RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy12533
(567 letters)
>gnl|CDD|197870 smart00775, LNS2, This domain is found in Saccharomyces cerevisiae
protein SMP2, proteins with an N-terminal lipin domain
and phosphatidylinositol transfer proteins. SMP2 is
involved in plasmid maintenance and respiration. Lipin
proteins are involved in adipose tissue development and
insulin resistance.
Length = 157
Score = 269 bits (691), Expect = 1e-88
Identities = 102/157 (64%), Positives = 120/157 (76%)
Query: 85 IVISDIDGTITKSDVLGHVLPIMGKDWAQNGVTRLFTKIKENGYKLLYLSARAIGQSRVT 144
IVISDIDGTITKSDVLGHV+PI+GKDW GV +L+ I+ NGYK+LYL+AR IGQ+ T
Sbjct: 1 IVISDIDGTITKSDVLGHVVPIIGKDWTHPGVAKLYRDIQNNGYKILYLTARPIGQADRT 60
Query: 145 REYLQSVKQEDLTLPEGPMLLNPTSLLNAFHTEVIEKKPQEFKISCLRDIMALFPPNTQP 204
R YL +KQ+ LP GP+LL+P L A H EVI KKP+ FKI+CLRDI LFPP P
Sbjct: 61 RSYLSQIKQDGHNLPHGPVLLSPDRLFAALHREVISKKPEVFKIACLRDIKNLFPPQGNP 120
Query: 205 FYAGYGNKVNDVWSYQAVGIPLSRIFTINSRGEVKHE 241
FYAG+GN++ DV SY AVGIP SRIFTIN +GEV E
Sbjct: 121 FYAGFGNRITDVISYSAVGIPPSRIFTINPKGEVHQE 157
Score = 269 bits (691), Expect = 1e-88
Identities = 102/157 (64%), Positives = 120/157 (76%)
Query: 360 IVISDIDGTITKSDVLGHVLPIMGKDWAQNGVTRLFTKIKENGYKLLYLSARAIGQSRVT 419
IVISDIDGTITKSDVLGHV+PI+GKDW GV +L+ I+ NGYK+LYL+AR IGQ+ T
Sbjct: 1 IVISDIDGTITKSDVLGHVVPIIGKDWTHPGVAKLYRDIQNNGYKILYLTARPIGQADRT 60
Query: 420 REYLQSVKQEDLTLPEGPMLLNPTSLLNAFHTEVIEKKPQEFKISCLRDIMALFPPNTQP 479
R YL +KQ+ LP GP+LL+P L A H EVI KKP+ FKI+CLRDI LFPP P
Sbjct: 61 RSYLSQIKQDGHNLPHGPVLLSPDRLFAALHREVISKKPEVFKIACLRDIKNLFPPQGNP 120
Query: 480 FYAGYGNKVNDVWSYQAVGIPLSRIFTINSRGEVKHE 516
FYAG+GN++ DV SY AVGIP SRIFTIN +GEV E
Sbjct: 121 FYAGFGNRITDVISYSAVGIPPSRIFTINPKGEVHQE 157
>gnl|CDD|149348 pfam08235, LNS2, LNS2 (Lipin/Ned1/Smp2). This domain is found in
Saccharomyces cerevisiae protein SMP2, proteins with an
N-terminal lipin domain (Pfam: PF04571) and
phosphatidylinositol transfer proteins. SMP2 (also known
as PAH1) is involved in plasmid maintenance and
respiration, and has been identified as a Mg2+-dependent
phosphatidate phosphatase (EC:3.1.3.4) that contains a
haloacid dehalogenase (HAD)-like domain. Lipin proteins
are involved in adipose tissue development and insulin
resistance.
