RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12533
(567 letters)
>d1ltqa1 c.108.1.9 (A:153-301) Polynucleotide kinase, phosphatase
domain {Bacteriophage T4 [TaxId: 10665]}
Length = 149
Score = 72.9 bits (178), Expect = 7e-16
Identities = 24/143 (16%), Positives = 49/143 (34%), Gaps = 11/143 (7%)
Query: 84 KIVISDIDGTITKSDVLGHVLPI-MGKDWAQNGVTRLFTKIKENGYKLLYLSARAIGQSR 142
K VI D+DGT+ K + G D V L GY+++ +S R G
Sbjct: 8 KAVIFDVDGTLAKMNGRGPYDLEKCDTDVINPMVVELSKMYALMGYQIVVVSGRESGTKE 67
Query: 143 VTREYLQSVKQEDLTLPEGPMLLNPTSLLNAFHTEVIEKKPQEFKISCLRDIMALFPPNT 202
+Y + ++ + P+++ + + K+ P+
Sbjct: 68 DPTKYYRMTRKWVEDIAGVPLVMQCQREQGDTRKDDVVKEEI---------FWKHIAPHF 118
Query: 203 QPFYAGYGNKVNDVWSYQAVGIP 225
A ++ V ++ +G+
Sbjct: 119 DVKLA-IDDRTQVVEMWRRIGVE 140
Score = 72.9 bits (178), Expect = 7e-16
Identities = 24/143 (16%), Positives = 49/143 (34%), Gaps = 11/143 (7%)
Query: 359 KIVISDIDGTITKSDVLGHVLPI-MGKDWAQNGVTRLFTKIKENGYKLLYLSARAIGQSR 417
K VI D+DGT+ K + G D V L GY+++ +S R G
Sbjct: 8 KAVIFDVDGTLAKMNGRGPYDLEKCDTDVINPMVVELSKMYALMGYQIVVVSGRESGTKE 67
Query: 418 VTREYLQSVKQEDLTLPEGPMLLNPTSLLNAFHTEVIEKKPQEFKISCLRDIMALFPPNT 477
+Y + ++ + P+++ + + K+ P+
Sbjct: 68 DPTKYYRMTRKWVEDIAGVPLVMQCQREQGDTRKDDVVKEEI---------FWKHIAPHF 118
Query: 478 QPFYAGYGNKVNDVWSYQAVGIP 500
A ++ V ++ +G+
Sbjct: 119 DVKLA-IDDRTQVVEMWRRIGVE 140
>d2feaa1 c.108.1.20 (A:2-227)
2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate
phosphatase MtnX {Bacillus subtilis [TaxId: 1423]}
Length = 226
Score = 32.3 bits (72), Expect = 0.10
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 84 KIVISDIDGTITKSDVLGHVLPIMGKD 110
+I D DGTIT +D + +++
Sbjct: 5 PFIICDFDGTITMNDNIINIMKTFAPP 31
Score = 32.3 bits (72), Expect = 0.10
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 359 KIVISDIDGTITKSDVLGHVLPIMGKD 385
+I D DGTIT +D + +++
Sbjct: 5 PFIICDFDGTITMNDNIINIMKTFAPP 31
>d2obba1 c.108.1.25 (A:1-122) Hypothetical protein BT0820
{Bacteroides thetaiotaomicron [TaxId: 818]}
Length = 122
Score = 31.0 bits (70), Expect = 0.13
Identities = 13/66 (19%), Positives = 26/66 (39%), Gaps = 8/66 (12%)
Query: 84 KIVISDIDGTITKSDVLGHVLPIMGKDWAQNGVTRLFTKIKENGYKLLYLSARAIGQSRV 143
I + D DGTI + H P +G++ +++ ++L+ S R
Sbjct: 2 TIAV-DFDGTIVE-----HRYPRIGEEIP--FAVETLKLLQQEKHRLILWSVREGELLDE 53
