Query psy12530
Match_columns 189
No_of_seqs 63 out of 65
Neff 2.7
Searched_HMMs 29240
Date Fri Aug 16 21:41:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12530.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12530hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1g4y_B Calcium-activated potas 100.0 4.6E-34 1.6E-38 219.0 3.3 68 93-189 1-68 (101)
2 3sjq_C Small conductance calci 99.8 1.1E-20 3.7E-25 141.8 3.3 50 111-189 1-50 (87)
3 1g4y_B Calcium-activated potas 98.1 1.2E-06 4.2E-11 67.3 2.4 28 136-163 15-42 (101)
4 3sjq_C Small conductance calci 97.6 1.9E-05 6.6E-10 59.3 2.4 23 140-162 1-23 (87)
5 3p8c_D Wiskott-aldrich syndrom 44.6 6.3 0.00022 34.3 0.8 36 19-59 155-190 (279)
6 3eff_K Voltage-gated potassium 32.7 39 0.0013 24.7 3.4 25 74-98 70-94 (139)
7 3vmt_A Monofunctional glycosyl 28.5 49 0.0017 28.4 3.8 74 61-137 25-102 (263)
8 3kkj_A Amine oxidase, flavin-c 28.0 20 0.00067 24.5 1.0 18 79-96 6-23 (336)
9 2i7u_A Four-alpha-helix bundle 27.4 17 0.0006 25.3 0.7 8 54-61 27-34 (62)
10 1b6a_A Methionine aminopeptida 23.8 17 0.00057 33.3 0.0 18 53-70 89-106 (478)
11 1id3_C Histone H2A.1; nucleoso 22.1 50 0.0017 25.4 2.4 61 103-165 28-100 (131)
12 1cn3_F Fragment of coat protei 20.9 27 0.00093 21.3 0.5 12 71-82 15-26 (29)
No 1
>1g4y_B Calcium-activated potassium channel RSK2; small-conductance calcium-activated potassium channel, channel gating, signalin; 1.60A {Rattus norvegicus} SCOP: f.15.1.1 PDB: 1kkd_A 1qx7_D
Probab=99.98 E-value=4.6e-34 Score=219.03 Aligned_cols=68 Identities=76% Similarity=1.130 Sum_probs=44.9
Q ss_pred hhhccccccchhhhhhhhhchhhhHHHHHHHHHhHhHhhhhhhhhhhhhhhchhhhhHHHHHHHHHHHHHhhhhhhhhcc
Q psy12530 93 VSRKMELTRAEKHVHNFMMDTQLTKRLKNAAANVLRETWLIYKHTRLVKRVNAGRLKNAAANVLRETWLIYKHTRLVKRV 172 (189)
Q Consensus 93 vaRKLELTraEKHVhnFMmdtqLTKrvKnAAAnVLRETWliyKhTRlvD~v~tRR~k~aAa~vLrEaw~~yKHtRL~~r~ 172 (189)
|+||||||+|||||||||||+|||||+||||||||||||+||||| +|++++
T Consensus 1 vaRKLeLtkaEKhVhnFMmD~qltk~~K~aAAnVLrEtWliyK~t-----------------------------kl~~k~ 51 (101)
T 1g4y_B 1 MGRKLELTKAEKHVHNFMMDTQLTKRVKNAAANVLRETWLIYKNT-----------------------------KLVKKI 51 (101)
T ss_dssp -------------------CHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------HSCSSC
T ss_pred CchHHHhhHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHH-----------------------------hhcccc
Confidence 689999999999999999999999999999999999999887665 666789
Q ss_pred CcchhhhhhhhhhhhhC
Q psy12530 173 NAGRVRTHQRKFLLAIY 189 (189)
Q Consensus 173 n~~~~R~HQRk~L~AI~ 189 (189)
|++++|+|||+||+|||
T Consensus 52 d~~r~R~HQRkfL~AI~ 68 (101)
T 1g4y_B 52 DHAKVRKHQRKFLQAIH 68 (101)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHH
Confidence 99999999999999996
No 2
>3sjq_C Small conductance calcium-activated potassium CHA protein 2; protein-protein complex, EF hand, calmodulin, calcium bindin binding protein; HET: PHU; 1.90A {Rattus norvegicus}
Probab=99.80 E-value=1.1e-20 Score=141.83 Aligned_cols=50 Identities=76% Similarity=1.103 Sum_probs=43.6
Q ss_pred hchhhhHHHHHHHHHhHhHhhhhhhhhhhhhhhchhhhhHHHHHHHHHHHHHhhhhhhhhccCcchhhhhhhhhhhhhC