Length = 156
Score = 253 bits (649), Expect = 2e-82
Identities = 93/157 (59%), Positives = 113/157 (71%), Gaps = 1/157 (0%)
Query: 85 IVISDIDGTITKSDVLGHVLPIMGKDWAQNGVTRLFTKIKENGYKLLYLSARAIGQSRVT 144
+VISDIDGTIT SD LGH+L IMGKDW GV L KI+ENGY ++YL+AR GQ+ T
Sbjct: 1 VVISDIDGTITASDALGHILSIMGKDWVHAGVVDLVRKIQENGYLIIYLTARPDGQADRT 60
Query: 145 REYLQSVKQEDLTLPEGPMLLNPTSLLNAFHTEVIEKKPQEFKISCLRDIMALFPPNTQP 204
R YL KQ+ LP GP++L+P L A H EVI KKP FKI+CLRDI LF PN P
Sbjct: 61 RAYLSQHKQDGYNLPHGPVILSPDRLFAALHREVILKKPLVFKIACLRDIRQLF-PNRNP 119
Query: 205 FYAGYGNKVNDVWSYQAVGIPLSRIFTINSRGEVKHE 241
FYAG+GN++ DV Y++VG+P SRIFT+N +GEV E
Sbjct: 120 FYAGFGNRIKDVIVYRSVGVPPSRIFTVNPKGEVHQE 156
Score = 253 bits (649), Expect = 2e-82
Identities = 93/157 (59%), Positives = 113/157 (71%), Gaps = 1/157 (0%)
Query: 360 IVISDIDGTITKSDVLGHVLPIMGKDWAQNGVTRLFTKIKENGYKLLYLSARAIGQSRVT 419
+VISDIDGTIT SD LGH+L IMGKDW GV L KI+ENGY ++YL+AR GQ+ T
Sbjct: 1 VVISDIDGTITASDALGHILSIMGKDWVHAGVVDLVRKIQENGYLIIYLTARPDGQADRT 60
Query: 420 REYLQSVKQEDLTLPEGPMLLNPTSLLNAFHTEVIEKKPQEFKISCLRDIMALFPPNTQP 479
R YL KQ+ LP GP++L+P L A H EVI KKP FKI+CLRDI LF PN P
Sbjct: 61 RAYLSQHKQDGYNLPHGPVILSPDRLFAALHREVILKKPLVFKIACLRDIRQLF-PNRNP 119
Query: 480 FYAGYGNKVNDVWSYQAVGIPLSRIFTINSRGEVKHE 516
FYAG+GN++ DV Y++VG+P SRIFT+N +GEV E
Sbjct: 120 FYAGFGNRIKDVIVYRSVGVPPSRIFTVNPKGEVHQE 156
>gnl|CDD|227415 COG5083, SMP2, Uncharacterized protein involved in plasmid
maintenance [General function prediction only].
Length = 580
Score = 253 bits (647), Expect = 1e-76
Identities = 110/227 (48%), Positives = 152/227 (66%), Gaps = 5/227 (2%)
Query: 37 KTLRLTSEQIAGLELRSGMNEVEFSVTTAYQGTTRCKCYLFKWRWNDKIVISDIDGTITK 96
T++L S+Q+ L L+ G N ++F V G Y+F WR N KIV+SDIDGTITK
Sbjct: 332 GTIKLNSDQLRNLNLKYGKNLLKFYVE---GGKAIATMYIFVWRNNKKIVVSDIDGTITK 388
Query: 97 SDVLGHVLPIMGKDWAQNGVTRLFTKIKENGYKLLYLSARAIGQSRVTREYLQSVKQEDL 156
SD LGHV ++GKDW NGV +L+T I NGYK+ YL++R+ GQ+ TR YL++++Q
Sbjct: 389 SDALGHVKQMIGKDWTHNGVAKLYTDIDRNGYKIKYLTSRSYGQADSTRSYLRNIEQNGY 448
Query: 157 TLPEGPMLLNPTSLLNAFHTEVIEKKPQEFKISCLRDIMALFPPNTQPFYAGYGNKVNDV 216
LP+GP++L+P + A + E+I +KP+ FKI+ L D+ +LF PFYAG+GN++ DV
Sbjct: 449 KLPDGPVILSPDRTMAALYRELILRKPEVFKIAYLNDLKSLF-IEFDPFYAGFGNRITDV 507
Query: 217 WSYQAVGIPLSRIFTINSRGEVKHEMTQT-FQSTYSNMSYLVDQMFP 262
