RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy12531
         (183 letters)



>3mmt_A Fructose-bisphosphate aldolase; ssgcid, structural genomics,
           seattle structural GE center for infectious disease,
           hydrolase; HET: 2FP; 2.35A {Bartonella henselae}
          Length = 347

 Score =  224 bits (573), Expect = 1e-73
 Identities = 59/118 (50%), Positives = 78/118 (66%)

Query: 9   PPALQEELKKIAEAIVAPGKGILAADESVSTMGKRLQDIGCENTEEHRRLYRQLLFTSDK 68
           P ++ E L+ IA  +V  GKGILAADES +T+GKR + IG E TE++RR YR++LFT+ +
Sbjct: 2   PGSMNERLEDIALTLVGAGKGILAADESTATIGKRFESIGVECTEDNRRAYREMLFTAKE 61

Query: 69  VIGDNISGVILFHETLYQKADDGTPFVELLKQRGIIPGIKVDKGVVPLMGSEDECTTQ 126
            +   ISGVILF ETL QKA  G    +L++  G +PGIKVD G  PL     E  T+
Sbjct: 62  AMESAISGVILFDETLRQKASTGQMLTDLIRDAGAVPGIKVDTGAKPLAAFPQETITE 119



 Score =  117 bits (295), Expect = 3e-32
 Identities = 37/57 (64%), Positives = 45/57 (78%), Gaps = 1/57 (1%)

Query: 127 AQATVQALQRTVPAAVPGITFLSGGQSEEEASVNLDAINKYSGKKPWALTFSYGRAL 183
           A+ TV  L++TVPAAVPGI FLSGGQ++EEA+ +L A+N   G  PW LTFSYGRAL
Sbjct: 246 AEKTVHVLKQTVPAAVPGIAFLSGGQTDEEATAHLSAMNAL-GALPWKLTFSYGRAL 301


>3bv4_A Fructose-bisphosphate aldolase A; lyase, acetylation, glycolysis,
           phosphoprotein, schiff base; HET: 13P; 1.70A
           {Oryctolagus cuniculus} PDB: 1ado_A* 1ewd_A 1zai_A*
           1zah_A* 1zaj_A* 1zal_A 2ot0_A 2ot1_A* 2qut_A 2quv_A
           3lge_A 3tu9_A* 3b8d_A 6ald_A* 1ex5_A 1ewe_A 2quu_A
           3dfn_A 3dfo_A 3dfp_A ...
          Length = 341

 Score =  224 bits (572), Expect = 1e-73
 Identities = 77/122 (63%), Positives = 91/122 (74%), Gaps = 2/122 (1%)

Query: 7   YPP--PALQEELKKIAEAIVAPGKGILAADESVSTMGKRLQDIGCENTEEHRRLYRQLLF 64
           +P   P  ++EL  IA  IVAPGKGILAADES  ++ KRLQ IG ENTEE+RR YRQLL 
Sbjct: 1   HPALTPEQKKELSDIAHRIVAPGKGILAADESTGSIAKRLQSIGTENTEENRRFYRQLLL 60

Query: 65  TSDKVIGDNISGVILFHETLYQKADDGTPFVELLKQRGIIPGIKVDKGVVPLMGSEDECT 124
           T+D  +   I GVILFHETLYQKADDG PF +++K +G + GIKVDKGVVPL G+  E T
Sbjct: 61  TADDRVNPCIGGVILFHETLYQKADDGRPFPQVIKSKGGVVGIKVDKGVVPLAGTNGETT 120

Query: 125 TQ 126
           TQ
Sbjct: 121 TQ 122



 Score =  122 bits (307), Expect = 4e-34
 Identities = 47/73 (64%), Positives = 54/73 (73%), Gaps = 2/73 (2%)

Query: 113 VVPLMGSEDECTTQ--AQATVQALQRTVPAAVPGITFLSGGQSEEEASVNLDAINKYSGK 170
           V P      + + +  A ATV AL+RTVP AV G+TFLSGGQSEEEAS+NL+AINK    
Sbjct: 230 VTPGHACTQKYSHEEIAMATVTALRRTVPPAVTGVTFLSGGQSEEEASINLNAINKCPLL 289

