BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12533
(567 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1NSY|A Chain A, Crystal Structure Of Nh3-dependent Nad+ Synthetase From
Bacillus Subtilis
pdb|1NSY|B Chain B, Crystal Structure Of Nh3-dependent Nad+ Synthetase From
Bacillus Subtilis
pdb|2NSY|A Chain A, Crystal Structure Of Nh3-Dependent Nad+ Synthetase From
Bacillus Subtilis In Complex With Nad-Adenylate
pdb|2NSY|B Chain B, Crystal Structure Of Nh3-Dependent Nad+ Synthetase From
Bacillus Subtilis In Complex With Nad-Adenylate
pdb|1EE1|A Chain A, Crystal Structure Of Nh3-Dependent Nad+ Synthetase From
Bacillus Subtilis Complexed With One Molecule Atp, Two
Molecules Deamido-Nad+ And One Mg2+ Ion
pdb|1EE1|B Chain B, Crystal Structure Of Nh3-Dependent Nad+ Synthetase From
Bacillus Subtilis Complexed With One Molecule Atp, Two
Molecules Deamido-Nad+ And One Mg2+ Ion
pdb|1FYD|A Chain A, Crystal Structure Of Nh3-Dependent Nad+ Synthetase From
Bacillus Subtilis Complexed With One Molecule Amp, One
Pyrophosphate Ion And One Mg2+ Ion
pdb|1FYD|B Chain B, Crystal Structure Of Nh3-Dependent Nad+ Synthetase From
Bacillus Subtilis Complexed With One Molecule Amp, One
Pyrophosphate Ion And One Mg2+ Ion
pdb|1IFX|A Chain A, Crystal Structure Of Nh3-Dependent Nad+ Synthetase From
Bacillus Subtilis Complexed With Two Molecules
Deamido-Nad
pdb|1IFX|B Chain B, Crystal Structure Of Nh3-Dependent Nad+ Synthetase From
Bacillus Subtilis Complexed With Two Molecules
Deamido-Nad
pdb|1IH8|A Chain A, Nh3-Dependent Nad+ Synthetase From Bacillus Subtilis
Complexed With Amp-Cpp And Mg2+ Ions.
pdb|1IH8|B Chain B, Nh3-Dependent Nad+ Synthetase From Bacillus Subtilis
Complexed With Amp-Cpp And Mg2+ Ions.
pdb|1KQP|A Chain A, Nh3-Dependent Nad+ Synthetase From Bacillus Subtilis At 1
A Resolution
pdb|1KQP|B Chain B, Nh3-Dependent Nad+ Synthetase From Bacillus Subtilis At 1
A Resolution
Length = 271
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 15/82 (18%)
Query: 104 LPIMGKDWAQNGVTRLFTKIKENGYKLLYLSARAIGQSRVTREYLQSVKQEDLTLPEGPM 163
L ++G D A VT FTK + G LL L+ Q R ++L PE
Sbjct: 152 LLVLGTDHAAEAVTGFFTKYGDGGADLLPLTGLTKRQGRTLL--------KELGAPERLY 203
Query: 164 LLNPTSLLNAFHTEVIEKKPQE 185
L PT+ +++++KPQ+
Sbjct: 204 LKEPTA-------DLLDEKPQQ 218
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 15/82 (18%)
Query: 379 LPIMGKDWAQNGVTRLFTKIKENGYKLLYLSARAIGQSRVTREYLQSVKQEDLTLPEGPM 438
L ++G D A VT FTK + G LL L+ Q R ++L PE
Sbjct: 152 LLVLGTDHAAEAVTGFFTKYGDGGADLLPLTGLTKRQGRTLL--------KELGAPERLY 203
Query: 439 LLNPTSLLNAFHTEVIEKKPQE 460
L PT+ +++++KPQ+
Sbjct: 204 LKEPTA-------DLLDEKPQQ 218
>pdb|2PZ8|A Chain A, Nad+ Synthetase From Bacillus Anthracis With Amp-Cpp And
Mg2+
pdb|2PZ8|B Chain B, Nad+ Synthetase From Bacillus Anthracis With Amp-Cpp And
Mg2+
pdb|2PZA|A Chain A, Nad+ Synthetase From Bacillus Anthracis With Amp + Ppi And
Mg2+
pdb|2PZA|B Chain B, Nad+ Synthetase From Bacillus Anthracis With Amp + Ppi And
Mg2+
pdb|2PZB|A Chain A, Nad+ Synthetase From Bacillus Anthracis
pdb|2PZB|B Chain B, Nad+ Synthetase From Bacillus Anthracis
pdb|2PZB|C Chain C, Nad+ Synthetase From Bacillus Anthracis
pdb|2PZB|D Chain D, Nad+ Synthetase From Bacillus Anthracis
Length = 284
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 29/61 (47%)
Query: 104 LPIMGKDWAQNGVTRLFTKIKENGYKLLYLSARAIGQSRVTREYLQSVKQEDLTLPEGPM 163
L ++G D A VT FTK + G LL L+ Q R + L + ++ L +P +
Sbjct: 153 LLVIGTDHAAEAVTGFFTKFGDGGADLLPLTGLTKRQGRALLQELGADERLYLKMPTADL 212
Query: 164 L 164
L
Sbjct: 213 L 213
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 29/61 (47%)
Query: 379 LPIMGKDWAQNGVTRLFTKIKENGYKLLYLSARAIGQSRVTREYLQSVKQEDLTLPEGPM 438
L ++G D A VT FTK + G LL L+ Q R + L + ++ L +P +
Sbjct: 153 LLVIGTDHAAEAVTGFFTKFGDGGADLLPLTGLTKRQGRALLQELGADERLYLKMPTADL 212
Query: 439 L 439
L
Sbjct: 213 L 213
>pdb|4EVS|A Chain A, Crystal Structure Of Abc Transporter From R. Palustris -
Solute Binding Protein (Rpa0985) In Complex With
4-Hydroxybenzoate
Length = 371
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 32/66 (48%)
Query: 104 LPIMGKDWAQNGVTRLFTKIKENGYKLLYLSARAIGQSRVTREYLQSVKQEDLTLPEGPM 163
L ++ K A+ G + +G +L+Y A G + + + +VK T P GP+
Sbjct: 268 LALLQKGGAKLGDVTXTSVAAYDGARLIYKXIEATGGKQDPEKAIAAVKDXKWTSPRGPV 327
Query: 164 LLNPTS 169
++PT+
Sbjct: 328 SIDPTT 333
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 32/66 (48%)
Query: 379 LPIMGKDWAQNGVTRLFTKIKENGYKLLYLSARAIGQSRVTREYLQSVKQEDLTLPEGPM 438
L ++ K A+ G + +G +L+Y A G + + + +VK T P GP+
Sbjct: 268 LALLQKGGAKLGDVTXTSVAAYDGARLIYKXIEATGGKQDPEKAIAAVKDXKWTSPRGPV 327
Query: 439 LLNPTS 444
++PT+
Sbjct: 328 SIDPTT 333
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,605,611
Number of Sequences: 62578
Number of extensions: 674252
Number of successful extensions: 1625
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1620
Number of HSP's gapped (non-prelim): 6
length of query: 567
length of database: 14,973,337
effective HSP length: 104
effective length of query: 463
effective length of database: 8,465,225
effective search space: 3919399175
effective search space used: 3919399175
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)