Query psy12529
Match_columns 39
No_of_seqs 112 out of 990
Neff 5.8
Searched_HMMs 29240
Date Fri Aug 16 21:39:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12529.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12529hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ry2_A Acetyl-coenzyme A synth 97.5 2.6E-05 8.9E-10 50.2 1.4 34 1-34 627-661 (663)
2 1pg4_A Acetyl-COA synthetase; 97.2 0.00017 5.8E-09 46.2 2.5 34 1-34 611-645 (652)
3 2kw3_C Regulatory factor X-ass 32.6 24 0.00084 17.3 1.5 15 18-32 26-40 (62)
4 3tqk_A Phospho-2-dehydro-3-deo 31.5 34 0.0012 21.6 2.4 33 2-34 37-73 (346)
5 3ose_A Serine/threonine-protei 25.9 23 0.00078 18.7 0.8 24 15-38 31-54 (120)
6 2dnv_A Chromobox protein homol 23.2 58 0.002 15.1 1.9 19 19-37 46-64 (64)
7 1y0n_A Hypothetical UPF0270 pr 23.0 46 0.0016 16.8 1.6 35 2-38 16-51 (78)
8 3f42_A Protein HP0035; helicob 22.0 59 0.002 16.8 1.9 15 17-31 56-70 (99)
9 3nbk_A Phosphopantetheine aden 20.3 1.3E+02 0.0043 16.8 3.5 28 4-34 149-176 (177)
10 1nh2_B Transcription initiatio 17.9 42 0.0014 15.6 0.7 12 23-34 30-41 (53)
No 1
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=97.52 E-value=2.6e-05 Score=50.20 Aligned_cols=34 Identities=38% Similarity=0.684 Sum_probs=19.7
Q ss_pred ChHHHHHHHhCCC-CCCCCCccCCHHHHHHHHhhc
Q psy12529 1 MRRVLRKVAVNDR-EVGDKSTLADEDVVDELFQNR 34 (39)
Q Consensus 1 mRr~Lr~i~~g~~-~~gd~sTl~dp~vl~~I~~~~ 34 (39)
+|+.||+++.++. +++|+|||+||+++++|++.+
T Consensus 627 ~R~~L~~~~~~~~~~~~~~~~l~~p~~~~~~~~~~ 661 (663)
T 1ry2_A 627 MRRILRKILAGESDQLGDVSTLSNPGIVRHLIDSV 661 (663)
T ss_dssp CHHHHHHSCC-------------CCHHHHHHHHTT
T ss_pred hHHHHHHHHcCCCCCCCCcccccCHHHHHHHHHHh
Confidence 6999999998631 589999999999999998754
No 2
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=97.21 E-value=0.00017 Score=46.19 Aligned_cols=34 Identities=53% Similarity=0.889 Sum_probs=21.5
Q ss_pred ChHHHHHHHhCCC-CCCCCCccCCHHHHHHHHhhc
Q psy12529 1 MRRVLRKVAVNDR-EVGDKSTLADEDVVDELFQNR 34 (39)
Q Consensus 1 mRr~Lr~i~~g~~-~~gd~sTl~dp~vl~~I~~~~ 34 (39)
+|+.||+++.++. +++|+|||+||+++++|++..
T Consensus 611 ~R~~L~~~~~~~~~~~~~~~~l~~p~~~~~~~~~~ 645 (652)
T 1pg4_A 611 MRRILRKIAAGDTSNLGDTSTLADPGVVEKLLEEK 645 (652)
T ss_dssp CHHHHHHHHHTC----------CCTTHHHHHHHHH
T ss_pred hHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHh
Confidence 5999999999731 689999999999999997653
No 3
>2kw3_C Regulatory factor X-associated protein; mhcii, RFX5, rfxap, enhanceosome, DNA binding protein; NMR {Homo sapiens}
Probab=32.64 E-value=24 Score=17.28 Aligned_cols=15 Identities=33% Similarity=0.259 Sum_probs=12.1
Q ss_pred CCccCCHHHHHHHHh
Q psy12529 18 KSTLADEDVVDELFQ 32 (39)
Q Consensus 18 ~sTl~dp~vl~~I~~ 32 (39)
.|-|.+|||+..+..