Query: 171 KPWALTFSYGRAL 183
           KPWALTFSYGRAL
Sbjct: 290 KPWALTFSYGRAL 302


>2pc4_A 41 kDa antigen, fructose-bisphosphate aldolase; invasion machinery,
           structu genomics, PSI, protein structure initiative;
           2.40A {Plasmodium falciparum} PDB: 2eph_A 1a5c_A
          Length = 369

 Score =  224 bits (572), Expect = 3e-73
 Identities = 65/128 (50%), Positives = 81/128 (63%), Gaps = 4/128 (3%)

Query: 2   TTYFNYP---PPALQEELKKIAEAIVAPGKGILAADESVSTMGKRLQDIGCENTEEHRRL 58
           T Y N P   P  + EEL   A+ +V  GKGILAADES  T+ KR  +I  ENT E+R  
Sbjct: 5   TEYMNAPKKLPADVAEELATTAQKLVQAGKGILAADESTQTIKKRFDNIKLENTIENRAS 64

Query: 59  YRQLLFTSDKVIGDNISGVILFHETLYQKADDGTPFVELLKQRGIIPGIKVDKGVVPLMG 118
           YR LLF +   +G  ISG ILF ETL+QK + G P V LL    IIPGIKVDKG+V +  
Sbjct: 65  YRDLLFGTKG-LGKFISGAILFEETLFQKNEAGVPMVNLLHNENIIPGIKVDKGLVNIPC 123

Query: 119 SEDECTTQ 126
           +++E +TQ
Sbjct: 124 TDEEKSTQ 131



 Score =  119 bits (299), Expect = 1e-32
 Identities = 44/73 (60%), Positives = 51/73 (69%), Gaps = 3/73 (4%)

Query: 113 VVPLMGSEDECTTQ--AQATVQALQRTVPAAVPGITFLSGGQSEEEASVNLDAINKYSGK 170
           V        + TTQ     TV+ L+RTVP A+PG+ FLSGGQSEEEASVNL++IN   G 
Sbjct: 241 VTAGYECTAKTTTQDVGFLTVRTLRRTVPPALPGVVFLSGGQSEEEASVNLNSINAL-GP 299

Query: 171 KPWALTFSYGRAL 183
            PWALTFSYGRAL
Sbjct: 300 HPWALTFSYGRAL 312


>2qap_A Fructose-1,6-bisphosphate aldolase; beta barrel,
           fructose-1,6-bisphosphate teminal tail, lyase; 1.59A
           {Leishmania mexicana} SCOP: c.1.10.1 PDB: 2qdg_A*
           2qdh_A* 1epx_A 1f2j_A
          Length = 391

 Score =  218 bits (557), Expect = 9e-71
 Identities = 57/123 (46%), Positives = 75/123 (60%), Gaps = 2/123 (1%)

Query: 5   FNYPPPALQEELKKIAEAIVAPGKGILAADESVSTMGKRLQDIGCENTEEHRRLYRQLLF 64
           +N      + EL    + +  PGKG+LAADES+ +  KR Q IG  NTEEHRR YR L+ 
Sbjct: 34  YNRLKTPYESELIATVKKLTTPGKGLLAADESIGSCTKRFQPIGLSNTEEHRRQYRALML 93

Query: 65  TSDKVIGDNISGVILFHETLYQKADDGTPFVELLKQRGIIPGIKVDKGVVPLM-GSEDEC 123
            ++      ISGVIL  ET+ QKA +G  F E L  RG++PGIK D G+ PL+ G+E E 
Sbjct: 94  EAEG-FEQYISGVILHDETVGQKASNGQTFPEYLTARGVVPGIKTDMGLCPLLEGAEGEQ 152

Query: 124 TTQ 126
            T+
Sbjct: 153 MTE 155



 Score =  121 bits (305), Expect = 2e-33
 Identities = 35/73 (47%), Positives = 44/73 (60%), Gaps = 2/73 (2%)

Query: 113 VVPLMGSEDECTTQ--AQATVQALQRTVPAAVPGITFLSGGQSEEEASVNLDAINKYSGK 170
           VVP   S      +  A  TV  L RT+PA +PG+ FLSGG SE +AS  L+AIN     
Sbjct: 263 VVPGAESGKTAAPEQVAHYTVMTLARTMPAMLPGVMFLSGGLSEVQASEYLNAINNSPLP 322

