Query psy12530
Match_columns 189
No_of_seqs 63 out of 65
Neff 2.7
Searched_HMMs 46136
Date Fri Aug 16 21:41:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12530.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12530hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3684|consensus 100.0 1.6E-37 3.6E-42 286.5 5.1 87 74-189 317-403 (489)
2 PF02888 CaMBD: Calmodulin bin 99.8 1.1E-20 2.3E-25 140.1 3.2 49 112-189 1-49 (77)
3 KOG3684|consensus 97.8 1.8E-05 3.8E-10 75.0 4.1 76 79-187 318-393 (489)
4 PF02888 CaMBD: Calmodulin bin 97.7 2E-05 4.4E-10 59.0 2.4 20 141-160 1-20 (77)
5 PF11166 DUF2951: Protein of u 36.7 17 0.00037 28.8 1.0 21 72-93 72-92 (98)
6 PF02492 cobW: CobW/HypB/UreG, 35.5 18 0.00039 28.6 0.9 20 75-94 3-22 (178)
7 KOG2743|consensus 34.8 18 0.00039 34.3 0.9 58 72-134 57-119 (391)
8 PF12301 CD99L2: CD99 antigen 32.5 36 0.00078 28.7 2.3 32 74-109 114-145 (169)
9 PF13738 Pyr_redox_3: Pyridine 27.6 22 0.00049 27.2 0.2 31 78-113 170-200 (203)
10 PF09040 H-K_ATPase_N: Gastric 27.4 20 0.00043 24.5 -0.1 9 56-64 30-38 (41)
11 PF13450 NAD_binding_8: NAD(P) 25.8 37 0.00081 23.3 1.1 18 80-97 1-18 (68)
12 COG0523 Putative GTPases (G3E 25.8 34 0.00073 30.9 1.1 23 75-97 4-26 (323)
13 TIGR02475 CobW cobalamin biosy 23.9 29 0.00063 31.1 0.3 22 73-94 5-26 (341)
14 PRK11537 putative GTP-binding 21.1 36 0.00077 30.3 0.3 22 73-94 5-26 (318)
15 KOG1419|consensus 20.9 23 0.0005 35.7 -1.0 22 114-135 333-354 (654)
16 PRK02971 4-amino-4-deoxy-L-ara 20.5 57 0.0012 25.6 1.3 29 75-103 50-78 (129)
No 1
>KOG3684|consensus
Probab=100.00 E-value=1.6e-37 Score=286.47 Aligned_cols=87 Identities=66% Similarity=0.958 Sum_probs=82.3
Q ss_pred cchhhhhhcchhhHHHHHHhhhccccccchhhhhhhhhchhhhHHHHHHHHHhHhHhhhhhhhhhhhhhhchhhhhHHHH
Q psy12530 74 SWIRPCYLREGCTALLVAVVSRKMELTRAEKHVHNFMMDTQLTKRLKNAAANVLRETWLIYKHTRLVKRVNAGRLKNAAA 153 (189)
Q Consensus 74 ~~~~t~~~G~gcTAllVAVvaRKLELTraEKHVhnFMmdtqLTKrvKnAAAnVLRETWliyKhTRlvD~v~tRR~k~aAa 153 (189)
-+|.|||||+||||+|||||+||||||+|||||||||||+|||||+||||||||||||+||||
T Consensus 317 v~l~tGivGa~~sallvAvisRKLeLt~aEKhVhNFMmDtqLTk~~KnAAA~VLqeTW~i~K~----------------- 379 (489)
T KOG3684|consen 317 VALLTGIVGAGCSSLLVAVIARKLELTKAEKHVHNFMMDTQLTKEHKNAAANVLQETWLIYKH----------------- 379 (489)
T ss_pred HHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------
Confidence 589999999999999999999999999999999999999999999999999999999888755
Q ss_pred HHHHHHHHHhhhhhhhhccCcchhhhhhhhhhhhhC
Q psy12530 154 NVLRETWLIYKHTRLVKRVNAGRVRTHQRKFLLAIY 189 (189)
Q Consensus 154 ~vLrEaw~~yKHtRL~~r~n~~~~R~HQRk~L~AI~ 189 (189)
+||++++|++++|+||||||.|||
T Consensus 380 ------------trl~~k~~~~rlR~hQRkfL~AI~ 403 (489)
T KOG3684|consen 380 ------------TKLVSKGDQARLRKHQRKFLQAIH 403 (489)
T ss_pred ------------hhhhcccchHHHHHHHHHHHHHHH
Confidence 577789999999999999999997
No 2
>PF02888 CaMBD: Calmodulin binding domain; InterPro: IPR004178 Small-conductance Ca2+-activated K+ channels (SK channels) are independent of voltage and gated solely by intracellular Ca2+. These membrane channels are heteromeric complexes that comprise pore-forming alpha-subunits and the Ca2+-binding protein calmodulin (CaM) []. CaM binds to the SK channel through this the CaM-binding domain (CaMBD), which is located in an intracellular region of the alpha-subunit immediately carboxy-terminal to the pore. Channel opening is triggered when Ca2+ binds the EF hands in the N-lobe of CaM. The structure of this domain complexed with CaM is known []. This domain forms an elongated dimer with a CaM molecule bound at each end; each CaM wraps around three alpha-helices, two from one CaMBD subunit and one from the other.; GO: 0005516 calmodulin binding, 0015269 calcium-activated potassium channel activity, 0006813 potassium ion transport, 0016021 integral to membrane; PDB: 1G4Y_B 1QX7_D 3SJQ_D 2PNV_A 1KKD_A.
