RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12531
(183 letters)
>d1zaia1 c.1.10.1 (A:1-363) Fructose-1,6-bisphosphate aldolase
{Rabbit (Oryctolagus cuniculus), muscle isozyme [TaxId:
9986]}
Length = 363
Score = 182 bits (464), Expect = 1e-57
Identities = 77/123 (62%), Positives = 92/123 (74%), Gaps = 2/123 (1%)
Query: 6 NYPP--PALQEELKKIAEAIVAPGKGILAADESVSTMGKRLQDIGCENTEEHRRLYRQLL 63
++P P ++EL IA IVAPGKGILAADES ++ KRLQ IG ENTEE+RR YRQLL
Sbjct: 3 SHPALTPEQKKELSDIAHRIVAPGKGILAADESTGSIAKRLQSIGTENTEENRRFYRQLL 62
Query: 64 FTSDKVIGDNISGVILFHETLYQKADDGTPFVELLKQRGIIPGIKVDKGVVPLMGSEDEC 123
T+D + I GVILFHETLYQKADDG PF +++K +G + GIKVDKGVVPL G+ E
Sbjct: 63 LTADDRVNPCIGGVILFHETLYQKADDGRPFPQVIKSKGGVVGIKVDKGVVPLAGTNGET 122
Query: 124 TTQ 126
TTQ
Sbjct: 123 TTQ 125
Score = 83.5 bits (206), Expect = 4e-20
Identities = 45/59 (76%), Positives = 49/59 (83%)
Query: 125 TQAQATVQALQRTVPAAVPGITFLSGGQSEEEASVNLDAINKYSGKKPWALTFSYGRAL 183
A ATV AL+RTVP AV G+TFLSGGQSEEEAS+NL+AINK KPWALTFSYGRAL
Sbjct: 247 EIAMATVTALRRTVPPAVTGVTFLSGGQSEEEASINLNAINKCPLLKPWALTFSYGRAL 305
>d2qapa1 c.1.10.1 (A:1-357) Fructose-1,6-bisphosphate aldolase
{Trypanosome (Leishmania mexicana) [TaxId: 5665]}
Length = 357
Score = 174 bits (443), Expect = 1e-54
Identities = 57/125 (45%), Positives = 75/125 (60%), Gaps = 2/125 (1%)
Query: 3 TYFNYPPPALQEELKKIAEAIVAPGKGILAADESVSTMGKRLQDIGCENTEEHRRLYRQL 62
+N + EL + + PGKG+LAADES+ + KR Q IG NTEEHRR YR L
Sbjct: 12 PAYNRLKTPYESELIATVKKLTTPGKGLLAADESIGSCTKRFQPIGLSNTEEHRRQYRAL 71
Query: 63 LFTSDKVIGDNISGVILFHETLYQKADDGTPFVELLKQRGIIPGIKVDKGVVPLM-GSED 121
+ ++ ISGVIL ET+ QKA +G F E L RG++PGIK D G+ PL+ G+E
Sbjct: 72 MLEAEG-FEQYISGVILHDETVGQKASNGQTFPEYLTARGVVPGIKTDMGLCPLLEGAEG 130
Query: 122 ECTTQ 126
E T+
Sbjct: 131 EQMTE 135
Score = 87.4 bits (216), Expect = 2e-21
Identities = 31/61 (50%), Positives = 39/61 (63%)
Query: 123 CTTQAQATVQALQRTVPAAVPGITFLSGGQSEEEASVNLDAINKYSGKKPWALTFSYGRA 182
A TV L RT+PA +PG+ FLSGG SE +AS L+AIN +P+ L+FSY RA
Sbjct: 255 PEQVAHYTVMTLARTMPAMLPGVMFLSGGLSEVQASEYLNAINNSPLPRPYFLSFSYARA 314
Query: 183 L 183
L
Sbjct: 315 L 315
>d1qo5a_ c.1.10.1 (A:) Fructose-1,6-bisphosphate aldolase {Human
(Homo sapiens), liver isozyme [TaxId: 9606]}
Length = 360
Score = 173 bits (439), Expect = 4e-54
Identities = 68/122 (55%), Positives = 87/122 (71%), Gaps = 2/122 (1%)
Query: 7 YPP--PALQEELKKIAEAIVAPGKGILAADESVSTMGKRLQDIGCENTEEHRRLYRQLLF 64
+P ++EL +IA++IVA GKGILAADESV TMG RLQ I ENTEE+RR +R++LF
Sbjct: 4 FPALTQEQKKELSEIAQSIVANGKGILAADESVGTMGNRLQRIKVENTEENRRQFREILF 63
Query: 65 TSDKVIGDNISGVILFHETLYQKADDGTPFVELLKQRGIIPGIKVDKGVVPLMGSEDECT 124
+ D I +I GVILFHETLYQK G F +LK++GI+ GIK+D+G PL G+ E T
Sbjct: 64 SVDSSINQSIGGVILFHETLYQKDSQGKLFRNILKEKGIVVGIKLDQGGAPLAGTNKETT 123
Query: 125 TQ 126
Q
Sbjct: 124 IQ 125
Score = 77.7 bits (191), Expect = 6e-18
