RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy12531
(183 letters)
>gnl|CDD|215833 pfam00274, Glycolytic, Fructose-bisphosphate aldolase class-I.
Length = 348
Score = 213 bits (544), Expect = 4e-69
Identities = 80/112 (71%), Positives = 94/112 (83%), Gaps = 1/112 (0%)
Query: 15 ELKKIAEAIVAPGKGILAADESVSTMGKRLQDIGCENTEEHRRLYRQLLFTSDKVIGDNI 74
EL K A+AIVAPGKGILAADES T+GKRL IG ENTEE+RR YR+LLFT+ +G+ I
Sbjct: 1 ELIKTAKAIVAPGKGILAADESTGTIGKRLASIGVENTEENRRAYRELLFTTPG-LGEYI 59
Query: 75 SGVILFHETLYQKADDGTPFVELLKQRGIIPGIKVDKGVVPLMGSEDECTTQ 126
SGVILF ETLYQK DDG PFV+LLK++GI+PGIKVDKG+VPL G++ E TTQ
Sbjct: 60 SGVILFEETLYQKTDDGKPFVDLLKEKGIVPGIKVDKGLVPLAGTDGETTTQ 111
Score = 122 bits (309), Expect = 5e-34
Identities = 46/73 (63%), Positives = 56/73 (76%), Gaps = 2/73 (2%)
Query: 113 VVPLMGSEDECTTQ--AQATVQALQRTVPAAVPGITFLSGGQSEEEASVNLDAINKYSGK 170
V P + T + A+ATV+AL+RTVP AVPGI FLSGGQSEEEA+ NL+A+N+ K
Sbjct: 219 VTPGADCPKKATPEDVAEATVRALRRTVPPAVPGIVFLSGGQSEEEATANLNAMNQLPLK 278
Query: 171 KPWALTFSYGRAL 183
KPWAL+FSYGRAL
Sbjct: 279 KPWALSFSYGRAL 291
>gnl|CDD|188635 cd00948, FBP_aldolase_I_a, Fructose-1,6-bisphosphate aldolase.
Fructose-1,6-bisphosphate aldolase. The enzyme catalyzes
the cleavage of fructose 1,6-bisphosphate to
glyceraldehyde 3-phosphate and dihydroxyacetone
phosphate (DHAP). This family includes proteins found in
vertebrates, plants, and bacterial plant pathogens.
Mutations in the aldolase genes in humans cause
hemolytic anemia and hereditary fructose intolerance.
The enzyme is a member of the class I aldolase family,
which utilizes covalent catalysis through a Schiff base
formed between a lysine residue of the enzyme and ketose
substrates.
Length = 330
Score = 202 bits (517), Expect = 2e-65
Identities = 79/113 (69%), Positives = 93/113 (82%), Gaps = 1/113 (0%)
Query: 14 EELKKIAEAIVAPGKGILAADESVSTMGKRLQDIGCENTEEHRRLYRQLLFTSDKVIGDN 73
EEL K A+AIVAPGKGILAADES T+GKR IG ENTEE+RR YR+LLFT+ +G
Sbjct: 2 EELIKTAKAIVAPGKGILAADESTGTIGKRFASIGVENTEENRRAYRELLFTTPG-LGQY 60
Query: 74 ISGVILFHETLYQKADDGTPFVELLKQRGIIPGIKVDKGVVPLMGSEDECTTQ 126
ISGVILF ETLYQK DDG PFV++LK++GI+PGIKVDKG+VPL G++ E TTQ
Sbjct: 61 ISGVILFEETLYQKTDDGKPFVDILKEKGIVPGIKVDKGLVPLAGTDGETTTQ 113
Score = 119 bits (300), Expect = 7e-33
Identities = 45/73 (61%), Positives = 57/73 (78%), Gaps = 2/73 (2%)
Query: 113 VVPLMGSEDECTTQ--AQATVQALQRTVPAAVPGITFLSGGQSEEEASVNLDAINKYSGK 170
V P + + + + A+ TV+AL+RTVPAAVPGI FLSGGQSEEEA++NL+A+NK
Sbjct: 221 VTPGADCKKKASPEEVAEYTVRALRRTVPAAVPGIVFLSGGQSEEEATLNLNAMNKLPLP 280
Query: 171 KPWALTFSYGRAL 183
KPWAL+FSYGRAL
Sbjct: 281 KPWALSFSYGRAL 293
>gnl|CDD|240231 PTZ00019, PTZ00019, fructose-bisphosphate aldolase; Provisional.
