RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12533
(567 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 62.2 bits (150), Expect = 3e-10
Identities = 93/570 (16%), Positives = 167/570 (29%), Gaps = 155/570 (27%)
Query: 87 ISDIDGTITKSDVLGHVLPIMGKDWAQNGVTRLFTKIKENG---------------YKLL 131
+ D+ +I + + H I+ A +G RLF + YK L
Sbjct: 38 VQDMPKSILSKEEIDH---IIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFL 94
Query: 132 Y--LSARAIGQSRVTREYLQSVKQEDLTLPEGPMLLNPTSLLNAFHTEVIEKKPQEFKIS 189
+ S +TR Y++ + L N + ++ ++ +
Sbjct: 95 MSPIKTEQRQPSMMTRMYIEQRDR----------LYNDNQVFAKYNVSRLQPYLK----- 139
Query: 190 CLRDIMALFPPNTQPFY-----AGYGNK---VNDVWSYQAVGIPLS-RIFTIN----SRG 236
LR AL G G K DV V + +IF +N +
Sbjct: 140 -LRQ--ALLELRPAKNVLIDGVLGSG-KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSP 195
Query: 237 EVKHEMTQTFQSTYSNMSYLVDQMFPSSLEGTSSEDFTTMAEILNQIPEITDQAVSSDS- 295
E EM Q + Y +D + S + +S+ I ++ + +
Sbjct: 196 ETVLEMLQ-------KLLYQIDPNWTSRSDHSSNIKLRI-HSIQAELRRLLKSKPYENCL 247
Query: 296 ---DEDMIRNKRGLNA-NHK-KTLRLTSEQIAGLELRSGMNEVEFSVTTAYQGTTR--CK 348
++N + NA N K L LT+ + S S+ T K
Sbjct: 248 LVLLN--VQNAKAWNAFNLSCKIL-LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK 304
Query: 349 CYLFKWRWNDK------------IVISDIDGTITKSDVLGHVLPIMGKDWAQNGVTRLFT 396
L K+ +S I + +W +L T
Sbjct: 305 SLLLKYLDCRPQDLPREVLTTNPRRLSII-AESIRDG------LATWDNWKHVNCDKL-T 356
Query: 397 KIKENGYKLLYLSARAIGQSRVTREYLQ--SVKQEDLTLPEGPMLL--------NPTSLL 446
I E+ +L + R+ SV +P + L + ++
Sbjct: 357 TIIESSLNVL--------EPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVV 408
Query: 447 NAFHTE-VIEKKPQEFKISC----------LRDIMAL-------------FPPN--TQPF 480
N H ++EK+P+E IS L + AL F + P+
Sbjct: 409 NKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPY 468
Query: 481 YAGYGNKVNDVWSYQAVGIPLSRIFTINSRGEVKHEMTQTFQSTYSNMSYLVDQM----F 536
Y Y +G L I E F+ + + +L ++
Sbjct: 469 LDQY--------FYSHIGHHLKNI--------EHPERMTLFRMVFLDFRFLEQKIRHDST 512
Query: 537 PSSLEGTSSEDFSQFVYWREPICETLPEDT 566
+ G+ Q +++ IC+ P+
Sbjct: 513 AWNASGSILNTLQQLKFYKPYICDNDPKYE 542
Score = 62.2 bits (150), Expect = 4e-10
Identities = 73/499 (14%), Positives = 145/499 (29%), Gaps = 130/499 (26%)
Query: 70 TRCKCY------LFKWRWNDKIVISDIDGTITKSDVLGHVLPIMGKDWAQNGVTRLFTKI 123
+R + Y L + R ++I DG VLG GK W V +
Sbjct: 132 SRLQPYLKLRQALLELRPAKNVLI---DG------VLG-----SGKTWVALDVCLSYKVQ 177
Query: 124 KENGYKLLYLSARAIGQSRVTREYLQS----VKQEDLTLPEGP---------------ML 164
+ +K+ +L+ + E LQ + + + L
