RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy12529
         (39 letters)



>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming,
           thioester-forming, ligase; HET: COA PRX; 1.75A
           {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A*
           2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
          Length = 652

 Score = 58.0 bits (141), Expect = 1e-12
 Identities = 18/37 (48%), Positives = 25/37 (67%), Gaps = 1/37 (2%)

Query: 1   MRRVLRKVAVND-REVGDKSTLADEDVVDELFQNRPE 36
           MRR+LRK+A  D   +GD STLAD  VV++L + +  
Sbjct: 611 MRRILRKIAAGDTSNLGDTSTLADPGVVEKLLEEKQA 647


>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP
           forming, related to firefly luciferase, ligase; HET:
           AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
          Length = 663

 Score = 56.1 bits (136), Expect = 6e-12
 Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 1/35 (2%)

Query: 1   MRRVLRKVAVNDRE-VGDKSTLADEDVVDELFQNR 34
           MRR+LRK+   + + +GD STL++  +V  L  + 
Sbjct: 627 MRRILRKILAGESDQLGDVSTLSNPGIVRHLIDSV 661


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 29.1 bits (64), Expect = 0.024
 Identities = 6/45 (13%), Positives = 16/45 (35%), Gaps = 10/45 (22%)

Query: 5   LRKVAVNDREVGD----------KSTLADEDVVDELFQNRPEGNV 39
           LR+  +  R   +          K+ +A +  +    Q + +  +
Sbjct: 140 LRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKI 184


>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein,
          protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
          Length = 89

 Score = 23.8 bits (52), Expect = 1.1
 Identities = 4/20 (20%), Positives = 5/20 (25%)

Query: 8  VAVNDREVGDKSTLADEDVV 27
          V  N          A  D +
Sbjct: 61 VLRNGEAAALGEATAAGDEL 80


>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics,
          PSI, protein structure INI southeast collaboratory for
          structural genomics; 1.51A {Pyrococcus furiosus} SCOP:
          d.15.3.1
          Length = 98

 Score = 21.9 bits (47), Expect = 7.4
 Identities = 10/21 (47%), Positives = 11/21 (52%)

Query: 7  KVAVNDREVGDKSTLADEDVV 27
           +AVN R V     L D DVV
Sbjct: 69 NIAVNGRYVSWDEELKDGDVV 89


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.315    0.135    0.361 

Gapped
Lambda     K      H
   0.267   0.0723    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 602,082
Number of extensions: 20133
Number of successful extensions: 41
Number of sequences better than 10.0: 1
Number of HSP's gapped: 39
Number of HSP's successfully gapped: 5
Length of query: 39
Length of database: 6,701,793
Length adjustment: 13
Effective length of query: 26
Effective length of database: 6,338,820
Effective search space: 164809320
Effective search space used: 164809320
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 51 (23.4 bits)