T Consensus 26 ~SLLRsPEVI~Fl~~ 40 (62)
T 2kw3_C 26 LSLLRSPEVVQFLQK 40 (62)
T ss_dssp HHTTCCHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHH
Confidence 467899999998864
No 4
>3tqk_A Phospho-2-dehydro-3-deoxyheptonate aldolase; transferase; 2.30A {Francisella tularensis}
Probab=31.54 E-value=34 Score=21.64 Aligned_cols=33 Identities=12% Similarity=0.176 Sum_probs=24.8
Q ss_pred hHHHHHHHhCCCC----CCCCCccCCHHHHHHHHhhc
Q psy12529 2 RRVLRKVAVNDRE----VGDKSTLADEDVVDELFQNR 34 (39)
Q Consensus 2 Rr~Lr~i~~g~~~----~gd~sTl~dp~vl~~I~~~~ 34 (39)
|+.+++|..|+.+ +-.|-+++||+.+-+..+.+
T Consensus 37 R~~i~~Il~G~d~rllVIaGPCSied~eq~leyA~~L 73 (346)
T 3tqk_A 37 RKEIANIIHGNDDRVAVVVGPCSIHDPAAAIEYATKL 73 (346)
T ss_dssp HHHHHHHHHTSSCSEEEEEECSSCSCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCEEEEEecCccCCHHHHHHHHHHH
Confidence 7789999998531 24689999999887765443
No 5
>3ose_A Serine/threonine-protein kinase MARK1; kinase associated-1(Ka1) domain, transferase, lipid binding membrane association; 1.70A {Homo sapiens} SCOP: d.129.6.1 PDB: 1ul7_A
Probab=25.86 E-value=23 Score=18.68 Aligned_cols=24 Identities=17% Similarity=0.257 Sum_probs=17.5
Q ss_pred CCCCCccCCHHHHHHHHhhcCCCC
Q psy12529 15 VGDKSTLADEDVVDELFQNRPEGN 38 (39)
Q Consensus 15 ~gd~sTl~dp~vl~~I~~~~~~~~ 38 (39)
++-+|+..-.+++.+|..++.+-+
T Consensus 31 v~tTS~~~P~eIm~eI~rvL~~~g 54 (120)
T 3ose_A 31 MKTTSSMDPNDMMREIRKVLDANN 54 (120)
T ss_dssp CCCEECSCHHHHHHHHHHHHHHTT
T ss_pred ecCcccCCHHHHHHHHHHHHHHCC
Confidence 556677777788899988876544
No 6
>2dnv_A Chromobox protein homolog 8; chromo domain, histone H3 tail, choromatin organization modifier, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.34.13.2
Probab=23.16 E-value=58 Score=15.14 Aligned_cols=19 Identities=11% Similarity=0.265 Sum_probs=14.4
Q ss_pred CccCCHHHHHHHHhhcCCC
Q psy12529 19 STLADEDVVDELFQNRPEG 37 (39)
Q Consensus 19 sTl~dp~vl~~I~~~~~~~ 37 (39)
+.|.+|+.|++..+...+|
T Consensus 46 ~~l~~~~li~~f~~~~~sg 64 (64)
T 2dnv_A 46 ENILDARLLAAFESGPSSG 64 (64)
T ss_dssp TTCCCHHHHHHHHCCTTCC
T ss_pred hHCCCHHHHHHHHHHccCC
Confidence 4678888888887776665
No 7
>1y0n_A Hypothetical UPF0270 protein PA3463; MCSG, midwest center for structural genomics, protein struct initiative, PSI, structural genomics; 2.00A {Pseudomonas aeruginosa} SCOP: d.291.1.1
Probab=23.01 E-value=46 Score=16.82 Aligned_cols=35 Identities=17% Similarity=0.330 Sum_probs=18.5
Q ss_pred hHHHHHHHhCC-CCCCCCCccCCHHHHHHHHhhcCCCC
Q psy12529 2 RRVLRKVAVND-REVGDKSTLADEDVVDELFQNRPEGN 38 (39)
Q Consensus 2 Rr~Lr~i~~g~-~~~gd~sTl~dp~vl~~I~~~~~~~~ 38 (39)
+++|+..+..+ .++|+-.++ .+-+++++..+++|.