Query: 144 TREYLQ 149
E+ +
Sbjct: 54 AIEWCR 59
Score = 31.0 bits (70), Expect = 0.13
Identities = 13/66 (19%), Positives = 26/66 (39%), Gaps = 8/66 (12%)
Query: 359 KIVISDIDGTITKSDVLGHVLPIMGKDWAQNGVTRLFTKIKENGYKLLYLSARAIGQSRV 418
I + D DGTI + H P +G++ +++ ++L+ S R
Sbjct: 2 TIAV-DFDGTIVE-----HRYPRIGEEIP--FAVETLKLLQQEKHRLILWSVREGELLDE 53
Query: 419 TREYLQ 424
E+ +
Sbjct: 54 AIEWCR 59
>d1j97a_ c.108.1.4 (A:) Phosphoserine phosphatase {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 210
Score = 31.3 bits (69), Expect = 0.20
Identities = 6/37 (16%), Positives = 17/37 (45%)
Query: 84 KIVISDIDGTITKSDVLGHVLPIMGKDWAQNGVTRLF 120
K+++ D D T+ ++ + + G + +T+
Sbjct: 5 KLILFDFDSTLVNNETIDEIAREAGVEEEVKKITKEA 41
Score = 31.3 bits (69), Expect = 0.20
Identities = 6/37 (16%), Positives = 17/37 (45%)
Query: 359 KIVISDIDGTITKSDVLGHVLPIMGKDWAQNGVTRLF 395
K+++ D D T+ ++ + + G + +T+
Sbjct: 5 KLILFDFDSTLVNNETIDEIAREAGVEEEVKKITKEA 41
>d1yj5a1 c.108.1.9 (A:144-338) 5' polynucleotide kinase-3'
phosphatase, middle domain {Mouse (Mus musculus) [TaxId:
10090]}
Length = 195
Score = 30.1 bits (67), Expect = 0.58
Identities = 9/56 (16%), Positives = 20/56 (35%), Gaps = 1/56 (1%)
Query: 80 RWNDKIVISDIDGTITKSDV-LGHVLPIMGKDWAQNGVTRLFTKIKENGYKLLYLS 134
+ K+ D+DGT+ + + + ++ GYKL+ +
Sbjct: 18 KPQGKVAAFDLDGTLITTRSGKVFPTSPSDWRILYPEIPKKLQELAAEGYKLVIFT 73
Score = 30.1 bits (67), Expect = 0.58
Identities = 9/56 (16%), Positives = 20/56 (35%), Gaps = 1/56 (1%)
Query: 355 RWNDKIVISDIDGTITKSDV-LGHVLPIMGKDWAQNGVTRLFTKIKENGYKLLYLS 409
+ K+ D+DGT+ + + + ++ GYKL+ +
Sbjct: 18 KPQGKVAAFDLDGTLITTRSGKVFPTSPSDWRILYPEIPKKLQELAAEGYKLVIFT 73
>d1rkqa_ c.108.1.10 (A:) Hypothetical protein YidA {Escherichia coli
[TaxId: 562]}
Length = 271
Score = 30.3 bits (67), Expect = 0.60
Identities = 16/115 (13%), Positives = 35/115 (30%), Gaps = 11/115 (9%)
Query: 84 KIVISDIDGTITKSDVLGHVLPIMGKDWAQNGVTRLFTKIKENGYKLLYLSARAIGQSRV 143
K++ D+DGT+ D H + V + G ++ + R
Sbjct: 5 KLIAIDMDGTLLLPD---HTIS--------PAVKNAIAAARARGVNVVLTTGRPYAGVHN 53
Query: 144 TREYLQSVKQEDLTLPEGPMLLNPTSLLNAFHTEVIEKKPQEFKISCLRDIMALF 198
+ L + D + L+ + + + F R++ + F
Sbjct: 54 YLKELHMEQPGDYCITYNGALVQKAADGSTVAQTALSYDDYRFLEKLSREVGSHF 108
Score = 30.3 bits (67), Expect = 0.60