Identities = 44/83 (53%), Positives = 53/83 (63%), Gaps = 3/83 (3%)
Query: 104 IPGIKVD-KGVVPLMGSEDECTTQ--AQATVQALQRTVPAAVPGITFLSGGQSEEEASVN 160
+ G + V + T + A ATV AL RTVPAAVPGI FLSGG SEE+A++N
Sbjct: 223 LEGTLLKPNMVTAGHACTKKYTPEQVAMATVTALHRTVPAAVPGICFLSGGMSEEDATLN 282
Query: 161 LDAINKYSGKKPWALTFSYGRAL 183
L+AIN KPW L+FSYGRAL
Sbjct: 283 LNAINLCPLPKPWKLSFSYGRAL 305
>d1a5ca_ c.1.10.1 (A:) Fructose-1,6-bisphosphate aldolase
{Plasmodium falciparum [TaxId: 5833]}
Length = 342
Score = 170 bits (432), Expect = 4e-53
Identities = 61/118 (51%), Positives = 77/118 (65%), Gaps = 1/118 (0%)
Query: 9 PPALQEELKKIAEAIVAPGKGILAADESVSTMGKRLQDIGCENTEEHRRLYRQLLFTSDK 68
P + EEL A+ +V GKGILAADES T+ KR +I ENT E+R YR LLF +
Sbjct: 2 PADVAEELATTAQKLVQAGKGILAADESTQTIKKRFDNIKLENTIENRASYRDLLFGTKG 61
Query: 69 VIGDNISGVILFHETLYQKADDGTPFVELLKQRGIIPGIKVDKGVVPLMGSEDECTTQ 126
+G ISG ILF ETL+QK + G P V LL IIPGIKVDKG+V + +++E +TQ
Sbjct: 62 -LGKFISGAILFEETLFQKNEAGVPMVNLLHNENIIPGIKVDKGLVNIPCTDEEKSTQ 118
Score = 84.7 bits (209), Expect = 2e-20
Identities = 43/88 (48%), Positives = 54/88 (61%), Gaps = 4/88 (4%)
Query: 99 KQRGIIPGIKVD-KGVVPLMGSEDECT--TQAQATVQALQRTVPAAVPGITFLSGGQSEE 155
+ ++ G + V + T TV+ L+RTVP A+PG+ FLSGGQSEE
Sbjct: 213 ENGVLLEGALLKPNMVTAGYECTAKTTTQDVGFLTVRTLRRTVPPALPGVVFLSGGQSEE 272
Query: 156 EASVNLDAINKYSGKKPWALTFSYGRAL 183
EASVNL++IN G PWALTFSYGRAL
Sbjct: 273 EASVNLNSINAL-GPHPWALTFSYGRAL 299
>d1jvaa3 d.95.2.2 (A:582-698) VMA1-derived endonuclease (VDE)
PI-SceI {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 117
Score = 26.9 bits (59), Expect = 0.84
Identities = 10/68 (14%), Positives = 18/68 (26%), Gaps = 3/68 (4%)
Query: 42 KRLQDIGCENTEEHRRLYRQLLFTSDKVIGDNISGVILFHETLYQKADDGTPFVELLKQR 101
K + + R + L SD + D D V L +
Sbjct: 3 KNIPSFLSTDNIGTRETFLAGLIDSDGYVTDEHGIKATIKTIHTSVRDG---LVSLARSL 59
Query: 102 GIIPGIKV 109
G++ +
Sbjct: 60 GLVVSVNA 67
>d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily
{Sulfolobus solfataricus [TaxId: 2287]}
Length = 244
Score = 27.0 bits (58), Expect = 1.4
Identities = 5/22 (22%), Positives = 10/22 (45%)
Query: 42 KRLQDIGCENTEEHRRLYRQLL 63
K ++ C T E +Y+ +
Sbjct: 1 KIETNVYCNLTPEQAAMYKAEV 22
>d1wuis1 e.19.1.1 (S:1-267) Nickel-iron hydrogenase, small subunit
{Desulfovibrio vulgaris [TaxId: 881]}
Length = 267
Score = 26.4 bits (58), Expect = 2.0
Identities = 26/117 (22%), Positives = 42/117 (35%), Gaps = 16/117 (13%)
Query: 40 MGKR------LQDIGCE-NTEEHRRLYRQLLFTSDKVIGDNISGVILFHETLYQKADDGT 92
MG R L + C +E R + + D +I D +S + +HET+ A G
Sbjct: 2 MGPRRPSVVYLHNAECTGCSESVLRAFEPYI---DTLILDTLS--LDYHETIM--AAAGD 54
Query: 93 PFVELLKQ--RGIIPGIKVDKGVVPLMGSEDECTTQAQATVQALQRTVPAAVPGITF 147
L+Q I V +G +P + + R +P A I +
Sbjct: 55 AAEAALEQAVNSPHGFIAVVEGGIPTAANGIYGKVANHTMLDICSRILPKAQAVIAY 111
>d1qyia_ c.108.1.13 (A:) Hypothetical protein MW1667 (SA1546)
