
AR DG + GR+D + + G + + E+E L HP V EAAV+
Sbjct: 366 ARWRPDGNIEFLGRIDRQVKIRGFRIEL-------------GEIEQALLQHPGVREAAVL 412
Query: 158 SRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSG 217
R + L ++ G +L+ + E++ + +P LP T +G
Sbjct: 413 VREDAAGDKRLVAYVVARGALD-----AAELRAHLAERLPAYMVPAAFVVLDELPLTANG 467
Query: 218 KIMRRVL 224
K+ RR L
Sbjct: 468 KVDRRAL 474
>gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme.
Length = 412
Score = 64.7 bits (158), Expect = 6e-12
Identities = 23/59 (38%), Positives = 28/59 (47%), Gaps = 13/59 (22%)
Query: 98 ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAV 156
R DEDGYL + GR DD + + G E+EA L HP V+EAAV
Sbjct: 367 GRWDEDGYLEILGRKDDQVKIRGE---------RIEPG----EIEAVLLEHPGVAEAAV 412
>gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting
insects and 4-Coumarate-CoA Ligase (4CL). This family
contains two functionally unique groups of proteins; one
group is insect firefly luciferases and the other is
plant 4-coumarate:coenzyme A ligases. However, they
share significant sequence similarity in spite of their
functional diversity. Luciferase catalyzes the
production of light in the presence of MgATP, molecular
oxygen, and luciferin. In the first step, luciferin is
activated by acylation of its carboxylate group with
ATP, resulting in an enzyme-bound luciferyl adenylate.
In the second step, luciferyl adenylate reacts with
molecular oxygen, producing an enzyme-bound excited
state product (Luc=O*) and releasing AMP. This
excited-state product then decays to the ground state
(Luc=O), emitting a quantum of visible light.
4-coumarate:coenzyme A ligase is a key enzyme in the
phenylpropanoid metabolic pathway for monolignol and
flavonoid biosynthesis. It catalyzes the synthesis of
hydroxycinnamate-CoA thioesters in a two-step reaction,
involving the formation of hydroxycinnamate-AMP
anhydride and then the nucleophilic substitution of AMP
by CoA. The phenylpropanoid pathway is one of the most
important secondary metabolism pathways in plants and
hydroxycinnamate-CoA thioesters are the precursors of
lignin and other important phenylpropanoids.
Length = 487
Score = 63.4 bits (155), Expect = 1e-11
Identities = 32/131 (24%), Positives = 52/131 (39%), Gaps = 31/131 (23%)
Query: 98 ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVF-TEVEACLASHPDVSEAAV 156
DEDG ++ R +++ G+ +V E+EA L HP V++AAV
Sbjct: 380 GYFDEDGNFYIVDRKKELIKYKGY--------------QVPPAELEAVLLEHPKVADAAV 425
Query: 157 VSRPHPVKGECLYCFITPA-GGATFNQELVKQLKQQVREKIGPFAMPDVIQH------AP 209
+ P V GE ++ G QE+ + ++V Q
Sbjct: 426 IGIPDEVAGELPRAYVVLKPGSKLTEQEVKDYVAKKV---------AKYKQLRGGVVFVD 476
Query: 210 RLPKTRSGKIM 220
+PK+ SGKI+
Sbjct: 477 EIPKSPSGKIL 487
>gnl|CDD|213323 cd12115, A_NRPS_Sfm_like, The adenylation domain of nonribosomal
peptide synthetases (NRPS), including Saframycin A gene
cluster from Streptomyces lavendulae. The adenylation
(A) domain of NRPS recognizes a specific amino acid or
hydroxy acid and activates it as an (amino) acyl
adenylate by hydrolysis of ATP. The activated acyl
moiety then forms a thioester to the enzyme-bound
cofactor phosphopantetheine of a peptidyl carrier
protein domain. NRPSs are large multifunctional enzymes
which synthesize many therapeutically useful peptides in
bacteria and fungi via a template-directed, nucleic acid
independent nonribosomal mechanism. These natural
products include antibiotics, immunosuppressants, plant
and animal toxins, and enzyme inhibitors. NRPS has a
distinct modular structure in which each module is
responsible for the recognition, activation, and in some
cases, modification of a single amino acid residue of
the final peptide product. The modules can be subdivided
into domains that catalyze specific biochemical
reactions. This family includes the saframycin A gene
cluster from Streptomyces lavendulae which implicates
the NRPS system for assembling the unusual tetrapeptidyl
skeleton in an iterative manner. It also includes
saframycin Mx1 produced by Myxococcus xanthus NRPS.
Length = 449
Score = 63.1 bits (154), Expect = 2e-11
Identities = 36/127 (28%), Positives = 55/127 (43%), Gaps = 16/127 (12%)
Query: 98 ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVV 157
RR DG L GR+DD + V G + E+EA L S P V+EA VV
Sbjct: 339 VRRRADGQLEYLGRIDDQVKVRGFRIE-------------LGEIEAALRSIPGVAEAVVV 385
Query: 158 SRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSG 217
+ L +I GA + ++ L+ ++ ++ + +P LP T +G
Sbjct: 386 AIGDAAGDRQLVAYIVADPGAAID---IEDLRARLATRLPAYMVPSRFVRLDALPLTPNG 442
Query: 218 KIMRRVL 224
KI R+ L
Sbjct: 443 KIDRKAL 449
>gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated.
Length = 528
Score = 63.1 bits (154), Expect = 2e-11
Identities = 40/129 (31%), Positives = 61/129 (47%), Gaps = 18/129 (13%)
Query: 99 RRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFT-EVEACLASHPDVSEAAVV 157
D G+L++TGR DM +SG GS V+ E+E L +HP VSE AV+
Sbjct: 403 HLDARGFLYITGRASDMY-ISG--------GS-----NVYPREIEEKLLTHPAVSEVAVL 448
Query: 158 SRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSG 217
P PV GE GA ++ +L + K+ + +P LPK+ G
Sbjct: 449 GVPDPVWGEVGVAVCVARDGAPVDEA---ELLAWLDGKVARYKLPKRFFFWDALPKSGYG 505
Query: 218 KIMRRVLRK 226
KI ++++R+
Sbjct: 506 KITKKMVRE 514
>gnl|CDD|178097 PLN02479, PLN02479, acetate-CoA ligase.
Length = 567
Score = 62.9 bits (153), Expect = 2e-11
Identities = 45/135 (33%), Positives = 69/135 (51%), Gaps = 19/135 (14%)
Query: 103 DGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHP 162
DGY+ + R D++ +SG G S+ EVE + +HP V EA+VV+RP
Sbjct: 443 DGYIEIKDRSKDII-ISG--------GENISS----LEVENVVYTHPAVLEASVVARPDE 489
Query: 163 VKGECLYCFITPAGGATFNQE--LVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSGKIM 220
GE F+T G + E L + + + RE++ + +P + P LPKT +GKI
Sbjct: 490 RWGESPCAFVTLKPGVDKSDEAALAEDIMKFCRERLPAYWVPKSVVFGP-LPKTATGKIQ 548
Query: 221 RRVLRKVAVNDREVG 235
+ VLR A +E+G
Sbjct: 549 KHVLRAKA---KEMG 560
>gnl|CDD|237374 PRK13388, PRK13388, acyl-CoA synthetase; Provisional.
Length = 540
Score = 62.0 bits (151), Expect = 4e-11
Identities = 34/129 (26%), Positives = 55/129 (42%), Gaps = 16/129 (12%)
Query: 98 ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVV 157
A RD DG+++ GR D + V G ++ +E L HP ++ AV
Sbjct: 388 AYRDADGWIYFAGRTADWMRVDGENLSA-------------APIERILLRHPAINRVAVY 434
Query: 158 SRPHPVKGECLYCFITPAGGATFN-QELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRS 216
+ P G+ + + GATF+ L Q +G A P ++ A LP T +
Sbjct: 435 AVPDERVGDQVMAALVLRDGATFDPDAFAAFLAAQ--PDLGTKAWPRYVRIAADLPSTAT 492
Query: 217 GKIMRRVLR 225
K+++R L
Sbjct: 493 NKVLKRELI 501
>gnl|CDD|236803 PRK10946, entE, enterobactin synthase subunit E; Provisional.
Length = 536
Score = 61.5 bits (150), Expect = 6e-11
Identities = 47/158 (29%), Positives = 70/158 (44%), Gaps = 33/158 (20%)
Query: 81 HNNFSFTTNN----SDLLLSSARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAK 136
HN +F N DL+ D DGY+ V GR D +N G K
Sbjct: 400 HNASAFDANGFYCSGDLVS----IDPDGYITVVGREKDQINRGGE--------------K 441
Query: 137 VFTE-VEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVK--QLKQQVR 193
+ E +E L HP V AA+VS + GE F+ +E +K QL++ +R
Sbjct: 442 IAAEEIENLLLRHPAVIHAALVSMEDELMGEKSCAFLVV-------KEPLKAVQLRRFLR 494
Query: 194 EK-IGPFAMPDVIQHAPRLPKTRSGKIMRRVLRKVAVN 230
E+ I F +PD ++ LP T GK+ ++ LR+ +
Sbjct: 495 EQGIAEFKLPDRVECVDSLPLTAVGKVDKKQLRQWLAS 532
>gnl|CDD|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated.
Length = 497
Score = 61.4 bits (149), Expect = 6e-11
Identities = 39/125 (31%), Positives = 65/125 (52%), Gaps = 16/125 (12%)
Query: 101 DEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRP 160
DE+G+L++T R DM+ +SG G ++ +EVE + P+V+EAAV+
Sbjct: 384 DEEGFLYLTDRKKDMI-ISG--------GENIAS----SEVERVIYELPEVAEAAVIGVH 430
Query: 161 HPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSGKIM 220
GE + + GAT E L + R+++ F +P ++ LP+ SGK++
Sbjct: 431 DDRWGERITAVVVLNPGATLTLE---ALDRHCRQRLASFKVPRQLKVRDELPRNPSGKVL 487
Query: 221 RRVLR 225
+RVLR
Sbjct: 488 KRVLR 492
>gnl|CDD|236231 PRK08308, PRK08308, acyl-CoA synthetase; Validated.
Length = 414
Score = 61.2 bits (149), Expect = 7e-11
Identities = 37/132 (28%), Positives = 55/132 (41%), Gaps = 32/132 (24%)
Query: 100 RDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFT-EVEACLASHPDVSEAAVVS 158
+ E G L GR+DD++NVSG V+ EVE + P V EA V
Sbjct: 301 KSERGTLHFMGRMDDVINVSG--------------LNVYPIEVEDVMLRLPGVQEAVVYR 346
Query: 159 RPHPVKGE---CLYC---FITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLP 212
PV GE I P QL++ + + P+ +P I+ +P
Sbjct: 347 GKDPVAGERVKAKVISHEEIDPV-----------QLREWCIQHLAPYQVPHEIESVTEIP 395
Query: 213 KTRSGKIMRRVL 224
K +GK+ R++L
Sbjct: 396 KNANGKVSRKLL 407
>gnl|CDD|235531 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated.
Length = 573
Score = 61.2 bits (149), Expect = 9e-11
Identities = 35/129 (27%), Positives = 57/129 (44%), Gaps = 16/129 (12%)
Query: 98 ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVV 157
+EDG++ + R+ +++ G F Y + EVE L HP V +AAVV
Sbjct: 453 VVMEEDGFIRIVDRIKELIITGG-------FNVYPA------EVEEVLREHPGVEDAAVV 499
Query: 158 SRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSG 217
P E + + GA + E L+ RE + + +P H LP+ + G
Sbjct: 500 GLPREDGSEEVVAAVVLEPGAALDPE---GLRAYCREHLTRYKVPRRFYHVDELPRDQLG 556
Query: 218 KIMRRVLRK 226
K+ RR +R+
Sbjct: 557 KVRRREVRE 565
>gnl|CDD|184022 PRK13391, PRK13391, acyl-CoA synthetase; Provisional.
Length = 511
Score = 60.9 bits (148), Expect = 1e-10
Identities = 38/125 (30%), Positives = 59/125 (47%), Gaps = 13/125 (10%)
Query: 101 DEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRP 160
DEDGYL++T R M+ +SG + +Y E E L +HP V++AAV P
Sbjct: 393 DEDGYLYLTDRAAFMI-ISGGV-NIYP-----------QEAENLLITHPKVADAAVFGVP 439
Query: 161 HPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSGKIM 220
+ GE + + P G L +L R+++ P I LP+ +GK+
Sbjct: 440 NEDLGEEVKAVVQPVDGVDPGPALAAELIAFCRQRLSRQKCPRSIDFEDELPRLPTGKLY 499
Query: 221 RRVLR 225
+R+LR
Sbjct: 500 KRLLR 504
>gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed.