Length = 355
Score = 163 bits (415), Expect = 9e-50
Identities = 70/113 (61%), Positives = 87/113 (76%), Gaps = 1/113 (0%)
Query: 14 EELKKIAEAIVAPGKGILAADESVSTMGKRLQDIGCENTEEHRRLYRQLLFTSDKVIGDN 73
+EL + A+ I APGKGILAADES T+ KR IG ENTEE+RR YR+LLFT+ + +
Sbjct: 5 KELAETAKKIAAPGKGILAADESTGTIKKRFDPIGLENTEENRRAYRELLFTT-EGLEQY 63
Query: 74 ISGVILFHETLYQKADDGTPFVELLKQRGIIPGIKVDKGVVPLMGSEDECTTQ 126
ISGVILF ET+YQKA G FVELLK++GI+PGIKVDKG+V L G++ E +TQ
Sbjct: 64 ISGVILFEETVYQKAPSGKTFVELLKEKGIVPGIKVDKGLVTLPGTDGETSTQ 116
Score = 107 bits (269), Expect = 3e-28
Identities = 43/73 (58%), Positives = 53/73 (72%), Gaps = 2/73 (2%)
Query: 113 VVPLMGSEDECTTQ--AQATVQALQRTVPAAVPGITFLSGGQSEEEASVNLDAINKYSGK 170
V P + T Q A TV+ L RTVP A+PG+ FLSGGQSEEEAS+NL+A+NK +
Sbjct: 226 VTPGSDCGVKATPQEVAFYTVRTLSRTVPPALPGVMFLSGGQSEEEASLNLNAMNKLTLP 285
Query: 171 KPWALTFSYGRAL 183
+PWAL+FSYGRAL
Sbjct: 286 RPWALSFSYGRAL 298
>gnl|CDD|178074 PLN02455, PLN02455, fructose-bisphosphate aldolase.
Length = 358
Score = 158 bits (401), Expect = 1e-47
Identities = 66/113 (58%), Positives = 81/113 (71%), Gaps = 1/113 (0%)
Query: 14 EELKKIAEAIVAPGKGILAADESVSTMGKRLQDIGCENTEEHRRLYRQLLFTSDKVIGDN 73
+EL K A+ I PGKGILAADES T+GKRL I EN E +R+ R+LLFT+ +
Sbjct: 10 DELIKNAKYIATPGKGILAADESTGTIGKRLASINVENVESNRQALRELLFTAPGAL-QY 68
Query: 74 ISGVILFHETLYQKADDGTPFVELLKQRGIIPGIKVDKGVVPLMGSEDECTTQ 126
+SGVILF ETLYQK DG PFV++LK+ G++PGIKVDKG V L G+ E TTQ
Sbjct: 69 LSGVILFEETLYQKTSDGKPFVDVLKENGVLPGIKVDKGTVELAGTNGETTTQ 121
Score = 109 bits (273), Expect = 8e-29
Identities = 41/57 (71%), Positives = 49/57 (85%)
Query: 127 AQATVQALQRTVPAAVPGITFLSGGQSEEEASVNLDAINKYSGKKPWALTFSYGRAL 183
A+ TV+ALQRTVP AVPGI FLSGGQSEEEA++NL+A+NK KPW L+FS+GRAL
Sbjct: 244 AEYTVRALQRTVPPAVPGIVFLSGGQSEEEATLNLNAMNKLKTLKPWTLSFSFGRAL 300
>gnl|CDD|226116 COG3588, COG3588, Fructose-1,6-bisphosphate aldolase [Carbohydrate
transport and metabolism].