Sbjct: 178 CKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL 237
Query: 165 L----NPTSLL---NAFHTEVIEKKPQEFKISC--L---RDI------------------ 194
L LL N + + F +SC L R
Sbjct: 238 LKSKPYENCLLVLLNVQNAKAWNA----FNLSCKILLTTRFKQVTDFLSAATTTHISLDH 293
Query: 195 --MALFPPNTQPFYAGY-GNKVNDVWSYQAVGI-PLSRIFTINSRGEVKHEMTQTFQSTY 250
M L P + Y + D+ + + P ++ E + T+ +
Sbjct: 294 HSMTLTPDEVKSLLLKYLDCRPQDL-PREVLTTNPR----RLSIIAESIRDGLATWD-NW 347
Query: 251 SNMSYL-VDQMFPSSLEGTSSED----FTTMAEILN---QIPEIT-----DQAVSSDSDE 297
+++ + + SSL + F ++ + IP I + SD
Sbjct: 348 KHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS-VFPPSAHIPTILLSLIWFDVIKSDVMV 406
Query: 298 DM--IRNKRGLNANHKK-TLRLTSEQIAGLELRSGMNEVEFSVTTAYQGTTRCKCYLFKW 354
+ + + K+ T+ + S + + S+ Y +
Sbjct: 407 VVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYN-IPKTFD----- 460
Query: 355 RWNDKIVISDIDGTITKSDVLGHVLPIMGKDWAQNGVTRLFT-------KIKENGYKLLY 407
+D ++ +D +GH L + +F KI+ +
Sbjct: 461 --SDDLIPPYLDQYFYSH--IGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNA 516
Query: 408 LSARA--IGQSRVTREYLQSVKQEDLTLPEGPMLLNPTSLLNAFHTEVIEKKPQEFKISC 465
+ + Q + + Y+ + P+ L+N ++L+ IE+ K +
Sbjct: 517 SGSILNTLQQLKFYKPYIC--DND----PKYERLVN--AILDFLPK--IEENLICSKYTD 566
Query: 466 LRDIMALFPPNTQPFYAGY 484
L I AL + F +
Sbjct: 567 LLRI-ALMAEDEAIFEEAH 584
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 39.3 bits (91), Expect = 0.004
Identities = 29/157 (18%), Positives = 49/157 (31%), Gaps = 43/157 (27%)
Query: 209 YGN--KVNDVW------SYQAVGIPLSRIFTINSRGEVKHEMTQTFQST---YSNMSY-- 255
Y DVW G + I N H + + YS M +
Sbjct: 1636 YKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFET 1695
Query: 256 ------LVDQMFPSSLEGTSSEDFTTMAEILNQIPEITDQ----AVSSDSDEDMIRNKRG 305
+++F E ++S F + +L+ + T Q + + ED+ +G
Sbjct: 1696 IVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSA-TQFT-QPALTLMEKAAFEDL--KSKG 1751
Query: 306 LNANHKKTLRLTSEQIAGLELRSGMNEVEFS--VTTA 340
L T AG L G E++ + A
Sbjct: 1752 L-IPADATF-------AGHSL--G----EYAALASLA 1774
Score = 37.7 bits (87), Expect = 0.011
Identities = 41/289 (14%), Positives = 78/289 (26%), Gaps = 127/289 (43%)
Query: 107 MGKD-----------WAQ---------------------NGVTRLFT-----KIKENGYK 129
MG D W + +T F +I+EN
Sbjct: 1631 MGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSA 1690
Query: 130 LLYLSARAIGQSRVTREYLQSVKQEDLTLPEGPMLLNPTSLLNAFHTEVIEKKPQEFKIS 189
+++ + T + + + + + + LL+A T+
Sbjct: 1691 MIF--ETIVDGKLKTEKIFKEINEHSTSY----TFRSEKGLLSA--TQ------------ 1730