Length = 547
Score = 60.8 bits (148), Expect = 1e-10
Identities = 41/136 (30%), Positives = 67/136 (49%), Gaps = 17/136 (12%)
Query: 98 ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVV 157
AR D DGY+ ++GR D++ G + V E+EA L HP +++ A+V
Sbjct: 427 ARIDADGYIRISGRSKDVIIRGGENIPV-------------VEIEALLYRHPAIAQVAIV 473
Query: 158 SRPHPVKGECLYCFITPAGGATFNQE-LVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRS 216
+ P GE F+ P G + + E +V+ LK Q K+ +P+ + LP+T S
Sbjct: 474 AYPDERLGERACAFVVPRPGQSLDFEEMVEFLKAQ---KVAKQYIPERLVVRDALPRTPS 530
Query: 217 GKIMRRVLRKVAVNDR 232
GKI + LR++ +
Sbjct: 531 GKIQKFRLREMLRGED 546
>gnl|CDD|233316 TIGR01217, ac_ac_CoA_syn, acetoacetyl-CoA synthase. This enzyme
catalyzes the first step of the mevalonate pathway of
IPP biosynthesis. Most bacteria do not use this pathway,
but rather the deoxyxylulose pathway [Central
intermediary metabolism, Other].
Length = 652
Score = 60.3 bits (146), Expect = 2e-10
Identities = 37/152 (24%), Positives = 72/152 (47%), Gaps = 15/152 (9%)
Query: 104 GYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHPV 163
G + + GR D LN G M +A+++ VE +V E+ + + P
Sbjct: 513 GGIVIHGRSDSTLNPQGVRM---------GSAEIYNAVERL----DEVRESLCIGQEQPD 559
Query: 164 KGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSGKIMRRV 223
G + F+ A GAT + L+ ++K+ +R + P +PD I P +P T +GK +
Sbjct: 560 GGYRVVLFVHLAPGATLDDALLDRIKRTIRAGLSPRHVPDEIIEVPGIPHTLTGKRVEVA 619
Query: 224 LRKVAVNDREVGDKSTLADEDVVDELFQNRPE 255
+++V + V + + + +++D L++ E
Sbjct: 620 VKRV-LQGTPVDNPGAIDNPELLD-LYEELAE 649
>gnl|CDD|183506 PRK12406, PRK12406, long-chain-fatty-acid--CoA ligase; Provisional.
Length = 509
Score = 59.7 bits (145), Expect = 3e-10
Identities = 40/125 (32%), Positives = 61/125 (48%), Gaps = 16/125 (12%)
Query: 101 DEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRP 160
D DGYL++ R DM+ +SG G A E+EA L + P V + AV P
Sbjct: 390 DADGYLFLCDRKRDMV-ISG--------GVNIYPA----EIEAVLHAVPGVHDCAVFGIP 436
Query: 161 HPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSGKIM 220
GE L + P GAT ++ ++ Q++ ++ + +P I+ LP+ SGKI
Sbjct: 437 DAEFGEALMAVVEPQPGATLDEADIRA---QLKARLAGYKVPKHIEIMAELPREDSGKIF 493
Query: 221 RRVLR 225
+R LR
Sbjct: 494 KRRLR 498
>gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual
roles as fatty acid transporters and its activation
enzymes. Fatty acid transport protein (FATP) transports
long-chain or very-long-chain fatty acids across the
plasma membrane. FATPs also have fatty acid CoA
synthetase activity, thus playing dual roles as fatty
acid transporters and its activation enzymes. At least
five copies of FATPs are identified in mammalian cells.
This family also includes prokaryotic FATPs. FATPs are
the key players in the trafficking of exogenous fatty
acids into the cell and in intracellular fatty acid
homeostasis.
Length = 444
Score = 59.6 bits (145), Expect = 3e-10
Identities = 42/144 (29%), Positives = 59/144 (40%), Gaps = 23/144 (15%)
Query: 89 NNSDLLLSSARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASH 148
N DL+ RRD GY + R+ D G V ST TEVE LA H
Sbjct: 321 NTGDLV----RRDGFGYFYFVDRLGDTFRWKGE--NV-------ST----TEVEEVLAKH 363
Query: 149 PDVSEAAV--VSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQ 206
P V EA V V P +G +T A GA F+ + + E++ +A P ++
Sbjct: 364 PGVEEANVYGVEVPG-TEGRAGMAALTLAPGAAFD---PQAFAAHLDEQLPAYARPLFLR 419
Query: 207 HAPRLPKTRSGKIMRRVLRKVAVN 230
+ T + K + LRK +
Sbjct: 420 VQAAMETTGTFKYQKTDLRKEGFD 443
>gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL). 4-Coumarate:coenzyme A
ligase is a key enzyme in the phenylpropanoid metabolic
pathway for monolignol and flavonoid biosynthesis. It
catalyzes the synthesis of hydroxycinnamate-CoA
thioesters in a two-step reaction, involving the
formation of hydroxycinnamate-AMP anhydride and the
nucleophilic substitution of AMP by CoA. The
phenylpropanoid pathway is one of the most important
secondary metabolism pathways in plants and
hydroxycinnamate-CoA thioesters are the precursors of
lignin and other important phenylpropanoids.
Length = 504
Score = 59.2 bits (144), Expect = 4e-10
Identities = 38/134 (28%), Positives = 63/134 (47%), Gaps = 36/134 (26%)
Query: 101 DEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVF----TEVEACLASHPDVSEAAV 156
DEDGYL++ R+ +++ G F E+EA L SHP++++AAV
Sbjct: 397 DEDGYLFIVDRLKELIKYKG-----------------FQVAPAELEALLLSHPEIADAAV 439
Query: 157 VSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPF------AMPDVIQHAPR 210
+ P GE F+ G+ +++ ++ Q V +++ P+ D I
Sbjct: 440 IPYPDEEAGEIPMAFVVRQPGSELSED---EVMQFVAKQVAPYKKVRKVVFVDAI----- 491
Query: 211 LPKTRSGKIMRRVL 224
PK+ SGKI+RR L
Sbjct: 492 -PKSPSGKILRREL 504
>gnl|CDD|236108 PRK07824, PRK07824, O-succinylbenzoic acid--CoA ligase;
Provisional.
Length = 358
Score = 58.9 bits (143), Expect = 4e-10
Identities = 36/125 (28%), Positives = 54/125 (43%), Gaps = 18/125 (14%)
Query: 103 DGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTE-VEACLASHPDVSEAAVVSRPH 161
DG L V GR DD ++ +G L V + VEA LA+HP V++ AV P
Sbjct: 246 DGVLTVLGRADDAIS-TGGL-------------TVLPQVVEAALATHPAVADCAVFGLPD 291
Query: 162 PVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSGKIMR 221
G+ + + GG ++ L+ V + A P + LP+ GK+ R
Sbjct: 292 DRLGQRVVAAVVGDGGPA---PTLEALRAHVARTLDRTAAPRELHVVDELPRRGIGKVDR 348
Query: 222 RVLRK 226
R L +
Sbjct: 349 RALVR 353
>gnl|CDD|235719 PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase;
Provisional.
Length = 542
Score = 59.0 bits (143), Expect = 4e-10
Identities = 38/139 (27%), Positives = 60/139 (43%), Gaps = 22/139 (15%)
Query: 100 RDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSR 159
RD DG+ R+ D + G ++ + EVE L SHP V+ AAV
Sbjct: 410 RDADGWFRFVDRIKDAIRRRGENISSF-------------EVEQVLLSHPAVAAAAVFPV 456
Query: 160 PHPVKGECLYCFITPAGGATFN-QELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSGK 218
P + + + + G LV+ + + + FA+P ++ LPKT +GK
Sbjct: 457 PSELGEDEVMAAVVLRDGTALEPVALVRHCEPR----LAYFAVPRYVEFVAALPKTENGK 512
Query: 219 IMRRVLRKVAVN----DRE 233
+ + VLR+ V DRE
Sbjct: 513 VQKFVLREQGVTADTWDRE 531
>gnl|CDD|181546 PRK08751, PRK08751, putative long-chain fatty acyl CoA ligase;
Provisional.
Length = 560
Score = 59.1 bits (143), Expect = 4e-10
Identities = 42/131 (32%), Positives = 59/131 (45%), Gaps = 17/131 (12%)
Query: 98 ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVV 157
AR DE G++++ R DM+ VSG F Y + E+E +A P V E A V
Sbjct: 445 ARMDEQGFVYIVDRKKDMILVSG-------FNVYPN------EIEDVIAMMPGVLEVAAV 491
Query: 158 SRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSG 217
P GE + I A +++ K R + + P +I+ LPKT G
Sbjct: 492 GVPDEKSGEIVKVVIVKKDPALTAEDV----KAHARANLTGYKQPRIIEFRKELPKTNVG 547
Query: 218 KIMRRVLRKVA 228
KI+RR LR A
Sbjct: 548 KILRRELRDAA 558
>gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal
peptide synthetases (NRPS), including Streptoalloteichus
tallysomycin biosynthesis genes. The adenylation (A)
domain of NRPS recognizes a specific amino acid or
hydroxy acid and activates it as an (amino) acyl
adenylate by hydrolysis of ATP. The activated acyl
moiety then forms a thioester to the enzyme-bound
cofactor phosphopantetheine of a peptidyl carrier
protein domain. NRPSs are large multifunctional enzymes
which synthesize many therapeutically useful peptides in
bacteria and fungi via a template-directed, nucleic acid
independent nonribosomal mechanism. These natural
products include antibiotics, immunosuppressants, plant
and animal toxins, and enzyme inhibitors. NRPS has a
distinct modular structure in which each module is
responsible for the recognition, activation, and in some
cases, modification of a single amino acid residue of
the final peptide product. The modules can be subdivided
into domains that catalyze specific biochemical
reactions. This family includes the TLM biosynthetic
gene cluster from Streptoalloteichus that consists of
nine NRPS genes; the N-terminal module of TlmVI (NRPS-5)
and the starter module of BlmVI (NRPS-5) are comprised
of the acyl CoA ligase (AL) and acyl carrier protein
(ACP)-like domains, which are thought to be involved in
the biosynthesis of the beta-aminoalaninamide moiety.
Length = 476
Score = 58.8 bits (143), Expect = 5e-10
Identities = 33/128 (25%), Positives = 50/128 (39%), Gaps = 19/128 (14%)
Query: 98 ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKV-FTEVEACLASHPDVSEAAV 156
R DG + GR D + + G+ +V E+EA LA HP V A V
Sbjct: 367 GRYRPDGTIEFLGRADHQVKIRGY--------------RVELGEIEAALARHPGVQRAVV 412
Query: 157 VSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRS 216
V + L F+ GA + L+ + E + + +P LP T +
Sbjct: 413 VVVGDG-GAKALAAFVVAEDGAAVDAA---VLRAALAELLPAYMVPSRFVVLDALPLTAN 468
Query: 217 GKIMRRVL 224
GK+ R+ L
Sbjct: 469 GKVDRKAL 476
>gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase.
Length = 537
Score = 58.8 bits (143), Expect = 6e-10
Identities = 35/95 (36%), Positives = 50/95 (52%), Gaps = 10/95 (10%)
Query: 140 EVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQL--KQQV-REKI 196
E+EA L SHP +++AAVV V GE F+ + G+ ++ +KQ KQ V ++I
Sbjct: 449 ELEALLISHPSIADAAVVPMKDEVAGEVPVAFVVRSNGSEITEDEIKQFVAKQVVFYKRI 508
Query: 197 GPFAMPDVIQHAPRLPKTRSGKIMRRVLR-KVAVN 230
D I PK SGKI+R+ LR K+A
Sbjct: 509 HKVFFVDSI------PKAPSGKILRKDLRAKLAAG 537
>gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated.
Length = 557
Score = 58.5 bits (142), Expect = 6e-10
Identities = 40/125 (32%), Positives = 57/125 (45%), Gaps = 17/125 (13%)
Query: 101 DEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRP 160
DE GY + R DM+ VSG F Y + E+E +ASHP V E A V P
Sbjct: 446 DERGYTKIVDRKKDMILVSG-------FNVYPN------EIEEVVASHPGVLEVAAVGVP 492
Query: 161 HPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSGKIM 220
GE + F+ A +++ K+++ + P ++ LPKT GKI+
Sbjct: 493 DEHSGEAVKLFVVKKDPALTEEDVKAFCKERLTN----YKRPKFVEFRTELPKTNVGKIL 548
Query: 221 RRVLR 225
RR LR
Sbjct: 549 RRELR 553
>gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal
peptide synthetases (NRPS), including salinosporamide A
polyketide synthase. The adenylation (A) domain of NRPS
recognizes a specific amino acid or hydroxy acid and
activates it as an (amino) acyl adenylate by hydrolysis
of ATP. The activated acyl moiety then forms a thioester
to the enzyme-bound cofactor phosphopantetheine of a
peptidyl carrier protein domain. NRPSs are large
multifunctional enzymes which synthesize many
therapeutically useful peptides in bacteria and fungi
via a template-directed, nucleic acid independent
nonribosomal mechanism. These natural products include
antibiotics, immunosuppressants, plant and animal
toxins, and enzyme inhibitors. NRPS has a distinct
modular structure in which each module is responsible
for the recognition, activation, and in some cases,
modification of a single amino acid residue of the final
peptide product. The modules can be subdivided into
domains that catalyze specific biochemical reactions.