{Staphylococcus aureus [TaxId: 1280]}
Length = 380
Score = 26.3 bits (57), Expect = 2.3
Identities = 11/83 (13%), Positives = 24/83 (28%), Gaps = 7/83 (8%)
Query: 32 AADESVSTMGKRLQDIGCENTEEHRRLYRQLLF-------TSDKVIGDNISGVILFHETL 84
A + L + + +Y++ K+ ++ E +
Sbjct: 154 FATTELHVSDATLFSLKGALWTLAQEVYQEWYLGSKLYEDVEKKIARTTFKTGYIYQEII 213
Query: 85 YQKADDGTPFVELLKQRGIIPGI 107
+ D+ + LK G GI
Sbjct: 214 LRPVDEVKVLLNDLKGAGFELGI 236
>d1jgta1 c.26.2.1 (A:210-508) beta-Lactam synthetase {Streptomyces
clavuligerus [TaxId: 1901]}
Length = 299
Score = 26.1 bits (56), Expect = 2.6
Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 119 SEDECTTQAQATV-QALQRTVPAAVPGITFLSGG 151
E E +A + +A+ + V + LSGG
Sbjct: 9 PEGEAVAAVRAALEKAVAQRVTPGDTPLVVLSGG 42
>d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish
(Danio rerio) [TaxId: 7955]}
Length = 346
Score = 26.1 bits (56), Expect = 3.3
Identities = 8/36 (22%), Positives = 13/36 (36%)
Query: 42 KRLQDIGCENTEEHRRLYRQLLFTSDKVIGDNISGV 77
K Q + C T + LY+ L + V +
Sbjct: 12 KIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKI 47
>d2o6ia1 a.211.1.1 (A:1-453) Hypothetical protein EF1143
{Enterococcus faecalis [TaxId: 1351]}
Length = 453
Score = 25.5 bits (55), Expect = 5.2
Identities = 7/41 (17%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 59 YRQLLFTSDKVIGDNISGVILFHETLYQKADDGTPFVELLK 99
Y++ +KV D + I + + + V+ L+
Sbjct: 5 YKEQRLPIEKVFRDPVHNYIHVQHQVILDLIN-SAEVQRLR 44
>d2c1ia1 c.6.2.3 (A:268-463) Peptidoglycan GlcNAc deacetylase
C-terminal domain {Streptococcus pneumoniae [TaxId:
1313]}
Length = 196
Score = 24.4 bits (52), Expect = 7.8
Identities = 6/27 (22%), Positives = 12/27 (44%)
Query: 76 GVILFHETLYQKADDGTPFVELLKQRG 102
++L H+ + +E LK +G
Sbjct: 145 SIVLMHDIHSPTVNALPRVIEYLKNQG 171
>d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 491
Score = 24.7 bits (53), Expect = 8.9
Identities = 20/84 (23%), Positives = 30/84 (35%), Gaps = 16/84 (19%)
Query: 54 EHRRLYRQLLFTSDKVIGDNISGVILFHETLYQKADDGTPFVELLKQRGIIPGIKVDKGV 113
E R L + L F + + +A +GT F E LK + + P ++
Sbjct: 286 EKRMLMKFLTFCVEYEEHPDEY-----------RAYEGTTFSEYLKTQKLTPNLQYFVLH 334
Query: 114 VPLMGSEDECTTQAQATVQALQRT 137
M SE TV L+ T
Sbjct: 335 SIAMTSETTSC-----TVDGLKAT 353
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.134 0.382
Gapped
Lambda K H
0.267 0.0552 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 673,887
Number of extensions: 29669
Number of successful extensions: 84
Number of sequences better than 10.0: 1
Number of HSP's gapped: 81
Number of HSP's successfully gapped: 18
Length of query: 183
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 103
Effective length of database: 1,309,196
Effective search space: 134847188
Effective search space used: 134847188
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 50 (23.4 bits)