Probab=99.81 E-value=1.1e-20 Score=140.11 Aligned_cols=49 Identities=82% Similarity=1.121 Sum_probs=41.3
Q ss_pred chhhhHHHHHHHHHhHhHhhhhhhhhhhhhhhchhhhhHHHHHHHHHHHHHhhhhhhhhccCcchhhhhhhhhhhhhC
Q psy12530 112 DTQLTKRLKNAAANVLRETWLIYKHTRLVKRVNAGRLKNAAANVLRETWLIYKHTRLVKRVNAGRVRTHQRKFLLAIY 189 (189)
Q Consensus 112 dtqLTKrvKnAAAnVLRETWliyKhTRlvD~v~tRR~k~aAa~vLrEaw~~yKHtRL~~r~n~~~~R~HQRk~L~AI~ 189 (189)
|+|||||+||||||||||||+||| |++|+++.|++++|+|||+||+|||
T Consensus 1 DtqltKr~K~aAAnVLretWliyK-----------------------------~tkl~~~~~~~r~R~HQRkfL~AI~ 49 (77)
T PF02888_consen 1 DTQLTKRVKNAAANVLRETWLIYK-----------------------------HTKLVKRRDHARVRKHQRKFLQAIH 49 (77)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHH-----------------------------HHHS-SSS-HHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHH-----------------------------hccccCccchhhHHHHHHHHHHHHH
Confidence 789999999999999988887765 5577789999999999999999996
No 3
>KOG3684|consensus
Probab=97.81 E-value=1.8e-05 Score=75.00 Aligned_cols=76 Identities=21% Similarity=0.180 Sum_probs=52.8
Q ss_pred hhhcchhhHHHHHHhhhccccccchhhhhhhhhchhhhHHHHHHHHHhHhHhhhhhhhhhhhhhhchhhhhHHHHHHHHH
Q psy12530 79 CYLREGCTALLVAVVSRKMELTRAEKHVHNFMMDTQLTKRLKNAAANVLRETWLIYKHTRLVKRVNAGRLKNAAANVLRE 158 (189)
Q Consensus 79 ~~~G~gcTAllVAVvaRKLELTraEKHVhnFMmdtqLTKrvKnAAAnVLRETWliyKhTRlvD~v~tRR~k~aAa~vLrE 158 (189)
|+..+.|.|...|++...+.......+.+.++ |-+|+|...++|+|++|||||||
T Consensus 318 ~l~tGivGa~~sallvAvisRKLeLt~aEKhV-------------------------hNFMmDtqLTk~~KnAAA~VLqe 372 (489)
T KOG3684|consen 318 ALLTGIVGAGCSSLLVAVIARKLELTKAEKHV-------------------------HNFMMDTQLTKEHKNAAANVLQE 372 (489)
T ss_pred HHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHH-------------------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455567777777777777666555554443 44799999999999999999999
Q ss_pred HHHHhhhhhhhhccCcchhhhhhhhhhhh
Q psy12530 159 TWLIYKHTRLVKRVNAGRVRTHQRKFLLA 187 (189)
Q Consensus 159 aw~~yKHtRL~~r~n~~~~R~HQRk~L~A 187 (189)
+| |..+..|. +++++...|+.