Query: 190 CLRDIMALFPPNTQP--F---YAGY------GNKVNDVW----S---YQA-VGIPLSRIF 230
TQP A + G D S Y A + + +
Sbjct: 1731 -----------FTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASL--ADVM 1777
Query: 231 TINS-------RGEVKHEMTQTFQSTYSNMSYLVDQMF---PSSLEGTSSEDFTTMAEIL 280
+I S RG + SN M P + + S++ + ++
Sbjct: 1778 SIESLVEVVFYRGMTMQVAVPRDELGRSNYG-----MIAINPGRVAASFSQE--ALQYVV 1830
Query: 281 NQIPEITDQAVSSDSDEDMIRNKRGLNANHKKTLRLTSEQ--IAGLELR 327
++ + T V I N+ + ++Q AG +LR
Sbjct: 1831 ERVGKRTGWLVE-------I-------VNYN----VENQQYVAAG-DLR 1860
Score = 34.3 bits (78), Expect = 0.14
Identities = 35/251 (13%), Positives = 65/251 (25%), Gaps = 110/251 (43%)
Query: 382 MGKD-----------WAQ---------------------NGVTRLFT-----KIKENGYK 404
MG D W + +T F +I+EN
Sbjct: 1631 MGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSA 1690
Query: 405 LLYLSARAIGQSRVTREYLQSVKQEDLTLPEGPMLLNPTSLLNAFHTEVIEKKPQEFKIS 464
+++ + T + + + + + + LL+A T+
Sbjct: 1691 MIF--ETIVDGKLKTEKIFKEINEHSTSY----TFRSEKGLLSA--TQ------------ 1730
Query: 465 CLRDIMALFPPNTQP--F---YAGY------GNKVNDVW----S---YQA-VGIPLSRIF 505
TQP A + G D S Y A + + +
Sbjct: 1731 -----------FTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASL--ADVM 1777
Query: 506 TINS-------RGEVKHEMTQTFQSTYSNMSYLVDQMF---PSSLEGTSSEDFSQFVYWR 555
+I S RG + SN M P + + S++ Q+
Sbjct: 1778 SIESLVEVVFYRGMTMQVAVPRDELGRSNYG-----MIAINPGRVAASFSQEALQY---- 1828
Query: 556 EPICETLPEDT 566
+ E + + T
Sbjct: 1829 --VVERVGKRT 1837
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.8 bits (71), Expect = 0.28
Identities = 8/28 (28%), Positives = 13/28 (46%), Gaps = 4/28 (14%)
Query: 180 EKKPQEFKISCLRDIMALFPPNTQPFYA 207
EK Q K L+ + L+ ++ P A
Sbjct: 18 EK--QALKK--LQASLKLYADDSAPALA 41
Score = 31.8 bits (71), Expect = 0.28
Identities = 8/28 (28%), Positives = 13/28 (46%), Gaps = 4/28 (14%)
Query: 455 EKKPQEFKISCLRDIMALFPPNTQPFYA 482
EK Q K L+ + L+ ++ P A
Sbjct: 18 EK--QALKK--LQASLKLYADDSAPALA 41
>3zvl_A Bifunctional polynucleotide phosphatase/kinase;
hydrolase-transferase complex, base excision repair,
BER, non-homologous END-joining, NHEJ; 1.65A {Mus
musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B*
3u7h_B* 3u7g_A*
Length = 416
Score = 32.6 bits (73), Expect = 0.32
Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Query: 82 NDKIVISDIDGTITKSDVLGHVLPIMGKDW--AQNGVTRLFTKIKENGYKLLYLS 134
K+ D+DGT+ + G V P DW + + ++ GYKL+ +
Sbjct: 57 QGKVAAFDLDGTLITTRS-GKVFPTSPSDWRILYPEIPKKLQELAAEGYKLVIFT 110