Query: 171 KPWALTFSYGRAL 183
           +P+ L+FSY RAL
Sbjct: 323 RPYFLSFSYARAL 335


>3kx6_A Fructose-bisphosphate aldolase; ssgcid, NIH, niaid, SBRI, UW,
           emerald biostructures, glycolysis, lyase, STRU genomics;
           HET: CIT; 2.10A {Babesia bovis}
          Length = 379

 Score =  216 bits (551), Expect = 5e-70
 Identities = 58/118 (49%), Positives = 81/118 (68%), Gaps = 1/118 (0%)

Query: 9   PPALQEELKKIAEAIVAPGKGILAADESVSTMGKRLQDIGCENTEEHRRLYRQLLFTSDK 68
                +EL + A  I +PGKGILAADES  T+ KR  ++G ENTE++R  YR +LFT+  
Sbjct: 27  SQERAKELAENASFIASPGKGILAADESTGTIQKRFDNVGVENTEKNRAEYRSILFTTKG 86

Query: 69  VIGDNISGVILFHETLYQKADDGTPFVELLKQRGIIPGIKVDKGVVPLMGSEDECTTQ 126
            +G  ISG ILF ETL+Q+A +G   V+LL+  GI+PGIKVDKG+V +  +++E +T 
Sbjct: 87  -LGKYISGCILFEETLFQQAPNGQNMVDLLRAEGILPGIKVDKGLVTIPNTDEEVSTT 143



 Score =  119 bits (300), Expect = 8e-33
 Identities = 37/73 (50%), Positives = 49/73 (67%), Gaps = 3/73 (4%)

Query: 113 VVPLMGSEDECTTQ--AQATVQALQRTVPAAVPGITFLSGGQSEEEASVNLDAINKYSGK 170
           V   +  +D+   Q     T +AL+RTVP A+PG+ FLSGGQSE  A+ +L+ INK   K
Sbjct: 253 VTQGVDCKDKPAPQTVGFLTSRALRRTVPPALPGVMFLSGGQSESMATRHLNEINKC-NK 311

Query: 171 KPWALTFSYGRAL 183
            PW+L+FSYGRAL
Sbjct: 312 HPWSLSFSYGRAL 324


>3mbd_A Fructose-bisphosphate aldolase; glycolysis, lyase, schiff base;
           2.00A {Encephalitozoon cuniculi} PDB: 3mbf_A* 3qrh_A
          Length = 342

 Score =  209 bits (533), Expect = 8e-68
 Identities = 50/121 (41%), Positives = 71/121 (58%), Gaps = 3/121 (2%)

Query: 6   NYPPPALQEELKKIAEAIVAPGKGILAADESVSTMGKRLQDIGCENTEEHRRLYRQLLFT 65
           +         L   A+ I+  GKGILAADE+  T+G+R + +G  NTEE+RR +R++LF+
Sbjct: 4   SMMDCDHLLRLGMTAKKILENGKGILAADETPKTLGRRFEKLGITNTEENRRKFREILFS 63

Query: 66  SDKVIGDNISGVILFHETLYQKADDGTPFVELLKQRGIIPGIKVDKGVVPLMGSEDECTT 125
           +   I   I GVIL  ET  Q +  G P  ELLK++GI  GIK+DKG++     E E  +
Sbjct: 64  TKG-IERYIGGVILNQETFEQTSGSGVPLTELLKKKGIEIGIKLDKGLIDY--KEKEKIS 120

Query: 126 Q 126
            
Sbjct: 121 V 121



 Score =  123 bits (310), Expect = 2e-34
 Identities = 31/73 (42%), Positives = 44/73 (60%), Gaps = 2/73 (2%)

Query: 113 VVPLMGSEDECTTQ--AQATVQALQRTVPAAVPGITFLSGGQSEEEASVNLDAINKYSGK 170
           V     S ++ T +  A  T++AL  T+P  +PGI FLSGG   E+A   L+AIN   G 
Sbjct: 229 VTSGQLSNEKYTPKKVATFTLRALLSTIPCGIPGIVFLSGGHGSEDAIGFLNAINMERGC 288