Q psy12530 111 MDTQLTKRLKNAAANVLRETWLIYKHTRLVKRVNAGRLKNAAANVLRETWLIYKHTRLVKRVNAGRVRTHQRKFLLAIY 189 (189)
Q Consensus 111 mdtqLTKrvKnAAAnVLRETWliyKhTRlvD~v~tRR~k~aAa~vLrEaw~~yKHtRL~~r~n~~~~R~HQRk~L~AI~ 189 (189)
||||+|||+|+||||||||||+|||| ++|++++|++++|+|||+||+|||
T Consensus 1 mDtqltKrvK~AAAnVLrEtWliyK~-----------------------------t~L~~k~~~~r~R~HQRk~L~AI~ 50 (87)
T 3sjq_C 1 MDTQLTKRVKNAAANVLRETWLIYKN-----------------------------TKLVKKIDHAKVRKHQRKFLQAIH 50 (87)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHH-----------------------------HHSCSSCCHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHhHHHHHHHHh-----------------------------hhcccCCcHHHHHHHhHHHHHHHH
Confidence 79999999999999999999888765 577789999999999999999996
No 3
>1g4y_B Calcium-activated potassium channel RSK2; small-conductance calcium-activated potassium channel, channel gating, signalin; 1.60A {Rattus norvegicus} SCOP: f.15.1.1 PDB: 1kkd_A 1qx7_D
Probab=98.08 E-value=1.2e-06 Score=67.31 Aligned_cols=28 Identities=61% Similarity=0.901 Sum_probs=22.6
Q ss_pred hhhhhhhhchhhhhHHHHHHHHHHHHHh
Q psy12530 136 HTRLVKRVNAGRLKNAAANVLRETWLIY 163 (189)
Q Consensus 136 hTRlvD~v~tRR~k~aAa~vLrEaw~~y 163 (189)
|-||||+..++|++++|||||||+|+||
T Consensus 15 hnFMmD~qltk~~K~aAAnVLrEtWliy 42 (101)
T 1g4y_B 15 HNFMMDTQLTKRVKNAAANVLRETWLIY 42 (101)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHhHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999999999987
No 4
>3sjq_C Small conductance calcium-activated potassium CHA protein 2; protein-protein complex, EF hand, calmodulin, calcium bindin binding protein; HET: PHU; 1.90A {Rattus norvegicus}
Probab=97.64 E-value=1.9e-05 Score=59.27 Aligned_cols=23 Identities=65% Similarity=0.895 Sum_probs=19.6
Q ss_pred hhhhchhhhhHHHHHHHHHHHHH
Q psy12530 140 VKRVNAGRLKNAAANVLRETWLI 162 (189)
Q Consensus 140 vD~v~tRR~k~aAa~vLrEaw~~ 162 (189)
||+..++|++++|+|||||+|+|
T Consensus 1 mDtqltKrvK~AAAnVLrEtWli 23 (87)
T 3sjq_C 1 MDTQLTKRVKNAAANVLRETWLI 23 (87)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHhHHHHHH
Confidence 68889999999999999999954
No 5
>3p8c_D Wiskott-aldrich syndrome protein family member 1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=44.55 E-value=6.3 Score=34.29 Aligned_cols=36 Identities=22% Similarity=0.587 Sum_probs=19.6
Q ss_pred eehhhhhHHHHHhhhheeeeehhhhhhhhccccccccCCCC
Q psy12530 19 TFHFHISTALILKQCHLVLIQKENKRRRKEGEEDKEEGGGG 59 (189)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 59 (189)
+|-|...-.-+|+.+- .--+++||..++.+++||||
T Consensus 155 SfFfdlWkeeml~d~k-----~~~k~krk~~~~~~~~~~~~ 190 (279)
T 3p8c_D 155 SYFFDLWKEKMLQDTE-----DKRKEKRKQKQKNLDRGGSG 190 (279)
T ss_dssp THHHHHHHHHHHHHHH-----HHHHHHHHHHHTTCC-----
T ss_pred HHHHHHHHHHHHHHHH-----HHHHHHhhcccccccCCCCC
Confidence 3667777777777764 22344555557777777766
No 6
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=32.66 E-value=39 Score=24.65 Aligned_cols=25 Identities=8% Similarity=-0.100 Sum_probs=20.8
Q ss_pred cchhhhhhcchhhHHHHHHhhhccc
Q psy12530 74 SWIRPCYLREGCTALLVAVVSRKME 98 (189)
Q Consensus 74 ~~~~t~~~G~gcTAllVAVvaRKLE 98 (189)
-.++..++|.+..++++++++..+.