Score = 32.6 bits (73), Expect = 0.32
Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Query: 357 NDKIVISDIDGTITKSDVLGHVLPIMGKDW--AQNGVTRLFTKIKENGYKLLYLS 409
K+ D+DGT+ + G V P DW + + ++ GYKL+ +
Sbjct: 57 QGKVAAFDLDGTLITTRS-GKVFPTSPSDWRILYPEIPKKLQELAAEGYKLVIFT 110
>2obb_A Hypothetical protein; structural genomics, PSI-2, PR structure
initiative, midwest center for structural genomic
unknown function; 2.20A {Bacteroides thetaiotaomicron}
SCOP: c.108.1.25
Length = 142
Score = 31.5 bits (71), Expect = 0.33
Identities = 12/67 (17%), Positives = 24/67 (35%), Gaps = 7/67 (10%)
Query: 82 NDKIVISDIDGTITKSDVLGHVLPIMGKDWAQNGVTRLFTKIKENGYKLLYLSARAIGQS 141
N + D DGTI + P +G++ +++ ++L+ S R
Sbjct: 2 NAMTIAVDFDGTIVEHR-----YPRIGEEIP--FAVETLKLLQQEKHRLILWSVREGELL 54
Query: 142 RVTREYL 148
E+
Sbjct: 55 DEAIEWC 61
Score = 31.5 bits (71), Expect = 0.33
Identities = 12/67 (17%), Positives = 24/67 (35%), Gaps = 7/67 (10%)
Query: 357 NDKIVISDIDGTITKSDVLGHVLPIMGKDWAQNGVTRLFTKIKENGYKLLYLSARAIGQS 416
N + D DGTI + P +G++ +++ ++L+ S R
Sbjct: 2 NAMTIAVDFDGTIVEHR-----YPRIGEEIP--FAVETLKLLQQEKHRLILWSVREGELL 54
Query: 417 RVTREYL 423
E+
Sbjct: 55 DEAIEWC 61
>2x4d_A HLHPP, phospholysine phosphohistidine inorganic pyrophos
phosphatase; hydrolase; 1.92A {Homo sapiens}
Length = 271
Score = 31.8 bits (73), Expect = 0.53
Identities = 9/52 (17%), Positives = 19/52 (36%), Gaps = 10/52 (19%)
Query: 84 KIVISDIDGTITKSDVLG-HVLPIMGKDWAQNGVTRLFTKIKENGYKLLYLS 134
+ V+ DI G + S G + G ++K + K+ + +
Sbjct: 13 RGVLLDISGVLYDSGAGGGTAIA---------GSVEAVARLKRSRLKVRFCT 55
Score = 31.8 bits (73), Expect = 0.53
Identities = 9/52 (17%), Positives = 19/52 (36%), Gaps = 10/52 (19%)
Query: 359 KIVISDIDGTITKSDVLG-HVLPIMGKDWAQNGVTRLFTKIKENGYKLLYLS 409
+ V+ DI G + S G + G ++K + K+ + +
Sbjct: 13 RGVLLDISGVLYDSGAGGGTAIA---------GSVEAVARLKRSRLKVRFCT 55
>3f9r_A Phosphomannomutase; trypanosome glycobiology structural genomics,
isomerase, structural genomics consortium, SGC; 1.85A
{Trypanosoma brucei} PDB: 2i54_A* 2i55_A*
Length = 246
Score = 30.7 bits (68), Expect = 1.2
Identities = 22/188 (11%), Positives = 51/188 (27%), Gaps = 17/188 (9%)
Query: 84 KIVISDIDGTITKSDVLGHVLPIMGKDWAQNGVTRLFTKIKENGYKLLYLSARAIGQSRV 143
+++ D+DGT+T M L + + G+ + + +
Sbjct: 5 VLLLFDVDGTLTPPR--LCQTDEMRA---------LIKRARGAGFCVGTVGGSDFAKQV- 52
Query: 144 TREYLQSVKQEDLTLPEGPMLL---NPTSLLNAFHTEVIEKKPQEFKISCLRDIMAL-FP 199
+ + Q D E +L + + + +F LR I L P
