RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12528
(258 letters)
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming,
thioester-forming, ligase; HET: COA PRX; 1.75A
{Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A*
2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Length = 652
Score = 250 bits (642), Expect = 2e-79
Identities = 78/159 (49%), Positives = 105/159 (66%), Gaps = 14/159 (8%)
Query: 98 ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVV 157
ARRDEDGY W+TGRVDD+LNVSGH + TA E+E+ L +HP ++EAAVV
Sbjct: 502 ARRDEDGYYWITGRVDDVLNVSGHRL---------GTA----EIESALVAHPKIAEAAVV 548
Query: 158 SRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSG 217
PH +KG+ +Y ++T G + EL +++ VR++IGP A PDV+ LPKTRSG
Sbjct: 549 GIPHAIKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSG 608
Query: 218 KIMRRVLRKVAVND-REVGDKSTLADEDVVDELFQNRPE 255
KIMRR+LRK+A D +GD STLAD VV++L + +
Sbjct: 609 KIMRRILRKIAAGDTSNLGDTSTLADPGVVEKLLEEKQA 647
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP
forming, related to firefly luciferase, ligase; HET:
AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Length = 663
Score = 242 bits (621), Expect = 3e-76
Identities = 64/164 (39%), Positives = 95/164 (57%), Gaps = 21/164 (12%)
Query: 98 ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVV 157
A +D+DGY+W+ GRVDD++NVSGH + STA E+EA + P V+E AVV
Sbjct: 511 AAKDKDGYIWILGRVDDVVNVSGHRL---------STA----EIEAAIIEDPIVAECAVV 557
Query: 158 SRPHPVKGECLYCFITPAGGATFN-------QELVKQLKQQVREKIGPFAMPDVIQHAPR 210
+ G+ + F+ ++++ Q++ K L VR+ IGPFA P +I
Sbjct: 558 GFNDDLTGQAVAAFVVLKNKSSWSTATDDELQDIKKHLVFTVRKDIGPFAAPKLIILVDD 617
Query: 211 LPKTRSGKIMRRVLRKVAVNDRE-VGDKSTLADEDVVDELFQNR 253
LPKTRSGKIMRR+LRK+ + + +GD STL++ +V L +
Sbjct: 618 LPKTRSGKIMRRILRKILAGESDQLGDVSTLSNPGIVRHLIDSV 661
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase,
ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina
acetivorans}
Length = 580
Score = 174 bits (444), Expect = 3e-51
Identities = 46/132 (34%), Positives = 63/132 (47%), Gaps = 13/132 (9%)
Query: 97 SARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAV 156
A DEDGYLW GR DD++ SG+ + EVE+ L HP V E A+
Sbjct: 459 MAWMDEDGYLWFVGRADDIIKTSGYKV---------GPF----EVESALIQHPAVLECAI 505
Query: 157 VSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRS 216
P PV+G+ + I T + L +L+ V+ P+ P +I+ P LPKT S
Sbjct: 506 TGVPDPVRGQVIKATIVLTKDYTPSDSLKNELQDHVKNVTAPYKYPRIIEFVPELPKTIS 565
Query: 217 GKIMRRVLRKVA 228
GKI R +R
Sbjct: 566 GKIRRVEIRDKD 577
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain
acyl-COA synthetase, xenobiotic/medium-chain FA COA
ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A
3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Length = 570
Score = 152 bits (386), Expect = 6e-43
Identities = 48/132 (36%), Positives = 67/132 (50%), Gaps = 15/132 (11%)
Query: 97 SARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAV 156
+DEDGY GR DD++N SG+ + + EVE L HP V E AV
Sbjct: 440 RGIKDEDGYFQFMGRADDIINSSGYRI---------GPS----EVENALMEHPAVVETAV 486
Query: 157 VSRPHPVKGECLYCFITPAGG--ATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKT 214
+S P PV+GE + F+ A + ++L K+L+Q V+ P+ P I+ LPKT
Sbjct: 487 ISSPDPVRGEVVKAFVVLASQFLSHDPEQLTKELQQHVKSVTAPYKYPRKIEFVLNLPKT 546
Query: 215 RSGKIMRRVLRK 226
+GKI R LR
Sbjct: 547 VTGKIQRAKLRD 558
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA
ligase; 1.84A {Burkholderia xenovorans}
Length = 529
Score = 132 bits (334), Expect = 1e-35
Identities = 42/129 (32%), Positives = 54/129 (41%), Gaps = 14/129 (10%)
Query: 98 ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVV 157
R +G GR DDML VSG V EVE L H V EAAVV
Sbjct: 414 YCRLPNGCYVYAGRSDDMLKVSG--QYVSPV-----------EVEMVLVQHDAVLEAAVV 460
Query: 158 SRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSG 217
H F+ ++ L ++LK V++++ P P I LPKT +G
Sbjct: 461 GVDHG-GLVKTRAFVVLKREFAPSEILAEELKAFVKDRLAPHKYPRDIVFVDDLPKTATG 519
Query: 218 KIMRRVLRK 226