Identities = 16/115 (13%), Positives = 35/115 (30%), Gaps = 11/115 (9%)
Query: 359 KIVISDIDGTITKSDVLGHVLPIMGKDWAQNGVTRLFTKIKENGYKLLYLSARAIGQSRV 418
K++ D+DGT+ D H + V + G ++ + R
Sbjct: 5 KLIAIDMDGTLLLPD---HTIS--------PAVKNAIAAARARGVNVVLTTGRPYAGVHN 53
Query: 419 TREYLQSVKQEDLTLPEGPMLLNPTSLLNAFHTEVIEKKPQEFKISCLRDIMALF 473
+ L + D + L+ + + + F R++ + F
Sbjct: 54 YLKELHMEQPGDYCITYNGALVQKAADGSTVAQTALSYDDYRFLEKLSREVGSHF 108
>d2rbka1 c.108.1.10 (A:2-261) Sugar-phosphate phosphatase BT4131
{Bacteroides thetaiotaomicron [TaxId: 818]}
Length = 260
Score = 30.3 bits (67), Expect = 0.62
Identities = 12/66 (18%), Positives = 19/66 (28%), Gaps = 10/66 (15%)
Query: 84 KIVISDIDGTITKSDVLGHVLPIMGKDWAQNGVTRLFTKIKENGYKLLYLSARAIGQSRV 143
K + DIDGT+ + H +P + G K+ + R
Sbjct: 2 KALFFDIDGTLVSFE--THRIPSSTIEA--------LEAAHAKGLKIFIATGRPKAIINN 51
Query: 144 TREYLQ 149
E
Sbjct: 52 LSELQD 57
Score = 30.3 bits (67), Expect = 0.62
Identities = 12/66 (18%), Positives = 19/66 (28%), Gaps = 10/66 (15%)
Query: 359 KIVISDIDGTITKSDVLGHVLPIMGKDWAQNGVTRLFTKIKENGYKLLYLSARAIGQSRV 418
K + DIDGT+ + H +P + G K+ + R
Sbjct: 2 KALFFDIDGTLVSFE--THRIPSSTIEA--------LEAAHAKGLKIFIATGRPKAIINN 51
Query: 419 TREYLQ 424
E
Sbjct: 52 LSELQD 57
>d1xpja_ c.108.1.18 (A:) Hypothetical protein VC0232 {Vibrio
cholerae [TaxId: 666]}
Length = 124
Score = 29.1 bits (65), Expect = 0.68
Identities = 14/59 (23%), Positives = 30/59 (50%), Gaps = 9/59 (15%)
Query: 84 KIVISDIDGTITKSD--VLGHVLPIMGKDWAQNGVTRLFTKIKENGYKLLYLSARAIGQ 140
K +I D+DGT+T+++ +VLP + V + + G++++ +AR +
Sbjct: 2 KKLIVDLDGTLTQANTSDYRNVLPRL-------DVIEQLREYHQLGFEIVISTARNMRT 53
Score = 29.1 bits (65), Expect = 0.68
Identities = 14/59 (23%), Positives = 30/59 (50%), Gaps = 9/59 (15%)
Query: 359 KIVISDIDGTITKSD--VLGHVLPIMGKDWAQNGVTRLFTKIKENGYKLLYLSARAIGQ 415
K +I D+DGT+T+++ +VLP + V + + G++++ +AR +
Sbjct: 2 KKLIVDLDGTLTQANTSDYRNVLPRL-------DVIEQLREYHQLGFEIVISTARNMRT 53
>d1rlma_ c.108.1.10 (A:) Sugar phosphatase SupH (YbiV) {Escherichia
coli [TaxId: 562]}
Length = 269
Score = 29.9 bits (66), Expect = 0.80
Identities = 11/55 (20%), Positives = 22/55 (40%), Gaps = 10/55 (18%)
Query: 84 KIVISDIDGTITKSDVLGHVLPIMGKDWAQNGVTRLFTKIKENGYKLLYLSARAI 138
K++++D+DGT K + Q + ++K+ G K + S
Sbjct: 3 KVIVTDMDGTFLNDA----------KTYNQPRFMAQYQELKKRGIKFVVASGNQY 47