This family includes the myxovirescin (TA) antibiotic
biosynthetic gene in Myxococcus xanthus; TA production
plays a role in predation. It also includes the
salinosporamide A polyketide synthase which is involved
in the biosynthesis of salinosporamide A, a marine
microbial metabolite whose chlorine atom is crucial for
potent proteasome inhibition and anticancer activity.
Length = 438
Score = 58.3 bits (142), Expect = 7e-10
Identities = 35/127 (27%), Positives = 55/127 (43%), Gaps = 16/127 (12%)
Query: 98 ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVV 157
R DG L GR DD + + G + + E+EA L +HP V++A VV
Sbjct: 328 VRWRPDGRLEYLGRADDQVKIRGFRIEL-------------GEIEAALRAHPGVADAVVV 374
Query: 158 SRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSG 217
R + L ++ P GA + E L+ +R + + +P LP T +G
Sbjct: 375 VREEGPGDQRLVAYVVPKAGAAPDAE---ALRAALRATLPAYMVPAAFVQLDELPLTPNG 431
Query: 218 KIMRRVL 224
K+ R+ L
Sbjct: 432 KVDRKAL 438
>gnl|CDD|213283 cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetases similar to
LC-FACS from Thermus thermophiles. This family includes
fatty acyl-CoA synthetases that can activate
medium-chain to long-chain fatty acids. They catalyze
the ATP-dependent acylation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. Fatty
acyl-CoA synthetases are responsible for fatty acid
degradation as well as physiological regulation of
cellular functions via the production of fatty acyl-CoA
esters. The fatty acyl-CoA synthetase from Thermus
thermophiles in this family has been shown to catalyze
the long-chain fatty acid, myristoyl acid, while another
member in this family, the AlkK protein identified in
Pseudomonas oleovorans, targets medium chain fatty
acids. This family also includes an uncharacterized
subgroup of FACS.
Length = 509
Score = 58.6 bits (141), Expect = 7e-10
Identities = 37/127 (29%), Positives = 57/127 (44%), Gaps = 18/127 (14%)
Query: 101 DEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRP 160
DE+GY+ + R+ D++ G + S ++E L HP V EAAVV+ P
Sbjct: 400 DEEGYVEIKDRLKDLIKSGGEWI-----SS--------VDLENALMGHPKVKEAAVVAIP 446
Query: 161 HPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAM-PDVIQHAPRLPKTRSGKI 219
HP E + P G +EL + L + PD A +P+T +GK
Sbjct: 447 HPKWQERPLAVVVPRGEKPTPEELNEHLLK----AGFAKWQLPDAYVFAEEIPRTSAGKF 502
Query: 220 MRRVLRK 226
++R LR+
Sbjct: 503 LKRALRE 509
>gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase;
Validated.
Length = 517
Score = 58.2 bits (141), Expect = 1e-09
Identities = 27/129 (20%), Positives = 57/129 (44%), Gaps = 16/129 (12%)
Query: 97 SARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAV 156
+ DE+G+ + R +M+ G ++ E+E +A+HP + + V
Sbjct: 405 TGYVDEEGFFYFVDRRCNMIKRGGENVSC-------------VELENIIATHPKIQDIVV 451
Query: 157 VSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRS 216
V ++ E + F+ G T ++E + + + F +P ++ LP+ S
Sbjct: 452 VGIKDSIRDEAIKAFVVLNEGETLSEE---EFFAFCEQNMAKFKVPSYLEIRKDLPRNCS 508
Query: 217 GKIMRRVLR 225
GKI+++ L+
Sbjct: 509 GKIIKKNLK 517
>gnl|CDD|235673 PRK06018, PRK06018, putative acyl-CoA synthetase; Provisional.
Length = 542
Score = 57.1 bits (138), Expect = 2e-09
Identities = 36/126 (28%), Positives = 57/126 (45%), Gaps = 16/126 (12%)
Query: 101 DEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRP 160
D GY+ +T R D++ SG G + S+ ++E HP V+EAAV+
Sbjct: 421 DAYGYMRITDRSKDVIK-SG--------GEWISS----IDLENLAVGHPKVAEAAVIGVY 467
Query: 161 HPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSGKIM 220
HP E + G T +E + + KI + MPD + +P T +GKI+
Sbjct: 468 HPKWDERPLLIVQLKPGETATREEILKYMDG---KIAKWWMPDDVAFVDAIPHTATGKIL 524
Query: 221 RRVLRK 226
+ LR+
Sbjct: 525 KTALRE 530
>gnl|CDD|236100 PRK07798, PRK07798, acyl-CoA synthetase; Validated.
Length = 533
Score = 56.8 bits (138), Expect = 2e-09
Identities = 34/125 (27%), Positives = 54/125 (43%), Gaps = 24/125 (19%)
Query: 98 ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYC-STA--KVFTE-VEACLASHPDVSE 153
AR + DG + + GR GS C +T KVF E VE L +HPDV++
Sbjct: 416 ARVEADGTITLLGR-----------------GSVCINTGGEKVFPEEVEEALKAHPDVAD 458
Query: 154 AAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPK 213
A VV P G+ + + GA + +L+ R + + +P I + +
Sbjct: 459 ALVVGVPDERWGQEVVAVVQLREGARPDLA---ELRAHCRSSLAGYKVPRAIWFVDEVQR 515
Query: 214 TRSGK 218
+ +GK
Sbjct: 516 SPAGK 520
>gnl|CDD|215576 PLN03102, PLN03102, acyl-activating enzyme; Provisional.
Length = 579
Score = 56.6 bits (136), Expect = 3e-09
Identities = 48/164 (29%), Positives = 71/164 (43%), Gaps = 29/164 (17%)
Query: 103 DGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHP 162
DG++ + R D++ +SG G S+ EVE L +P V E AVV+ PHP
Sbjct: 433 DGHVEIKDRSKDII-ISG--------GENISS----VEVENVLYKYPKVLETAVVAMPHP 479
Query: 163 VKGECLYCFITPAGGATFNQELVKQLK-------QQVREKIGPFAMPDVIQHAPRLPKTR 215
GE F+ G T ++ V +L + RE + F P + LPK
Sbjct: 480 TWGETPCAFVVLEKGETTKEDRVDKLVTRERDLIEYCRENLPHFMCPRKVVFLQELPKNG 539
Query: 216 SGKIMRRVLRKVAVNDREVGDKSTLA-DEDVVDELFQNRPEGNV 258
+GKI++ LR +A K + DED V + RP +
Sbjct: 540 NGKILKPKLRDIA--------KGLVVEDEDNVIKKVHQRPVEHF 575
>gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like.
Length = 560
Score = 56.4 bits (136), Expect = 3e-09
Identities = 36/132 (27%), Positives = 64/132 (48%), Gaps = 16/132 (12%)
Query: 101 DEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRP 160
DEDGYL++ R+ +++ G + ++EA L SHP++ +AAV + P
Sbjct: 441 DEDGYLYIVDRLKEIIKYKGFQIAP-------------ADLEAVLISHPEIIDAAVTAVP 487
Query: 161 HPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSGKIM 220
GE F+ G+T +QE + V +++ P+ + +PK+ +GKI+
Sbjct: 488 DKECGEIPVAFVVRRQGSTLSQE---AVINYVAKQVAPYKKVRKVVFVQSIPKSPAGKIL 544
Query: 221 RRVLRKVAVNDR 232
RR L++ N
Sbjct: 545 RRELKRSLTNSV 556
>gnl|CDD|139538 PRK13390, PRK13390, acyl-CoA synthetase; Provisional.
Length = 501
Score = 56.2 bits (135), Expect = 4e-09
Identities = 37/125 (29%), Positives = 58/125 (46%), Gaps = 13/125 (10%)
Query: 101 DEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRP 160
DEDGYL++ R M+ G + +Y E E L HP V + AV+ P
Sbjct: 390 DEDGYLYLADRKSFMIISGG--VNIYP-----------QETENALTMHPAVHDVAVIGVP 436
Query: 161 HPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSGKIM 220
P GE + I G + EL ++L R +I + P ++ LP+T +GK++
Sbjct: 437 DPEMGEQVKAVIQLVEGIRGSDELARELIDYTRSRIAHYKAPRSVEFVDELPRTPTGKLV 496
Query: 221 RRVLR 225
+ +LR
Sbjct: 497 KGLLR 501
>gnl|CDD|171539 PRK12492, PRK12492, long-chain-fatty-acid--CoA ligase; Provisional.
Length = 562
Score = 56.0 bits (135), Expect = 4e-09
Identities = 38/129 (29%), Positives = 59/129 (45%), Gaps = 19/129 (14%)
Query: 101 DEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRP 160
D DG++ + R D++ VSG F Y + E+E + +HP V+ A + P
Sbjct: 452 DPDGFVRIVDRKKDLIIVSG-------FNVYPN------EIEDVVMAHPKVANCAAIGVP 498
Query: 161 HPVKGECLYCFITP-AGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSGKI 219
GE + F+ G + V++LK +E + +P I LP T GKI
Sbjct: 499 DERSGEAVKLFVVARDPGLS-----VEELKAYCKENFTGYKVPKHIVLRDSLPMTPVGKI 553
Query: 220 MRRVLRKVA 228
+RR LR +A
Sbjct: 554 LRRELRDIA 562
>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated.
Length = 4334
Score = 55.9 bits (135), Expect = 6e-09
Identities = 34/127 (26%), Positives = 59/127 (46%), Gaps = 14/127 (11%)
Query: 98 ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVV 157
ARR DG L GR+D + + G+ + + E+EA L +V EAAV
Sbjct: 4110 ARRRSDGVLEYVGRIDHQVKIRGYRIEL-------------GEIEARLHEQAEVREAAVA 4156
Query: 158 SRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSG 217
+ G+ L ++ P L++++KQ++R ++ + +P RLP +G
Sbjct: 4157 VQEGV-NGKHLVGYLVPHQTVLAQGALLERIKQRLRAELPDYMVPLHWLWLDRLPLNANG 4215
Query: 218 KIMRRVL 224
K+ R+ L
Sbjct: 4216 KLDRKAL 4222
Score = 39.4 bits (92), Expect = 0.002
Identities = 30/128 (23%), Positives = 54/128 (42%), Gaps = 15/128 (11%)
Query: 99 RRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVS 158
R DG + GR+D + + G + + E+E+ L HP V EA V++
Sbjct: 2577 RLRADGLVEYVGRIDHQVKIRGFRIEL-------------GEIESRLLEHPAVREAVVLA 2623
Query: 159 RPHPVKGECLYCFITPAGGATFNQ--ELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRS 216
P + ++ G L + LK +++++ + +P + LP T +
Sbjct: 2624 LDTPSGKQLAGYLVSAVAGQDDEAQAALREALKAHLKQQLPDYMVPAHLILLDSLPLTAN 2683
Query: 217 GKIMRRVL 224
GK+ RR L
Sbjct: 2684 GKLDRRAL 2691
Score = 35.1 bits (81), Expect = 0.036
Identities = 33/127 (25%), Positives = 55/127 (43%), Gaps = 17/127 (13%)
Query: 98 ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVV 157
AR + DG L GR+D + + G + E++A L + P V++AAV+
Sbjct: 1513 ARWNADGALEYLGRLDQQVKLRGFRVEP-------------EEIQARLLAQPGVAQAAVL 1559
Query: 158 SRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSG 217
R G L + T G E +LK + ++ + +P + ++P SG
Sbjct: 1560 VR-EGAAGAQLVGYYTGEAGQEAEAE---RLKAALAAELPEYMVPAQLIRLDQMPLGPSG 1615
Query: 218 KIMRRVL 224
K+ RR L
Sbjct: 1616 KLDRRAL 1622
Score = 34.8 bits (80), Expect = 0.050
Identities = 46/145 (31%), Positives = 57/145 (39%), Gaps = 52/145 (35%)
Query: 103 DGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAK--VFTEVE-------ACLASHPDVSE 153
DG L+VTGR+ DML V GH + Y + V EVE A A + E
Sbjct: 441 DGELFVTGRLKDMLIVRGHNL-------YPQDIEKTVEREVEVVRKGRVAAFAVNHQGEE 493
Query: 154 ----AAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAP 209
AA +SR V+ I P Q L+K ++Q V E Q AP
Sbjct: 494 GIGIAAEISR--SVQK------ILPP------QALIKSIRQAVAE---------ACQEAP 530
Query: 210 R---------LPKTRSGKIMRRVLR 225
LPKT SGK+ R R
Sbjct: 531 SVVLLLNPGALPKTSSGKLQRSACR 555
>gnl|CDD|213291 cd05924, FACL_like_5, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 365
Score = 53.8 bits (130), Expect = 2e-08
Identities = 34/122 (27%), Positives = 53/122 (43%), Gaps = 18/122 (14%)
Query: 98 ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFT-EVEACLASHPDVSEAAV 156
AR + DG + + GR +N G KVF EVE L +HPDV++A V
Sbjct: 254 ARVEADGTITLLGRGSVCINTGGE--------------KVFPEEVEEALKAHPDVADALV 299
Query: 157 VSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRS 216
V P G+ + + GA + +L+ R+ + + +P I +P+ S
Sbjct: 300 VGVPDERWGQRVVAVVQLRAGAGLDLA---ELRDHCRQHLAGYKLPRAIVVVDTVPRAPS 356
Query: 217 GK 218
GK
Sbjct: 357 GK 358
>gnl|CDD|215553 PLN03052, PLN03052, acetate--CoA ligase; Provisional.