KI R LR+
Sbjct: 520 KIQRFKLRE 528
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate
synthetase, isochroismatase...; adenylate-forming
enzymes, ANL superfamily; HET: SVS PNS; 3.10A
{Escherichia coli}
Length = 617
Score = 108 bits (273), Expect = 3e-27
Identities = 39/151 (25%), Positives = 64/151 (42%), Gaps = 17/151 (11%)
Query: 98 ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVV 157
D +GY+ V GR D +N G + A+ E+E L HP V AA+V
Sbjct: 419 ISIDPEGYITVQGREKDQINRGG--EKIA--------AE---EIENLLLRHPAVIYAALV 465
Query: 158 SRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSG 217
S + GE ++ ++ + L++Q I F +PD ++ LP T G
Sbjct: 466 SMEDELMGEKSCAYLVVKEPLRA-VQVRRFLREQ---GIAEFKLPDRVECVDSLPLTAVG 521
Query: 218 KIMRRVLRKVAVNDREVGDKSTLADEDVVDE 248
K+ ++ LR+ + G S A + + E
Sbjct: 522 KVDKKQLRQWLASRASAGRASIPASKAALRE 552
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase;
HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB:
4fut_A*
Length = 503
Score = 108 bits (271), Expect = 3e-27
Identities = 35/129 (27%), Positives = 59/129 (45%), Gaps = 16/129 (12%)
Query: 98 ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVV 157
+ DE GY+ + GR D++ G VY E+E+ + + P V E+AV+
Sbjct: 384 GKIDERGYVHILGRGKDLVITGG--FNVYP-----------KEIESEIDAMPGVVESAVI 430
Query: 158 SRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSG 217
PH GE + + GAT ++ Q+ + ++ F MP + LP+ G
Sbjct: 431 GVPHADFGEGVTAVVVRDKGATIDEA---QVLHGLDGQLAKFKMPKKVIFVDDLPRNTMG 487
Query: 218 KIMRRVLRK 226
K+ + VLR+
Sbjct: 488 KVQKNVLRE 496
>3o83_A Peptide arylation enzyme; ligase, adenylation of
2,3-dihydroxybenzoate and transfer to pantetheine
cofactor of BASF; HET: IXN; 1.90A {Acinetobacter
baumannii} PDB: 3o82_A* 3o84_A*
Length = 544
Score = 106 bits (267), Expect = 2e-26
Identities = 35/129 (27%), Positives = 53/129 (41%), Gaps = 16/129 (12%)
Query: 98 ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVV 157
+R DG L V GR+ D +N G + ++ E+E + HP+V AA+V
Sbjct: 424 VQRTPDGNLRVVGRIKDQINRGG--EKIA--------SE---EIEKLILLHPEVMHAALV 470
Query: 158 SRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSG 217
+ GE FI L + L I + +PD I+ LP T G
Sbjct: 471 AIVDEQFGEKSCAFIVSRNPELKAVVLRRHLM---ELGIAQYKLPDQIKLIESLPLTAVG 527
Query: 218 KIMRRVLRK 226
K+ ++ LR
Sbjct: 528 KVDKKQLRS 536
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein
synthetase, PSI-2, protein structure initiative; 2.30A
{Staphylococcus aureus subsp}
Length = 501
Score = 104 bits (263), Expect = 5e-26
Identities = 25/129 (19%), Positives = 47/129 (36%), Gaps = 18/129 (13%)
Query: 98 ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVV 157
A D +GY+ + R D++ G +Y ++E P +S+A V
Sbjct: 383 AEIDHEGYVMIYDRRKDLIISGG--ENIY-------PY----QIETVAKQFPGISDAVCV 429
Query: 158 SRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSG 217
P G+ + + QL + + + + +P + LP T +G
Sbjct: 430 GHPDDTWGQVPKLYFVSESDIS-----KAQLIAYLSKHLAKYKVPKHFEKVDTLPYTSTG 484
Query: 218 KIMRRVLRK 226
K+ R L +
Sbjct: 485 KLQRNKLYR 493
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase);
ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis}
PDB: 3t5c_A 3t5b_A
Length = 517
Score = 104 bits (263), Expect = 6e-26
Identities = 31/129 (24%), Positives = 57/129 (44%), Gaps = 17/129 (13%)
Query: 98 ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVV 157
D++GYL++ R+ DM+ G Y + E+E+ + P VSE AV+
Sbjct: 398 GEIDDEGYLYIKDRLKDMIISGG-------ENVYPA------EIESVIIGVPGVSEVAVI 444
Query: 158 SRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSG 217
P GE + Q++V + ++ + +P + A +P+ +G
Sbjct: 445 GLPDEKWGEIAAAIVVADQNEVSEQQIV----EYCGTRLARYKLPKKVIFAEAIPRNPTG 500
Query: 218 KIMRRVLRK 226
KI++ VLR+
Sbjct: 501 KILKTVLRE 509
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide
synthetase, antibiotic biosynthesis, siderophore
formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP:
e.23.1.1 PDB: 1md9_A* 1mdf_A
Length = 539
Score = 103 bits (260), Expect = 2e-25