SY VGIP SRIFTIN GEV E+ ++S+Y M+ LVD FP
Sbjct: 508 ISYSNVGIPKSRIFTINKNGEVHGELLIVSYRSSYKQMNELVDHFFP 554
Score = 253 bits (647), Expect = 1e-76
Identities = 110/227 (48%), Positives = 152/227 (66%), Gaps = 5/227 (2%)
Query: 312 KTLRLTSEQIAGLELRSGMNEVEFSVTTAYQGTTRCKCYLFKWRWNDKIVISDIDGTITK 371
T++L S+Q+ L L+ G N ++F V G Y+F WR N KIV+SDIDGTITK
Sbjct: 332 GTIKLNSDQLRNLNLKYGKNLLKFYVE---GGKAIATMYIFVWRNNKKIVVSDIDGTITK 388
Query: 372 SDVLGHVLPIMGKDWAQNGVTRLFTKIKENGYKLLYLSARAIGQSRVTREYLQSVKQEDL 431
SD LGHV ++GKDW NGV +L+T I NGYK+ YL++R+ GQ+ TR YL++++Q
Sbjct: 389 SDALGHVKQMIGKDWTHNGVAKLYTDIDRNGYKIKYLTSRSYGQADSTRSYLRNIEQNGY 448
Query: 432 TLPEGPMLLNPTSLLNAFHTEVIEKKPQEFKISCLRDIMALFPPNTQPFYAGYGNKVNDV 491
LP+GP++L+P + A + E+I +KP+ FKI+ L D+ +LF PFYAG+GN++ DV
Sbjct: 449 KLPDGPVILSPDRTMAALYRELILRKPEVFKIAYLNDLKSLF-IEFDPFYAGFGNRITDV 507
Query: 492 WSYQAVGIPLSRIFTINSRGEVKHEMTQT-FQSTYSNMSYLVDQMFP 537
SY VGIP SRIFTIN GEV E+ ++S+Y M+ LVD FP
Sbjct: 508 ISYSNVGIPKSRIFTINKNGEVHGELLIVSYRSSYKQMNELVDHFFP 554
>gnl|CDD|233517 TIGR01662, HAD-SF-IIIA, HAD-superfamily hydrolase, subfamily IIIA.
This subfamily falls within the Haloacid Dehalogenase
(HAD) superfamily of aspartate-nucleophile hydrolases.
The Class III subfamilies are characterized by the lack
of any domains located between either between the first
and second conserved catalytic motifs (as in the Class I
subfamilies, TIGR01493, TIGR01509, TIGR01488 and
TIGR01494) or between the second and third conserved
catalytic motifs (as in the Class II subfamilies,
TIGR01460 and TIGR01484) of the superfamily domain. The
IIIA subfamily contains five major clades:
histidinol-phosphatase (TIGR01261) and
histidinol-phosphatase-related protein (TIGR00213) which
together form a subfamily (TIGR01656), DNA
3'-phosphatase (TIGR01663, TIGR01664), YqeG (TIGR01668)
and YrbI (TIGR01670). In the case of histidinol
phosphatase and PNK-3'-phosphatase, this model
represents a domain of a bifunctional system. In the
histidinol phosphatase HisB, a C-terminal domain is an
imidazoleglycerol-phosphate dehydratase which catalyzes
a related step in histidine biosynthesis. In
PNK-3'-phosphatase, N- and C-terminal domains constitute
the polynucleotide kinase and DNA-binding components of
the enzyme [Unknown function, Enzymes of unknown
specificity].