Length = 332
Score = 139 bits (353), Expect = 8e-41
Identities = 57/109 (52%), Positives = 66/109 (60%)
Query: 14 EELKKIAEAIVAPGKGILAADESVSTMGKRLQDIGCENTEEHRRLYRQLLFTSDKVIGDN 73
E L A VA GKG +AADES T KR G E TE RR R+ LFTS + D
Sbjct: 3 ERLNDTALKKVANGKGFIAADESGGTTPKRFDSYGIEETEYSRRDMRERLFTSPDFMEDY 62
Query: 74 ISGVILFHETLYQKADDGTPFVELLKQRGIIPGIKVDKGVVPLMGSEDE 122
I G ILF ET+ QKAD G P L K++GI+PGIKVDKG+ PL G + E
Sbjct: 63 ILGAILFEETMDQKADGGYPADYLWKEKGIVPGIKVDKGLKPLAGVQLE 111
Score = 75.2 bits (185), Expect = 2e-16
Identities = 36/94 (38%), Positives = 49/94 (52%), Gaps = 3/94 (3%)
Query: 92 TPFVELLKQRGIIPG--IKVDKGVVPLMGSEDECTTQAQATVQALQRTVPAAVPGITFLS 149
L ++R ++ G +K + E A+ T+ +L TVPA VPGI FLS
Sbjct: 201 KLLNALNEERVVMLGLILKTSMVISGKKSREASPDEVAEDTLYSLLSTVPAVVPGIVFLS 260
Query: 150 GGQSEEEASVNLDAINKYSGKKPWALTFSYGRAL 183
GG S EEA+ +L A N PW+L FS+ RAL
Sbjct: 261 GGYSSEEANAHLSANNG-ERPLPWSLIFSFSRAL 293
>gnl|CDD|188629 cd00344, FBP_aldolase_I, Fructose-bisphosphate aldolase class I.
Fructose-bisphosphate aldolase class I.
Fructose-1,6-bisphosphate aldolase is an enzyme of the
glycolytic and gluconeogenic pathways found in
vertebrates, plants, and bacteria. The enzyme catalyzes
the cleavage of fructose 1,6-bisphosphate to
glyceraldehyde 3-phosphate and dihydroxyacetone
phosphate (DHAP). Mutations in the aldolase genes in
humans cause hemolytic anemia and hereditary fructose
intolerance. The enzyme is a member of the class I
aldolase family, which utilizes covalent catalysis
through a Schiff base formed between a lysine residue of
the enzyme and ketose substrates. Although structurally
similar, the class II aldolases use a different
mechanism and are believed to have an independent
evolutionary origin.
Length = 328
Score = 137 bits (345), Expect = 9e-40
Identities = 75/114 (65%), Positives = 88/114 (77%)
Query: 13 QEELKKIAEAIVAPGKGILAADESVSTMGKRLQDIGCENTEEHRRLYRQLLFTSDKVIGD 72
++EL IA IVAPGKGILAADES ++ KRLQ IG ENTEE+RR YRQLL T+D +
Sbjct: 1 KKELSDIAHRIVAPGKGILAADESTGSIAKRLQSIGTENTEENRRFYRQLLLTADDRVNP 60
Query: 73 NISGVILFHETLYQKADDGTPFVELLKQRGIIPGIKVDKGVVPLMGSEDECTTQ 126
I GVILFHETLYQKADDG PF +++K +G + GIKVDKGVVPL G+ E TTQ
Sbjct: 61 RIGGVILFHETLYQKADDGRPFPQVIKSKGGVVGIKVDKGVVPLAGTNGETTTQ 114
Score = 77.5 bits (190), Expect = 3e-17
Identities = 45/57 (78%), Positives = 49/57 (85%)
Query: 127 AQATVQALQRTVPAAVPGITFLSGGQSEEEASVNLDAINKYSGKKPWALTFSYGRAL 183
A ATV AL+RTVP AV G+TFLSGGQSEEEAS+NL+AINK KPWALTFSYGRAL
Sbjct: 238 AMATVTALRRTVPPAVTGVTFLSGGQSEEEASINLNAINKCPLLKPWALTFSYGRAL 294
>gnl|CDD|215234 PLN02425, PLN02425, probable fructose-bisphosphate aldolase.
