RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12530
(189 letters)
>1g4y_B Calcium-activated potassium channel RSK2; small-conductance
calcium-activated potassium channel, channel gating,
signalin; 1.60A {Rattus norvegicus} SCOP: f.15.1.1 PDB:
1kkd_A 1qx7_D
Length = 101
Score = 72.9 bits (178), Expect = 2e-17
Identities = 52/97 (53%), Positives = 63/97 (64%), Gaps = 29/97 (29%)
Query: 93 VSRKMELTRAEKHVHNFMMDTQLTKRLKNAAANVLRETWLIYKHTRLVKRVNAGRLKNAA 152
+ RK+ELT+AEKHVHNFMMDTQLTK R+KNAA
Sbjct: 1 MGRKLELTKAEKHVHNFMMDTQLTK-----------------------------RVKNAA 31
Query: 153 ANVLRETWLIYKHTRLVKRVNAGRVRTHQRKFLLAIY 189
ANVLRETWLIYK+T+LVK+++ +VR HQRKFL AI+
Sbjct: 32 ANVLRETWLIYKNTKLVKKIDHAKVRKHQRKFLQAIH 68
>3sjq_C Small conductance calcium-activated potassium CHA protein 2;
protein-protein complex, EF hand, calmodulin, calcium
bindin binding protein; HET: PHU; 1.90A {Rattus
norvegicus}
Length = 87
Score = 67.7 bits (165), Expect = 1e-15
Identities = 31/43 (72%), Positives = 39/43 (90%)
Query: 147 RLKNAAANVLRETWLIYKHTRLVKRVNAGRVRTHQRKFLLAIY 189
R+KNAAANVLRETWLIYK+T+LVK+++ +VR HQRKFL AI+
Sbjct: 8 RVKNAAANVLRETWLIYKNTKLVKKIDHAKVRKHQRKFLQAIH 50
Score = 24.6 bits (53), Expect = 9.5
Identities = 5/30 (16%), Positives = 15/30 (50%)
Query: 93 VSRKMELTRAEKHVHNFMMDTQLTKRLKNA 122
+ +K++ + KH F+ ++L++
Sbjct: 29 LVKKIDHAKVRKHQRKFLQAIHQARKLRSV 58
>1b6a_A Methionine aminopeptidase; angiogenesis inhibitor; HET: TN4; 1.60A
{Homo sapiens} SCOP: a.4.5.25 d.127.1.1 PDB: 1qzy_A*
1boa_A* 1kq0_A 1kq9_A 1bn5_A* 1b59_A* 1yw9_A* 1r5g_A*
1r5h_A* 1r58_A* 1yw8_A* 1yw7_A* 2adu_A* 2ea2_A* 2ea4_A*
2ga2_A* 2oaz_A*
Length = 478
Score = 33.0 bits (75), Expect = 0.052
Identities = 15/27 (55%), Positives = 18/27 (66%)
Query: 47 KEGEEDKEEGGGGGGKRKKKKKKKKEK 73
KE +ED E+G G G KKKKKK+K
Sbjct: 79 KERDEDDEDGDGDGDGATGKKKKKKKK 105
Score = 31.4 bits (71), Expect = 0.15
Identities = 15/36 (41%), Positives = 22/36 (61%)
Query: 39 QKENKRRRKEGEEDKEEGGGGGGKRKKKKKKKKEKS 74
E+K R ++ E+ +G G GK+KKKKKKK+
Sbjct: 75 ALEDKERDEDDEDGDGDGDGATGKKKKKKKKKRGPK 110
Score = 31.0 bits (70), Expect = 0.21
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 39 QKENKRRRKEGEEDKEEGGGGGGKRKKKKKKKKEK 73
Q E + ++ +E G G G KKKKK+K
Sbjct: 70 QLERSALEDKERDEDDEDGDGDGDGATGKKKKKKK 104
Score = 30.3 bits (68), Expect = 0.35
Identities = 9/37 (24%), Positives = 18/37 (48%)
Query: 39 QKENKRRRKEGEEDKEEGGGGGGKRKKKKKKKKEKSW 75
++ + ++ E D+++ G G KKKK+K
Sbjct: 69 RQLERSALEDKERDEDDEDGDGDGDGATGKKKKKKKK 105
Score = 28.3 bits (63), Expect = 1.4
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 39 QKENKRRRKEGEEDKEEGGGGGGKRKKKKKKKKEK 73
+ R E +ED + G G +KKKKKKKK
Sbjct: 74 SALEDKERDEDDEDGDGDGDGATGKKKKKKKKKRG 108
Score = 26.0 bits (57), Expect = 9.7
Identities = 9/36 (25%), Positives = 14/36 (38%)
Query: 39 QKENKRRRKEGEEDKEEGGGGGGKRKKKKKKKKEKS 74
N + E+ +KK++KKKK K
Sbjct: 12 SHLNGDLDPDDREEGAASTAEEAAKKKRRKKKKSKG 47
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.2 bits (70), Expect = 0.25
Identities = 18/91 (19%), Positives = 30/91 (32%), Gaps = 24/91 (26%)
Query: 106 VHNFM------MDTQLTKR---LKN--AAANVLRETWLIYKHTRLVKRVNAGRLKNAAA- 153
+H DT L K +KN A + + + ++ L + V G + A
Sbjct: 101 IHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIF 160
Query: 154 ----NV------LRETWLIYKH--TRLVKRV 172
N LR+ + Y L+K
Sbjct: 161 GGQGNTDDYFEELRDLYQTYHVLVGDLIKFS 191
Score = 29.6 bits (66), Expect = 0.74
Identities = 20/127 (15%), Positives = 32/127 (25%), Gaps = 47/127 (37%)