T Consensus 373 TW----~i~K~trl----~~k~~~~rlR~ 393 (489)
T KOG3684|consen 373 TW----LIYKHTKL----VSKGDQARLRK 393 (489)
T ss_pred HH----HHHHHhhh----hcccchHHHHH
Confidence 99 44433333 36666665554
No 4
>PF02888 CaMBD: Calmodulin binding domain; InterPro: IPR004178 Small-conductance Ca2+-activated K+ channels (SK channels) are independent of voltage and gated solely by intracellular Ca2+. These membrane channels are heteromeric complexes that comprise pore-forming alpha-subunits and the Ca2+-binding protein calmodulin (CaM) []. CaM binds to the SK channel through this the CaM-binding domain (CaMBD), which is located in an intracellular region of the alpha-subunit immediately carboxy-terminal to the pore. Channel opening is triggered when Ca2+ binds the EF hands in the N-lobe of CaM. The structure of this domain complexed with CaM is known []. This domain forms an elongated dimer with a CaM molecule bound at each end; each CaM wraps around three alpha-helices, two from one CaMBD subunit and one from the other.; GO: 0005516 calmodulin binding, 0015269 calcium-activated potassium channel activity, 0006813 potassium ion transport, 0016021 integral to membrane; PDB: 1G4Y_B 1QX7_D 3SJQ_D 2PNV_A 1KKD_A.
Probab=97.72 E-value=2e-05 Score=58.96 Aligned_cols=20 Identities=65% Similarity=0.870 Sum_probs=17.9
Q ss_pred hhhchhhhhHHHHHHHHHHH
Q psy12530 141 KRVNAGRLKNAAANVLRETW 160 (189)
Q Consensus 141 D~v~tRR~k~aAa~vLrEaw 160 (189)
|...++|++++|+|||||+|
T Consensus 1 DtqltKr~K~aAAnVLretW 20 (77)
T PF02888_consen 1 DTQLTKRVKNAAANVLRETW 20 (77)
T ss_dssp -CHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHH
Confidence 56778999999999999999
No 5
>PF11166 DUF2951: Protein of unknown function (DUF2951); InterPro: IPR021337 This family of proteins has no known function. It has a highly conserved sequence.
Probab=36.70 E-value=17 Score=28.77 Aligned_cols=21 Identities=24% Similarity=0.387 Sum_probs=17.4
Q ss_pred hccchhhhhhcchhhHHHHHHh
Q psy12530 72 EKSWIRPCYLREGCTALLVAVV 93 (189)
Q Consensus 72 ~~~~~~t~~~G~gcTAllVAVv 93 (189)
-|+|+ +|.+|+-.+|+++|+.
T Consensus 72 ~Kmwi-lGlvgTi~gsliia~l 92 (98)
T PF11166_consen 72 IKMWI-LGLVGTIFGSLIIALL 92 (98)
T ss_pred HHHHH-HHHHHHHHHHHHHHHH
Confidence 45664 6999999999999985
No 6
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=35.55 E-value=18 Score=28.62 Aligned_cols=20 Identities=25% Similarity=0.345 Sum_probs=17.7
Q ss_pred chhhhhhcchhhHHHHHHhh
Q psy12530 75 WIRPCYLREGCTALLVAVVS 94 (189)
Q Consensus 75 ~~~t~~~G~gcTAllVAVva 94 (189)
.++|||+|+|=|+++-.++.
