BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy12529
         (39 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation
 pdb|2P2Q|B Chain B, Acetyl-Coa Synthetase, R584e Mutation
          Length = 652

 Score = 38.9 bits (89), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 18/35 (51%), Positives = 25/35 (71%), Gaps = 1/35 (2%)

Query: 1   MRRVLRKVAVND-REVGDKSTLADEDVVDELFQNR 34
           MRR+LRK+A  D   +GD STLAD  VV++L + +
Sbjct: 611 MRRILRKIAAGDTSNLGDTSTLADPGVVEKLLEEK 645


>pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation
 pdb|2P2B|B Chain B, Acetyl-coa Synthetase, V386a Mutation
          Length = 652

 Score = 38.9 bits (89), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 18/35 (51%), Positives = 25/35 (71%), Gaps = 1/35 (2%)

Query: 1   MRRVLRKVAVND-REVGDKSTLADEDVVDELFQNR 34
           MRR+LRK+A  D   +GD STLAD  VV++L + +
Sbjct: 611 MRRILRKIAAGDTSNLGDTSTLADPGVVEKLLEEK 645


>pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation
 pdb|2P2J|B Chain B, Acetyl-Coa Synthetase, K609a Mutation
          Length = 652

 Score = 38.9 bits (89), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 18/35 (51%), Positives = 25/35 (71%), Gaps = 1/35 (2%)

Query: 1   MRRVLRKVAVND-REVGDKSTLADEDVVDELFQNR 34
           MRR+LRK+A  D   +GD STLAD  VV++L + +
Sbjct: 611 MRRILRKIAAGDTSNLGDTSTLADPGVVEKLLEEK 645


>pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation
 pdb|2P2M|B Chain B, Acetyl-Coa Synthetase, R194a Mutation
          Length = 652

 Score = 38.9 bits (89), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 18/35 (51%), Positives = 25/35 (71%), Gaps = 1/35 (2%)

Query: 1   MRRVLRKVAVND-REVGDKSTLADEDVVDELFQNR 34
           MRR+LRK+A  D   +GD STLAD  VV++L + +
Sbjct: 611 MRRILRKIAAGDTSNLGDTSTLADPGVVEKLLEEK 645


>pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation
 pdb|2P20|B Chain B, Acetyl-Coa Synthetase, R584a Mutation
          Length = 652

 Score = 38.9 bits (89), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 18/35 (51%), Positives = 25/35 (71%), Gaps = 1/35 (2%)

Query: 1   MRRVLRKVAVND-REVGDKSTLADEDVVDELFQNR 34
           MRR+LRK+A  D   +GD STLAD  VV++L + +
Sbjct: 611 MRRILRKIAAGDTSNLGDTSTLADPGVVEKLLEEK 645


>pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
           Coa Bound
 pdb|2P2F|B Chain B, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
           Coa Bound
          Length = 652

 Score = 38.9 bits (89), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 18/35 (51%), Positives = 25/35 (71%), Gaps = 1/35 (2%)

Query: 1   MRRVLRKVAVND-REVGDKSTLADEDVVDELFQNR 34
           MRR+LRK+A  D   +GD STLAD  VV++L + +
Sbjct: 611 MRRILRKIAAGDTSNLGDTSTLADPGVVEKLLEEK 645


>pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609
 pdb|1PG3|B Chain B, Acetyl Coa Synthetase, Acetylated On Lys609
 pdb|1PG4|A Chain A, Acetyl Coa Synthetase, Salmonella Enterica
 pdb|1PG4|B Chain B, Acetyl Coa Synthetase, Salmonella Enterica
          Length = 652

 Score = 38.9 bits (89), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 18/35 (51%), Positives = 25/35 (71%), Gaps = 1/35 (2%)

Query: 1   MRRVLRKVAVND-REVGDKSTLADEDVVDELFQNR 34
           MRR+LRK+A  D   +GD STLAD  VV++L + +
Sbjct: 611 MRRILRKIAAGDTSNLGDTSTLADPGVVEKLLEEK 645


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.315    0.135    0.361 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,109,720
Number of Sequences: 62578
Number of extensions: 24188
Number of successful extensions: 28
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 21
Number of HSP's gapped (non-prelim): 7
length of query: 39
length of database: 14,973,337
effective HSP length: 13
effective length of query: 26
effective length of database: 14,159,823
effective search space: 368155398
effective search space used: 368155398
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 45 (21.9 bits)