Sbjct: 53 EQLGRDVLTQFDYVFAENGLLAYRNGLEIHRQSLLNALGNDRIVKFVKKTLRLIADLDIP 112
Query: 200 PNTQPFYAGYGNKVN-DVWSYQAVGIPLSRIFTINSRGEVKHEMTQTFQSTYSNMSYLVD 258
F +N ++ V+ + ++++ +
Sbjct: 113 VQRGTFVEYRNGMINVSPIGRNCSQAERDEFEVYDNEHRVRASLIAELENSFPDFGLKYS 172
Query: 259 QMFPSSLE 266
S +
Sbjct: 173 IGGQISFD 180
Score = 30.7 bits (68), Expect = 1.2
Identities = 22/188 (11%), Positives = 51/188 (27%), Gaps = 17/188 (9%)
Query: 359 KIVISDIDGTITKSDVLGHVLPIMGKDWAQNGVTRLFTKIKENGYKLLYLSARAIGQSRV 418
+++ D+DGT+T M L + + G+ + + +
Sbjct: 5 VLLLFDVDGTLTPPR--LCQTDEMRA---------LIKRARGAGFCVGTVGGSDFAKQV- 52
Query: 419 TREYLQSVKQEDLTLPEGPMLL---NPTSLLNAFHTEVIEKKPQEFKISCLRDIMAL-FP 474
+ + Q D E +L + + + +F LR I L P
Sbjct: 53 EQLGRDVLTQFDYVFAENGLLAYRNGLEIHRQSLLNALGNDRIVKFVKKTLRLIADLDIP 112
Query: 475 PNTQPFYAGYGNKVN-DVWSYQAVGIPLSRIFTINSRGEVKHEMTQTFQSTYSNMSYLVD 533
F +N ++ V+ + ++++ +
Sbjct: 113 VQRGTFVEYRNGMINVSPIGRNCSQAERDEFEVYDNEHRVRASLIAELENSFPDFGLKYS 172
Query: 534 QMFPSSLE 541
S +
Sbjct: 173 IGGQISFD 180
>2zos_A MPGP, mannosyl-3-phosphoglycerate phosphatase; haloacid
dehalogenase like hydrolase, mannosylglycerate,
cytoplasm, hydrolase, magnesium; 1.70A {Pyrococcus
horikoshii} PDB: 1wzc_A
Length = 249
Score = 29.8 bits (66), Expect = 2.0
Identities = 11/65 (16%), Positives = 28/65 (43%), Gaps = 13/65 (20%)
Query: 84 KIVISDIDGTITKSDVLGHVLPIMGKDWAQNGVTRLFTKIKENGYKLLYLSARAIGQSRV 143
+++ DID T+ PI+ ++K+ G+++++ S++ +
Sbjct: 3 RLIFLDIDKTLIPGYEPDPAKPII-------------EELKDMGFEIIFNSSKTRAEQEY 49
Query: 144 TREYL 148
R+ L
Sbjct: 50 YRKEL 54
Score = 29.8 bits (66), Expect = 2.0
Identities = 11/65 (16%), Positives = 28/65 (43%), Gaps = 13/65 (20%)
Query: 359 KIVISDIDGTITKSDVLGHVLPIMGKDWAQNGVTRLFTKIKENGYKLLYLSARAIGQSRV 418
+++ DID T+ PI+ ++K+ G+++++ S++ +
Sbjct: 3 RLIFLDIDKTLIPGYEPDPAKPII-------------EELKDMGFEIIFNSSKTRAEQEY 49
Query: 419 TREYL 423
R+ L
Sbjct: 50 YRKEL 54
>1xpj_A Hypothetical protein; structural genomics, MCSG, protein STR
initiative, PSI, midwest center for structural genomics,
UN function; HET: TLA; 2.30A {Vibrio cholerae} SCOP:
c.108.1.18
Length = 126
Score = 28.3 bits (63), Expect = 3.2
Identities = 12/68 (17%), Positives = 27/68 (39%), Gaps = 13/68 (19%)
Query: 84 KIVISDIDGTITKSDVLGHVLPIMGKDWAQ----NGVTRLFTKIKENGYKLLYLSARAIG 139
K +I D+DGT+T+++ D+ V + + G++++ +AR +
Sbjct: 2 KKLIVDLDGTLTQAN---------TSDYRNVLPRLDVIEQLREYHQLGFEIVISTARNMR 52
Query: 140 QSRVTREY 147
Sbjct: 53 TYEGNVGK 60