Identities = 41/132 (31%), Positives = 60/132 (45%), Gaps = 16/132 (12%)
Query: 98 ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVV 157
R DGY+ V GR D +N G V A+ EVE L +HP V +AA+V
Sbjct: 415 VRLTRDGYIVVEGRAKDQINRGG--EKVA--------AE---EVENHLLAHPAVHDAAMV 461
Query: 158 SRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSG 217
S P GE FI P A EL L+++ + + +PD ++ P+T G
Sbjct: 462 SMPDQFLGERSCVFIIPRDEAPKAAELKAFLRER---GLAAYKIPDRVEFVESFPQTGVG 518
Query: 218 KIMRRVLRKVAV 229
K+ ++ LR+
Sbjct: 519 KVSKKALREAIS 530
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel
adenylate-forming EN fold; HET: MCA AMP; 1.43A
{Streptomyces coelicolor} PDB: 3nyr_A*
Length = 505
Score = 103 bits (258), Expect = 2e-25
Identities = 41/131 (31%), Positives = 59/131 (45%), Gaps = 18/131 (13%)
Query: 98 ARRDEDGYLWVTGR-VDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAV 156
A RD DGY+ + GR D++ G + A E+E L HP+V EAAV
Sbjct: 390 AVRDPDGYVRIVGRKATDLIKSGG--YKIG--------AG---EIENALLEHPEVREAAV 436
Query: 157 VSRPHPVKGECLYCFITPA-GGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTR 215
P P GE + +I PA A L V ++ P P V+++ +P+
Sbjct: 437 TGEPDPDLGERIVAWIVPADPAAPPALG---TLADHVAARLAPHKRPRVVRYLDAVPRND 493
Query: 216 SGKIMRRVLRK 226
GKIM+R L +
Sbjct: 494 MGKIMKRALNR 504
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics,
PSI-2, protein S initiative, fatty acid synthesis; HET:
GOL; 2.00A {Rhodopseudomonas palustris}
Length = 509
Score = 101 bits (255), Expect = 7e-25
Identities = 32/131 (24%), Positives = 48/131 (36%), Gaps = 18/131 (13%)
Query: 98 ARRDEDGYLWVTGRVD--DMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAA 155
R D DGYL+ GR +++ G Y EVE L HP +++A
Sbjct: 383 GRFDADGYLFYAGRAPEKELIKTGG-------ENVYP------AEVEGALKQHPAIADAV 429
Query: 156 VVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTR 215
V+ P P E + G + + L + V I + P + LPK
Sbjct: 430 VIGVPDPQWSEAIKAVCVCKPGESIAAD---ALAEFVASLIARYKKPKHVVFVEALPKDA 486
Query: 216 SGKIMRRVLRK 226
G I R ++
Sbjct: 487 KGAIDRAAVKT 497
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase
domain alternation confo change; 2.00A {Alcaligenes SP}
SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X*
2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Length = 504
Score = 100 bits (251), Expect = 2e-24
Identities = 32/130 (24%), Positives = 52/130 (40%), Gaps = 17/130 (13%)
Query: 98 ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVV 157
A +G + + GRVDDM+ G + S E+E L + P V+E V+
Sbjct: 387 AVWTPEGTVRILGRVDDMIISGG-------ENIHPS------EIERVLGTAPGVTEVVVI 433
Query: 158 SRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVR-EKIGPFAMPDVIQHAPRLPKTRS 216
G+ + + P G T + + L R ++ F P +LPK
Sbjct: 434 GLADQRWGQSVTACVVPRLGETLSAD---ALDTFCRSSELADFKRPKRYFILDQLPKNAL 490
Query: 217 GKIMRRVLRK 226
K++RR L +
Sbjct: 491 NKVLRRQLVQ 500
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure
initiative, PSI-II, NYSGXRC, 11193J, structural
genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Length = 549
Score = 99 bits (250), Expect = 3e-24
Identities = 34/130 (26%), Positives = 58/130 (44%), Gaps = 16/130 (12%)
Query: 98 ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVF-TEVEACLASHPDVSEAAV 156
DE+G+L RV +++ G+ + E+EA L H V + AV
Sbjct: 424 GFIDEEGFLHFQDRVKEVIKYKGY--------------TIAPFELEALLMKHEAVMDVAV 469
Query: 157 VSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRS 216
+ +P GE FI + + + + VRE+I + ++ LP+T S
Sbjct: 470 IGKPDEEAGEVPKAFIVLKPEYRGKVD-EEDIIEWVRERISGYKRVREVEFVEELPRTAS 528
Query: 217 GKIMRRVLRK 226
GK++RR+LR+
Sbjct: 529 GKLLRRLLRE 538
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL
EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Length = 536
Score = 94.9 bits (237), Expect = 2e-22
Identities = 30/130 (23%), Positives = 61/130 (46%), Gaps = 18/130 (13%)
Query: 98 ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVF-TEVEACLASHPDVSEAAV 156
D+D L++ R+ +++ G +V E+EA L +HP++S+AAV
Sbjct: 419 GYIDDDDELFIVDRLKELIKYKGF--------------QVAPAELEALLIAHPEISDAAV 464