Length = 390
Score = 129 bits (326), Expect = 2e-36
Identities = 62/116 (53%), Positives = 83/116 (71%), Gaps = 1/116 (0%)
Query: 11 ALQEELKKIAEAIVAPGKGILAADESVSTMGKRLQDIGCENTEEHRRLYRQLLFTSDKVI 70
+ +EL + A+++ +PG+GILA DES +T GKRL IG +NTE +R+ YRQLL T+ +
Sbjct: 42 SYSDELVQTAKSVASPGRGILAIDESNATCGKRLASIGLDNTETNRQAYRQLLLTTPG-L 100
Query: 71 GDNISGVILFHETLYQKADDGTPFVELLKQRGIIPGIKVDKGVVPLMGSEDECTTQ 126
G+ ISG ILF ETLYQ DG FV+ L+ + I+PGIKVDKG+VPL GS +E Q
Sbjct: 101 GEYISGAILFEETLYQSTTDGKKFVDCLRDQNIVPGIKVDKGLVPLPGSNNESWCQ 156
Score = 72.0 bits (176), Expect = 3e-15
Identities = 40/87 (45%), Positives = 53/87 (60%), Gaps = 10/87 (11%)
Query: 97 LLKQRGIIPGIKVDKGVVPLMGSEDECTTQAQATVQALQRTVPAAVPGITFLSGGQSEEE 156
LLK + PG + + P T A+ T+ L+R VP AVPGI FLSGGQSE E
Sbjct: 257 LLKPSMVTPGAEHKEKASP--------ETIAKYTLTMLRRRVPPAVPGIMFLSGGQSEVE 308
Query: 157 ASVNLDAINKYSGKKPWALTFSYGRAL 183
A++NL+A+N+ PW ++FSY RAL
Sbjct: 309 ATLNLNAMNQ--SPNPWHVSFSYARAL 333
>gnl|CDD|177872 PLN02227, PLN02227, fructose-bisphosphate aldolase I.
Length = 399
Score = 117 bits (295), Expect = 6e-32
Identities = 63/117 (53%), Positives = 80/117 (68%), Gaps = 1/117 (0%)
Query: 11 ALQEELKKIAEAIVAPGKGILAADESVSTMGKRLQDIGCENTEEHRRLYRQLLFTSDKVI 70
A +EL K A+ I +PG GI+A DES +T GKRL IG ENTE +R+ YR LL ++ +
Sbjct: 51 AYADELVKTAKTIASPGHGIMAMDESNATCGKRLASIGLENTEANRQAYRTLLVSAPG-L 109
Query: 71 GDNISGVILFHETLYQKADDGTPFVELLKQRGIIPGIKVDKGVVPLMGSEDECTTQA 127
G ISG ILF ETLYQ DG V++L ++ I+PGIKVDKG+VPL+GS DE Q
Sbjct: 110 GQYISGAILFEETLYQSTTDGKKMVDVLVEQNIVPGIKVDKGLVPLVGSYDESWCQG 166
Score = 64.8 bits (157), Expect = 1e-12
Identities = 35/73 (47%), Positives = 48/73 (65%), Gaps = 4/73 (5%)
Query: 113 VVPLMGSEDECTTQ--AQATVQALQRTVPAAVPGITFLSGGQSEEEASVNLDAINKYSGK 170
V P + D T + A T++ L+ +P AVPGI FLSGGQSE EA++NL+A+N+
Sbjct: 272 VTPGAEATDRATPEQVASYTLKLLRNRIPPAVPGIMFLSGGQSELEATLNLNAMNQ--AP 329
Query: 171 KPWALTFSYGRAL 183
PW ++FSY RAL
Sbjct: 330 NPWHVSFSYARAL 342
>gnl|CDD|188636 cd00949, FBP_aldolase_I_bact, Fructose-1.6-bisphosphate aldolase
found in gram +/- bacteria. Fructose-1.6-bisphosphate
aldolase found in gram +/- bacteria. The enzyme
catalyzes the cleavage of fructose 1,6-bisphosphate to
glyceraldehyde 3-phosphate and dihydroxyacetone
phosphate (DHAP). The enzyme is member of the class I
aldolase family, which utilizes covalent catalysis
through a Schiff base formed between a lysine residue of
the enzyme and ketose substrates.