Score = 28.3 bits (63), Expect = 3.2
Identities = 12/68 (17%), Positives = 27/68 (39%), Gaps = 13/68 (19%)
Query: 359 KIVISDIDGTITKSDVLGHVLPIMGKDWAQ----NGVTRLFTKIKENGYKLLYLSARAIG 414
K +I D+DGT+T+++ D+ V + + G++++ +AR +
Sbjct: 2 KKLIVDLDGTLTQAN---------TSDYRNVLPRLDVIEQLREYHQLGFEIVISTARNMR 52
Query: 415 QSRVTREY 422
Sbjct: 53 TYEGNVGK 60
>1l6r_A Hypothetical protein TA0175; structural genomics, putative
hydrolas midwest center for structural genomics, MCSG,
PSI; 1.40A {Thermoplasma acidophilum} SCOP: c.108.1.10
PDB: 1kyt_A
Length = 227
Score = 29.0 bits (66), Expect = 3.6
Identities = 5/15 (33%), Positives = 9/15 (60%)
Query: 84 KIVISDIDGTITKSD 98
++ D+DG +T D
Sbjct: 6 RLAAIDVDGNLTDRD 20
Score = 29.0 bits (66), Expect = 3.6
Identities = 5/15 (33%), Positives = 9/15 (60%)
Query: 359 KIVISDIDGTITKSD 373
++ D+DG +T D
Sbjct: 6 RLAAIDVDGNLTDRD 20
>2c4n_A Protein NAGD; nucleotide phosphatase, HAD superfamily, UMP
phosphatase, carbohydrate metabolism, hydrolase; 1.8A
{Escherichia coli} SCOP: c.108.1.14
Length = 250
Score = 28.6 bits (65), Expect = 4.6
Identities = 13/51 (25%), Positives = 19/51 (37%), Gaps = 12/51 (23%)
Query: 84 KIVISDIDGTITKSDVLGHVLPIMGKDWAQNGVTRLFTKIKENGYKLLYLS 134
K VI DIDG + + +P G I + G L+ L+
Sbjct: 4 KNVICDIDGVLMHDN---VAVP---------GAAEFLHGIMDKGLPLVLLT 42
Score = 28.6 bits (65), Expect = 4.6
Identities = 13/51 (25%), Positives = 19/51 (37%), Gaps = 12/51 (23%)
Query: 359 KIVISDIDGTITKSDVLGHVLPIMGKDWAQNGVTRLFTKIKENGYKLLYLS 409
K VI DIDG + + +P G I + G L+ L+
Sbjct: 4 KNVICDIDGVLMHDN---VAVP---------GAAEFLHGIMDKGLPLVLLT 42
>1wr8_A Phosphoglycolate phosphatase; alpha / beta core domain, HAD
superfamily, structural genomi structural
genomics/proteomics initiative, RSGI; 1.60A {Pyrococcus
horikoshii} SCOP: c.108.1.10
Length = 231
Score = 28.6 bits (65), Expect = 4.7
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 84 KIVISDIDGTITKSD 98
K + DIDGTIT +
Sbjct: 4 KAISIDIDGTITYPN 18
Score = 28.6 bits (65), Expect = 4.7
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 359 KIVISDIDGTITKSD 373
K + DIDGTIT +
Sbjct: 4 KAISIDIDGTITYPN 18
>2ho4_A Haloacid dehalogenase-like hydrolase domain containing 2; HDHD2,
protein structure initiative, PSI, center for eukaryotic
structural genomics, CESG; 2.20A {Mus musculus} PDB:
3hlt_A
Length = 259
Score = 28.3 bits (64), Expect = 5.8
Identities = 8/51 (15%), Positives = 20/51 (39%), Gaps = 12/51 (23%)
Query: 84 KIVISDIDGTITKSDVLGHVLPIMGKDWAQNGVTRLFTKIKENGYKLLYLS 134