Query: 157 VSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRS 216
V GE F+ + + ++ ++KQ + +++ + + +PK S
Sbjct: 465 VGLKDEDAGEVPVAFVVKSEKSQATED---EIKQYISKQVIFYKRIKRVFFIEAIPKAPS 521
Query: 217 GKIMRRVLRK 226
GKI+R+ L++
Sbjct: 522 GKILRKNLKE 531
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase,
photoprotein, luminescence, aspulvinone, natural product
extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A
1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A
Length = 550
Score = 91.1 bits (227), Expect = 3e-21
Identities = 30/145 (20%), Positives = 61/145 (42%), Gaps = 20/145 (13%)
Query: 98 ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVF-TEVEACLASHPDVSEAAV 156
A DED + ++ R+ ++ G+ +V E+E+ L HP++ +A V
Sbjct: 424 AYWDEDEHFFIVDRLKSLIKYKGY--------------QVAPAELESILLQHPNIFDAGV 469
Query: 157 VSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPF-AMPDVIQHAPRLPKTR 215
P GE + G T ++ ++ V ++ + + +PK
Sbjct: 470 AGLPDDDAGELPAAVVVLEHGKTMTEK---EIVDYVASQVTTAKKLRGGVVFVDEVPKGL 526
Query: 216 SGKIMRRVLRKVAVNDREVGDKSTL 240
+GK+ R +R++ + ++ G KS L
Sbjct: 527 TGKLDARKIREILIKAKK-GGKSKL 550
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel,
alpha+beta, riken structural genomics/proteomics
initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata}
PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Length = 548
Score = 90.3 bits (225), Expect = 7e-21
Identities = 26/133 (19%), Positives = 54/133 (40%), Gaps = 19/133 (14%)
Query: 98 ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVF-TEVEACLASHPDVSEAAV 156
DE+ + ++ R+ ++ G+ +V E+E+ L HP + +A V
Sbjct: 426 GYYDEEKHFFIVDRLKSLIKYKGY--------------QVPPAELESVLLQHPSIFDAGV 471
Query: 157 VSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPF-AMPDVIQHAPRLPKTR 215
P PV GE + G ++ ++ V ++ + ++ +PK
Sbjct: 472 AGVPDPVAGELPGAVVVLESGKNMTEK---EVMDYVASQVSNAKRLRGGVRFVDEVPKGL 528
Query: 216 SGKIMRRVLRKVA 228
+GKI R +R++
Sbjct: 529 TGKIDGRAIREIL 541
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase;
transferase; 3.10A {Arabidospis thaliana}
Length = 979
Score = 84.3 bits (209), Expect = 1e-18
Identities = 32/137 (23%), Positives = 61/137 (44%), Gaps = 18/137 (13%)
Query: 98 ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVF-TEVEACLASHPDVSEAAV 156
D+D L++ R+ +++ G +V E+EA L HPD+++ AV
Sbjct: 466 GLIDDDDELFIVDRLKELIKYKGF--------------QVAPAELEALLIGHPDITDVAV 511
Query: 157 VSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRS 216
V+ GE F+ + + +++ +KQ V +++ + + + +PK S
Sbjct: 512 VAMKEEAAGEVPVAFVVKSKDSELSED---DVKQFVSKQVVFYKRINKVFFTESIPKAPS 568
Query: 217 GKIMRRVLRKVAVNDRE 233
GKI+R+ LR N
Sbjct: 569 GKILRKDLRAKLANGLG 585
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics,
riken structural genomics/proteomics initiative, RSGI;
HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1
PDB: 1ult_A* 1v26_A*
Length = 541
Score = 83.3 bits (207), Expect = 2e-18
Identities = 40/131 (30%), Positives = 64/131 (48%), Gaps = 20/131 (15%)
Query: 98 ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDVSEAAVV 157
A DE+GY+ + R+ D++ SG G + S+ ++E L HP V EAAVV
Sbjct: 420 AVWDEEGYVEIKDRLKDLI-KSG--------GEWISS----VDLENALMGHPKVKEAAVV 466
Query: 158 SRPHPVKGE--CLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTR 215
+ PHP E + P G +EL + L ++ + +PD A +P+T
Sbjct: 467 AIPHPKWQERPLA--VVVPRGEKPTPEELNEHL---LKAGFAKWQLPDAYVFAEEIPRTS 521
Query: 216 SGKIMRRVLRK 226
+GK ++R LR+
Sbjct: 522 AGKFLKRALRE 532
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme
family,, structural genomics, PSI-2, protein structure
initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB:
3pbk_A*
Length = 576
Score = 58.8 bits (143), Expect = 3e-10
Identities = 26/128 (20%), Positives = 48/128 (37%), Gaps = 23/128 (17%)
Query: 103 DGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDV--SEAAVVSRP 160
DGYL+VTGR+ D++ + G + ++E P++ +A
Sbjct: 451 DGYLYVTGRIKDLIIIRGR--------NIWPQ-----DIEYIAEQEPEIHSGDAIAFV-- 495