Query: 171 KPWALTFSYGRAL 183
           + W+L+FS+ RAL
Sbjct: 289 RTWSLSFSFARAL 301


>2iqt_A Fructose-bisphosphate aldolase class 1; TIM berrel, structural
           genomics, PSI-2; 2.46A {Porphyromonas gingivalis}
          Length = 296

 Score =  172 bits (438), Expect = 5e-54
 Identities = 27/118 (22%), Positives = 45/118 (38%), Gaps = 10/118 (8%)

Query: 17  KKIAEAIVAPGKGILAADESVSTMGKRLQDIGCENTE--------EHRRLYRQLLFTSDK 68
           K+  + +      + A D+S  +  K L+  G +           +     R  + TS  
Sbjct: 6   KEQLQQMRQAPGFVGALDQSGGSTPKALKAYGIQPDAYQSEEEMFDLIHQMRTRMITSPA 65

Query: 69  VIGDNISGVILFHETLYQKADDGTPFVELLKQRGIIPGIKVDKGVVPLMGSEDECTTQ 126
                I GVILF  T+  K +       L ++R I+P +KVDKG+            +
Sbjct: 66  FATGKIIGVILFERTMRGKIEGMPTADFLWEKRHIVPFLKVDKGLQDEAN--GVQLMK 121



 Score = 76.2 bits (188), Expect = 3e-17
 Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 8/47 (17%)

Query: 137 TVPAAVPGITFLSGGQSEEEASVNLDAINKYSGKKPWALTFSYGRAL 183
                +  +  LSGG S E+A+  L   +         +  S+ RAL
Sbjct: 228 IEHPMMLRVVALSGGYSREQANELLSRNHG--------VIASFSRAL 266


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
            acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
            synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 45.8 bits (108), Expect = 2e-06
 Identities = 36/206 (17%), Positives = 53/206 (25%), Gaps = 83/206 (40%)

Query: 33   ADESV-STMGKRLQDIGCENTEE---H---------RRLYRQLLFTS-----------DK 68
            AD     T G  + DI   N      H         R  Y  ++F +            K
Sbjct: 1649 ADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFK 1708

Query: 69   VIGDNISGVILFH--ETLYQKADDGTPF------------VELLKQRGIIPGIKV----- 109
             I ++ +          L       T F             E LK +G+IP         
Sbjct: 1709 EINEHSTSYTFRSEKGLLSA-----TQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHS 1763

Query: 110  ---------DKGVVPLMGSEDECTTQAQATV----QALQRTVP-----------AAV-PG 144
                        V+ +   E          V      +Q  VP            A+ PG
Sbjct: 1764 LGEYAALASLADVMSI---ES-----LVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPG 1815

Query: 145  ITFLSGGQSEEEASVNLDAINKYSGK 170
                S  Q   +  V  + + K +G 
Sbjct: 1816 RVAASFSQEALQYVV--ERVGKRTGW 1839


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 44.1 bits (103), Expect = 1e-05
 Identities = 27/205 (13%), Positives = 66/205 (32%), Gaps = 67/205 (32%)

Query: 4   YFNYPPPALQEELKKIAEAIVAPGKGILAA--DESVSTMGKRLQDIGCE----------- 50
           Y +  P  L  E+       ++    I+A    + ++T     + + C+           
Sbjct: 310 YLDCRPQDLPREVLTTNPRRLS----IIAESIRDGLATW-DNWKHVNCDKLTTIIESSLN 364

Query: 51  --NTEEHRRLYRQL-LFTSDKVIGDNISGVILFHETLYQKADDGTP--FVELLKQRGIIP 105
                E+R+++ +L +F        +I  ++L    ++           V  L +  ++ 
Sbjct: 365 VLEPAEYRKMFDRLSVFPPS-A---HIPTILL--SLIWFDVIKSDVMVVVNKLHKYSLV- 417

Query: 106 GIKVDKGVVPLMGSEDECTTQAQATVQALQRTVPAAVPGITFLSGGQSEEEASVNLDAIN 165
               +K                    Q  + T+  ++P I      + E E +++   ++
Sbjct: 418 ----EK--------------------QPKESTI--SIPSIYLELKVKLENEYALHRSIVD 451