Score = 29.9 bits (66), Expect = 0.80
Identities = 11/55 (20%), Positives = 22/55 (40%), Gaps = 10/55 (18%)
Query: 359 KIVISDIDGTITKSDVLGHVLPIMGKDWAQNGVTRLFTKIKENGYKLLYLSARAI 413
K++++D+DGT K + Q + ++K+ G K + S
Sbjct: 3 KVIVTDMDGTFLNDA----------KTYNQPRFMAQYQELKKRGIKFVVASGNQY 47
>d2bdua1 c.108.1.21 (A:7-297) Cytosolic 5'-nucleotidase III {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 291
Score = 29.1 bits (65), Expect = 1.2
Identities = 6/21 (28%), Positives = 11/21 (52%)
Query: 86 VISDIDGTITKSDVLGHVLPI 106
+I+D D T+++ G P
Sbjct: 40 IITDFDMTLSRFSYNGKRCPT 60
Score = 29.1 bits (65), Expect = 1.2
Identities = 6/21 (28%), Positives = 11/21 (52%)
Query: 361 VISDIDGTITKSDVLGHVLPI 381
+I+D D T+++ G P
Sbjct: 40 IITDFDMTLSRFSYNGKRCPT 60
>d2amya1 c.108.1.10 (A:4-246) Phosphomannomutase 2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 243
Score = 28.9 bits (63), Expect = 1.7
Identities = 5/16 (31%), Positives = 9/16 (56%)
Query: 83 DKIVISDIDGTITKSD 98
+ + D+DGT+T
Sbjct: 3 PALCLFDVDGTLTAPR 18
Score = 28.9 bits (63), Expect = 1.7
Identities = 5/16 (31%), Positives = 9/16 (56%)
Query: 358 DKIVISDIDGTITKSD 373
+ + D+DGT+T
Sbjct: 3 PALCLFDVDGTLTAPR 18
>d1wzca1 c.108.1.10 (A:1-243) Putative mannosyl-3-phosphoglycerate
phosphatase MPGP (YedP) {Archaeon Pyrococcus horikoshii
[TaxId: 53953]}
Length = 243
Score = 28.5 bits (62), Expect = 1.8
Identities = 28/249 (11%), Positives = 75/249 (30%), Gaps = 31/249 (12%)
Query: 84 KIVISDIDGTITKSDVLGHVLPIMGKDWAQNGVTRLFTKIKENGYKLLYLSARAIGQSRV 143
+++ DID T+ PI+ ++K+ G+++++ S++ +
Sbjct: 3 RLIFLDIDKTLIPGYEPDPAKPII-------------EELKDMGFEIIFNSSKTRAEQEY 49
Query: 144 TREYL------QSVKQEDLTLPEGPMLLNPTSLLNAFHTEVIEKKPQEFKISCLRDIMAL 197
R+ L S + +P+G + + + E L+ + +
Sbjct: 50 YRKELEVETPFISENGSAIFIPKGYFPFDVKGKEVGNYIVIELGIRVEKIREELKKLENI 109
Query: 198 FPPNTQPFYAGYGNKVNDVWSYQAVGIPLSRIFTINSRGEVKHEMTQTFQSTYSNMSYLV 257
+ + + V + + R ++ + ++ + V
Sbjct: 110 YGLKYYGNSTKEEIEKFTGMPPELVPLAMEREYSE----TIFEWSRDGWEEVLVEGGFKV 165
Query: 258 DQMFPSSLEGTSSEDFTTMAEILNQIPEITDQAV----SSDSDEDMIRN-KRGL---NAN 309
+S+ +L+ + S +D M + +
Sbjct: 166 TMGSRFYTVHGNSDKGKAAKILLDFYKRLGQIESYAVGDSYNDFPMFEVVDKVFIVGSLK 225
Query: 310 HKKTLRLTS 318
HKK ++S
Sbjct: 226 HKKAQNVSS 234
Score = 27.7 bits (60), Expect = 3.8