Length = 728
Score = 53.5 bits (129), Expect = 3e-08
Identities = 36/133 (27%), Positives = 54/133 (40%), Gaps = 20/133 (15%)
Query: 100 RDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFT-EVE-ACLASHPDVSEAAVV 157
R GY GR DD +N+ G KV + E+E C A+ V E A +
Sbjct: 599 RTSGGYYRAHGRADDTMNLGG--------------IKVSSVEIERVCNAADESVLETAAI 644
Query: 158 SRPHPVKGECLYCFITPAGGATFNQELVKQLKQ----QVREKIGPFAMPDVIQHAPRLPK 213
P P G + + +LK+ +++K+ P + P P+
Sbjct: 645 GVPPPGGGPEQLVIAAVLKDPPGSNPDLNELKKIFNSAIQKKLNPLFKVSAVVIVPSFPR 704
Query: 214 TRSGKIMRRVLRK 226
T S K+MRRVLR+
Sbjct: 705 TASNKVMRRVLRQ 717
>gnl|CDD|215189 PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1.
Length = 546
Score = 52.7 bits (126), Expect = 6e-08
Identities = 35/129 (27%), Positives = 58/129 (44%), Gaps = 22/129 (17%)
Query: 101 DEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRP 160
D+DG +++ R+ +++ G + E+EA L +HP V +AAVV P
Sbjct: 428 DDDGDIFIVDRIKELIKYKGFQVAP-------------AELEAILLTHPSVEDAAVVPLP 474
Query: 161 HPVKGECLYCFITPAGGATFNQELVKQ---LKQQVREKIGPFAMPDVIQHAPRLPKTRSG 217
GE PA N + + + V + + V+Q +PK+ SG
Sbjct: 475 DEEAGE------IPAACVVINPKAKESEEDILNFVAANVAHYKKVRVVQFVDSIPKSLSG 528
Query: 218 KIMRRVLRK 226
KIMRR+L++
Sbjct: 529 KIMRRLLKE 537
>gnl|CDD|236096 PRK07787, PRK07787, acyl-CoA synthetase; Validated.
Length = 471
Score = 52.3 bits (126), Expect = 7e-08
Identities = 35/128 (27%), Positives = 52/128 (40%), Gaps = 17/128 (13%)
Query: 98 ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVV 157
A D DG + GR L SG Y G+ E+E L HP V EAAVV
Sbjct: 358 AVVDPDGMHRIVGRESTDLIKSGG----YRIGA--------GEIETALLGHPGVREAAVV 405
Query: 158 SRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSG 217
P G+ + ++ A EL+ + QQ + P ++ LP+ G
Sbjct: 406 GVPDDDLGQRIVAYVVGADDVA-ADELIDFVAQQ----LSVHKRPREVRFVDALPRNAMG 460
Query: 218 KIMRRVLR 225
K++++ L
Sbjct: 461 KVLKKQLL 468
>gnl|CDD|139531 PRK13383, PRK13383, acyl-CoA synthetase; Provisional.
Length = 516
Score = 52.3 bits (125), Expect = 8e-08
Identities = 35/124 (28%), Positives = 57/124 (45%), Gaps = 16/124 (12%)
Query: 101 DEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRP 160
D G L++ GR DDM+ G VY VE LA+HP V++ AV+ P
Sbjct: 407 DNAGRLFIVGREDDMIISGGE--NVYP-----------RAVENALAAHPAVADNAVIGVP 453
Query: 161 HPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSGKIM 220
G L F+ G+ + QL+ +++++ F P I +P+ +GK++
Sbjct: 454 DERFGHRLAAFVVLHPGSGVDAA---QLRDYLKDRVSRFEQPRDINIVSSIPRNPTGKVL 510
Query: 221 RRVL 224
R+ L
Sbjct: 511 RKEL 514
>gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional.
Length = 558
Score = 52.1 bits (125), Expect = 1e-07
Identities = 31/131 (23%), Positives = 60/131 (45%), Gaps = 16/131 (12%)
Query: 101 DEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRP 160
DE GY+ + GR DM+ G +Y E+E L +HP V++ V P
Sbjct: 439 DEQGYVRIVGRSKDMIIRGGE--NIY-----------PREIEEFLFTHPAVADVQVFGVP 485
Query: 161 HPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSGKIM 220
GE + ++ G ++E +L++ + +I F +P + P T +GK+
Sbjct: 486 DEKYGEEIVAWVRLHPGHAASEE---ELREFCKARIAHFKVPRYFRFVDEFPMTVTGKVQ 542
Query: 221 RRVLRKVAVND 231
+ +R++++ +
Sbjct: 543 KFRMREISIEE 553
>gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase.
Members of this protein family are
cyclohexanecarboxylate-CoA ligase. This enzyme prepares
the aliphatic ring compound, cyclohexanecarboxylate, for
dehydrogenation and then degradation by a pathway also
used in benzoyl-CoA degradation in Rhodopseudomonas
palustris.
Length = 538
Score = 51.8 bits (124), Expect = 1e-07
Identities = 37/130 (28%), Positives = 60/130 (46%), Gaps = 17/130 (13%)
Query: 98 ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVV 157
A +D +GY+ + GR D++ G + V E+E L HP V++ A+V
Sbjct: 425 AFQDAEGYIRINGRSKDVIIRGGENIPV-------------VEIENLLYQHPAVAQVAIV 471
Query: 158 SRPHPVKGECLYCFITPAGGATFN-QELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRS 216
+ P GE + P G T + +V LK Q K+ +P+ ++ LP T +
Sbjct: 472 AYPDERLGERACAVVVPKPGCTLDFAAMVAFLKAQ---KVALQYIPERLEVVDALPATPA 528
Query: 217 GKIMRRVLRK 226
GKI + LR+
Sbjct: 529 GKIQKFRLRE 538
>gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of
siderophore-synthesizing nonribosomal peptide
synthetases (NRPS). The adenylation (A) domain of NRPS
recognizes a specific amino acid or hydroxy acid and
activates it as an (amino) acyl adenylate by hydrolysis
of ATP. The activated acyl moiety then forms a thioester
to the enzyme-bound cofactor phosphopantetheine of a
peptidyl carrier protein domain. This family of
siderophore-synthesizing NRPS includes the third
adenylation domain of SidN from the endophytic fungus
Neotyphodium lolii, ferrichrome siderophore synthetase,
HC-toxin synthetase, and enniatin synthase. NRPSs are
large multifunctional enzymes which synthesize many
therapeutically useful peptides. These natural products
include antibiotics, immunosuppressants, plant and
animal toxins, and enzyme inhibitors. NRPS has a
distinct modular structure in which each module is
responsible for the recognition, activation, and in some
cases, modification of a single amino acid residue of
the final peptide product. The modules can be subdivided
into domains that catalyze specific biochemical
reactions.
Length = 447
Score = 51.5 bits (124), Expect = 1e-07
Identities = 40/131 (30%), Positives = 57/131 (43%), Gaps = 17/131 (12%)
Query: 98 ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVV 157
R EDG L GR DD + + G + + E+EA L + P V AAVV
Sbjct: 331 VRYLEDGSLEFLGRKDDQVKIRGQRIEL-------------GEIEAVLRALPGVVVAAVV 377
Query: 158 -SRPHPVKGECLYCFITPAGGATFNQ--ELVKQLKQQVREKIGPFAMPDVIQHAPRLPKT 214
P G+ L F+ G A + L+ +RE++ + +P V LP T
Sbjct: 378 LLLDDP-GGKQLVAFLAVDGAAGGEPADVDIALLRSALRERLPSYMVPSVYVPLDELPLT 436
Query: 215 RSGKIMRRVLR 225
SGK+ R+ LR
Sbjct: 437 ASGKVDRKALR 447
>gnl|CDD|132249 TIGR03205, pimA, dicarboxylate--CoA ligase PimA. PimA, a member of
a large family of acyl-CoA ligases, is found in a
characteristic operon pimFABCDE for the metabolism of
pimelate and related compounds. It is found, so far, in
Bradyrhizobium japonicum and several strains of
Rhodopseudomonas palustris. PimA from R. palustris was
shown to be active as a CoA ligase for C(7) to C(14)
dicarboxylates and fatty acids.
Length = 541
Score = 51.5 bits (123), Expect = 1e-07
Identities = 34/126 (26%), Positives = 53/126 (42%), Gaps = 17/126 (13%)
Query: 101 DEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRP 160
D DGY ++ R DM+ G F Y +E + HP V E V+ P
Sbjct: 432 DTDGYFFLVDRKKDMIISGG-------FNVYPQM------IEQAIYEHPGVQEVIVIGIP 478
Query: 161 HPVKGECLYCFIT-PAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSGKI 219
+GE F+ G F+ + +L+ + K+G +P ++ LP+T GK+
Sbjct: 479 DQYRGEAAKAFVKLRPGAKPFS---LDELRAFLAGKLGKHELPVAVEFVDELPRTPVGKL 535
Query: 220 MRRVLR 225
R LR
Sbjct: 536 SRHELR 541
>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional.
Length = 5163
Score = 51.9 bits (124), Expect = 2e-07
Identities = 35/136 (25%), Positives = 61/136 (44%), Gaps = 17/136 (12%)
Query: 98 ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVV 157
AR DG + GR+D + + G + + E+EA L +HP V EA VV
Sbjct: 2389 ARYRADGVVEYLGRIDHQVKIRGFRIEL-------------GEIEARLQAHPAVREAVVV 2435
Query: 158 SRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSG 217
++ G+ L ++ P A +L+ +L+ + ++ + +P RLP +G
Sbjct: 2436 AQDGA-SGKQLVAYVVPDDAAE---DLLAELRAWLAARLPAYMVPAHWVVLERLPLNPNG 2491
Query: 218 KIMRRVLRKVAVNDRE 233
K+ R+ L K V+
Sbjct: 2492 KLDRKALPKPDVSQLR 2507
Score = 50.0 bits (119), Expect = 7e-07
Identities = 38/134 (28%), Positives = 62/134 (46%), Gaps = 19/134 (14%)
Query: 98 ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVV 157
AR DG + GRVD + + G + + E+EA L HP V EA V+
Sbjct: 4937 ARYRADGVIDYLGRVDHQVKIRGFRIEL-------------GEIEARLREHPAVREAVVI 4983
Query: 158 SRPHPVKGECLYCFITPAGGA-----TFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLP 212
++ V G+ L ++ P A EL +LK +RE++ + +P + R+P
Sbjct: 4984 AQEGAV-GKQLVGYVVPQDPALADADEAQAELRDELKAALRERLPEYMVPAHLVFLARMP 5042
Query: 213 KTRSGKIMRRVLRK 226
T +GK+ R+ L +
Sbjct: 5043 LTPNGKLDRKALPQ 5056
Score = 44.2 bits (104), Expect = 5e-05
Identities = 35/130 (26%), Positives = 58/130 (44%), Gaps = 20/130 (15%)
Query: 98 ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVV 157
AR DG + GRVD + + G + + E+EA L HP V EA V+
Sbjct: 3432 ARYRADGVIEYIGRVDHQVKIRGFRIEL-------------GEIEARLLEHPWVREAVVL 3478
Query: 158 SRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSG 217
+ V G L ++ P A +L + LK ++ + + +P + R+P T +G
Sbjct: 3479 A----VDGRQLVAYVVPEDEAG---DLREALKAHLKASLPEYMVPAHLLFLERMPLTPNG 3531
Query: 218 KIMRRVLRKV 227
K+ R+ L +
Sbjct: 3532 KLDRKALPRP 3541
Score = 41.5 bits (97), Expect = 4e-04
Identities = 37/140 (26%), Positives = 58/140 (41%), Gaps = 24/140 (17%)
Query: 98 ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVV 157
AR DG + GR+D + + G + + E+EA L HP V EAAV+
Sbjct: 894 ARYRADGVIEYAGRIDHQVKLRGLRIEL-------------GEIEARLLEHPWVREAAVL 940
Query: 158 SRPHPVKGECL--YCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTR 215
+ V G+ L Y + GG + LK + + + +P RLP T
Sbjct: 941 A----VDGKQLVGYVVLESEGGD-----WREALKAHLAASLPEYMVPAQWLALERLPLTP 991
Query: 216 SGKIMRRVLRKVAVNDREVG 235
+GK+ R+ L + + G
Sbjct: 992 NGKLDRKALPAPEASVAQQG 1011
>gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase. This model
represents an enzyme, O-succinylbenzoate-CoA ligase,
which is involved in the fourth step of the menaquinone
biosynthesis pathway. O-succinylbenzoate-CoA ligase,
together with menB - naphtoate synthase, take
2-succinylbenzoate and convert it into 1,4-di-hydroxy-2-
naphtoate [Biosynthesis of cofactors, prosthetic groups,
and carriers, Menaquinone and ubiquinone].