Query: 166 KYSGKK---PWALT--------FSY 179
            Y+  K      L         +S+
Sbjct: 452 HYNIPKTFDSDDLIPPYLDQYFYSH 476



 Score = 36.4 bits (83), Expect = 0.004
 Identities = 30/204 (14%), Positives = 59/204 (28%), Gaps = 63/204 (30%)

Query: 11  ALQEELKKI--AEAIV-----APGKGILAA----DESV-STMGKRLQ--DIGCENTEEHR 56
            L++ L ++  A+ ++       GK  +A        V   M  ++   ++   N+ E  
Sbjct: 139 KLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETV 198

Query: 57  -----RLYRQLL--FTSDKVIGDNISGVI---------LFHETLYQKA----DDGTPFVE 96
                +L  Q+   +TS      NI   I         L     Y+       +    V+
Sbjct: 199 LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN----VQ 254

Query: 97  LLKQRGIIPGIKVDKGVVPLMGSED-EC----TTQAQATVQALQRTVPAAVPGITFLSGG 151
                        +          +  C    TT+ +     L       +  +   S  
Sbjct: 255 -------------NAKAWNAF---NLSCKILLTTRFKQVTDFLSAATTTHIS-LDHHSMT 297

Query: 152 QSEEEASVNLDAINKYSGKKPWAL 175
            + +E       + KY   +P  L
Sbjct: 298 LTPDEV---KSLLLKYLDCRPQDL 318


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 28.0 bits (61), Expect = 1.3
 Identities = 7/29 (24%), Positives = 14/29 (48%), Gaps = 5/29 (17%)

Query: 13 QEELKKIAEA---IVAPGKG-ILAADESV 37
          ++ LKK+ +A   + A      LA   ++
Sbjct: 19 KQALKKL-QASLKLYADDSAPALAIKATM 46


>2np9_A DPGC; protein inhibitor complex, oxidoreductase; HET: YE1; 2.45A
           {Streptomyces toyocaensis} PDB: 2pg8_A*
          Length = 440

 Score = 27.5 bits (61), Expect = 2.9
 Identities = 7/65 (10%), Positives = 18/65 (27%), Gaps = 3/65 (4%)

Query: 7   YPPPALQEELKKIAEAIVAPGKGILAADESVSTMGKRLQDIGCENTEEHRRLYRQLLFTS 66
             P  L   +++    +      +LA    ++   +          E    +    L+  
Sbjct: 369 VEPDELDAAIERSLTRLDG--DAVLANRRMLNLADESPDGFRAYMAEF-ALMQALRLYGH 425

Query: 67  DKVIG 71
           D +  
Sbjct: 426 DVIDK 430


>3irh_A HD domain protein; phosphohydrolase, dntpase, structural genomics,
           P protein structure initiative, midwest center for
           structural genomics; HET: DGT DTP; 2.40A {Enterococcus
           faecalis} PDB: 2o6i_A*
          Length = 480

 Score = 27.4 bits (60), Expect = 3.4
 Identities = 12/60 (20%), Positives = 20/60 (33%), Gaps = 9/60 (15%)

Query: 46  DIGCENTEEHRRL----YRQLLFTSDKVIGDNISGVILFHETLYQKADDGTPFVELLKQR 101
           D+G EN           Y++     +KV  D +   I     +     + +  V    QR
Sbjct: 12  DLGTENLYFQSNAMTIPYKEQRLPIEKVFRDPVHNYIHVQHQVILDLIN-SAEV----QR 66


>2dch_X Putative homing endonuclease; alpha/beta fold, hydrolase; 2.06A
           {Thermoproteus}
          Length = 216

 Score = 26.2 bits (57), Expect = 5.8
 Identities = 16/88 (18%), Positives = 28/88 (31%), Gaps = 8/88 (9%)

Query: 29  GILAADESVSTMGK-RLQDIGCENTEEHRRLYRQLLFTSDKVIGDNISGVILFHETLYQK 87
           G++AAD  +   G   +        ++   L +        +  D  +GV      +  +
Sbjct: 29  GLIAADGHLDEEGYITILQKDRRFIDKIVALLKSAEIKISSLFYDKGAGVWKI--KVKDE 86

