RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy12529
(39 letters)
>gnl|CDD|234677 PRK00174, PRK00174, acetyl-CoA synthetase; Provisional.
Length = 637
Score = 55.9 bits (136), Expect = 1e-11
Identities = 18/36 (50%), Positives = 25/36 (69%)
Query: 1 MRRVLRKVAVNDREVGDKSTLADEDVVDELFQNRPE 36
MRR+LRK+A + +GD STLAD VV++L + R
Sbjct: 600 MRRILRKIAEGEEILGDTSTLADPSVVEKLIEARQN 635
>gnl|CDD|233770 TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase. This model
describes acetate-CoA ligase (EC 6.2.1.1), also called
acetyl-CoA synthetase and acetyl-activating enzyme. It
catalyzes the reaction ATP + acetate + CoA = AMP +
diphosphate + acetyl-CoA and belongs to the family of
AMP-binding enzymes described by pfam00501.
Length = 625
Score = 46.5 bits (111), Expect = 2e-08
Identities = 18/34 (52%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Query: 1 MRRVLRKVAVNDRE-VGDKSTLADEDVVDELFQN 33
MRR+LRK+A + E +GD STL D VV+EL +
Sbjct: 592 MRRLLRKIAAGEEEILGDTSTLEDPSVVEELIEA 625
>gnl|CDD|213313 cd05966, ACS, Acetyl-CoA synthetase (also known as acetate-CoA
ligase and acetyl-activating enzyme). Acetyl-CoA
synthetase (ACS) catalyzes the formation of acetyl-CoA
from acetate, CoA, and ATP. Synthesis of acetyl-CoA is
carried out in a two-step reaction. In the first step,
the enzyme catalyzes the synthesis of acetyl-AMP
intermediate from acetate and ATP. In the second step,
acetyl-AMP reacts with CoA to produce acetyl-CoA. This
enzyme is widely present in all living organisms. The
activity of this enzyme is crucial for maintaining the
required levels of acetyl-CoA, a key intermediate in
many important biosynthetic and catabolic processes.
Acetyl-CoA is used in the biosynthesis of glucose, fatty
acids, and cholesterol. It can also be used in the
production of energy in the citric acid cycle.
Eukaryotes typically have two isoforms of acetyl-CoA
synthetase, a cytosolic form involved in biosynthetic
processes and a mitochondrial form primarily involved in
energy generation.
Length = 602
Score = 44.5 bits (106), Expect = 1e-07
Identities = 14/23 (60%), Positives = 18/23 (78%)
Query: 1 MRRVLRKVAVNDREVGDKSTLAD 23
MRR+LRK+A + E+GD STL D
Sbjct: 580 MRRILRKIAAGEEELGDTSTLED 602
>gnl|CDD|215353 PLN02654, PLN02654, acetate-CoA ligase.
Length = 666
Score = 41.8 bits (98), Expect = 1e-06
Identities = 19/31 (61%), Positives = 23/31 (74%), Gaps = 1/31 (3%)
Query: 1 MRRVLRKVAVND-REVGDKSTLADEDVVDEL 30
MRR+LRK+A E+GD STLAD VVD+L
Sbjct: 630 MRRILRKIASRQLDELGDTSTLADPGVVDQL 660
>gnl|CDD|221971 pfam13193, DUF4009, Domain of unknown function (DUF4009). This
is a small domain that is found C terminal to
pfam00501. It has a central beta sheet core that is
flanked by alpha helices.
Length = 43
Score = 28.2 bits (64), Expect = 0.018
Identities = 11/23 (47%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Query: 1 MRRVLRKVAVNDREVGDKSTLAD 23
+RR+LR +A ++GD STL D
Sbjct: 22 LRRLLRAIA-LGEDLGDLSTLED 43
>gnl|CDD|213314 cd05967, PrpE, Propionyl-CoA synthetase (PrpE). PrpE catalyzes the
first step of the 2-methylcitric acid cycle for
propionate catabolism. It activates propionate to
propionyl-CoA in a two-step reaction, which proceeds
through a propionyl-AMP intermediate and requires ATP
and Mg2+. In Salmonella enterica, the PrpE protein is
required for growth of S. enterica on propionate and can
substitute for the acetyl-CoA synthetase (Acs) enzyme
during growth on acetate. PrpE can also activate
acetate, 3HP, and butyrate to their corresponding
CoA-thioesters, although with less efficiency.
Length = 607
Score = 29.2 bits (66), Expect = 0.033
Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 1 MRRVLRKVAVNDREVGDKSTLADEDVVDEL 30
+RR LRK+A + + D ST+ D V+DE+
Sbjct: 579 LRRTLRKIA-DGEDYKDPSTIEDPSVLDEI 607
>gnl|CDD|224828 COG1916, COG1916, Uncharacterized homolog of PrgY (pheromone
shutdown protein) [Function unknown].
Length = 388
Score = 23.8 bits (52), Expect = 2.3
Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 5/30 (16%)
Query: 5 LRKVAVNDREVGDKSTLADEDVVDELFQNR 34
RK V D E TLAD+ +++N+
Sbjct: 333 YRKPTVKDFE-----TLADDLSFKGMYKNK 357
>gnl|CDD|220758 pfam10443, RNA12, RNA12 protein. This family includes RNA12 from
S. cerevisiae. That protein contains an RRM domain. This
region is C-terminal to that and includes a P-loop motif
suggesting this region binds to NTP. The RNA12 proteins
is involved in pre-rRNA maturation.
Length = 428
Score = 23.8 bits (52), Expect = 2.8
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 4 VLRKVAVNDREVGDKSTLADEDVVDE 29
L+K+A+ + + DK E+ E
Sbjct: 118 ALKKIALEEYKKEDKDANLKEEDYLE 143
>gnl|CDD|237518 PRK13811, PRK13811, orotate phosphoribosyltransferase; Provisional.
Length = 170
Score = 23.2 bits (50), Expect = 3.9
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 3 RVLRKVAVNDREVGDKSTLADEDV 26
V V V DRE G + LA+ +
Sbjct: 133 VVDDVVTVVDREQGAEELLAELGI 156
>gnl|CDD|178836 PRK00066, ldh, L-lactate dehydrogenase; Reviewed.
Length = 315
Score = 22.5 bits (49), Expect = 6.9
Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 8/47 (17%)
Query: 1 MRRVLRKVA-VNDREVGD-------KSTLADEDVVDELFQNRPEGNV 39
M++ KV V D VG +ADE V+ ++ + + EG+
Sbjct: 2 MKKQHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDA 48
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.315 0.135 0.361
Gapped
Lambda K H
0.267 0.0868 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 1,999,912
Number of extensions: 104041
Number of successful extensions: 99
Number of sequences better than 10.0: 1
Number of HSP's gapped: 97
Number of HSP's successfully gapped: 10
Length of query: 39
Length of database: 10,937,602
Length adjustment: 13
Effective length of query: 26
Effective length of database: 10,361,000
Effective search space: 269386000
Effective search space used: 269386000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (23.9 bits)