Length = 436
Score = 50.9 bits (122), Expect = 2e-07
Identities = 37/129 (28%), Positives = 57/129 (44%), Gaps = 22/129 (17%)
Query: 98 ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGS--YCSTAKVFTEVEACLASHPDVSEAA 155
D +G+L+V GR DD++ +SG G Y E+E L HP + EA
Sbjct: 328 GELDGEGFLYVLGRRDDLI-ISG--------GENIYPE------EIETVLYQHPGIQEAV 372
Query: 156 VVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTR 215
VV +P G+ +I + +Q +L + EK+ + +P + LP
Sbjct: 373 VVPKPDAEWGQVPVAYIV--SESDISQA---KLIAYLTEKLAKYKVPIAFEKLDELPYNA 427
Query: 216 SGKIMRRVL 224
SGKI+R L
Sbjct: 428 SGKILRNQL 436
>gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated.
Length = 559
Score = 50.6 bits (122), Expect = 3e-07
Identities = 36/134 (26%), Positives = 59/134 (44%), Gaps = 26/134 (19%)
Query: 101 DEDGYLWVTGRVDDML-----NVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAA 155
DE+GY+ + GR+ DM+ N+ E+E L +HP + +
Sbjct: 438 DEEGYVNIVGRIKDMIIRGGENIYPR------------------EIEEFLYTHPKIQDVQ 479
Query: 156 VVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTR 215
VV P GE + +I GAT +E V+ R KI + +P I+ P T
Sbjct: 480 VVGVPDEKYGEEVCAWIILRPGATLTEEDVRDF---CRGKIAHYKIPRYIRFVDEFPMTV 536
Query: 216 SGKIMRRVLRKVAV 229
+GKI + +R++ +
Sbjct: 537 TGKIQKFKMREMMI 550
>gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed.
Length = 547
Score = 50.1 bits (120), Expect = 5e-07
Identities = 42/130 (32%), Positives = 63/130 (48%), Gaps = 18/130 (13%)
Query: 99 RRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVS 158
R DE GY+ +TGR D++ V G G S+ EVE L HP + +A VV+
Sbjct: 419 RMDEAGYIKITGRKKDII-VRG--------GENISS----REVEDILLQHPKIHDACVVA 465
Query: 159 RPHPVKGE--CLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRS 216
P GE C Y + + +E+V R+++ + P+ I +LP+T S
Sbjct: 466 MPDERLGERSCAYVVLKAPHHSLTLEEVVAFFS---RKRVAKYKYPEHIVVIDKLPRTAS 522
Query: 217 GKIMRRVLRK 226
GKI + +LRK
Sbjct: 523 GKIQKFLLRK 532
>gnl|CDD|236400 PRK09188, PRK09188, serine/threonine protein kinase; Provisional.
Length = 365
Score = 49.8 bits (119), Expect = 5e-07
Identities = 29/102 (28%), Positives = 42/102 (41%), Gaps = 6/102 (5%)
Query: 143 ACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMP 202
A L S P VS+ A+ P KG LY F+ A K L+ ++ P P
Sbjct: 247 AALKSDPAVSDVAIALFSLPAKGVGLYAFVEAELPAD-----EKSLRARLAGAKPPKP-P 300
Query: 203 DVIQHAPRLPKTRSGKIMRRVLRKVAVNDREVGDKSTLADED 244
+ IQ LP+ G + +LR +A+N + D E
Sbjct: 301 EHIQPVAALPRDADGTVRDDILRLIAMNQIDELDDLLREPEI 342
>gnl|CDD|215552 PLN03051, PLN03051, acyl-activating enzyme; Provisional.
Length = 499
Score = 49.8 bits (119), Expect = 5e-07
Identities = 38/129 (29%), Positives = 58/129 (44%), Gaps = 20/129 (15%)
Query: 104 GYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVE-ACLASHPDVSEAAVVSRPHP 162
GY V GR DD +N+ G T+ V E+E AC + ++E A V P
Sbjct: 371 GYFCVQGRADDTMNLGG-----------IKTSSV--EIERACDRAVAGIAETAAVGVAPP 417
Query: 163 VKG-ECLYCFITPAG-GATFNQ----ELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRS 216
G E L F+ F+Q L K+ ++ ++ + P ++ P LP+ S
Sbjct: 418 DGGPELLVIFLVLGEEKKGFDQARPEALQKKFQEAIQTNLNPLFKVSRVKIVPELPRNAS 477
Query: 217 GKIMRRVLR 225
K++RRVLR
Sbjct: 478 NKLLRRVLR 486
>gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated.
Length = 504
Score = 49.5 bits (119), Expect = 7e-07
Identities = 39/128 (30%), Positives = 58/128 (45%), Gaps = 18/128 (14%)
Query: 99 RRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVS 158
+ DE GY+ + GR D L +SG VY K EVE + P V E+AV+
Sbjct: 386 KIDERGYVHIVGRGKD-LIISGGY-NVY--------PK---EVEGEIDELPGVVESAVIG 432
Query: 159 RPHPVKGECLYCFITPAGGATFN-QELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSG 217
PHP GE + + P GA + ++ LK + + F P + LP+ G
Sbjct: 433 VPHPDFGEGVTAVVVPKPGAALDEAAILAALKGR----LARFKQPKRVFFVDELPRNTMG 488
Query: 218 KIMRRVLR 225
K+ + +LR
Sbjct: 489 KVQKNLLR 496
>gnl|CDD|236019 PRK07445, PRK07445, O-succinylbenzoic acid--CoA ligase; Reviewed.
Length = 452
Score = 49.2 bits (118), Expect = 7e-07
Identities = 35/136 (25%), Positives = 61/136 (44%), Gaps = 19/136 (13%)
Query: 101 DEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVF-TEVEACLASHPDVSEAAVVSR 159
D GYL + GR + ++G G V+ EVEA + + V + V+
Sbjct: 335 DAQGYLHILGRNSQKI-ITG--------GE-----NVYPAEVEAAILATGLVQDVCVLGL 380
Query: 160 PHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSGKI 219
P P GE + P + +++LK +++++ PF P P+LP+ GKI
Sbjct: 381 PDPHWGEVVTAIYVPKDPSIS----LEELKTAIKDQLSPFKQPKHWIPVPQLPRNPQGKI 436
Query: 220 MRRVLRKVAVNDREVG 235
R+ L+++AV +
Sbjct: 437 NRQQLQQIAVQRLGLP 452
>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional.
Length = 3956
Score = 49.8 bits (119), Expect = 7e-07
Identities = 37/131 (28%), Positives = 61/131 (46%), Gaps = 16/131 (12%)
Query: 98 ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVV 157
AR DG + GR+D + + G + + E+EA L + P V EA V+
Sbjct: 898 ARYRADGVIEYLGRMDHQVKIRGFRIEL-------------GEIEARLLAQPGVREAVVL 944
Query: 158 SRPHPVKGECLYCFITPAGGA--TFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTR 215
++P G L ++ PA A +Q +LK Q+R+ + + +P + LP T
Sbjct: 945 AQPG-DAGLQLVAYLVPAAVADGAEHQATRDELKAQLRQVLPDYMVPAHLLLLDSLPLTP 1003
Query: 216 SGKIMRRVLRK 226
+GK+ R+ L K
Sbjct: 1004 NGKLDRKALPK 1014
Score = 46.3 bits (110), Expect = 1e-05
Identities = 30/136 (22%), Positives = 54/136 (39%), Gaps = 17/136 (12%)
Query: 98 ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVV 157
AR DG + GR+D + + G + + E+EA L HP V EA V+
Sbjct: 3479 ARYRADGVIEYLGRIDHQVKIRGFRIEL-------------GEIEARLLQHPSVREAVVL 3525
Query: 158 SRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSG 217
+R G+ L ++ P A + + L+ + + + +P + +P +G
Sbjct: 3526 ARDGA-GGKQLVAYVVP---ADPQGDWRETLRDHLAASLPDYMVPAQLLVLAAMPLGPNG 3581
Query: 218 KIMRRVLRKVAVNDRE 233
K+ R+ L
Sbjct: 3582 KVDRKALPDPDAKGSR 3597
Score = 39.4 bits (92), Expect = 0.001
Identities = 30/132 (22%), Positives = 53/132 (40%), Gaps = 19/132 (14%)
Query: 98 ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVV 157
AR DG + GR+D + + G + + E+EA L V EA V+
Sbjct: 1962 ARYRADGVIEYLGRIDHQVKIRGFRIEL-------------GEIEARLREQGGVREAVVI 2008
Query: 158 SRPHPVKGECLYCFITPAG-----GATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLP 212
++ G+ L ++ P L LK ++ + + +P + R+P
Sbjct: 2009 AQDGA-NGKQLVAYVVPTDPGLVDDDEAQVALRAILKNHLKASLPEYMVPAHLVFLARMP 2067
Query: 213 KTRSGKIMRRVL 224
T +GK+ R+ L
Sbjct: 2068 LTPNGKLDRKAL 2079
>gnl|CDD|180374 PRK06060, PRK06060, acyl-CoA synthetase; Validated.
Length = 705
Score = 48.1 bits (114), Expect = 2e-06
Identities = 26/86 (30%), Positives = 43/86 (50%)
Query: 140 EVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPF 199
EVE + V+EAAVV+ L F+ GAT + +++ L + + ++ F
Sbjct: 402 EVERLIIEDEAVAEAAVVAVRESTGASTLQAFLVATSGATIDGSVMRDLHRGLLNRLSAF 461
Query: 200 AMPDVIQHAPRLPKTRSGKIMRRVLR 225
+P RLP+T +GK++R LR
Sbjct: 462 KVPHRFAVVDRLPRTPNGKLVRGALR 487
>gnl|CDD|240325 PTZ00237, PTZ00237, acetyl-CoA synthetase; Provisional.
Length = 647
Score = 47.4 bits (113), Expect = 3e-06
Identities = 37/143 (25%), Positives = 60/143 (41%), Gaps = 32/143 (22%)
Query: 100 RDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKV-FTEVEACLASHPDVSEAAVVS 158
+DE+GY + R DD + +SG+ KV +E + HP V E +
Sbjct: 502 KDENGYYTIVSRSDDQIKISGN--------------KVQLNTIETSILKHPLVLECCSIG 547
Query: 159 RPHPVKGECLYCFITPAGGATFNQEL------VKQLKQQVRE----KIGPFAMPDVIQHA 208
P C+ P G Q+ + +LK ++ I A+ I
Sbjct: 548 IYDPD------CYNVPIGLLVLKQDQSNQSIDLNKLKNEINNIITQDIESLAVLRKIIIV 601
Query: 209 PRLPKTRSGKIMRRVLRKVAVND 231
+LPKT++GKI R+++ K +ND
Sbjct: 602 NQLPKTKTGKIPRQIISKF-LND 623
>gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a
family of nonribosomal peptide synthetases (NRPSs)
synthesizing toxins and antitumor agents. The
adenylation (A) domain of NRPS recognizes a specific
amino acid or hydroxy acid and activates it as an
(amino)-acyl adenylate by hydrolysis of ATP. The
activated acyl moiety then forms a thioester to the
enzyme-bound cofactor phosphopantetheine of a peptidyl
carrier protein domain. This family includes NRPSs that
synthesize toxins and antitumor agents; for example,
TubE for Tubulysine, CrpA for cryptophycin, TdiA for
terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for
Valinomycin. Nonribosomal peptide synthetases are large
multifunctional enzymes which synthesize many
therapeutically useful peptides. NRPS has a distinct
modular structure in which each module is responsible
for the recognition, activation, and, in some cases,
modification of a single amino acid residue of the final
peptide product. The modules can be subdivided into
domains that catalyze specific biochemical reactions.
Length = 560
Score = 46.5 bits (111), Expect = 6e-06
Identities = 37/130 (28%), Positives = 54/130 (41%), Gaps = 21/130 (16%)
Query: 103 DGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDV---SEAAVVSR 159
DG L +TGR DM+ ++G V ++ ++ E+EA + P V AA R
Sbjct: 441 DGRLTITGREKDMIIING----VNYY-NH--------EIEAAVEQVPGVEPSFTAACAVR 487
Query: 160 PHPVKGECLYCFITPAGGATFNQ-ELVKQLKQQVREKIGPFAMPDVIQHAPR--LPKTRS 216
+ L F P L++ ++ V KIG P + + PKT
Sbjct: 488 DAGSGTDELAVFFVPRYDLDDRLAALLRAIRTHVARKIG--IAPAYVIPLAKEDFPKTSL 545
Query: 217 GKIMRRVLRK 226
GKI R LRK
Sbjct: 546 GKIQRAQLRK 555
>gnl|CDD|180293 PRK05857, PRK05857, acyl-CoA synthetase; Validated.