Query: 161 HPVKGECLYCFI-TPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPR-LPKTRSGK 218
E + I +L+ L +++ + G + P +P+T SGK
Sbjct: 496 --TAQEKIILQIQCRISDEERRGQLIHALAARIQSEFG--VTAAIDLLPPHSIPRTSSGK 551
Query: 219 IMRRVLRK 226
R +K
Sbjct: 552 PARAEAKK 559
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA,
non-ribosomal peptide synthetase, NRPS, adenylation
domain, D-alanylation; HET: AMP; 2.28A {Bacillus
subtilis} PDB: 3e7x_A*
Length = 511
Score = 57.9 bits (141), Expect = 7e-10
Identities = 19/87 (21%), Positives = 33/87 (37%), Gaps = 3/87 (3%)
Query: 140 EVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQE-LVKQLKQQVREKIGP 198
E+E + V A V+ E L I P + L +K+++ + P
Sbjct: 412 EIEFHVRQSQYVRSAVVIPYQPNGTVEYLIAAIVPEEHEFEKEFQLTSAIKKELAASL-P 470
Query: 199 FAM-PDVIQHAPRLPKTRSGKIMRRVL 224
M P + + T +GKI R+ +
Sbjct: 471 AYMIPRKFIYQDHIQMTANGKIDRKRI 497
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming
domain, adenylation, D-alanine protein ligase, ATP
complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A*
3dhv_A*
Length = 512
Score = 57.5 bits (140), Expect = 8e-10
Identities = 19/86 (22%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
Query: 140 EVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQE-LVKQLKQQVREKIGP 198
E+E L + V A +V K + L + P + + L +K+++ E++
Sbjct: 413 EIEHHLRACSYVEGAVIVPIKKGEKYDYLLAVVVPGEHSFEKEFKLTSAIKKELNERLPN 472
Query: 199 FAMPDVIQHAPRLPKTRSGKIMRRVL 224
+ +P + +P T +GK+ R+ L
Sbjct: 473 YMIPRKFMYQSSIPMTPNGKVDRKKL 498
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural
genomics, DLTA, ATP-binding, cytoplasm,
nucleotide-binding; 2.41A {Streptococcus pyogenes
serotype M6} PDB: 3lgx_A*
Length = 521
Score = 56.4 bits (137), Expect = 2e-09
Identities = 24/90 (26%), Positives = 37/90 (41%), Gaps = 5/90 (5%)
Query: 140 EVEACLASHPDVSEAAVVSRP-HPVKGECLYCFITPAGGATFNQE----LVKQLKQQVRE 194
+V L P V+ A V R K + L +I G + L K +K V++
Sbjct: 417 DVSQQLNQSPMVASAVAVPRYNKEHKVQNLLAYIVVKDGVKERFDRELELTKAIKASVKD 476
Query: 195 KIGPFAMPDVIQHAPRLPKTRSGKIMRRVL 224
+ + MP + LP T +GKI + L
Sbjct: 477 HMMSYMMPSKFLYRDSLPLTPNGKIDIKTL 506
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate
forming; HET: PHE AMP; 1.90A {Brevibacillus brevis}
SCOP: e.23.1.1
Length = 563
Score = 53.6 bits (130), Expect = 2e-08
Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 5/85 (5%)
Query: 140 EVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPF 199
EVE+ L H +SE AV + L + ++QL+Q E++ +
Sbjct: 444 EVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSEKHIP-----LEQLRQFSSEELPTY 498
Query: 200 AMPDVIQHAPRLPKTRSGKIMRRVL 224
+P ++P T +GKI R+ L
Sbjct: 499 MIPSYFIQLDKMPLTSNGKIDRKQL 523
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein,
ligase phosphoprotein, TER module, phosphopantetheine;
2.60A {Bacillus subtilis}
Length = 1304
Score = 53.0 bits (128), Expect = 3e-08
Identities = 30/133 (22%), Positives = 54/133 (40%), Gaps = 30/133 (22%)
Query: 98 ARRDEDG---YLWVTGRVDDMLNVSGH---LMTVYFFGSYCSTAKVFTEVEACLASHPDV 151
AR DG Y GR+DD + + GH L E+E L +P V
Sbjct: 846 ARWLPDGTIEYA---GRIDDQVKIRGHRIEL------E----------EIEKQLQEYPGV 886
Query: 152 SEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRL 211
+A VV+ H + ++ + + +K +++++ + +P L
Sbjct: 887 KDAVVVADRHESGDASINAYLVNRTQLS-----AEDVKAHLKKQLPAYMVPQTFTFLDEL 941
Query: 212 PKTRSGKIMRRVL 224
P T +GK+ +R+L
Sbjct: 942 PLTTNGKVNKRLL 954
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide
synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE;
2.00A {Neotyphodium lolii}
Length = 562
Score = 52.2 bits (126), Expect = 5e-08
Identities = 18/97 (18%), Positives = 33/97 (34%), Gaps = 12/97 (12%)
Query: 140 EVEACLASHPDVSEAAVVSRPHP--VKGECLYCFITPAGGATF---------NQELVKQL 188
EV + S V + + L F+ +G A +E+ L
Sbjct: 441 EVSEVIRSLSPTDIDVVTLLLNHPGTSKQFLVSFVASSGAAVRGELRWINENYKEINNSL 500
Query: 189 KQQVREKIGPFAMPDVIQHAPRLP-KTRSGKIMRRVL 224
+Q + + + +PD I +P + S K + L
Sbjct: 501 RQACEQTLPAYMVPDFIIPISFIPLRDTSAKTDAKAL 537
