RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12530
         (189 letters)



>d1g4yb_ f.15.1.1 (B:) Small-conductance potassium channel {Rat
           (Rattus norvegicus) [TaxId: 10116]}
          Length = 82

 Score = 69.1 bits (169), Expect = 1e-16
 Identities = 31/43 (72%), Positives = 39/43 (90%)

Query: 147 RLKNAAANVLRETWLIYKHTRLVKRVNAGRVRTHQRKFLLAIY 189
           R+KNAAANVLRETWLIYK+T+LVK+++  +VR HQRKFL AI+
Sbjct: 7   RVKNAAANVLRETWLIYKNTKLVKKIDHAKVRKHQRKFLQAIH 49


>d1lyva_ c.45.1.2 (A:) Protein-tyrosine phosphatase YopH, catalytic
           domain {Yersinia enterocolitica [TaxId: 630]}
          Length = 283

 Score = 25.1 bits (54), Expect = 5.4
 Identities = 11/81 (13%), Positives = 25/81 (30%), Gaps = 10/81 (12%)

Query: 107 HNFMMDTQLTKRLKNAAANVLRETWLIYKHTRLVKRVNAGRLKNAAANVLRETWLIYKHT 166
           +      +L+ RL       LR T     +     +   G   N   ++        + T
Sbjct: 4   YGPEARAELSSRLTT-----LRNTLAPATNDPRYLQACGGEKLNRFRDIQ-----CRRQT 53

Query: 167 RLVKRVNAGRVRTHQRKFLLA 187
            +   +NA  ++    + +  
Sbjct: 54  AVRADLNANYIQVGNTRTIAC 74


>d5easa2 a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase {Tobacco
           (Nicotiana tabacum) [TaxId: 4097]}
          Length = 328

 Score = 24.9 bits (54), Expect = 7.5
 Identities = 14/81 (17%), Positives = 28/81 (34%), Gaps = 1/81 (1%)

Query: 79  CYLREGCTALLVAVVSRKMELTRAEKHVH-NFMMDTQLTKRLKNAAANVLRETWLIYKHT 137
           C +R+   +   A+   +     A K ++   +  T ++        N+ R   + Y H 
Sbjct: 244 CCMRDYGISTKEAMAKFQNMAETAWKDINEGLLRPTPVSTEFLTPILNLARIVEVTYIHN 303

Query: 138 RLVKRVNAGRLKNAAANVLRE 158
                     LK    N+L +
Sbjct: 304 LDGYTHPEKVLKPHIINLLVD 324


>d1k28a3 d.2.1.3 (A:130-345) Tail-associated lysozyme gp5, catalytic
           domain {Bacteriophage T4 [TaxId: 10665]}
          Length = 216

 Score = 24.6 bits (53), Expect = 8.4
 Identities = 20/148 (13%), Positives = 40/148 (27%), Gaps = 21/148 (14%)

Query: 34  HLVLIQKENKRRRKEGEEDKEEGGGGGGKRKKKKKKKKEKSWIRPCYLREGCTALLVAVV 93
           HL++ Q      +      K+ G    G       ++    + R     +        V 
Sbjct: 75  HLIMKQPVRDMAQINKVLSKQVGREITGNPGSITMEEATTLFERDLADMQRDIKSHSKVG 134

Query: 94  SRKMELTRAEKHVHNFMMDTQLTKRLKNAAANVLRETWLIYKHTRLVKRVNAGRLKNAAA 153
                + R+ +               +N A  +        K   ++  + AG  + A  
Sbjct: 135 PVWQAVNRSRQMAL------------ENMAFQMGVGGVA--KFNTMLTAMLAGDWEKAYK 180

Query: 154 NVLRETWLIYKHT-----RLVKRVNAGR 176
                 W  Y+ T     R+   +  G 
Sbjct: 181 AGRDSLW--YQQTKGRASRVTMIILTGN 206


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.133    0.392 

Gapped
Lambda     K      H
   0.267   0.0599    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 675,595
Number of extensions: 29726
Number of successful extensions: 106
Number of sequences better than 10.0: 1
Number of HSP's gapped: 99
Number of HSP's successfully gapped: 13
Length of query: 189
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 109
Effective length of database: 1,309,196
Effective search space: 142702364
Effective search space used: 142702364
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.3 bits)