Length = 292
Score = 50.5 bits (121), Expect = 8e-08
Identities = 38/110 (34%), Positives = 59/110 (53%), Gaps = 16/110 (14%)
Query: 13 QEELKKIAEAIVAPGKGILAA-DESVSTMGKRLQDIGCE-----NTEEHRRLYRQL---L 63
QE+L+++ GKG +AA D+S + K L G E N EE L ++ +
Sbjct: 1 QEQLERMKS-----GKGFIAALDQSGGSTPKALAAYGIEEDAYSNEEEMFDLVHEMRTRI 55
Query: 64 FTSDKVIGDNISGVILFHETLYQKADDGTPFVELL-KQRGIIPGIKVDKG 112
TS GD I G ILF +T+ ++ +G P + L +++ I+P +KVDKG
Sbjct: 56 ITSPAFDGDKILGAILFEQTMDREI-EGKPTADYLWEKKQIVPFLKVDKG 104
>gnl|CDD|180045 PRK05377, PRK05377, fructose-1,6-bisphosphate aldolase; Reviewed.
Length = 296
Score = 50.3 bits (121), Expect = 9e-08
Identities = 39/115 (33%), Positives = 61/115 (53%), Gaps = 26/115 (22%)
Query: 13 QEELKKIAEAIVAPGKGILAA-DESVSTMGKRLQDIGCE-----NTEE-----HR---RL 58
QE+L+K+ GKG +AA D+S + K L+ G E N EE H R+
Sbjct: 4 QEQLEKMKN-----GKGFIAALDQSGGSTPKALKLYGVEEDAYSNEEEMFDLVHEMRTRI 58
Query: 59 YRQLLFTSDKVIGDNISGVILFHETLYQKADDGTPFVELL-KQRGIIPGIKVDKG 112
FT DK++G ILF +T+ ++ + G P + L +++G++P +KVDKG
Sbjct: 59 ITSPAFTGDKILG-----AILFEQTMDREIE-GKPTADYLWEKKGVVPFLKVDKG 107
>gnl|CDD|178415 PLN02820, PLN02820, 3-methylcrotonyl-CoA carboxylase, beta chain.
Length = 569
Score = 32.5 bits (74), Expect = 0.11
Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 8/83 (9%)
Query: 69 VIGDNISGVILFHETLYQKADDGTPFVELLKQRGIIPGIKVDKGVVPLMGSEDECTTQAQ 128
+IG+N ILF E+ A G F+EL QRGI P + + ++GS E + A+
Sbjct: 375 IIGNN---GILFTES----ALKGAHFIELCAQRGI-PLLFLQNITGFMVGSRSEASGIAK 426
Query: 129 ATVQALQRTVPAAVPGITFLSGG 151
A + + A VP IT + GG
Sbjct: 427 AGAKMVMAVACAKVPKITIIVGG 449
>gnl|CDD|222493 pfam14010, PEPcase_2, Phosphoenolpyruvate carboxylase. This family
of phosphoenolpyruvate carboxylases is based on
seqeunces not picked up by the model for PEPcase,
PF00311. Most of the family members are from Archaea.
Length = 476
Score = 31.8 bits (73), Expect = 0.19
Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
Query: 10 PALQEELKKIAEAIVAPGKGILAADESVSTMGKRLQDIGCENTEEHRRLYRQLLFTSDKV 69
P L+E+L+ A P L DE K D E+ EEHR LY LL +
Sbjct: 399 PNLKEDLEFAAR-FFNPEVAKLYLDEETVKEIKEDIDY-LEDYEEHRELYSLLLKALKEG 456
Query: 70 IGDNISGVIL 79
+ ++ IL
Sbjct: 457 LLKDLKEYIL 466
>gnl|CDD|213840 TIGR03631, bact_S13, 30S ribosomal protein S13. This model
describes bacterial ribosomal protein S13, to the
exclusion of the homologous archaeal S13P and
eukaryotic ribosomal protein S18. This model identifies
some (but not all) instances of chloroplast and
mitochondrial S13, which is of bacterial type [Protein
synthesis, Ribosomal proteins: synthesis and
modification].