Length = 540
Score = 43.8 bits (103), Expect = 4e-05
Identities = 36/140 (25%), Positives = 56/140 (40%), Gaps = 23/140 (16%)
Query: 89 NNSDLLLSSARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASH 148
N DLL R EDG+ ++ GR +M+ + G + EV+
Sbjct: 405 NTGDLL----ERREDGFFYIKGRSSEMI-ICGGVNIAP------------DEVDRIAEGV 447
Query: 149 PDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQV----REKIGPFAMPDV 204
V EAA P G + + + A ++ + LK + R + P A P
Sbjct: 448 SGVREAACYEIPDEEFGALVGLAVVAS--AELDESAARALKHTIAARFRRESEPMARPST 505
Query: 205 IQHAPRLPKTRSGKIMRRVL 224
I +P+T+SGK+MR L
Sbjct: 506 IVIVTDIPRTQSGKVMRASL 525
>gnl|CDD|235908 PRK07008, PRK07008, long-chain-fatty-acid--CoA ligase; Validated.
Length = 539
Score = 43.9 bits (104), Expect = 4e-05
Identities = 33/125 (26%), Positives = 57/125 (45%), Gaps = 16/125 (12%)
Query: 101 DEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRP 160
D DG++ +T R D++ SG G + S+ ++E +HP V+EAA ++
Sbjct: 420 DADGFMQITDRSKDVIK-SG--------GEWISS----IDIENVAVAHPAVAEAACIACA 466
Query: 161 HPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSGKIM 220
HP E + GA +E +L K+ + +PD + +P T +GK+
Sbjct: 467 HPKWDERPLLVVVKRPGAEVTRE---ELLAFYEGKVAKWWIPDDVVFVDAIPHTATGKLQ 523
Query: 221 RRVLR 225
+ LR
Sbjct: 524 KLKLR 528
>gnl|CDD|235722 PRK06164, PRK06164, acyl-CoA synthetase; Validated.
Length = 540
Score = 43.6 bits (103), Expect = 5e-05
Identities = 27/92 (29%), Positives = 40/92 (43%), Gaps = 7/92 (7%)
Query: 140 EVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPF 199
E+E L + P V+ A VV K F+ P GA+ ++ L RE + F
Sbjct: 443 EIEHALEALPGVAAAQVVGATRDGKTVP-VAFVIPTDGASPDEA---GLMAACREALAGF 498
Query: 200 AMPDVIQHAPRLPKTRSG---KIMRRVLRKVA 228
+P +Q P T S KI + LR++A
Sbjct: 499 KVPARVQVVEAFPVTESANGAKIQKHRLREMA 530
>gnl|CDD|233550 TIGR01733, AA-adenyl-dom, amino acid adenylation domain. This
model represents a domain responsible for the specific
recognition of amino acids and activation as adenylyl
amino acids. The reaction catalyzed is aa + ATP ->
aa-AMP + PPi. These domains are usually found as
components of multi-domain non-ribosomal peptide
synthetases and are usually called "A-domains" in that
context (for a review, see ). A-domains are almost
invariably followed by "T-domains" (thiolation domains,
pfam00550) to which the amino acid adenylate is
transferred as a thiol-ester to a bound pantetheine
cofactor with the release of AMP (these are also called
peptide carrier proteins, or PCPs. When the A-domain
does not represent the first module (corresponding to
the first amino acid in the product molecule) it is
usually preceded by a "C-domain" (condensation domain,
pfam00668) which catalyzes the ligation of two amino
acid thiol-esters from neighboring modules. This domain
is a subset of the AMP-binding domain found in Pfam
(pfam00501) which also hits substrate--CoA ligases and
luciferases. Sequences scoring in between trusted and
noise for this model may be ambiguous as to whether they
activate amino acids or other molecules lacking an alpha
amino group.
Length = 409
Score = 43.0 bits (102), Expect = 7e-05
Identities = 20/62 (32%), Positives = 25/62 (40%), Gaps = 19/62 (30%)
Query: 98 ARRDEDGYLWVTGRVDDMLNVSGH---LMTVYFFGSYCSTAKVFTEVEACLASHPDVSEA 154
R DG L GR+DD + + G+ L E+EA L HP V EA
Sbjct: 364 VRYLPDGNLEFLGRIDDQVKIRGYRIEL----------------GEIEAALLRHPGVREA 407
Query: 155 AV 156
V
Sbjct: 408 VV 409
>gnl|CDD|213290 cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL). CBAL catalyzes
the conversion of 4-chlorobenzoate (4-CB) to
4-chlorobenzoyl-coenzyme A (4-CB-CoA) by the two-step
adenylation and thioester-forming reactions.
4-Chlorobenzoate (4-CBA) is an environmental pollutant
derived from microbial breakdown of aromatic pollutants,
such as polychlorinated biphenyls (PCBs), DDT, and
certain herbicides. The 4-CBA degrading pathway converts
4-CBA to the metabolite 4-hydroxybezoate (4-HBA),
allowing some soil-dwelling microbes to utilize 4-CBA as
an alternate carbon source. This pathway consists of
three chemical steps catalyzed by 4-CBA-CoA ligase,
4-CBA-CoA dehalogenase, and 4HBA-CoA thioesterase in
sequential reactions.
Length = 495
Score = 42.9 bits (101), Expect = 8e-05
Identities = 31/124 (25%), Positives = 48/124 (38%), Gaps = 15/124 (12%)
Query: 101 DEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRP 160
D G + + GRVDDM+ G + +EVE L P V+E V+ P
Sbjct: 387 DPSGTVRILGRVDDMIISGGENIHP-------------SEVERVLGRAPGVTEVVVIGLP 433
Query: 161 HPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSGKIM 220
G+ + + P G T + + + ++ F P LPK K++
Sbjct: 434 DERWGQSVTACVVPREGETLSADALDTF--CRASELADFKRPRRYFFLDELPKNAMNKVL 491
Query: 221 RRVL 224
RR L
Sbjct: 492 RRQL 495
>gnl|CDD|131425 TIGR02372, 4_coum_CoA_lig, 4-coumarate--CoA ligase, photoactive
yellow protein activation family. This model represents
the 4-coumarate--CoA ligase associated with biosynthesis
of the 4-hydroxy cinnamyl (also called 4-coumaroyl)
chromophore covalently linked to a Cys residue in
photoactive yellow protein of Rhodobacter spp. and
Ectothiorhodospira halophila. This enzyme is designated
6.2.1.12 and therefore joins a number of plant enzymes
linked to lignin biosynthesis and given similar names.
Length = 386
Score = 42.2 bits (99), Expect = 1e-04
Identities = 36/126 (28%), Positives = 48/126 (38%), Gaps = 19/126 (15%)
Query: 94 LLSSARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSE 153
L D+DG + GR D++L V G S V L +P V
Sbjct: 279 LQDRLAWDKDGGFTILGRKDEILQVG---------GVNVSPG----HVRDILERNPRVRA 325
Query: 154 AAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPK 213
AAV R G L FI A A EL +L+ + A PD + LP+
Sbjct: 326 AAV--RLD---GRRLKAFIVVAEDAD-EAELEIELRATAARHLPAPARPDRFRFGTELPR 379
Query: 214 TRSGKI 219
T +GK+
Sbjct: 380 TGAGKL 385
>gnl|CDD|213277 cd05909, AAS_C, C-terminal domain of the acyl-acyl carrier protein
synthetase (also called 2-acylglycerophosphoethanolamine
acyltransferase, Aas). Acyl-acyl carrier protein
synthase (Aas) is a membrane protein responsible for a
minor pathway of incorporating exogenous fatty acids
into membrane phospholipids. Its in vitro activity is
characterized by the ligation of free fatty acids
between 8 and 18 carbons in length to the acyl carrier
protein sulfydryl group (ACP-SH) in the presence of ATP
and Mg2+. However, its in vivo function is as a
2-acylglycerophosphoethanolamine (2-acyl-GPE)
acyltransferase. The reaction occurs in two steps: the
acyl chain is first esterified to acyl carrier protein
(ACP) via a thioester bond, followed by a second step
where the acyl chain is transferred to a
2-acyllysophospholipid, thus completing the
transacylation reaction. This model represents the
C-terminal domain of the enzyme, which belongs to the
class I adenylate-forming enzyme family, including
acyl-CoA synthetases.
Length = 489
Score = 42.2 bits (100), Expect = 1e-04
Identities = 36/133 (27%), Positives = 56/133 (42%), Gaps = 21/133 (15%)
Query: 98 ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASH-PDVSEAAV 156
+ DEDG+L + GR+ + G ++++ T VE L+ P+ S A
Sbjct: 376 GKIDEDGFLTIVGRLKRFAKIGGEMVSL-------------TAVEELLSEILPEDSLHAA 422
Query: 157 VSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREK-IGPFAMPDVIQHAPRLPKTR 215
V P KGE + T ++L +RE + A+P I H +P
Sbjct: 423 VEVPDEKKGEKIVLLTTTEDLD------PEELNAILREAGLPNLAVPRKILHVDEIPLLG 476
Query: 216 SGKIMRRVLRKVA 228
SGK R L+K+A
Sbjct: 477 SGKTDYRGLKKLA 489
>gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL). FAAL belongs to the
class I adenylate forming enzyme family and is
homologous to fatty acyl-coenzyme A (CoA) ligases
(FACLs). However, FAALs produce only the acyl adenylate
and are unable to perform the thioester-forming
reaction, while FACLs perform a two-step catalytic
reaction; AMP ligation followed by CoA ligation using
ATP and CoA as cofactors. FAALs have insertion motifs
between the N-terminal and C-terminal subdomains that
distinguish them from the FACLs. This insertion motif
precludes the binding of CoA, thus preventing CoA
ligation. It has been suggested that the acyl adenylates
serve as substrates for multifunctional polyketide
synthases to permit synthesis of complex lipids such as
phthiocerol dimycocerosate, sulfolipids, mycolic acids,
and mycobactin.
Length = 547
Score = 42.2 bits (100), Expect = 2e-04
Identities = 36/129 (27%), Positives = 55/129 (42%), Gaps = 19/129 (14%)
Query: 103 DGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACL-ASHPDVSEAAVVSRPH 161
DG L+VTGR+ D++ + G Y ++EA + +HP + A +
Sbjct: 429 DGELYVTGRLKDLIIIRGR--NHY-----------PQDIEATVERAHPALRPGAAAAFSV 475
Query: 162 PVKGE---CLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPR-LPKTRSG 217
GE + + G L + ++ V + G A DV+ P LPKT SG
Sbjct: 476 DGDGEERLVVVAEVRRRGLPADLAALAEAIRAAVAREHG-VAPADVVLVRPGTLPKTSSG 534
Query: 218 KIMRRVLRK 226
KI RR R+
Sbjct: 535 KIQRRACRE 543
>gnl|CDD|236217 PRK08279, PRK08279, long-chain-acyl-CoA synthetase; Validated.
Length = 600
Score = 39.5 bits (93), Expect = 0.001
Identities = 42/155 (27%), Positives = 60/155 (38%), Gaps = 33/155 (21%)
Query: 89 NNSDLLLSSARRDEDGYLWVTGRVDDML-----NVSGHLMTVYFFGSYCSTAKVFTEVEA 143
N DL+ R D G+ R+ D NV+ T TEVE
Sbjct: 442 NTGDLM----RDDGFGHAQFVDRLGDTFRWKGENVA--------------T----TEVEN 479
Query: 144 CLASHPDVSEAAV--VSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAM 201
L+ P V EA V V P G I A GA F+ + L + E++ +A+
Sbjct: 480 ALSGFPGVEEAVVYGVEVPG-TDGRAGMAAIVLADGAEFD---LAALAAHLYERLPAYAV 535
Query: 202 PDVIQHAPRLPKTRSGKIMRRVLRKVAVNDREVGD 236
P ++ P L T + K + LRK + +V D
Sbjct: 536 PLFVRLVPELETTGTFKYRKVDLRKEGFDPSKVDD 570
>gnl|CDD|236668 PRK10252, entF, enterobactin synthase subunit F; Provisional.
Length = 1296
Score = 38.1 bits (89), Expect = 0.004
Identities = 30/133 (22%), Positives = 55/133 (41%), Gaps = 22/133 (16%)
Query: 98 ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVV 157
AR +DG + GR DD L + G + + E++ + + PDV +A
Sbjct: 845 ARWLDDGAVEYLGRSDDQLKIRGQRIEL-------------GEIDRAMQALPDVEQAVTH 891
Query: 158 SR------PHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRL 211
+ L ++ G + L+ Q+RE++ P +P V+ +L
Sbjct: 892 ACVINQAAATGGDARQLVGYLVSQSGLPLDTSA---LQAQLRERLPPHMVPVVLLQLDQL 948
Query: 212 PKTRSGKIMRRVL 224
P + +GK+ R+ L
Sbjct: 949 PLSANGKLDRKAL 961
>gnl|CDD|215464 PLN02860, PLN02860, o-succinylbenzoate-CoA ligase.