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier
protei ribosomal peptide synthetase, NRPS, valine
adenylation, LIG; HET: AMP; 2.15A {Pseudomonas
aeruginosa} PDB: 4dg9_A*
Length = 620
Score = 49.0 bits (118), Expect = 6e-07
Identities = 17/85 (20%), Positives = 28/85 (32%), Gaps = 10/85 (11%)
Query: 140 EVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPF 199
+E P + + A++ R + L C T A Q + ++ +
Sbjct: 433 ALEQRFRRQPGILDCALLVRERN-GVKQLLCAWTGKADA---------SPQALLRQLPTW 482
Query: 200 AMPDVIQHAPRLPKTRSGKIMRRVL 224
P LP T GK+ R L
Sbjct: 483 QRPHACVRVEALPLTAHGKLDRAAL 507
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl
adenylate, structural genom 2, protein structure
initiative; HET: 1ZZ; 1.85A {Legionella pneumophila
subsp} PDB: 3lnv_A*
Length = 590
Score = 48.8 bits (117), Expect = 7e-07
Identities = 26/132 (19%), Positives = 41/132 (31%), Gaps = 24/132 (18%)
Query: 103 DGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLA-SHPDV--SEAAVVSR 159
+ L+VTGR+ D++ + G ++ ++E L S + A
Sbjct: 448 ENELYVTGRIKDLIIIYGK--------NHYPQ-----DIEFSLMHSPLHHVLGKCAAFVI 494
Query: 160 PHPVKGECLYCFI---TPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPR--LPKT 214
L L ++ + V E I P +P T
Sbjct: 495 QEE-HEYKLTVMCEVKNRFMDDVAQDNLFNEIFELVYENHQ--LEVHTIVLIPLKAMPHT 551
Query: 215 RSGKIMRRVLRK 226
SGKI R RK
Sbjct: 552 TSGKIRRNFCRK 563
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 46.0 bits (108), Expect = 6e-06
Identities = 26/210 (12%), Positives = 62/210 (29%), Gaps = 57/210 (27%)
Query: 79 HGHNNFSFTTN-----NSDLL---LSSARRDEDGY--------LWVTGRVDDMLNVSGHL 122
H H++ F T D+L + + D + +D ++ +
Sbjct: 2 HHHHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAV 61
Query: 123 MTVYF-FGSYC----STAKVFTEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGG 177
F + + F VE L + Y F+
Sbjct: 62 SGTLRLFWTLLSKQEEMVQKF--VEEVLR--IN------------------YKFLMSPIK 99
Query: 178 ATFNQ-ELVKQLKQQVREKIGPFAMPDVIQ--HAPRLPKTRSGKIMRRVLRKVAVNDREV 234
Q ++ ++ + R+++ + V + RL +R+ L ++ +
Sbjct: 100 TEQRQPSMMTRMYIEQRDRL--YNDNQVFAKYNVSRLQPYLK---LRQALLELRPAKNVL 154
Query: 235 --GD----KSTLADEDVVDELFQNRPEGNV 258
G K+ +A + + Q + + +
Sbjct: 155 IDGVLGSGKTWVALDVCLSYKVQCKMDFKI 184
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation
pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Length = 443
Score = 43.8 bits (104), Expect = 3e-05
Identities = 32/132 (24%), Positives = 52/132 (39%), Gaps = 29/132 (21%)
Query: 108 VTGRVDDMLNVSGHLMTVYFFGSYCSTAKVF-TEVEACLASHPDVSEAA--VVSRPHP-- 162
+TGR DDML V G VF +++E + + P +S +SR
Sbjct: 330 ITGRSDDMLIVRG--------------VNVFPSQIEEIVVALPLLSGQFQITLSRDGHMD 375
Query: 163 ---VKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPR-LPKTRSGK 218
+ E L + L ++L+ +++ +G V A +P T +GK
Sbjct: 376 RLDLAVE-LRSEAAASVTDGERAALARELQHRIKTMVG--VSSGVTVLAAGGIPATATGK 432
Query: 219 IMRRV--LRKVA 228
RRV R+ A
Sbjct: 433 -ARRVIDRRQAA 443
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like,
structural genomics, joint cente structural genomics,
JCSG; HET: MSE ADP COA; 2.20A {Bacteroides
thetaiotaomicron} PDB: 3s89_A*
Length = 436
Score = 41.1 bits (97), Expect = 2e-04
Identities = 25/131 (19%), Positives = 46/131 (35%), Gaps = 32/131 (24%)
Query: 107 WVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVF-TEVEACLASHPDVSEA--AVVSRPHP- 162
+ GR DDM + G +F +VE L P++ + +
Sbjct: 325 RIKGRSDDMFIIKG--------------VNIFPMQVEKILVQFPELGSNYLITLETVNNQ 370
Query: 163 ----VKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPR-LPKTRSG 217
V+ E +++ + + +Q++++I P V LP++ G
Sbjct: 371 DEMIVEVELSDLS---TDNYIELEKIRRDIIRQLKDEIL--VTPKVKLVKKGSLPQS-EG 424
Query: 218 KIMRRV--LRK 226
K RV LR
Sbjct: 425 K-AVRVKDLRD 434
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation
pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia
cenocepacia} PDB: 2y4n_A*
Length = 437
Score = 38.4 bits (90), Expect = 0.001
Identities = 28/131 (21%), Positives = 45/131 (34%), Gaps = 32/131 (24%)
