RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12528
(258 letters)
>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica
[TaxId: 28901]}
Length = 643
Score = 163 bits (413), Expect = 5e-47
Identities = 77/158 (48%), Positives = 105/158 (66%), Gaps = 16/158 (10%)
Query: 98 ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFT-EVEACLASHPDVSEAAV 156
ARRDEDGY W+TGRVDD+LNVSGH ++ T E+E+ L +HP ++EAAV
Sbjct: 498 ARRDEDGYYWITGRVDDVLNVSGH--------------RLGTAEIESALVAHPKIAEAAV 543
Query: 157 VSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRS 216
V PH +KG+ +Y ++T G + EL +++ VR++IGP A PDV+ LPKTRS
Sbjct: 544 VGIPHAIKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRS 603
Query: 217 GKIMRRVLRKVAVND-REVGDKSTLADEDVVDELFQNR 253
GKIMRR+LRK+A D +GD STLAD VV++L + +
Sbjct: 604 GKIMRRILRKIAAGDTSNLGDTSTLADPGVVEKLLEEK 641
>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 640
Score = 149 bits (376), Expect = 7e-42
Identities = 62/164 (37%), Positives = 94/164 (57%), Gaps = 23/164 (14%)
Query: 98 ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFT-EVEACLASHPDVSEAAV 156
A +D+DGY+W+ GRVDD++NVSGH ++ T E+EA + P V+E AV
Sbjct: 488 AAKDKDGYIWILGRVDDVVNVSGH--------------RLSTAEIEAAIIEDPIVAECAV 533
Query: 157 VSRPHPVKGECLYCFITPAGGATFN-------QELVKQLKQQVREKIGPFAMPDVIQHAP 209
V + G+ + F+ ++++ Q++ K L VR+ IGPFA P +I
Sbjct: 534 VGFNDDLTGQAVAAFVVLKNKSSWSTATDDELQDIKKHLVFTVRKDIGPFAAPKLIILVD 593
Query: 210 RLPKTRSGKIMRRVLRKVAVND-REVGDKSTLADEDVVDELFQN 252
LPKTRSGKIMRR+LRK+ + ++GD STL++ +V L +
Sbjct: 594 DLPKTRSGKIMRRILRKILAGESDQLGDVSTLSNPGIVRHLIDS 637
>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis)
[TaxId: 7054]}
Length = 541
Score = 122 bits (306), Expect = 2e-32
Identities = 26/138 (18%), Positives = 56/138 (40%), Gaps = 19/138 (13%)
Query: 98 ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFT-EVEACLASHPDVSEAAV 156
A DED + ++ R+ ++ G+ +V E+E+ L HP++ +A V
Sbjct: 421 AYWDEDEHFFIVDRLKSLIKYKGY--------------QVAPAELESILLQHPNIFDAGV 466
Query: 157 VSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAM-PDVIQHAPRLPKTR 215
P GE + G T ++ ++ V ++ + +PK
Sbjct: 467 AGLPDDDAGELPAAVVVLEHGKTMTEK---EIVDYVASQVTTAKKLRGGVVFVDEVPKGL 523
Query: 216 SGKIMRRVLRKVAVNDRE 233
+GK+ R +R++ + ++
Sbjct: 524 TGKLDARKIREILIKAKK 541
>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin
synthetase 1 {Bacillus brevis [TaxId: 1393]}
Length = 514
Score = 120 bits (302), Expect = 5e-32
Identities = 32/129 (24%), Positives = 53/129 (41%), Gaps = 20/129 (15%)
Query: 98 ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFT-EVEACLASHPDVSEAAV 156
AR DG + GR+D+ + + GH +V EVE+ L H +SE AV
Sbjct: 399 ARWLSDGNIEYLGRIDNQVKIRGH--------------RVELEEVESILLKHMYISETAV 444
Query: 157 VSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRS 216
+ L + ++QL+Q E++ + +P ++P T +
Sbjct: 445 SVHKDHQEQPYLCAYFVSEKHIP-----LEQLRQFSSEELPTYMIPSYFIQLDKMPLTSN 499
Query: 217 GKIMRRVLR 225
GKI R+ L
Sbjct: 500 GKIDRKQLP 508
>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus
subtilis [TaxId: 1423]}
Length = 536
Score = 120 bits (301), Expect = 8e-32
Identities = 41/131 (31%), Positives = 59/131 (45%), Gaps = 18/131 (13%)
Query: 99 RRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFT-EVEACLASHPDVSEAAVV 157
R DGY+ V GR D +N G KV EVE L +HP V +AA+V
Sbjct: 416 RLTRDGYIVVEGRAKDQINRGGE--------------KVAAEEVENHLLAHPAVHDAAMV 461
Query: 158 SRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRSG 217