Length = 563
Score = 36.7 bits (85), Expect = 0.009
Identities = 38/142 (26%), Positives = 54/142 (38%), Gaps = 32/142 (22%)
Query: 101 DEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRP 160
D+ G LW+ GR +D + G VY EVEA L+ HP V+ VV P
Sbjct: 425 DKAGNLWLIGRSNDRIKTGGE--NVYP-----------EEVEAVLSQHPGVASVVVVGVP 471
Query: 161 HPVKGECLYCFI--------------TPAGGATFNQELVKQLKQQVREK-IGPFAMPD-V 204
E + + T + E L+ REK + F +P
Sbjct: 472 DSRLTEMVVACVRLRDGWIWSDNEKENAKKNLTLSSET---LRHHCREKNLSRFKIPKLF 528
Query: 205 IQHAPRLPKTRSGKIMRRVLRK 226
+Q P T +GKI R +R+
Sbjct: 529 VQWRKPFPLTTTGKIRRDEVRR 550
>gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and
Bubblegum-like very long-chain fatty acid CoA
synthetases. This family includes long-chain fatty acid
(C12-C20) CoA synthetases and Bubblegum-like very
long-chain (>C20) fatty acid CoA synthetases. FACS
catalyzes the formation of fatty acyl-CoA in a two-step
reaction: the formation of a fatty acyl-AMP molecule as
an intermediate, and the formation of a fatty acyl-CoA.
Eukaryotes generally have multiple isoforms of LC-FACS
genes with multiple splice variants. For example, nine
genes are found in Arabidopsis and six genes are
expressed in mammalian cells. Drosophila melanogaster
mutant bubblegum (BGM) have elevated levels of
very-long-chain fatty acids (VLCFA) caused by a
defective gene later named bubblegum. The human homolog
(hsBG) of bubblegum has been characterized as a very
long chain fatty acid CoA synthetase that functions
specifically in the brain; hsBG may play a central role
in brain VLCFA metabolism and myelinogenesis. Free fatty
acids must be "activated" to their CoA thioesters before
participating in most catabolic and anabolic reactions.
Length = 456
Score = 36.7 bits (86), Expect = 0.010
Identities = 33/155 (21%), Positives = 55/155 (35%), Gaps = 47/155 (30%)
Query: 99 RRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVV- 157
R DEDG+L +T R D++ +G G + +E L + P +S+A VV
Sbjct: 320 RLDEDGFLVITDRKKDLIVTAG--------GKNIAPQ----PIENALKASPYISQAVVVG 367
Query: 158 -SRPHPVKGECLYCFITP----------AGGATFN--QELVK--QLKQQVR--------- 193
RP+ I G F +L + +++ +R
Sbjct: 368 DDRPYLT------ALIVLDPEALEKWAEQHGLPFTTYADLAEDPEVRALIRKEVEEANAR 421
Query: 194 ----EKIGPFAMPDVIQHAPRLPKTRSGKIMRRVL 224
E+I F + T + K+ RRV+
Sbjct: 422 LARVEQIKKFVLLPKEFSIEDGELTPTMKLRRRVV 456
>gnl|CDD|235865 PRK06814, PRK06814, acylglycerophosphoethanolamine acyltransferase;
Provisional.
Length = 1140
Score = 35.7 bits (83), Expect = 0.023
Identities = 27/121 (22%), Positives = 45/121 (37%), Gaps = 22/121 (18%)
Query: 101 DEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASH--PDVSEAAVVS 158
DE+G++ + GR ++G ++++ VE LA+ PD + A VS
Sbjct: 1021 DEEGFITIKGRAKRFAKIAGEMISL-------------AAVEE-LAAELWPD-ALHAAVS 1065
Query: 159 RPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSGK 218
P KGE + T + + K +P I +P +GK
Sbjct: 1066 IPDARKGERIILLTTASDAT--RAAFLAHAKAA---GASELMVPAEIITIDEIPLLGTGK 1120
Query: 219 I 219
I
Sbjct: 1121 I 1121
>gnl|CDD|213303 cd05937, FATP_chFAT1_like, Uncharacterized subfamily of
bifunctional fatty acid transporter/very-long-chain
acyl-CoA synthetase in fungi. Fatty acid transport
protein (FATP) transports long-chain or very-long-chain
fatty acids across the plasma membrane. FATPs also have
fatty acid CoA synthetase activity, thus playing dual
roles as fatty acid transporters and its activation
enzymes. FATPs are the key players in the trafficking of
exogenous fatty acids into the cell and in intracellular
fatty acid homeostasis. Members of this family are
fungal FATPs, including FAT1 from Cochliobolus
heterostrophus.
Length = 468
Score = 34.7 bits (80), Expect = 0.036
Identities = 33/133 (24%), Positives = 55/133 (41%), Gaps = 21/133 (15%)
Query: 99 RRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAV-- 156
R+D DG + R+ D T + ST EV L + P V+EA V
Sbjct: 347 RQDADGRWYFLDRLGD---------TFRWKSENVST----GEVADVLGAIPSVAEANVYG 393
Query: 157 VSRP-HPVKGECLYCFITP--AGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPK 213
V P + + C + A F + L+ +L R+++ +A+P ++ +
Sbjct: 394 VKVPGYDGRAGCAAITLEESSAVETEFTKNLLAKLA---RKRLPSYAVPLFLRLTEEVAT 450
Query: 214 TRSGKIMRRVLRK 226
T + K + VLRK
Sbjct: 451 TGNHKQQKGVLRK 463
>gnl|CDD|224450 COG1533, SplB, DNA repair photolyase [DNA replication,
recombination, and repair].
Length = 297
Score = 34.3 bits (79), Expect = 0.043
Identities = 24/105 (22%), Positives = 42/105 (40%), Gaps = 16/105 (15%)
Query: 167 CLYCFITPAGGATFNQE--------LVKQLKQQVRE---KIGPFAMPDVIQHAPRLPKTR 215
C+YC+ P G L++ L++++R+ K A+ V P P +
Sbjct: 43 CIYCYARPMHGYLPKSPTKVNVKENLLELLERELRKPGPKRTVIAISSV--TDPYQPIEK 100
Query: 216 SGKIMRRVLRKVAVNDREVG--DKSTLADEDVVDELFQNRPEGNV 258
++ R++L + V KS L D +D L + G V
Sbjct: 101 EYRLTRKILEILLKYGFPVSIVTKSALVLRD-LDLLLELAERGKV 144
>gnl|CDD|180167 PRK05620, PRK05620, long-chain-fatty-acid--CoA ligase; Validated.
Length = 576
Score = 34.0 bits (78), Expect = 0.071
Identities = 31/125 (24%), Positives = 58/125 (46%), Gaps = 13/125 (10%)
Query: 102 EDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPH 161
DG+L + R D++ SG G + +A ++E + + P+V E AV+ P
Sbjct: 442 RDGFLTIHDRARDVIR-SG--------GEWIYSA----QLENYIMAAPEVVECAVIGYPD 488
Query: 162 PVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSGKIMR 221
GE A G +E ++L+ Q+R+++ + +P+ + KT GK +
Sbjct: 489 DKWGERPLAVTVLAPGIEPTRETAERLRDQLRDRLPNWMLPEYWTFVDEIDKTSVGKFDK 548
Query: 222 RVLRK 226
+ LR+
Sbjct: 549 KDLRQ 553
>gnl|CDD|213305 cd05939, hsFATP4_like, Fatty acid transport proteins (FATP),
including FATP4 and FATP1, and similar proteins. Fatty
acid transport protein (FATP) transports long-chain or
very-long-chain fatty acids across the plasma membrane.
At least five copies of FATPs are identified in
mammalian cells. This family includes FATP4, FATP1, and
homologous proteins. Each FATP has unique patterns of
tissue distribution. FATP4 is mainly expressed in the
brain, testis, colon and kidney. FATPs also have fatty
acid CoA synthetase activity, thus playing dual roles as
fatty acid transporters and its activation enzymes.
FATPs are the key players in the trafficking of
exogenous fatty acids into the cell and in intracellular
fatty acid homeostasis.
Length = 474
Score = 33.9 bits (78), Expect = 0.073
Identities = 32/134 (23%), Positives = 52/134 (38%), Gaps = 20/134 (14%)
Query: 100 RDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAV--V 157
DE GYL+ R D T + G ST TEVE L++ + + V V
Sbjct: 359 MDELGYLYFKDRTGD---------TFRWKGENVST----TEVEGILSNVLGLEDVVVYGV 405
Query: 158 SRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSG 217
P V+G I + + + + + P+A P I+ P + KT +
Sbjct: 406 EVPG-VEGRAGMAAIVDPERKVD----LDRFSAVLAKSLPPYARPQFIRLLPEVDKTGTF 460
Query: 218 KIMRRVLRKVAVND 231
K+ + L+K +
Sbjct: 461 KLQKTDLQKEGYDP 474
>gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid
metabolism].
Length = 613
Score = 33.1 bits (76), Expect = 0.13
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 12/57 (21%)
Query: 101 DEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVV 157
DEDGYL +TGR +++ +S G + +E+ LA P + + VV
Sbjct: 460 DEDGYLVITGRKKELIKLSN--------GKNIAPEP----IESKLAKSPLIEQICVV 504
>gnl|CDD|213282 cd05914, FACL_like_3, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 448
Score = 33.0 bits (76), Expect = 0.16
Identities = 25/95 (26%), Positives = 42/95 (44%), Gaps = 24/95 (25%)
Query: 101 DEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTE-VEACLASHPDVSEAAVV-- 157
DE+GYL++ GR +++ S FG V E VE+ L P +++A V
Sbjct: 337 DEEGYLYINGRKKNLIITS--------FGR-----NVSPEWVESELQQAPAIAQAVVFGD 383
Query: 158 SRPHPVKGECLYCFITPAGGATFNQELVKQLKQQV 192
++P L I PA + + ++ QQ+
Sbjct: 384 AQPF------LVALIVPA--PNISDDQLEAAVQQI 410
>gnl|CDD|213278 cd05910, FACL_like_1, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 455
Score = 32.3 bits (74), Expect = 0.25
Identities = 16/58 (27%), Positives = 22/58 (37%), Gaps = 15/58 (25%)
Query: 101 DEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTE-VEACLASHPDVSEAAVV 157
D+ G LW GR + +G +FT VE HP V +A+V
Sbjct: 341 DDQGRLWFCGRKAHRVETAG--------------GTLFTVPVEQVFNRHPGVRRSALV 384
>gnl|CDD|213276 cd05908, A_NRPS_MycA_like, The adenylation domain of nonribosomal
peptide synthetases (NRPS) similar to mycosubtilin
synthase subunit A (MycA). The adenylation (A) domain
of NRPS recognizes a specific amino acid or hydroxy acid
and activates it as (amino)-acyl adenylate by hydrolysis
of ATP. The activated acyl moiety then forms thioester
to the enzyme-bound cofactor phosphopantetheine of a
peptidyl carrier protein domain. This family includes
NRPS similar to mycosubtilin synthase subunit A (MycA).
Mycosubtilin, which is characterized by a beta-amino
fatty acid moiety linked to the circular heptapeptide
Asn-Tyr-Asn-Gln-Pro-Ser-Asn, belongs to the iturin
family of lipopeptide antibiotics. The mycosubtilin
synthase subunit A (MycA) combines functional domains
derived from peptide synthetases, amino transferases,
and fatty acid synthases. Nonribosomal peptide
synthetases are large multifunction enzymes that
synthesize many therapeutically useful peptides. NRPS
has a distinct modular structure in which each module is
responsible for the recognition, activation, and, in
some cases, modification of a single amino acid residue
of the final peptide product. The modules can be
subdivided into domains that catalyze specific
biochemical reactions.
Length = 499
Score = 32.2 bits (74), Expect = 0.26
Identities = 30/129 (23%), Positives = 51/129 (39%), Gaps = 20/129 (15%)
Query: 102 EDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVS--- 158
+G L +TGR D++ V+G +Y ++E + V +
Sbjct: 380 RNGRLVITGRAKDIIIVNGQ--------NYYPH-----DIERVAEQVEGIKLGRVAACGV 426
Query: 159 RPHPVKGECLYCFI-TPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSG 217
+ E + F+ F L ++K+ V +K+G + VI +PKT SG
Sbjct: 427 YDEKEQSEEVVIFVEYRQSLDDFT-PLALKIKRHVNKKMG-LNIDHVIP-VRSIPKTTSG 483
Query: 218 KIMRRVLRK 226
KI R L +
Sbjct: 484 KIQRYKLAQ 492
>gnl|CDD|164919 PHA02458, A, protein A*; Reviewed.