T Consensus 3 ~ii~GfLGsGKTTli~~ll~ 22 (178)
T PF02492_consen 3 IIITGFLGSGKTTLINHLLK 22 (178)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 57999999999999888875
No 7
>KOG2743|consensus
Probab=34.79 E-value=18 Score=34.35 Aligned_cols=58 Identities=22% Similarity=0.306 Sum_probs=34.0
Q ss_pred hccchhhhhhcchhhHHHHHHhhhccccccchhhhhhhh----hchhhhHHHHHHH-HHhHhHhhhhh
Q psy12530 72 EKSWIRPCYLREGCTALLVAVVSRKMELTRAEKHVHNFM----MDTQLTKRLKNAA-ANVLRETWLIY 134 (189)
Q Consensus 72 ~~~~~~t~~~G~gcTAllVAVvaRKLELTraEKHVhnFM----mdtqLTKrvKnAA-AnVLRETWliy 134 (189)
-.--|||||+|+|-|+||=.|.. .+.-|++-..| -+..+-+-+-.+- .--+-|-|+-+
T Consensus 57 IPvtIITGyLGaGKtTLLn~Il~-----~~hgKRIAVIlNEfGes~die~sl~~~~~gg~lyEewv~L 119 (391)
T KOG2743|consen 57 IPVTIITGYLGAGKTTLLNYILT-----GQHGKRIAVILNEFGESSDIEKSLAVSQEGGELYEEWVEL 119 (391)
T ss_pred cceEEEEecccCChHHHHHHHHc-----cCCCceEEEEhhhcccchhhhHHHHhccccchHHHHHHHh
Confidence 44679999999999999866654 34455553333 3344444433322 22345777653
No 8
>PF12301 CD99L2: CD99 antigen like protein 2; InterPro: IPR022078 This family of proteins is found in eukaryotes. Proteins in this family are typically between 165 and 237 amino acids in length. CD99L2 and CD99 are involved in trans-endothelial migration of neutrophils in vitro and in the recruitment of neutrophils into inflamed peritoneum.
Probab=32.49 E-value=36 Score=28.66 Aligned_cols=32 Identities=19% Similarity=0.116 Sum_probs=16.2
Q ss_pred cchhhhhhcchhhHHHHHHhhhccccccchhhhhhh
Q psy12530 74 SWIRPCYLREGCTALLVAVVSRKMELTRAEKHVHNF 109 (189)
Q Consensus 74 ~~~~t~~~G~gcTAllVAVvaRKLELTraEKHVhnF 109 (189)
.-+|.||++ |++||||..=--..-=+|...||
T Consensus 114 ~g~IaGIvs----av~valvGAvsSyiaYqkKKlCF 145 (169)
T PF12301_consen 114 AGTIAGIVS----AVVVALVGAVSSYIAYQKKKLCF 145 (169)
T ss_pred cchhhhHHH----HHHHHHHHHHHHHHHHHhhccce
Confidence 345566654 55555555433344444555555
No 9
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=27.59 E-value=22 Score=27.17 Aligned_cols=31 Identities=19% Similarity=0.095 Sum_probs=21.0
Q ss_pred hhhhcchhhHHHHHHhhhccccccchhhhhhhhhch
Q psy12530 78 PCYLREGCTALLVAVVSRKMELTRAEKHVHNFMMDT 113 (189)
Q Consensus 78 t~~~G~gcTAllVAVvaRKLELTraEKHVhnFMmdt 113 (189)
..|+|.|.||+-+|.-+-+. -++|++|+.++
T Consensus 170 V~VVG~G~SA~d~a~~l~~~-----g~~V~~~~R~~ 200 (203)
T PF13738_consen 170 VVVVGGGNSAVDIAYALAKA-----GKSVTLVTRSP 200 (203)
T ss_dssp EEEE--SHHHHHHHHHHTTT-----CSEEEEEESS-
T ss_pred EEEEcChHHHHHHHHHHHhh-----CCEEEEEecCC
Confidence 56999999998887655444 27888887764
No 10
>PF09040 H-K_ATPase_N: Gastric H+/K+-ATPase, N terminal domain; InterPro: IPR015127 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the N-terminal domain found in gastric H+/K+-transporter ATPases. This domain adopts an alpha-helical conformation under hydrophobic conditions. The domain contains tyrosine residues, phosphorylation of which regulates the function of the ATPase. Additionally, the domain also interacts with various structural proteins, including the spectrin-binding domain of ankyrin III []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0008900 hydrogen:potassium-exchanging ATPase activity, 0015991 ATP hydrolysis coupled proton transport, 0016020 membrane; PDB: 1IWF_A 1IWC_A.