T Consensus 16 ~nLIeefv~RegtDyg~E~sL--~~kv~qv~~qL~~Ge 51 (78)
T 1y0n_A 16 NNLLEDFVTREGTDNGDETPL--DVRVERARHALRRGE 51 (78)
T ss_dssp HHHHHHHHHCC-------CCH--HHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhcccccccccccH--HHHHHHHHHHHHcCC
Confidence 56777777742 146653343 355677777777774
No 8
>3f42_A Protein HP0035; helicobacter pylori unknown-function, structural genomics, P protein structure initiative; HET: MSE; 1.78A {Helicobacter pylori}
Probab=21.96 E-value=59 Score=16.76 Aligned_cols=15 Identities=27% Similarity=0.459 Sum_probs=11.9
Q ss_pred CCCccCCHHHHHHHH
Q psy12529 17 DKSTLADEDVVDELF 31 (39)
Q Consensus 17 d~sTl~dp~vl~~I~ 31 (39)
||+-++|++.++.+.
T Consensus 56 dp~~~eD~E~LeDLI 70 (99)
T 3f42_A 56 DDSLLEDKEAMQIYL 70 (99)
T ss_dssp CGGGGGCHHHHHHHH
T ss_pred CHHHhCCHHHHHHHH
Confidence 677779999998764
No 9
>3nbk_A Phosphopantetheine adenylyltransferase; PPAT, PHP; HET: PNS; 1.58A {Mycobacterium tuberculosis} PDB: 3nba_A* 3pnb_A* 4e1a_A 3lcj_A 3rba_A* 1tfu_A* 3rff_A 3rhs_A* 3uc5_A*
Probab=20.28 E-value=1.3e+02 Score=16.84 Aligned_cols=28 Identities=32% Similarity=0.321 Sum_probs=21.6
Q ss_pred HHHHHHhCCCCCCCCCccCCHHHHHHHHhhc
Q psy12529 4 VLRKVAVNDREVGDKSTLADEDVVDELFQNR 34 (39)
Q Consensus 4 ~Lr~i~~g~~~~gd~sTl~dp~vl~~I~~~~ 34 (39)
.+|+++.-+ ||++.+--|.+.+.|++.+
T Consensus 149 ~IRe~~~~g---gdv~~lVP~~V~~~l~~~~ 176 (177)
T 3nbk_A 149 LAKEVAMLG---GDVSELLPEPVNRRLRDRL 176 (177)
T ss_dssp HHHHHHHTT---CCCGGGSCHHHHHHHHHHH
T ss_pred HHHHHHHcC---CChhHhCCHHHHHHHHHHh
Confidence 577777632 6889999999999987754
No 10
>1nh2_B Transcription initiation factor IIA large chain; transcription/DNA; HET: 5IU; 1.90A {Saccharomyces cerevisiae} SCOP: a.32.1.1 PDB: 1ytf_B*
Probab=17.91 E-value=42 Score=15.61 Aligned_cols=12 Identities=25% Similarity=0.324 Sum_probs=10.0
Q ss_pred CHHHHHHHHhhc
Q psy12529 23 DEDVVDELFQNR 34 (39)
Q Consensus 23 dp~vl~~I~~~~ 34 (39)
|+.++.+|+..+
T Consensus 30 de~vL~eLk~~W 41 (53)
T 1nh2_B 30 DEQTLQDLKNIW 41 (53)
T ss_dssp CHHHHHHHHHHH
T ss_pred cHHHHHHHHHHH
Confidence 889999998765
Done!