Query: 64 KKKKKKKKEKSWIRPCYLREGCTALLVAVVSRKMELTRAEKHVHNFMMDTQLTKRLKNAA 123
+ K K I+ Y+ A ++A R N + L + +
Sbjct: 111 ENDTTLVKTKELIK-NYIT----ARIMA--------KRPFDKKSN----SALFRAVGEGN 153
Query: 124 ANV----------------LRETWLIYKH--TRLVKRVNAGRLKNAAANVLR-------- 157
A + LR+ + Y L+K A L L
Sbjct: 154 AQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFS-AETLSELIRTTLDAEKVFTQG 212
Query: 158 ---ETWL 161
WL
Sbjct: 213 LNILEWL 219
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.9 bits (66), Expect = 0.32
Identities = 8/31 (25%), Positives = 16/31 (51%), Gaps = 3/31 (9%)
Query: 64 KKKKKKKKEKSWIRPCYLREGCTALLV-AVV 93
+K+ KK + S ++ Y + AL + A +
Sbjct: 18 EKQALKKLQAS-LKL-YADDSAPALAIKATM 46
>2zjr_S 50S ribosomal protein L25; ribosome, large ribosomal subunit,
ribonucleoprotein, RNA-binding, rRNA-binding,
tRNA-binding, methylation; 2.91A {Deinococcus
radiodurans} SCOP: b.53.1.1 PDB: 1njm_T* 1nwx_T* 1njp_T*
1xbp_T* 2zjp_S* 2zjq_S 1nwy_T 3cf5_S* 3dll_S* 3pio_S*
3pip_S* 1nkw_T 1sm1_T* 1yl3_V 2b66_Z 2b9n_Z 2b9p_Z
1pnu_T 1pny_T 1vor_W ...
Length = 237
Score = 28.9 bits (65), Expect = 0.91
Identities = 5/35 (14%), Positives = 9/35 (25%)
Query: 39 QKENKRRRKEGEEDKEEGGGGGGKRKKKKKKKKEK 73
+E EG+ EE + +
Sbjct: 200 SEEAAEAVLEGDASLEEVKAEASEDNAGTDSEDNS 234
Score = 27.0 bits (60), Expect = 3.1
Identities = 4/26 (15%), Positives = 6/26 (23%)
Query: 47 KEGEEDKEEGGGGGGKRKKKKKKKKE 72
EE K E + +
Sbjct: 212 ASLEEVKAEASEDNAGTDSEDNSDAQ 237
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 27.5 bits (60), Expect = 3.8
Identities = 26/164 (15%), Positives = 51/164 (31%), Gaps = 40/164 (24%)
Query: 29 ILKQCHLVLIQKENKRRRKEGEEDKEE-----GGGGGGK--------RKKKKKKKKEKS- 74
+ + ++ +Q K R+ E + G G GK K + K +
Sbjct: 125 VFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKI 184
Query: 75 -WI--RPCYLREGCTALLVAVVSRKMELTRAEKHVHNFMMDTQLTKRLKNAAANVLRETW 131
W+ + C E +L ++ + +D T R +++ LR
Sbjct: 185 FWLNLKNCNSPETVLEMLQKLLYQ---------------IDPNWTSRSDHSSNIKLRIHS 229
Query: 132 LIYKHTRLVKRVNAGRLKNAAANVLRETWLIYKHTRLVKRVNAG 175
+ + RL+K +N VL + + N
Sbjct: 230 IQAELRRLLKS---KPYENCLL-VLLNVQ----NAKAWNAFNLS 265
>3pe5_A Uncharacterized protein; structural genomics, PSI-biology,
protein structure initiati northeast structural
genomics consortium, NESG; 2.38A {Clostridium leptum}
Length = 403
Score = 27.2 bits (60), Expect = 4.1
Identities = 7/35 (20%), Positives = 13/35 (37%)
Query: 42 NKRRRKEGEEDKEEGGGGGGKRKKKKKKKKEKSWI 76
+ RR +E + G K+ +K + I
Sbjct: 3 SNRRYQEPQNRDISSRSNGKNPFKRSTGRKVSNVI 37
>4epi_A Pesticin, lysozyme chimera; bacterial toxin, toxin, hydrolase;
1.74A {Yersinia pestis} PDB: 4exm_A 4arj_A
Length = 330
Score = 26.4 bits (57), Expect = 5.8
Identities = 10/47 (21%), Positives = 17/47 (36%), Gaps = 7/47 (14%)
Query: 135 KHTRLVKRVNAGRLKNAAANVLRETWLIYKHT-----RLVKRVNAGR 176
T ++ + R AA N+ + W Y T R++ G
Sbjct: 279 GFTNSLRMLQQKRWDEAAVNLAKSRW--YNQTPNRAKRVITTFRTGT 323
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.133 0.392
Gapped
Lambda K H
0.267 0.0459 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,812,648
Number of extensions: 158142
Number of successful extensions: 511
Number of sequences better than 10.0: 1
Number of HSP's gapped: 483
Number of HSP's successfully gapped: 48
Length of query: 189
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 101
Effective length of database: 4,244,745
Effective search space: 428719245
Effective search space used: 428719245
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (25.2 bits)