S P GE FI P A EL L+++ + + +PD ++ P+T G
Sbjct: 462 SMPDQFLGERSCVFIIPRDEAPKAAELKAFLRERG---LAAYKIPDRVEFVESFPQTGVG 518
Query: 218 KIMRRVLRKVA 228
K+ ++ LR+
Sbjct: 519 KVSKKALREAI 529
>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168
{Thermus thermophilus [TaxId: 274]}
Length = 534
Score = 120 bits (301), Expect = 9e-32
Identities = 38/134 (28%), Positives = 62/134 (46%), Gaps = 18/134 (13%)
Query: 98 ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFT-EVEACLASHPDVSEAAV 156
A DE+GY+ + R+ D++ G + + ++E L HP V EAAV
Sbjct: 413 AVWDEEGYVEIKDRLKDLIKSGGE--------------WISSVDLENALMGHPKVKEAAV 458
Query: 157 VSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRS 216
V+ PHP E + P G +EL + L ++ + +PD A +P+T +
Sbjct: 459 VAIPHPKWQERPLAVVVPRGEKPTPEELNEHL---LKAGFAKWQLPDAYVFAEEIPRTSA 515
Query: 217 GKIMRRVLRKVAVN 230
GK ++R LR+ N
Sbjct: 516 GKFLKRALREQYKN 529
>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes
sp. [TaxId: 512]}
Length = 503
Score = 113 bits (282), Expect = 2e-29
Identities = 29/130 (22%), Positives = 51/130 (39%), Gaps = 17/130 (13%)
Query: 98 ARRDEDGYLWVTGRVDDMLNVSGHLMTVYFFGSYCSTAKVFT-EVEACLASHPDVSEAAV 156
A +G + + GRVDDM+ G + E+E L + P V+E V
Sbjct: 387 AVWTPEGTVRILGRVDDMIISGGE--------------NIHPSEIERVLGTAPGVTEVVV 432
Query: 157 VSRPHPVKGECLYCFITPAGGATFNQELVKQLKQQVREKIGPFAMPDVIQHAPRLPKTRS 216
+ G+ + + P G T + + + + ++ F P +LPK
Sbjct: 433 IGLADQRWGQSVTACVVPRLGETLSADALDTFCR--SSELADFKRPKRYFILDQLPKNAL 490
Query: 217 GKIMRRVLRK 226
K++RR L +
Sbjct: 491 NKVLRRQLVQ 500
>d1wdds_ d.73.1.1 (S:) Ribulose 1,5-bisphosphate
carboxylase-oxygenase {Rice (Oryza sativa) [TaxId:
4530]}
Length = 122
Score = 27.1 bits (60), Expect = 1.2
Identities = 5/18 (27%), Positives = 9/18 (50%)
Query: 133 STAKVFTEVEACLASHPD 150
+V E+E ++PD
Sbjct: 78 DATQVLKELEEAKKAYPD 95
>d1kbva1 b.6.1.3 (A:13-163) Nitrite reductase, NIR {Neisseria
gonorrhoeae, AniA [TaxId: 485]}
Length = 151
Score = 27.3 bits (60), Expect = 1.2
Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 10/60 (16%)
Query: 3 RDYKGTVDITLPAR-------PGMERFSFTVLGQVTVPQISILEPRLGDDLNLTLSMNPT 55
RDY V + + G+E +T G V I + R GD + + S NP+
Sbjct: 21 RDYPAKVRVKMETVEKTMKMDDGVEYRYWTFDGDVPGRMIRV---REGDTVEVEFSNNPS 77
>d1svdm1 d.73.1.1 (M:3-110) Ribulose 1,5-bisphosphate
carboxylase-oxygenase {Halothiobacillus neapolitanus
[TaxId: 927]}
Length = 108
Score = 26.3 bits (58), Expect = 1.8
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 133 STAKVFTEVEACLASHPD 150
+ V E+EAC +++P
Sbjct: 66 NVDNVLAEIEACRSAYPT 83
>d1aoza1 b.6.1.3 (A:1-129) Ascorbate oxidase {Zucchini (Cucurbita
pepo var. medullosa) [TaxId: 3663]}
Length = 129
Score = 26.6 bits (58), Expect = 2.1
Identities = 18/90 (20%), Positives = 25/90 (27%), Gaps = 20/90 (22%)
Query: 3 RDYKGTVDITLPARPGMERFSFTVLGQVTVPQISILEPRLGDDLNLTLSMNPTLVGRRAM 62
R YK V+ A E + GQ P I GD + + L
Sbjct: 4 RHYKWEVEYMFWAPNCNENIVMGINGQFPGPTIRA---NAGDSVVVEL------------ 48
Query: 63 KSLKFQNTSKVRAQLLHGHNNFSFTTNNSD 92
N ++H H T +D
Sbjct: 49 -----TNKLHTEGVVIHWHGILQRGTPWAD 73
>d1bwvs_ d.73.1.1 (S:) Ribulose 1,5-bisphosphate
carboxylase-oxygenase {Galdieria partita [TaxId: 83374]}
Length = 138
Score = 26.0 bits (57), Expect = 3.5
Identities = 5/18 (27%), Positives = 8/18 (44%)
Query: 133 STAKVFTEVEACLASHPD 150
A V E+ AC + +
Sbjct: 60 DPAAVLFEINACRKARSN 77
>d1k8rb_ d.15.1.5 (B:) Protein kinase byr2 {Fission yeast
(Schizosaccharomyces pombe) [TaxId: 4896]}
Length = 95
Score = 25.1 bits (55), Expect = 3.8