Length = 113
Score = 27.8 bits (63), Expect = 1.7
Identities = 21/47 (44%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Query: 13 QEELKKIAEAIVAPGK--GILAADESVSTMGKRLQDIGCENTEEHRR 57
+EEL I E I A K G L + S++ KRL DIGC HRR
Sbjct: 48 EEELNAIREEIEAKYKVEGDLRREVSLNI--KRLMDIGCYRGLRHRR 92
>gnl|CDD|226356 COG3836, HpcH, 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase
[Carbohydrate transport and metabolism].
Length = 255
Score = 28.4 bits (64), Expect = 1.7
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 5/42 (11%)
Query: 10 PALQEELKKIAEAIVAPGK--GILAADESVSTMGKRLQDIGC 49
P +Q ++ I I A GK GILAAD + +R +G
Sbjct: 192 PEVQAAIEHIIARIRAAGKAAGILAADPA---DARRYLALGA 230
>gnl|CDD|233315 TIGR01213, pseudo_Pus10arc, tRNA pseudouridine(54/55) synthase.
Members of this family show twilight-zone similarity to
several predicted RNA pseudouridine synthases. All
trusted members of this family are archaeal. Several
eukaryotic homologs lack N-terminal homology including
two CXXC motifs [Hypothetical proteins, Conserved].
Length = 388
Score = 28.6 bits (64), Expect = 2.0
Identities = 17/75 (22%), Positives = 36/75 (48%), Gaps = 5/75 (6%)
Query: 15 ELKKIAEAIVAPGKGILAADESVSTMGKRLQDIGCENTEEHRRLYRQLLFTSDKVIGDNI 74
+L + E I GKG + + + ++++ E+HR++YR L+ V +++
Sbjct: 238 DLDPLEEEINTSGKGKVEVEGLKFATREEVEEV---KEEKHRKVYRALVEVDGPVSDEDL 294
Query: 75 SGVI--LFHETLYQK 87
+ L T+YQ+
Sbjct: 295 EELCKELEGATIYQR 309
>gnl|CDD|176658 cd06588, PhnB_like, Escherichia coli PhnB and similar proteins;
the E. coli phnB gene is found next to an operon
involved in the cleavage of carbon-phosphorus bonds in
unactivated alkylphosphonates. The Escherichia coli
phnB gene is found next to an operon of fourteen genes
(phnC-to-phnP) related to the cleavage of
carbon-phosphorus (C-P) bonds in unactivated
alkylphosphonates, supporting bacterial growth on
alkylphosphonates as the sole phosphorus source. It was
originally considered part of that operon. PhnB appears
to play no direct catalytic role in the usage of
alkylphosphonate. Although many of the proteins in this
family have been annotated as 3-demethylubiquinone-9
3-methyltransferase enzymes by automatic annotation
programs, the experimental evidence for this assignment
is lacking. In Escherichia coli, the gene coding
3-demethylubiquinone-9 3-methyltransferase enzyme is
ubiG, which belongs to the AdoMet-MTase protein family.
PhnB-like proteins adopt a structural fold similar to
bleomycin resistance proteins, glyoxalase I, and type I
extradiol dioxygenases.
Length = 128
Score = 26.8 bits (60), Expect = 3.7
Identities = 17/74 (22%), Positives = 30/74 (40%), Gaps = 18/74 (24%)
Query: 1 MTTYFNYPPPALQEELK-KIAEA-IVAPGKGILAAD----------ESVSTMGKRLQDIG 48
T + PP EE + K+ A + G+ ++A+D +S +
Sbjct: 28 SLTRYGEGPPPDPEEPEGKVMHAELTIGGQRLMASDGGPGFPFTFGNGISLS------VE 81
Query: 49 CENTEEHRRLYRQL 62
C++ EE RL+ L
Sbjct: 82 CDSEEEADRLFEAL 95
>gnl|CDD|198309 cd03200, GST_C_AIMP2, Glutathione S-transferase C-terminal-like,
alpha helical domain of Aminoacyl tRNA synthetase
complex-Interacting Multifunctional Protein 2.