Query: 107 WVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVF-TEVEACLASHPDVSEAA--VVSRPHP- 162
+TGR DDM+ V G VF T++E L ++ V+++ P
Sbjct: 327 KITGRSDDMMIVRG--------------VNVFPTQIEEQLLKQRALAPHYQIVLTKEGPL 372
Query: 163 ----VKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPR-LPKTRSG 217
+ E A Q + L ++ IG + + ++ G
Sbjct: 373 DVLTLNVEPCP---ETAPDTAAIQVAKQALAYDIKSLIG--VTAVINVLPVNGIERS-VG 426
Query: 218 KIMRRV--LRK 226
K RRV RK
Sbjct: 427 K-ARRVVDKRK 436
>3gxs_A Phenylacetate-coenzyme A ligase; APC62324.1, structural genomics,
PSI-2, protein structure initiative; 1.43A {Bacteroides
vulgatus atcc 8482} PDB: 3lax_A
Length = 109
Score = 32.7 bits (75), Expect = 0.030
Identities = 23/125 (18%), Positives = 43/125 (34%), Gaps = 26/125 (20%)
Query: 111 RVDDMLNVSGHLMTVYFFGSYCSTAKVF-TEVEACLASHPDVSE--AAVVSRPHPVKGEC 167
DDM+ + G +F ++E L ++ +
Sbjct: 2 NADDMIILKG--------------VNIFPIQIETILLQFKELGSDYLITLETAESNDEMT 47
Query: 168 LYCFITP--AGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPR-LPKTRSGKIMRRV- 223
+ ++ Q L +++ +Q++++I P V LPK+ GK RV
Sbjct: 48 VEVELSQLFTDDYGRLQALTREITRQLKDEIL--VTPRVKLVPKGALPKS-EGKA-VRVK 103
Query: 224 -LRKV 227
LRK
Sbjct: 104 DLRKT 108
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 32.3 bits (73), Expect = 0.19
Identities = 29/209 (13%), Positives = 62/209 (29%), Gaps = 66/209 (31%)
Query: 85 SFTTNNSDLL--LSSARRDEDGYL--------WVTGRVD----DMLN---VSGHLMTVYF 127
+++ L L D + W+ + D L +S L+ V
Sbjct: 186 DLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQ 245
Query: 128 FGSYCSTAKVF----TEVEACLASHPDVSEAAVVSRPHPVKGECLYCFITPAG-GATFNQ 182
Y TAK+ E+ + L S+ V + I +F
Sbjct: 246 LAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAV-----------AIAETDSWESFFV 294
Query: 183 ELVKQLK---------QQV--REKIGPFAMPDVIQH---APRLPKTRSGKIMRRVLRKVA 228
+ K + + + P + D +++ P P M ++
Sbjct: 295 SVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPS-P-------M------LS 340
Query: 229 VNDREVGDKSTLADEDVVDELFQNRPEGN 257
+++ + + +D V++ + P G
Sbjct: 341 ISN---LTQEQV--QDYVNKTNSHLPAGK 364
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein
binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Length = 89
Score = 26.9 bits (60), Expect = 2.0
Identities = 5/31 (16%), Positives = 9/31 (29%), Gaps = 2/31 (6%)
Query: 216 SGKIMRRVLRKVAVNDREVGDKSTLADEDVV 246
G++ + V N A D +
Sbjct: 52 DGELYDHIN--VLRNGEAAALGEATAAGDEL 80
>1m1q_A Small tetraheme cytochrome C; atomic structure of oxidized
tetraheme cytochrome C, electron transport; HET: HEM;
0.97A {Shewanella oneidensis mr-1} SCOP: a.138.1.3 PDB:
1m1p_A* 1m1r_A*
Length = 91
Score = 26.7 bits (58), Expect = 2.8
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 140 EVEACLASHPDVSEAAVVSRPHPVKGECLYC 170
E C + H +SE V +PH C C
Sbjct: 31 EFAQCQSCHGKLSEMDAVHKPHDGNLVCADC 61
>3edn_A Phenazine biosynthesis protein, PHZF family; diaminopimelate
epimerase-like fold, alpha and beta protein class,
structural genomics; HET: MSE; 1.50A {Bacillus
anthracis}
Length = 299
Score = 28.1 bits (63), Expect = 3.0
Identities = 6/39 (15%), Positives = 9/39 (23%)
Query: 142 EACLASHPDVSEAAVVSRPHPVKGECLYCFITPAGGATF 180
+ C P+ V + P C T
Sbjct: 173 DVCERMKPNNEVFPSVLKEIPNASIHPICLETYDEKVHM 211
>3g0k_A Putative membrane protein; snoal-like polyketide cyclase,
structural genomics, joint CE structural genomics, JCSG;
HET: MSE; 1.30A {Novosphingobium aromaticivorans}
Length = 148
Score = 26.9 bits (59), Expect = 4.0
Identities = 11/71 (15%), Positives = 22/71 (30%), Gaps = 5/71 (7%)
Query: 181 NQELVKQLKQQV-----REKIGPFAMPDVIQHAPRLPKTRSGKIMRRVLRKVAVNDREVG 235
N +LV ++ +V + + P +QH+ + + D
Sbjct: 29 NHDLVIEMYNKVLIAMDSSAVDRYIAPGYVQHSSLAEPSVEALKGFLDRVRAESPDARQT 88
Query: 236 DKSTLADEDVV 246
+ D D V
Sbjct: 89 IHRSFVDGDHV 99
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics,
PSI, protein structure INI southeast collaboratory for
structural genomics; 1.51A {Pyrococcus furiosus} SCOP:
d.15.3.1
Length = 98
Score = 26.1 bits (58), Expect = 5.2