Probab=27.41 E-value=20 Score=24.47 Aligned_cols=9 Identities=89% Similarity=1.649 Sum_probs=0.4
Q ss_pred CCCCCcchh
Q psy12530 56 GGGGGGKRK 64 (189)
Q Consensus 56 ~~~~~~~~~ 64 (189)
-|||||+||
T Consensus 30 ~~~ggg~rk 38 (41)
T PF09040_consen 30 AGGGGGKRK 38 (41)
T ss_dssp -S-------
T ss_pred ccCCCCccc
Confidence 344455444
No 11
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=25.78 E-value=37 Score=23.35 Aligned_cols=18 Identities=22% Similarity=0.215 Sum_probs=14.5
Q ss_pred hhcchhhHHHHHHhhhcc
Q psy12530 80 YLREGCTALLVAVVSRKM 97 (189)
Q Consensus 80 ~~G~gcTAllVAVvaRKL 97 (189)
|+|+|++.|..|..+++-
T Consensus 1 IiGaG~sGl~aA~~L~~~ 18 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKA 18 (68)
T ss_dssp EES-SHHHHHHHHHHHHT
T ss_pred CEeeCHHHHHHHHHHHHC
Confidence 689999999999888763
No 12
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=25.78 E-value=34 Score=30.95 Aligned_cols=23 Identities=22% Similarity=0.294 Sum_probs=19.5
Q ss_pred chhhhhhcchhhHHHHHHhhhcc
Q psy12530 75 WIRPCYLREGCTALLVAVVSRKM 97 (189)
Q Consensus 75 ~~~t~~~G~gcTAllVAVvaRKL 97 (189)
-|+|||+|+|=|++|--+...+-
T Consensus 4 tvitGFLGsGKTTlL~~lL~~~~ 26 (323)
T COG0523 4 TVITGFLGSGKTTLLNHLLANRD 26 (323)
T ss_pred EEEeecCCCCHHHHHHHHHhccC
Confidence 47899999999999988777665
No 13
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=23.92 E-value=29 Score=31.12 Aligned_cols=22 Identities=23% Similarity=0.271 Sum_probs=18.3
Q ss_pred ccchhhhhhcchhhHHHHHHhh
Q psy12530 73 KSWIRPCYLREGCTALLVAVVS 94 (189)
Q Consensus 73 ~~~~~t~~~G~gcTAllVAVva 94 (189)
.--|+|||+|+|=|+++=.++.
T Consensus 5 pv~iltGFLGaGKTTll~~ll~ 26 (341)
T TIGR02475 5 PVTIVTGFLGAGKTTLIRHLLQ 26 (341)
T ss_pred CEEEEEECCCCCHHHHHHHHHh
Confidence 3468999999999998877764
No 14
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=21.10 E-value=36 Score=30.32 Aligned_cols=22 Identities=23% Similarity=0.302 Sum_probs=18.4
Q ss_pred ccchhhhhhcchhhHHHHHHhh
Q psy12530 73 KSWIRPCYLREGCTALLVAVVS 94 (189)
Q Consensus 73 ~~~~~t~~~G~gcTAllVAVva 94 (189)
.-.++|||.|+|=|+++=-++.
T Consensus 5 pv~iltGFLGaGKTTll~~ll~ 26 (318)
T PRK11537 5 AVTLLTGFLGAGKTTLLRHILN 26 (318)
T ss_pred CEEEEEECCCCCHHHHHHHHHh
Confidence 4578999999999999877764
No 15
>KOG1419|consensus
Probab=20.87 E-value=23 Score=35.66 Aligned_cols=22 Identities=27% Similarity=0.540 Sum_probs=18.8
Q ss_pred hhhHHHHHHHHHhHhHhhhhhh
Q psy12530 114 QLTKRLKNAAANVLRETWLIYK 135 (189)
Q Consensus 114 qLTKrvKnAAAnVLRETWliyK 135 (189)
++..+..+.||+.+|-.|++|-
T Consensus 333 KHf~rrr~pAA~LIQc~WR~ya 354 (654)
T KOG1419|consen 333 KHFNRRRNPAASLIQCAWRYYA 354 (654)
T ss_pred HHHHhhcchHHHHHHHHHHHHh
Confidence 3567888999999999999984
No 16
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=20.53 E-value=57 Score=25.65 Aligned_cols=29 Identities=17% Similarity=-0.024 Sum_probs=27.2
Q ss_pred chhhhhhcchhhHHHHHHhhhccccccch
Q psy12530 75 WIRPCYLREGCTALLVAVVSRKMELTRAE 103 (189)
Q Consensus 75 ~~~t~~~G~gcTAllVAVvaRKLELTraE 103 (189)
++..|+++++++.+++..+.+++.++.|-
T Consensus 50 ~i~lgl~~~~la~~~w~~aL~~~~ls~Ay 78 (129)
T PRK02971 50 AVLLGLAGYALSMLCWLKALRYLPLSRAY 78 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 89999999999999999999999999875
Done!