Glutathione S-transferase (GST) C-terminal domain
family, Aminoacyl tRNA synthetase complex-Interacting
Multifunctional Protein (AIMP) 2 subfamily; AIMPs are
non-enzymatic cofactors that play critical roles in the
assembly and formation of a macromolecular multi-tRNA
synthetase protein complex that functions as a molecular
hub to coordinate protein synthesis. There are three
AIMPs, named AIMP1-3, which play diverse regulatory
roles. AIMP2, also called p38 or JTV-1, contains a
C-terminal domain with similarity to the C-terminal
alpha helical domain of GSTs. It plays an important role
in the control of cell fate via antiproliferative (by
enhancing the TGF-beta signal) and proapoptotic
(activation of p53 and TNF-alpha) activities. Its roles
in the control of cell proliferation and death suggest
that it is a potent tumor suppressor. AIMP2 heterozygous
mice with lower than normal expression of AIMP2 show
high susceptibility to tumorigenesis. AIMP2 is also a
substrate of Parkin, an E3 ubiquitin ligase that is
involved in the ubiquitylation and proteasomal
degradation of its substrates. Mutations in the Parkin
gene is found in 50% of patients with
autosomal-recessive early-onset parkinsonism. The
accumulation of AIMP2, due to impaired Parkin function,
may play a role in the pathogenesis of Parkinson's
disease.
Length = 96
Score = 26.3 bits (58), Expect = 4.8
Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Query: 148 LSGGQSEEEASVNLDAINKYSGKKPWAL 175
L G S+E+A+V L A+N G+ PW +
Sbjct: 32 LLEGSSKEKAAV-LRALNSALGRSPWLV 58
>gnl|CDD|219643 pfam07921, Fibritin_C, Fibritin C-terminal region. This family
features sequences bearing similarity to the C-terminal
portion of the bacteriophage T4 protein fibritin. This
protein is responsible for attachment of long tail
fibres to virus particle, and forms the 'whiskers' or
fibres on the neck of the virion. The region seen in
this family contains an N-terminal coiled-coil portion
and the C-terminal globular foldon domain (residues
457-486), which is essential for fibritin trimerisation
and folding. This domain consists of a beta-hairpin;
three such hairpins come together in a
beta-propeller-like arrangement in the trimer, which is
stabilised by hydrogen bonds, salt bridges and
hydrophobic interactions.
Length = 93
Score = 26.3 bits (58), Expect = 4.9
Identities = 19/76 (25%), Positives = 27/76 (35%), Gaps = 27/76 (35%)
Query: 37 VSTMGKRLQDIGCENTEEHRRLYRQLLFTSDKVIGDNISG----VILFHETLYQKADDGT 92
V+ + +QD+ IG+N SG VI + +Y G
Sbjct: 1 VNQLTNSVQDV-------------------QVEIGNNNSGLKGAVIKLSKDIYGTNPSGD 41
Query: 93 PFVELLKQRGIIPGIK 108
PF E RGI +K
Sbjct: 42 PFEE----RGIKKTVK 53
>gnl|CDD|131396 TIGR02343, chap_CCT_epsi, T-complex protein 1, epsilon subunit.
Members of this family, all eukaryotic, are part of the
group II chaperonin complex called CCT (chaperonin
containing TCP-1) or TRiC. The archaeal equivalent group
II chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
epsilon chain (part of a paralogous family) from
animals, plants, fungi, and other eukaryotes.
Length = 532
Score = 27.5 bits (61), Expect = 5.1
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 8/63 (12%)
Query: 50 ENTEEHRRLYRQLLFTSDKVIGDNISGVILFHETLYQKADDGTPFVELLKQRGIIPGIKV 109
+ +L +L + D IGD +GV++ L ++A E L +GI P IK+
Sbjct: 77 DVDNPIAKLMVELSKSQDDEIGDGTTGVVVLAGALLEQA-------EELLDKGIHP-IKI 128
Query: 110 DKG 112
+G
Sbjct: 129 AEG 131
>gnl|CDD|219342 pfam07227, DUF1423, Protein of unknown function (DUF1423). This
family represents a conserved region approximately 500
residues long within a number of Arabidopsis thaliana
proteins of unknown function.