Identities = 10/49 (20%), Positives = 19/49 (38%), Gaps = 9/49 (18%)
Query: 218 KIMRRVLRKVAVNDRE-----VGDKST---LADEDVVDELFQ-NRPEGN 257
K + L+K ++ D V S + +E+ F + PE +
Sbjct: 23 KTLAIALKKFSLEDASKFIVCVSQSSRIKLITEEEFKQICFNSSSPERD 71
>d1mo6a2 d.48.1.1 (A:270-329) RecA protein, C-terminal domain
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 60
Score = 24.2 bits (53), Expect = 3.8
Identities = 4/17 (23%), Positives = 14/17 (82%)
Query: 181 NQELVKQLKQQVREKIG 197
N ++ +++++++EK+G
Sbjct: 44 NADVADEIEKKIKEKLG 60
>d1q46a1 a.60.14.1 (A:89-175) Eukaryotic initiation factor 2alpha,
eIF2alpha, domain 2 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 87
Score = 25.1 bits (55), Expect = 4.1
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 226 KVAVNDREVGDKSTLADEDVVDELFQN 252
K+++ D V + +DV+DEL
Sbjct: 57 KLSIIDETVWEGIEPPSKDVLDELKNY 83
>d2fa8a1 c.47.1.23 (A:4-89) Hypothetical protein Atu0228
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 86
Score = 24.6 bits (54), Expect = 4.3
Identities = 10/41 (24%), Positives = 18/41 (43%), Gaps = 16/41 (39%)
Query: 174 PAGGATF----NQELV------------KQLKQQVREKIGP 198
P+ G F + ++ K+LKQ++R+ I P
Sbjct: 41 PSTGGLFEITVDGTIIWERKRDGGFPGPKELKQRIRDLIDP 81
>d1bxni_ d.73.1.1 (I:) Ribulose 1,5-bisphosphate
carboxylase-oxygenase {Alcaligenes eutrophus [TaxId:
106590]}
Length = 129
Score = 25.6 bits (56), Expect = 4.6
Identities = 3/18 (16%), Positives = 7/18 (38%)
Query: 133 STAKVFTEVEACLASHPD 150
A + E+ + P+
Sbjct: 60 DAAGILMEINNARNTFPN 77
>d1wxqa2 d.15.10.2 (A:320-395) GTP-binding protein PH0525
{Pyrococcus horikoshii [TaxId: 53953]}
Length = 76
Score = 24.3 bits (53), Expect = 6.0
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 226 KVAVNDREVGDKSTLADEDVV 246
A R VG+ L D+V
Sbjct: 51 INARTKRRVGEDYELQFNDIV 71
>d1vqqa2 d.175.1.1 (A:139-327) Penicillin binding protein 2a
(PBP2A), middle domain {Staphylococcus aureus [TaxId:
1280]}
Length = 189
Score = 25.1 bits (53), Expect = 7.9
Identities = 5/34 (14%), Positives = 9/34 (26%)
Query: 16 RPGMERFSFTVLGQVTVPQISILEPRLGDDLNLT 49
G + + + G D+ LT
Sbjct: 156 EDGYRVTIVDDNSNTIAHTLIEKKKKDGKDIQLT 189
>d1gk8i_ d.73.1.1 (I:) Ribulose 1,5-bisphosphate
carboxylase-oxygenase {Chlamydomonas reinhardtii [TaxId:
3055]}
Length = 126
Score = 24.4 bits (53), Expect = 8.4
Identities = 10/57 (17%), Positives = 17/57 (29%), Gaps = 8/57 (14%)
Query: 101 DEDGYLWVTGRVDDMLNVSGHLMTVY-------FFGSYCSTAKVFTEVEACLASHPD 150
+ Y+ + + Y FG +V E+ AC + PD
Sbjct: 47 ADKAYVSNESAIRFGSVSCLYYDNRYWTMWKLPMFGCR-DPMQVLREIVACTKAFPD 102
>d1rbli_ d.73.1.1 (I:) Ribulose 1,5-bisphosphate
carboxylase-oxygenase {Synechococcus sp., strain pcc
6301 [TaxId: 1131]}
Length = 109
Score = 24.4 bits (53), Expect = 8.4
Identities = 5/18 (27%), Positives = 9/18 (50%)
Query: 133 STAKVFTEVEACLASHPD 150
+ +V EV C + + D
Sbjct: 66 APQQVLDEVRECRSEYGD 83
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.135 0.397
Gapped
Lambda K H
0.267 0.0419 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 937,790
Number of extensions: 41462
Number of successful extensions: 144
Number of sequences better than 10.0: 1
Number of HSP's gapped: 129
Number of HSP's successfully gapped: 23
Length of query: 258
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 175
Effective length of database: 1,268,006
Effective search space: 221901050
Effective search space used: 221901050
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)