T Consensus 70 ~~~~~~~~G~~~~~~~~~~i~~~~~ 94 (139)
T 3eff_K 70 VAVVVMVAGITSFGLVTAALATWFV 94 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566778899999999999998873
No 7
>3vmt_A Monofunctional glycosyltransferase; transmembrane, bacterial cell WALL SYNT membrane; HET: LHI; 2.30A {Staphylococcus aureus} PDB: 3vmr_A* 3vms_A 3vmq_A*
Probab=28.47 E-value=49 Score=28.44 Aligned_cols=74 Identities=22% Similarity=0.201 Sum_probs=33.2
Q ss_pred cchhhhhhhhhhccchhhhhhcchhhHHHHHHh-hhccccccch--hhhhhhhhchhhhHHHHHHHHHhHh-Hhhhhhhh
Q psy12530 61 GKRKKKKKKKKEKSWIRPCYLREGCTALLVAVV-SRKMELTRAE--KHVHNFMMDTQLTKRLKNAAANVLR-ETWLIYKH 136 (189)
Q Consensus 61 ~~~~~~~~~~~~~~~~~t~~~G~gcTAllVAVv-aRKLELTraE--KHVhnFMmdtqLTKrvKnAAAnVLR-ETWliyKh 136 (189)
|+-.||||.++--.|++..+++..+....+.++ +-....+.-+ ..-..|.--.+++..+++| |+- |--.||.|
T Consensus 25 ~~~~kk~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~r~~v~l~~Ip~~l~~A---vIA~ED~rFy~H 101 (263)
T 3vmt_A 25 GKPPKKKKSKRILLKILLTILIIIALFIGIMYFLSTRDNVDELRKIENKSSFVSADNMPEYVKGA---FISMEDERFYNH 101 (263)
T ss_dssp ----------CCTTHHHHHHHHHHHHHHHHHHHHHSCSCGGGGGGGGGSTTCCCGGGSCHHHHHH---HHHHHCTTTTTS
T ss_pred CCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCchhhhhhhhccCCCCCHHHcCHHHHHH---HHHHHcchhhhC
Confidence 444455555566666666665544332222222 1111111110 1224567777889999997 443 77777777
Q ss_pred h
Q psy12530 137 T 137 (189)
Q Consensus 137 T 137 (189)
.