Length = 446
Score = 27.4 bits (61), Expect = 5.5
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 33 ADESVSTMGKRLQDIGCENTEEHRRLYRQLLFTSDK 68
A ESV + +R+ ++ E EE + R +L + K
Sbjct: 1 ARESVDVVAERMHEMPDEYLEELKEALRGILEGAQK 36
>gnl|CDD|215621 PLN03188, PLN03188, kinesin-12 family protein; Provisional.
Length = 1320
Score = 26.8 bits (59), Expect = 8.0
Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 4 YFNYPPPALQEELKKIAEAIVAPGKGIL---AADESVSTMGKRLQDIGCENTEEHRRL 58
Y +LQ +L+ AEA+ A G+ ++ A+E+++ KR D E E ++++
Sbjct: 1177 YLRDENKSLQAQLRDTAEAVQAAGELLVRLKEAEEALTVAQKRAMDAEQEAAEAYKQI 1234
>gnl|CDD|200571 cd10947, CE4_SpPgdA_BsYjeA_like, Catalytic NodB homology domain of
Streptococcus pneumoniae peptidoglycan deacetylase PgdA,
Bacillus subtilis BsYjeA protein, and their bacterial
homologs. This family is represented by Streptococcus
pneumoniae peptidoglycan GlcNAc deacetylase (SpPgdA), a
member of the carbohydrate esterase 4 (CE4) superfamily.
SpPgdA protects gram-positive bacterial cell wall from
host lysozymes by deacetylating peptidoglycan
N-acetylglucosamine (GlcNAc) residues. It consists of
three separate domains: N-terminal, middle and
C-terminal (catalytic) domains. The catalytic NodB
homology domain is similar to the deformed (beta/alpha)8
barrel fold adopted by other CE4 esterases, which
harbors a mononuclear metalloenzyme employing a
conserved His-His-Asp zinc-binding triad closely
associated with conserved catalytic base (aspartic acid)
and acid (histidine) to carry out acid/base catalysis.
The enzyme is able to accept GlcNAc3 as a substrate,
with the N-acetyl of the middle sugar being removed by
the enzyme. This family also includes Bacillus subtilis
BsYjeA protein encoded by the yjeA gene, which is one of
the six polysaccharide deacetylase gene homologs (pdaA,
pdaB/ybaN, yheN, yjeA, yxkH and ylxY) in the Bacillus
subtilis genome. Although homology comparison shows that
the BsYjeA protein contains a polysaccharide deacetylase
domain, and was predicted to be a membrane-bound
xylanase or a membrane-bound chitooligosaccharide
deacetylase, more recent research indicates BsYjeA might
be a novel non-specific secretory endonuclease which
creates random nicks progressively on the two strands of
dsDNA, resulting in highly distinguishable
intermediates/products very different in chemical and
physical compositions over time. In addition, BsYjeA
shares several enzymatic properties with the
well-understood DNase I endonuclease. Both enzymes are
active on ssDNA and dsDNA, both generate random nicks,
and both require Mg2+ or Mn2+ for hydrolytic activity.
Length = 177
Score = 26.2 bits (58), Expect = 8.4
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 143 PGITFLSGGQSEEEASVNLDAINKYSGKKPWALTFSYG 180
P +T LS ++E++ + DAI K +G +P L YG
Sbjct: 64 PQLTKLSVAEAEKQINDTDDAIEKATGNRPTLLRPPYG 101
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.315 0.134 0.382
Gapped
Lambda K H
0.267 0.0805 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,566,435
Number of extensions: 887556
Number of successful extensions: 1018
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1004
Number of HSP's successfully gapped: 50
Length of query: 183
Length of database: 10,937,602
Length adjustment: 91
Effective length of query: 92
Effective length of database: 6,901,388
Effective search space: 634927696
Effective search space used: 634927696
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 56 (25.2 bits)