Length = 132
Score = 37.4 bits (87), Expect = 0.004
Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 11/80 (13%)
Query: 84 KIVISDIDGTITKSDVLGHVLPIMGKDWAQ--NGVTRLFTKIKENGYKLLYLSARAIGQS 141
K V+ D+DGT+T V + +D V ++KE GYK++ ++ QS
Sbjct: 1 KGVVLDLDGTLTDD-----VPYVDDEDERILYPEVPDALAELKEAGYKVVIVT----NQS 51
Query: 142 RVTREYLQSVKQEDLTLPEG 161
+ R S + G
Sbjct: 52 GIGRGKFSSGRVARRLEELG 71
Score = 37.4 bits (87), Expect = 0.004
Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 11/80 (13%)
Query: 359 KIVISDIDGTITKSDVLGHVLPIMGKDWAQ--NGVTRLFTKIKENGYKLLYLSARAIGQS 416
K V+ D+DGT+T V + +D V ++KE GYK++ ++ QS
Sbjct: 1 KGVVLDLDGTLTDD-----VPYVDDEDERILYPEVPDALAELKEAGYKVVIVT----NQS 51
Query: 417 RVTREYLQSVKQEDLTLPEG 436
+ R S + G
Sbjct: 52 GIGRGKFSSGRVARRLEELG 71
>gnl|CDD|119389 cd01427, HAD_like, Haloacid dehalogenase-like hydrolases. The
haloacid dehalogenase-like (HAD) superfamily includes
L-2-haloacid dehalogenase, epoxide hydrolase,
phosphoserine phosphatase, phosphomannomutase,
phosphoglycolate phosphatase, P-type ATPase, and many
others, all of which use a nucleophilic aspartate in
their phosphoryl transfer reaction. All members possess
a highly conserved alpha/beta core domain, and many also
possess a small cap domain, the fold and function of
which is variable. Members of this superfamily are
sometimes referred to as belonging to the DDDD
superfamily of phosphohydrolases.
Length = 139
Score = 36.6 bits (85), Expect = 0.009
Identities = 30/145 (20%), Positives = 52/145 (35%), Gaps = 32/145 (22%)
Query: 85 IVISDIDGTITKSD------VLGHVLPIMGKDWAQNGVTRLFTKIKENGYKLLYLSARAI 138
V+ D+DGT+ S+ + P GV ++KE G KL +
Sbjct: 1 AVLFDLDGTLLDSEPGIAEIEELELYP---------GVKEALKELKEKGIKLALAT---- 47
Query: 139 GQSRVTREYLQSVKQEDLTLPEGPML-------LNPTSLLNAFHTEVIEKKPQEFKISCL 191
+SR RE L+ +++ L P++ P L KP K+
Sbjct: 48 NKSR--REVLELLEELGLDDYFDPVITSNGAAIYYPKEGLFLGGGPFDIGKPNPDKLLAA 105
Query: 192 RDIMALFPPNTQPFYAGYGNKVNDV 216
++ + P G+ +ND+
Sbjct: 106 LKLLGVDPEEV----LMVGDSLNDI 126
Score = 36.6 bits (85), Expect = 0.009
Identities = 30/145 (20%), Positives = 52/145 (35%), Gaps = 32/145 (22%)
Query: 360 IVISDIDGTITKSD------VLGHVLPIMGKDWAQNGVTRLFTKIKENGYKLLYLSARAI 413
V+ D+DGT+ S+ + P GV ++KE G KL +
Sbjct: 1 AVLFDLDGTLLDSEPGIAEIEELELYP---------GVKEALKELKEKGIKLALAT---- 47
Query: 414 GQSRVTREYLQSVKQEDLTLPEGPML-------LNPTSLLNAFHTEVIEKKPQEFKISCL 466
+SR RE L+ +++ L P++ P L KP K+
Sbjct: 48 NKSR--REVLELLEELGLDDYFDPVITSNGAAIYYPKEGLFLGGGPFDIGKPNPDKLLAA 105
Query: 467 RDIMALFPPNTQPFYAGYGNKVNDV 491
++ + P G+ +ND+
Sbjct: 106 LKLLGVDPEEV----LMVGDSLNDI 126
>gnl|CDD|223635 COG0561, Cof, Predicted hydrolases of the HAD superfamily [General
function prediction only].