Identities = 16/75 (21%), Positives = 25/75 (33%), Gaps = 16/75 (21%)
Query: 172 ITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSGKIMRRVLRKVAVND 231
I GA V+ L ++++++ F + +AVN
Sbjct: 31 IELPEGAR-----VRDLIEEIKKRHEKFKEEVFGEGYDEDADVN-----------IAVNG 74
Query: 232 REVGDKSTLADEDVV 246
R V L D DVV
Sbjct: 75 RYVSWDEELKDGDVV 89
>3dex_A SAV_2001; alpha-beta protein, structural genomics, PSI-2, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.70A {Streptomyces avermitilis}
Length = 107
Score = 25.9 bits (57), Expect = 6.9
Identities = 9/42 (21%), Positives = 17/42 (40%), Gaps = 15/42 (35%)
Query: 172 ITPAGGATF----NQELV-----------KQLKQQVREKIGP 198
+ P G F + E+V +K+ VR+++ P
Sbjct: 49 LKPGTGGVFVVRVDDEVVWDRREQGFPEPTAVKRLVRDRVAP 90
>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus
gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B*
1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B*
1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B
Length = 166
Score = 26.4 bits (59), Expect = 7.2
Identities = 5/36 (13%), Positives = 13/36 (36%), Gaps = 6/36 (16%)
Query: 216 SGKIMRRVLRKVAVNDREVGDKSTLADEDVVDELFQ 251
G I + L ++ G + T + + ++
Sbjct: 109 KGSIKKSFLEELL---TTGGGRFT---PEEIKNMWA 138
>2cib_A Cytochrome P450 51; heme, heme lipid synthesis, metal-binding,
monooxygenase, NADP, oxidoreductase, protein-inhibitor
complex; HET: HEM CM6; 1.50A {Mycobacterium
tuberculosis} SCOP: a.104.1.1 PDB: 2bz9_A* 1x8v_A*
2ci0_A* 2vku_A* 2w09_A* 2w0b_A* 2w0a_A* 1h5z_A* 1ea1_A*
1e9x_A* 1u13_A*
Length = 455
Score = 26.9 bits (60), Expect = 7.7
Identities = 12/65 (18%), Positives = 27/65 (41%), Gaps = 8/65 (12%)
Query: 92 DLLLSSARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPDV 151
D+L++ + E G T R ++G +++ F + +++ + L H D
Sbjct: 227 DVLIAV--KAETG----TPRFSAD-EITGMFISM-MFAGHHTSSGTASWTLIELMRHRDA 278
Query: 152 SEAAV 156
A +
Sbjct: 279 YAAVI 283
>3awm_A Fatty acid alpha-hydroxylase; cytochrome P450, peroxygenase,
oxidoreductase; HET: HEM PLM; 1.65A {Sphingomonas
paucimobilis} PDB: 3awq_A* 3awp_A*
Length = 415
Score = 27.0 bits (60), Expect = 8.0
Identities = 11/66 (16%), Positives = 16/66 (24%), Gaps = 8/66 (12%)
Query: 91 SDLLLSSARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFTEVEACLASHPD 150
+ + RD L L V + A T V L +
Sbjct: 211 TAAYAIAWHRDRHDDLLSPHVAAVEL--------VNVLRPTVAIAVYITFVAHALQTCSG 262
Query: 151 VSEAAV 156
+ A V
Sbjct: 263 IRAALV 268
>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell
cycle progression, phosphorylation, disease mutation,
nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB:
4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*
Length = 302
Score = 26.5 bits (59), Expect = 9.0
Identities = 14/68 (20%), Positives = 26/68 (38%), Gaps = 23/68 (33%)
Query: 136 KVFTE-VEACLASHPDVSEAAVVSRP-------HPVKGECLYCFITPAGGATFNQELVKQ 187
F + ++ L +P+ +RP HP F++ +ELV +
Sbjct: 250 VEFRDFLKIALDKNPE-------TRPSAAQLLEHP--------FVSSITSNKALRELVAE 294
Query: 188 LKQQVREK 195
K +V E+
Sbjct: 295 AKAEVMEE 302
>2bl0_C Myosin regulatory light chain; muscle protein, slime mould,
EF-hand; 1.75A {Physarum polycephalum}
Length = 142
Score = 25.9 bits (58), Expect = 9.5
Identities = 7/36 (19%), Positives = 13/36 (36%), Gaps = 6/36 (16%)
Query: 216 SGKIMRRVLRKVAVNDREVGDKSTLADEDVVDELFQ 251
+G I + L+ +GD+ L + E
Sbjct: 93 TGYIPKAALQDAL---LNLGDR--LKPHE-FAEFLG 122
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.135 0.397
Gapped
Lambda K H
0.267 0.0789 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,963,429
Number of extensions: 234246
Number of successful extensions: 634
Number of sequences better than 10.0: 1
Number of HSP's gapped: 586
Number of HSP's successfully gapped: 61
Length of query: 258
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 166
Effective length of database: 4,133,061
Effective search space: 686088126
Effective search space used: 686088126
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.2 bits)