RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12529
         (39 letters)



>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica
           [TaxId: 28901]}
          Length = 643

 Score = 40.8 bits (95), Expect = 5e-07
 Identities = 18/35 (51%), Positives = 25/35 (71%), Gaps = 1/35 (2%)

Query: 1   MRRVLRKVAVND-REVGDKSTLADEDVVDELFQNR 34
           MRR+LRK+A  D   +GD STLAD  VV++L + +
Sbjct: 607 MRRILRKIAAGDTSNLGDTSTLADPGVVEKLLEEK 641


>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 640

 Score = 36.4 bits (83), Expect = 2e-05
 Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 1/34 (2%)

Query: 1   MRRVLRKVAVND-REVGDKSTLADEDVVDELFQN 33
           MRR+LRK+   +  ++GD STL++  +V  L  +
Sbjct: 604 MRRILRKILAGESDQLGDVSTLSNPGIVRHLIDS 637


>d1q46a1 a.60.14.1 (A:89-175) Eukaryotic initiation factor 2alpha,
          eIF2alpha, domain 2 {Baker's yeast (Saccharomyces
          cerevisiae) [TaxId: 4932]}
          Length = 87

 Score = 22.7 bits (49), Expect = 1.2
 Identities = 8/27 (29%), Positives = 14/27 (51%)

Query: 7  KVAVNDREVGDKSTLADEDVVDELFQN 33
          K+++ D  V +      +DV+DEL   
Sbjct: 57 KLSIIDETVWEGIEPPSKDVLDELKNY 83


>d1wxqa2 d.15.10.2 (A:320-395) GTP-binding protein PH0525
          {Pyrococcus horikoshii [TaxId: 53953]}
          Length = 76

 Score = 22.4 bits (48), Expect = 1.4
 Identities = 7/21 (33%), Positives = 9/21 (42%)

Query: 7  KVAVNDREVGDKSTLADEDVV 27
            A   R VG+   L   D+V
Sbjct: 51 INARTKRRVGEDYELQFNDIV 71


>d1fxza2 b.82.1.2 (A:297-470) Seed storage 7S protein {Soybean
           (Glycine max), proglycinin [TaxId: 3847]}
          Length = 174

 Score = 22.2 bits (47), Expect = 2.1
 Identities = 4/30 (13%), Positives = 8/30 (26%)

Query: 8   VAVNDREVGDKSTLADEDVVDELFQNRPEG 37
           +     EV   +         ++  N P  
Sbjct: 137 LNALPEEVIQHTFNLKSQQARQIKNNNPFK 166


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.315    0.135    0.361 

Gapped
Lambda     K      H
   0.267   0.0684    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 136,310
Number of extensions: 3610
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 6
Length of query: 39
Length of database: 2,407,596
Length adjustment: 12
Effective length of query: 27
Effective length of database: 2,242,836
Effective search space: 60556572
Effective search space used: 60556572
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 47 (22.0 bits)