Length = 264
Score = 33.2 bits (76), Expect = 0.26
Identities = 30/193 (15%), Positives = 66/193 (34%), Gaps = 24/193 (12%)
Query: 84 KIVISDIDGTITKSDVLGHVLPIMGKDWAQNGVTRLFTKIKENGYKLLYLSARAIGQSRV 143
K++ D+DGT+ S+ + P +++E G K++ + R
Sbjct: 4 KLLAFDLDGTLLDSN--KTISPE---------TKEALARLREKGVKVVLATGR---PLPD 49
Query: 144 TREYLQSVKQEDLTLPE-GPMLLNPTSLLNAFH---------TEVIEKKPQEFKISCLRD 193
L+ + + + G ++ N LL E++E + D
Sbjct: 50 VLSILEELGLDGPLITFNGALIYNGGELLFQKPLSREDVEELLELLEDFQGIALVLYTDD 109
Query: 194 IMALFPPNTQPFYAGYGNKVNDVWSYQAVGIPLSRIFTINSRGEVKHEMTQTFQSTYSNM 253
+ L A G +A + ++I ++ E+ E+ + + + ++
Sbjct: 110 GIYLTKKRGTFAEARIGFANLSPVGREAAELEDNKIIALDKDHEILEELVEALRKRFPDL 169
Query: 254 SYLVDQMFPSSLE 266
V P SL+
Sbjct: 170 GLTVSSSGPISLD 182
Score = 33.2 bits (76), Expect = 0.26
Identities = 30/193 (15%), Positives = 66/193 (34%), Gaps = 24/193 (12%)
Query: 359 KIVISDIDGTITKSDVLGHVLPIMGKDWAQNGVTRLFTKIKENGYKLLYLSARAIGQSRV 418
K++ D+DGT+ S+ + P +++E G K++ + R
Sbjct: 4 KLLAFDLDGTLLDSN--KTISPE---------TKEALARLREKGVKVVLATGR---PLPD 49
Query: 419 TREYLQSVKQEDLTLPE-GPMLLNPTSLLNAFH---------TEVIEKKPQEFKISCLRD 468
L+ + + + G ++ N LL E++E + D
Sbjct: 50 VLSILEELGLDGPLITFNGALIYNGGELLFQKPLSREDVEELLELLEDFQGIALVLYTDD 109
Query: 469 IMALFPPNTQPFYAGYGNKVNDVWSYQAVGIPLSRIFTINSRGEVKHEMTQTFQSTYSNM 528
+ L A G +A + ++I ++ E+ E+ + + + ++
Sbjct: 110 GIYLTKKRGTFAEARIGFANLSPVGREAAELEDNKIIALDKDHEILEELVEALRKRFPDL 169
Query: 529 SYLVDQMFPSSLE 541
V P SL+
Sbjct: 170 GLTVSSSGPISLD 182
>gnl|CDD|227187 COG4850, COG4850, Uncharacterized conserved protein [Function
unknown].
Length = 373
Score = 32.5 bits (74), Expect = 0.54
Identities = 25/123 (20%), Positives = 43/123 (34%), Gaps = 19/123 (15%)
Query: 86 VISDIDGTITKSDVLGHVLPIMGKDWAQN--------GVTRLF-TKIKENGYKLLYLSAR 136
+ISDID T+ + V G+ + GV+ + + Y+S
Sbjct: 164 IISDIDDTVKVTGVTE-GPRKAGRSLLLHALTRQVIPGVSAWYRALTNLGDAPVFYVSNS 222
Query: 137 AIGQSRVTREYLQSVKQEDLTLPEGPMLLNPTSLLNAFHTEVIEKKPQEFKISCLRDIMA 196
+E++ + P GP+LL +IE K LR+I+
Sbjct: 223 PWQLFPTLQEFITNRN-----FPYGPLLLRR---WGGVLDNIIESG-AARKGQSLRNILR 273
Query: 197 LFP 199
+P
Sbjct: 274 RYP 276
Score = 32.5 bits (74), Expect = 0.54
Identities = 25/123 (20%), Positives = 43/123 (34%), Gaps = 19/123 (15%)
Query: 361 VISDIDGTITKSDVLGHVLPIMGKDWAQN--------GVTRLF-TKIKENGYKLLYLSAR 411
+ISDID T+ + V G+ + GV+ + + Y+S
Sbjct: 164 IISDIDDTVKVTGVTE-GPRKAGRSLLLHALTRQVIPGVSAWYRALTNLGDAPVFYVSNS 222
Query: 412 AIGQSRVTREYLQSVKQEDLTLPEGPMLLNPTSLLNAFHTEVIEKKPQEFKISCLRDIMA 471
+E++ + P GP+LL +IE K LR+I+
Sbjct: 223 PWQLFPTLQEFITNRN-----FPYGPLLLRR---WGGVLDNIIESG-AARKGQSLRNILR 273
Query: 472 LFP 474
+P
Sbjct: 274 RYP 276
>gnl|CDD|222856 PHA02530, pseT, polynucleotide kinase; Provisional.