K V+ D++GT+ D +P G +++ + +++
Sbjct: 8 KAVLVDLNGTLHIED---AAVP---------GAQEALKRLRATSVMVRFVT 46
Score = 28.3 bits (64), Expect = 5.8
Identities = 8/51 (15%), Positives = 20/51 (39%), Gaps = 12/51 (23%)
Query: 359 KIVISDIDGTITKSDVLGHVLPIMGKDWAQNGVTRLFTKIKENGYKLLYLS 409
K V+ D++GT+ D +P G +++ + +++
Sbjct: 8 KAVLVDLNGTLHIED---AAVP---------GAQEALKRLRATSVMVRFVT 46
>2fea_A 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase;
2633731, structural genomics, joint center for
structural GE JCSG; HET: MSE; 2.00A {Bacillus subtilis}
SCOP: c.108.1.20
Length = 236
Score = 27.8 bits (62), Expect = 7.9
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 84 KIVISDIDGTITKSDVLGHVLPIMGKD 110
+I D DGTIT +D + +++
Sbjct: 7 PFIICDFDGTITMNDNIINIMKTFAPP 33
Score = 27.8 bits (62), Expect = 7.9
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 359 KIVISDIDGTITKSDVLGHVLPIMGKD 385
+I D DGTIT +D + +++
Sbjct: 7 PFIICDFDGTITMNDNIINIMKTFAPP 33
>1xvi_A MPGP, YEDP, putative mannosyl-3-phosphoglycerate phosphatase;
hypothetical protein, conserved protein, phophatase-like
domain; HET: 1PE PG4 PGE; 2.26A {Escherichia coli K12}
SCOP: c.108.1.10
Length = 275
Score = 28.1 bits (62), Expect = 8.4
Identities = 13/65 (20%), Positives = 26/65 (40%), Gaps = 11/65 (16%)
Query: 84 KIVISDIDGTITKSDVLGHVLPIMGKDWAQNGVTRLFTKIKENGYKLLYLSARAIGQSRV 143
+V SD+DGT+ S DW T+++E ++ S++ +
Sbjct: 10 LLVFSDLDGTLLDSH---------SYDWQPA--APWLTRLREANVPVILCSSKTSAEMLY 58
Query: 144 TREYL 148
++ L
Sbjct: 59 LQKTL 63
Score = 28.1 bits (62), Expect = 8.4
Identities = 13/65 (20%), Positives = 26/65 (40%), Gaps = 11/65 (16%)
Query: 359 KIVISDIDGTITKSDVLGHVLPIMGKDWAQNGVTRLFTKIKENGYKLLYLSARAIGQSRV 418
+V SD+DGT+ S DW T+++E ++ S++ +
Sbjct: 10 LLVFSDLDGTLLDSH---------SYDWQPA--APWLTRLREANVPVILCSSKTSAEMLY 58
Query: 419 TREYL 423
++ L
Sbjct: 59 LQKTL 63
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.132 0.388
Gapped
Lambda K H
0.267 0.0457 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,470,584
Number of extensions: 499584
Number of successful extensions: 978
Number of sequences better than 10.0: 1
Number of HSP's gapped: 974
Number of HSP's successfully gapped: 43
Length of query: 567
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 468
Effective length of database: 3,937,614
Effective search space: 1842803352
Effective search space used: 1842803352
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.6 bits)