Length = 341
Score = 31.4 bits (71), Expect = 0.43
Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
Query: 180 FNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSGKIMRRVLRKVAVNDREVGDKS- 238
FN L + K+++R ++ ++ DV++ P T K MR + R + V++ + S
Sbjct: 246 FNNILKQNAKKELRLRLAKKSVADVLEAQPVT--TNLLKFMRNLTRTIGVSNLQSFIASM 303
Query: 239 --TLADEDVVDE 248
L + D+ DE
Sbjct: 304 TQKLTNTDISDE 315
>gnl|CDD|222768 PHA00002, A, DNA replication initiation protein gpA.
Length = 515
Score = 31.4 bits (71), Expect = 0.43
Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Query: 180 FNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSGKIMRRVLRKVAVNDREVGDKS- 238
FNQ L + K+++R ++G ++ DV++ P T K MR + +K+ ++ + S
Sbjct: 420 FNQILKQNAKKELRLRLGKLSVADVLEAQPVT--TNLLKFMRNLTKKIGESNLQSFIASM 477
Query: 239 --TLADEDVVDE 248
L + D+ DE
Sbjct: 478 TVKLTNGDISDE 489
>gnl|CDD|213298 cd05932, LC_FACS_bac, Bacterial long-chain fatty acid CoA
synthetase (LC-FACS), including Marinobacter
hydrocarbonoclasticus isoprenoid Coenzyme A synthetase.
The members of this family are bacterial long-chain
fatty acid CoA synthetase. Marinobacter
hydrocarbonoclasticus isoprenoid Coenzyme A synthetase
in this family is involved in the synthesis of
isoprenoid wax ester storage compounds when grown on
phytol as the sole carbon source. LC-FACS catalyzes the
formation of fatty acyl-CoA in a two-step reaction: the
formation of a fatty acyl-AMP molecule as an
intermediate, and the formation of a fatty acyl-CoA.
Free fatty acids must be "activated" to their CoA
thioesters before participating in most catabolic and
anabolic reactions.
Length = 504
Score = 31.1 bits (71), Expect = 0.64
Identities = 27/100 (27%), Positives = 42/100 (42%), Gaps = 15/100 (15%)
Query: 101 DEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSR- 159
DEDG+L +TGRV ++ S G Y + A +E L+++P V + VV
Sbjct: 382 DEDGFLKITGRVKELFKTSK--------GKYVAPAP----IENLLSANPHVEQVCVVGSG 429
Query: 160 -PHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGP 198
P PV L P + L +Q +V ++
Sbjct: 430 LPQPVALVVLSEAADPLEREEVEESL-QQTLAKVNSELES 468
>gnl|CDD|224458 COG1541, PaaK, Coenzyme F390 synthetase [Coenzyme metabolism].
Length = 438
Score = 30.7 bits (70), Expect = 0.66
Identities = 21/96 (21%), Positives = 34/96 (35%), Gaps = 28/96 (29%)
Query: 108 VTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEA--AVVSRPHP--- 162
+ GR DDML V G V F S +E L P+V+ +++R
Sbjct: 329 IEGRSDDMLIVRG----VNVFPSQ---------IERVLLQIPEVTPHYQIILTRNGGLDE 375
Query: 163 --VKGECLYCFITPAGGATFNQELVKQLKQQVREKI 196
V+ E E +L +++ + I
Sbjct: 376 LTVRVEL------ENEAEELEDER--RLAKKLIKNI 403
>gnl|CDD|181207 PRK08043, PRK08043, bifunctional acyl-[acyl carrier protein]
synthetase/2-acylglycerophosphoethanolamine
acyltransferase; Validated.
Length = 718
Score = 30.8 bits (70), Expect = 0.67
Identities = 34/131 (25%), Positives = 55/131 (41%), Gaps = 24/131 (18%)
Query: 101 DEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEA-CLASHPDVSEAAVVSR 159
DE G++ + GR ++G ++++ VE L PD A + +
Sbjct: 602 DEQGFVQIQGRAKRFAKIAGEMVSL-------------EMVEQLALGVSPDKQHATAI-K 647
Query: 160 PHPVKGECLYCFITPAGGATFNQELVK-QLKQQVREKIGP-FAMPDVIQHAPRLPKTRSG 217
KGE L F T + EL + +L+Q RE P A+P I++ +LP SG
Sbjct: 648 SDASKGEALVLFTTDS-------ELTREKLQQYAREHGVPELAVPRDIRYLKQLPLLGSG 700
Query: 218 KIMRRVLRKVA 228
K L+ +
Sbjct: 701 KPDFVTLKSMV 711
>gnl|CDD|233551 TIGR01734, D-ala-DACP-lig, D-alanine--poly(phosphoribitol) ligase,
subunit 1. This model represents the enzyme (also
called D-alanine-D-alanyl carrier protein ligase) which
activates D-alanine as an adenylate via the reaction
D-ala + ATP -> D-ala-AMP + PPi, and further catalyzes
the condensation of the amino acid adenylate with the
D-alanyl carrier protein (D-ala-ACP). The D-alanine is
then further transferred to teichoic acid in the
biosynthesis of lipoteichoic acid (LTA) and wall
teichoic acid (WTA) in gram positive bacteria, both
polysacchatides [Cell envelope, Biosynthesis and
degradation of murein sacculus and peptidoglycan].
Length = 502
Score = 30.9 bits (70), Expect = 0.72
Identities = 29/125 (23%), Positives = 55/125 (44%), Gaps = 15/125 (12%)
Query: 102 EDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPH 161
DG L+ GR+D + + G+ + + ++E L + A VV + +
Sbjct: 385 TDGQLFYQGRLDFQIKLHGYRIEL-------------EDIEFNLRQSSYIESAVVVPKYN 431
Query: 162 PV-KGECLYCFITPAGGATFNQE-LVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSGKI 219
K E L I P + L K +K+++++ + + +P + +LP T +GKI
Sbjct: 432 KDHKVEYLIAAIVPETEDFEKEFQLTKAIKKELKKSLPAYMIPRKFIYRDQLPLTANGKI 491
Query: 220 MRRVL 224
R+ L
Sbjct: 492 DRKAL 496
>gnl|CDD|235998 PRK07349, PRK07349, amidophosphoribosyltransferase; Provisional.
Length = 500
Score = 29.3 bits (66), Expect = 2.0
Identities = 25/93 (26%), Positives = 41/93 (44%), Gaps = 14/93 (15%)
Query: 18 GMERFSFTVLGQVTVPQISILEPRLGDDLNLTLSMNPTLVGRRAMKSLKFQNTSKVRAQL 77
G R+S T + Q ++LE RLG L L+ N LV NT ++R +L
Sbjct: 103 GHTRYSTTGSSRKANAQPAVLETRLG---PLALAHNGNLV-----------NTVELREEL 148
Query: 78 LHGHNNFSFTTNNSDLLLSSARRDEDGYLWVTG 110
L + TT++ + + A+ + G W+
Sbjct: 149 LARGCELTTTTDSEMIAFAIAQAVDAGKDWLEA 181
>gnl|CDD|224163 COG1242, COG1242, Predicted Fe-S oxidoreductase [General function
prediction only].
Length = 312
Score = 28.4 bits (64), Expect = 3.9
Identities = 8/36 (22%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 164 KGECLYCFITPAGGATFNQELVKQLKQQVREKIGPF 199
+G C +C + AG F + + +Q +E+
Sbjct: 43 RGGCTFC--SVAGSGDFAGQPKISIAEQFKEQAERM 76
>gnl|CDD|234212 TIGR03443, alpha_am_amid, L-aminoadipate-semialdehyde
dehydrogenase. Members of this protein family are
L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31),
product of the LYS2 gene. It is also called
alpha-aminoadipate reductase. In fungi, lysine is
synthesized via aminoadipate. Currently, all members of
this family are fungal.
Length = 1389
Score = 28.5 bits (64), Expect = 4.2
Identities = 21/85 (24%), Positives = 39/85 (45%), Gaps = 13/85 (15%)
Query: 183 ELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSGKIMR--------RVLRKVAVNDREV 234
+L+K +++ +++K+ +A+P VI +LP +GK+ + L VA N
Sbjct: 781 KLIKDIREYLKKKLPSYAIPTVIVPLKKLPLNPNGKVDKPALPFPDTAQLAAVAKNRSAS 840
Query: 235 GDKSTLA--DEDVVD---ELFQNRP 254
+ ++ D EL NRP
Sbjct: 841 AADEEFTETEREIRDLWLELLPNRP 865
>gnl|CDD|171527 PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional.
Length = 612
Score = 28.6 bits (64), Expect = 4.3
Identities = 34/128 (26%), Positives = 55/128 (42%), Gaps = 19/128 (14%)
Query: 103 DGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLA-SHPDVSEAAVVSRPH 161
DG L++TGR+ D++ + G Y ++EA +A + P V V +
Sbjct: 488 DGELYITGRIADLIVIDGR-------NHYP------QDIEATVAEASPMVRRGYVTAFTV 534
Query: 162 P-VKGECLYCFITPAGGATFN--QELVKQLKQQVREKIGPFAMPDV-IQHAPRLPKTRSG 217
P E L A G + + ++ V + G A+ DV + A +P+T SG
Sbjct: 535 PAEDNERLVIVAERAAGTSRADPAPAIDAIRAAVSRRHG-LAVADVRLVPAGAIPRTTSG 593
Query: 218 KIMRRVLR 225
K+ RR R
Sbjct: 594 KLARRACR 601
>gnl|CDD|198029 smart00961, RuBisCO_small, Ribulose bisphosphate carboxylase, small
chain. RuBisCO (ribulose-1,5-bisphosphate
carboxylase/oxygenase) is a bifunctional enzyme that
catalyses both the carboxylation and oxygenation of
ribulose-1,5-bisphosphate (RuBP), thus fixing carbon
dioxide as the first step of the Calvin cycle. RuBisCO
is the major protein in the stroma of chloroplasts, and
in higher plants exists as a complex of 8 large and 8
small subunits. The function of the small subunit is
unknown. While the large subunit is coded for by a
single gene, the small subunit is coded for by several
different genes, which are distributed in a tissue
specific manner. They are transcriptionally regulated by
light receptor phytochrome. which results in RuBisCO
being more abundant during the day when it is required.
Length = 96
Score = 26.7 bits (60), Expect = 4.3
Identities = 10/16 (62%), Positives = 12/16 (75%)
Query: 135 AKVFTEVEACLASHPD 150
A+V E+EACLA HP
Sbjct: 57 AEVLAELEACLAEHPG 72
>gnl|CDD|237974 PRK15489, nfrB, bacteriophage N4 adsorption protein B; Provisional.
Length = 703
Score = 28.2 bits (63), Expect = 5.4
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 6/60 (10%)
Query: 112 VDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVVSRPHP---VKGECL 168
+++ML + V F G+Y + A+ TEVE + + V PH K +CL
Sbjct: 90 IENMLATLDYRRYVIFVGTYPNDAETITEVERMRRRYKRLVRVEV---PHDGPTCKADCL 146
>gnl|CDD|201001 pfam00101, RuBisCO_small, Ribulose bisphosphate carboxylase, small
chain.
Length = 99
Score = 26.4 bits (59), Expect = 6.2
Identities = 8/24 (33%), Positives = 12/24 (50%), Gaps = 1/24 (4%)
Query: 127 FFGSYCSTAKVFTEVEACLASHPD 150
FG A+V E+E C ++P
Sbjct: 52 MFGCT-DAAQVLAELEECRKAYPG 74
>gnl|CDD|224425 COG1508, RpoN, DNA-directed RNA polymerase specialized sigma
subunit, sigma54 homolog [Transcription].
Length = 444
Score = 27.3 bits (61), Expect = 8.2
Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 5/55 (9%)
Query: 174 PAGGATFN-QE-LVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSGKIMRRVLRK 226
PAG + +E L+ QL++ R P A+ VI H L + I R +
Sbjct: 157 PAGVGARDLRECLLLQLER--RPLDDP-ALEIVIDHLELLARRDFTTIARELKVD 208
>gnl|CDD|236574 PRK09568, PRK09568, DNA primase large subunit; Reviewed.
Length = 306
Score = 27.1 bits (60), Expect = 8.8
Identities = 11/55 (20%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 184 LVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSGKI---MRRVLRKVAVNDREVG 235
L + +K ++ E I P + ++ + L + + GK + +L K +++ E+
Sbjct: 180 LAENIKNKIVEMIRPLNLKEIPEKLKSLIEEKGGKTPPCIENILGKEELSEEEIR 234
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.135 0.397
Gapped
Lambda K H
0.267 0.0815 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 13,201,873
Number of extensions: 1232297
Number of successful extensions: 1593
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1378
Number of HSP's successfully gapped: 179
Length of query: 258
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 163
Effective length of database: 6,723,972
Effective search space: 1096007436
Effective search space used: 1096007436
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.0 bits)