Length = 300
Score = 30.8 bits (70), Expect = 1.6
Identities = 21/72 (29%), Positives = 28/72 (38%), Gaps = 13/72 (18%)
Query: 84 KIVISDIDGTITKSDVLGHVLPIMGKDWAQNG-------VTRLFTKIKENGYKLLYLSAR 136
K VI DIDGT+ K DW + V L K GY+++ +S R
Sbjct: 159 KAVIFDIDGTLAKMGGRSPY------DWTKVKEDKPNPMVVELVKMYKAAGYEIIVVSGR 212
Query: 137 AIGQSRVTREYL 148
T E+L
Sbjct: 213 DGVCEEDTVEWL 224
Score = 30.8 bits (70), Expect = 1.6
Identities = 21/72 (29%), Positives = 28/72 (38%), Gaps = 13/72 (18%)
Query: 359 KIVISDIDGTITKSDVLGHVLPIMGKDWAQNG-------VTRLFTKIKENGYKLLYLSAR 411
K VI DIDGT+ K DW + V L K GY+++ +S R
Sbjct: 159 KAVIFDIDGTLAKMGGRSPY------DWTKVKEDKPNPMVVELVKMYKAAGYEIIVVSGR 212
Query: 412 AIGQSRVTREYL 423
T E+L
Sbjct: 213 DGVCEEDTVEWL 224
>gnl|CDD|205524 pfam13344, Hydrolase_6, Haloacid dehalogenase-like hydrolase. This
family is part of the HAD superfamily.
Length = 101
Score = 28.5 bits (65), Expect = 2.9
Identities = 6/49 (12%), Positives = 18/49 (36%), Gaps = 12/49 (24%)
Query: 86 VISDIDGTITKSDVLGHVLPIMGKDWAQNGVTRLFTKIKENGYKLLYLS 134
+ D+DG + + +P G ++ G +++++
Sbjct: 1 FLFDVDGVLWRGG---EPIP---------GAAEALNALRAAGKPVVFVT 37
Score = 28.5 bits (65), Expect = 2.9
Identities = 6/49 (12%), Positives = 18/49 (36%), Gaps = 12/49 (24%)
Query: 361 VISDIDGTITKSDVLGHVLPIMGKDWAQNGVTRLFTKIKENGYKLLYLS 409
+ D+DG + + +P G ++ G +++++
Sbjct: 1 FLFDVDGVLWRGG---EPIP---------GAAEALNALRAAGKPVVFVT 37
>gnl|CDD|217719 pfam03767, Acid_phosphat_B, HAD superfamily, subfamily IIIB (Acid
phosphatase). This family proteins includes acid
phosphatases and a number of vegetative storage
proteins.
Length = 213
Score = 28.9 bits (65), Expect = 5.3
Identities = 10/41 (24%), Positives = 17/41 (41%)
Query: 115 GVTRLFTKIKENGYKLLYLSARAIGQSRVTREYLQSVKQED 155
G L+ + E G K+ ++S R+ T E L+
Sbjct: 107 GALELYNYLVELGVKIFFVSGRSEDLRAATVENLKKAGFHG 147
Score = 28.9 bits (65), Expect = 5.3
Identities = 10/41 (24%), Positives = 17/41 (41%)
Query: 390 GVTRLFTKIKENGYKLLYLSARAIGQSRVTREYLQSVKQED 430
G L+ + E G K+ ++S R+ T E L+
Sbjct: 107 GALELYNYLVELGVKIFFVSGRSEDLRAATVENLKKAGFHG 147
>gnl|CDD|233435 TIGR01488, HAD-SF-IB, Haloacid Dehalogenase superfamily, subfamily
IB, phosphoserine phosphatase-like. This model
represents a subfamily of the Haloacid Dehalogenase
superfamily of aspartate-nucleophile hydrolases.