Query: 88  ADDGTPFVELLKQRGIIPGIKVDKGVVP 115
                     L   G+IPG K      P
Sbjct: 87  -----RLYRYLVNNGVIPGKKAHVLRPP 109


>3ibj_A CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE2A, GAF-domains,
           allosteric regulation hydrolase, membrane; 3.02A {Homo
           sapiens}
          Length = 691

 Score = 26.6 bits (58), Expect = 6.1
 Identities = 12/41 (29%), Positives = 16/41 (39%), Gaps = 5/41 (12%)

Query: 30  ILAAD-----ESVSTMGKRLQDIGCENTEEHRRLYRQLLFT 65
           ILA D          + K  +     N ++H RL   LL T
Sbjct: 552 ILATDLAHHLRIFKDLQKMAEVGYDRNNKQHHRLLLCLLMT 592


>1top_A Troponin C; contractIle system protein; 1.78A {Gallus gallus}
          SCOP: a.39.1.5 PDB: 1ncy_A 1ncz_A 1ncx_A 1ytz_C* 1yv0_C
          1tnw_A 1tnx_A 5tnc_A 2w49_0 2w4u_0 4tnc_A 1a2x_A 1tcf_A
          1tn4_A 2tn4_A 1aj4_A 1jc2_A 1fi5_A 1sbj_A 1scv_A ...
          Length = 162

 Score = 25.6 bits (57), Expect = 7.3
 Identities = 11/43 (25%), Positives = 22/43 (51%)

Query: 13 QEELKKIAEAIVAPGKGILAADESVSTMGKRLQDIGCENTEEH 55
          +EEL  I E +   G G +  +E +  M +++++     +EE 
Sbjct: 55 KEELDAIIEEVDEDGSGTIDFEEFLVMMVRQMKEDAKGKSEEE 97


>1dtl_A Cardiac troponin C; helix-turn-helix, structural protein; HET:
          BEP; 2.15A {Gallus gallus} SCOP: a.39.1.5 PDB: 1j1d_A
          1j1e_A 2jt3_A 2jt0_A 1la0_A 2jtz_A* 2jt8_A* 2kfx_T*
          1wrk_A* 1wrl_A* 1ap4_A 1lxf_C* 1mxl_C 1spy_A 2krd_C*
          2l1r_A* 3rv5_A* 2ctn_A 2kgb_C 2jxl_A ...
          Length = 161

 Score = 25.2 bits (56), Expect = 9.4
 Identities = 11/43 (25%), Positives = 22/43 (51%)

Query: 13 QEELKKIAEAIVAPGKGILAADESVSTMGKRLQDIGCENTEEH 55
           EEL+++ + +   G G +  DE +  M + ++D     +EE 
Sbjct: 54 PEELQEMIDEVDEDGSGTVDFDEFLVMMVRSMKDDSKGKSEEE 96


>3r8n_M 30S ribosomal protein S13; protein biosynthesis, RNA, tRNA,
          transfer RNA, 16S ribosomal subunit, RRF; 3.00A
          {Escherichia coli} PDB: 2ykr_M 3oaq_M 3ofa_M 3ofx_M
          3ofo_M 3r8o_M 4a2i_M 3i1m_M 1vs7_M* 3e1a_F 3e1c_F
          1vs5_M 3i1o_M 3i1q_M 3i1s_M 3i1z_M 3i21_M 3iyx_M 3iyy_M
          3izv_Q* ...
          Length = 114

 Score = 24.7 bits (55), Expect = 9.9
 Identities = 9/16 (56%), Positives = 10/16 (62%)

Query: 42 KRLQDIGCENTEEHRR 57
          KRL D+GC     HRR
Sbjct: 77 KRLMDLGCYRGLRHRR 92


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.315    0.134    0.382 

Gapped
Lambda     K      H
   0.267   0.0857    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,858,766
Number of extensions: 169593
Number of successful extensions: 519
Number of sequences better than 10.0: 1
Number of HSP's gapped: 508
Number of HSP's successfully gapped: 33
Length of query: 183
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 95
Effective length of database: 4,244,745
Effective search space: 403250775
Effective search space used: 403250775
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 54 (24.3 bits)