T Consensus 102 ~ 102 (263)
T 3vmt_A 102 H 102 (263)
T ss_dssp S
T ss_pred C
Confidence 4
No 8
>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}
Probab=28.01 E-value=20 Score=24.49 Aligned_cols=18 Identities=17% Similarity=0.158 Sum_probs=15.8
Q ss_pred hhhcchhhHHHHHHhhhc
Q psy12530 79 CYLREGCTALLVAVVSRK 96 (189)
Q Consensus 79 ~~~G~gcTAllVAVvaRK 96 (189)
.|+|+|++-|..|..+.+
T Consensus 6 ~IIGaGpaGL~aA~~La~ 23 (336)
T 3kkj_A 6 AIIGTGIAGLSAAQALTA 23 (336)
T ss_dssp EEECCSHHHHHHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHH
Confidence 689999999999988766
No 9
>2i7u_A Four-alpha-helix bundle; HOMO dimer, anesthetic binding, de novo protein/ligand binding protein complex; NMR {Synthetic} PDB: 2jst_A
Probab=27.42 E-value=17 Score=25.32 Aligned_cols=8 Identities=88% Similarity=1.763 Sum_probs=3.3
Q ss_pred ccCCCCCc
Q psy12530 54 EEGGGGGG 61 (189)
Q Consensus 54 ~~~~~~~~ 61 (189)
|.||||||
T Consensus 27 eggggggg 34 (62)
T 2i7u_A 27 EGGGGGGG 34 (62)
T ss_dssp HCSSCSSS
T ss_pred hcCCCCch
Confidence 33444444
No 10
>1b6a_A Methionine aminopeptidase; angiogenesis inhibitor; HET: TN4; 1.60A {Homo sapiens} SCOP: a.4.5.25 d.127.1.1 PDB: 1qzy_A* 1boa_A* 1kq0_A 1kq9_A 1bn5_A* 1b59_A* 1yw9_A* 1r5g_A* 1r5h_A* 1r58_A* 1yw8_A* 1yw7_A* 2adu_A* 2ea2_A* 2ea4_A* 2ga2_A* 2oaz_A*
Probab=23.79 E-value=17 Score=33.29 Aligned_cols=18 Identities=61% Similarity=0.925 Sum_probs=0.0
Q ss_pred cccCCCCCcchhhhhhhh
Q psy12530 53 KEEGGGGGGKRKKKKKKK 70 (189)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~ 70 (189)
.+++++.++|+||+||||
T Consensus 89 ~~~~~~~~~~~~~~~~~~ 106 (478)
T 1b6a_A 89 DGDGDGATGKKKKKKKKK 106 (478)
T ss_dssp ------------------
T ss_pred Cccccccccccccccccc
Confidence 666667776666666544
No 11
>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=22.11 E-value=50 Score=25.41 Aligned_cols=61 Identities=18% Similarity=0.097 Sum_probs=32.9
Q ss_pred hhhhhhhhhchhhhHH------------HHHHHHHhHhHhhhhhhhhhhhhhhchhhhhHHHHHHHHHHHHHhhh
Q psy12530 103 EKHVHNFMMDTQLTKR------------LKNAAANVLRETWLIYKHTRLVKRVNAGRLKNAAANVLRETWLIYKH 165 (189)
Q Consensus 103 EKHVhnFMmdtqLTKr------------vKnAAAnVLRETWliyKhTRlvD~v~tRR~k~aAa~vLrEaw~~yKH 165 (189)
=-+||.+|.+.....| +..-++.||..+|-.-++.. ...-+-++...|++-=.|.|.+++.
T Consensus 28 V~rI~R~Lk~~~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k--~krItp~hI~lAI~nDeEL~~Ll~~ 100 (131)
T 1id3_C 28 VGRVHRLLRRGNYAQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNK--KTRIIPRHLQLAIRNDDELNKLLGN 100 (131)
T ss_dssp HHHHHHHHHTTCSCSEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTT--CSEECHHHHHHHHHTCHHHHHHTTT
T ss_pred HHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcC--CceEcHHHHHHHHhccHHHHHHhcC
Confidence 3456666666544444 44445566666654433321 2223455566666666688876654
No 12
>1cn3_F Fragment of coat protein VP2; viral coat protein VP1, viral coat protein VP2, viral entry, viral protein; 2.20A {Polyomavirus}
Probab=20.85 E-value=27 Score=21.29 Aligned_cols=12 Identities=25% Similarity=0.584 Sum_probs=9.2
Q ss_pred hhccchhhhhhc
Q psy12530 71 KEKSWIRPCYLR 82 (189)
Q Consensus 71 ~~~~~~~t~~~G 82 (189)
-...||++-|+|
T Consensus 15 vtpdwmlplilg 26 (29)
T 1cn3_F 15 VTPDWMLPLILG 26 (29)
T ss_dssp CEEGGGHHHHHH
T ss_pred cCchhhHHHHHh
Confidence 346799998877
Done!