Subfamily IA, B, C and D are distinguished from the rest
of the superfamily by the presence of a variable domain
between the first and second conserved catalytic motifs.
In subfamilies IA and IB, this domain consists of an
alpha-helical bundle. It was necessary to model these
two subfamilies separately, breaking them at a an
apparent phylogenetic bifurcation, so that the resulting
model(s) are not so broadly defined that members of
subfamily III (which lack the variable domain) are
included. Subfamily IA includes the enzyme phosphoserine
phosphatase (TIGR00338) as well as three hypothetical
equivalogs. Many members of these hypothetical
equivalogs have been annotated as PSPase-like or
PSPase-family proteins. In particular, the hypothetical
equivalog which appears to be most closely related to
PSPase contains only Archaea (while TIGR00338 contains
only eukaryotes and bacteria) of which some are
annotated as PSPases. Although this is a reasonable
conjecture, none of these sequences has sufficient
evidence for this assignment. If such should be found,
this model should be retired while the PSPase model
should be broadened to include these sequences [Unknown
function, Enzymes of unknown specificity].
Length = 177
Score = 28.1 bits (63), Expect = 9.7
Identities = 13/71 (18%), Positives = 26/71 (36%), Gaps = 9/71 (12%)
Query: 85 IVISDIDGTITK----SDVLGHVLPIMGK-----DWAQNGVTRLFTKIKENGYKLLYLSA 135
+ I D DGT+T+ D+L +L + A +G + L +
Sbjct: 1 LAIFDFDGTLTRQDSLIDLLAKLLGTNDEVIELTRLAPSGRISFEDALGRRLALLHRSRS 60
Query: 136 RAIGQSRVTRE 146
+ + + R+
Sbjct: 61 EEVAKEFLARQ 71
Score = 28.1 bits (63), Expect = 9.7
Identities = 13/71 (18%), Positives = 26/71 (36%), Gaps = 9/71 (12%)
Query: 360 IVISDIDGTITK----SDVLGHVLPIMGK-----DWAQNGVTRLFTKIKENGYKLLYLSA 410
+ I D DGT+T+ D+L +L + A +G + L +
Sbjct: 1 LAIFDFDGTLTRQDSLIDLLAKLLGTNDEVIELTRLAPSGRISFEDALGRRLALLHRSRS 60
Query: 411 RAIGQSRVTRE 421
+ + + R+
Sbjct: 61 EEVAKEFLARQ 71
>gnl|CDD|219952 pfam08645, PNK3P, Polynucleotide kinase 3 phosphatase.
Polynucleotide kinase 3 phosphatases play a role in the
repair of single breaks in DNA induced by DNA-damaging
agents such as gamma radiation and camptothecin.
Length = 158
Score = 28.0 bits (63), Expect = 9.8
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 5/54 (9%)
Query: 84 KIVISDIDGTITKSDVLGHVLPIMGKDW---AQNGVTRLFTKIKENGYKLLYLS 134
KI D+DGT+ K+ G V P DW + +L K+ E+GYK++ +
Sbjct: 1 KIAAFDLDGTLIKTKS-GKVFPKDADDWKWLYPSVPEKLK-KLHEDGYKIVIFT 52
Score = 28.0 bits (63), Expect = 9.8
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 5/54 (9%)
Query: 359 KIVISDIDGTITKSDVLGHVLPIMGKDW---AQNGVTRLFTKIKENGYKLLYLS 409
KI D+DGT+ K+ G V P DW + +L K+ E+GYK++ +
Sbjct: 1 KIAAFDLDGTLIKTKS-GKVFPKDADDWKWLYPSVPEKLK-KLHEDGYKIVIFT 52
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.132 0.388
Gapped
Lambda K H
0.267 0.0781 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 28,307,393
Number of extensions: 2703516
Number of successful extensions: 2135
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2121
Number of HSP's successfully gapped: 37
Length of query: 567
Length of database: 10,937,602
Length adjustment: 102
Effective length of query: 465
Effective length of database: 6,413,494
Effective search space: 2982274710
Effective search space used: 2982274710
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (27.6 bits)