Identities = 11/65 (16%), Positives = 28/65 (43%), Gaps = 13/65 (20%)
Query: 359 KIVISDIDGTITKSDVLGHVLPIMGKDWAQNGVTRLFTKIKENGYKLLYLSARAIGQSRV 418
+++ DID T+ PI+ ++K+ G+++++ S++ +
Sbjct: 3 RLIFLDIDKTLIPGYEPDPAKPII-------------EELKDMGFEIIFNSSKTRAEQEY 49
Query: 419 TREYL 423
R+ L
Sbjct: 50 YRKEL 54
>d1nrwa_ c.108.1.10 (A:) Hypothetical protein YwpJ {Bacillus
subtilis [TaxId: 1423]}
Length = 285
Score = 28.4 bits (62), Expect = 2.1
Identities = 12/66 (18%), Positives = 27/66 (40%), Gaps = 11/66 (16%)
Query: 84 KIVISDIDGTITKSDVLGHVLPIMGKDWAQNGVTRLFTKIKENGYKLLYLSARAIGQSRV 143
K++ D+DGT+ S H + + ++ + + +G +++ + RA
Sbjct: 2 KLIAIDLDGTLLNSK---HQVSLENENA--------LRQAQRDGIEVVVSTGRAHFDVMS 50
Query: 144 TREYLQ 149
E L
Sbjct: 51 IFEPLG 56
Score = 28.4 bits (62), Expect = 2.1
Identities = 12/66 (18%), Positives = 27/66 (40%), Gaps = 11/66 (16%)
Query: 359 KIVISDIDGTITKSDVLGHVLPIMGKDWAQNGVTRLFTKIKENGYKLLYLSARAIGQSRV 418
K++ D+DGT+ S H + + ++ + + +G +++ + RA
Sbjct: 2 KLIAIDLDGTLLNSK---HQVSLENENA--------LRQAQRDGIEVVVSTGRAHFDVMS 50
Query: 419 TREYLQ 424
E L
Sbjct: 51 IFEPLG 56
>d1w85i_ a.9.1.1 (I:) E3/E1 binding domain of dihydrolipoyl
acetyltransferase {Bacillus stearothermophilus [TaxId:
1422]}
Length = 42
Score = 25.6 bits (57), Expect = 2.1
Identities = 3/21 (14%), Positives = 9/21 (42%)
Query: 83 DKIVISDIDGTITKSDVLGHV 103
+ + +G + K D+ +
Sbjct: 20 RLVQGTGKNGRVLKEDIDAFL 40
Score = 25.6 bits (57), Expect = 2.1
Identities = 3/21 (14%), Positives = 9/21 (42%)
Query: 358 DKIVISDIDGTITKSDVLGHV 378
+ + +G + K D+ +
Sbjct: 20 RLVQGTGKNGRVLKEDIDAFL 40
>d1xvia_ c.108.1.10 (A:) Putative mannosyl-3-phosphoglycerate
phosphatase MPGP (YedP) {Escherichia coli [TaxId: 562]}
Length = 232
Score = 28.1 bits (61), Expect = 2.2
Identities = 12/59 (20%), Positives = 23/59 (38%), Gaps = 11/59 (18%)
Query: 84 KIVISDIDGTITKSDVLGHVLPIMGKDWAQNGVTRLFTKIKENGYKLLYLSARAIGQSR 142
+V SD+DGT+ S DW T+++E ++ S++ +
Sbjct: 5 LLVFSDLDGTLLDSH---------SYDWQPA--APWLTRLREANVPVILCSSKTSAEML 52
Score = 28.1 bits (61), Expect = 2.2
Identities = 12/59 (20%), Positives = 23/59 (38%), Gaps = 11/59 (18%)
Query: 359 KIVISDIDGTITKSDVLGHVLPIMGKDWAQNGVTRLFTKIKENGYKLLYLSARAIGQSR 417
+V SD+DGT+ S DW T+++E ++ S++ +
Sbjct: 5 LLVFSDLDGTLLDSH---------SYDWQPA--APWLTRLREANVPVILCSSKTSAEML 52
>d2b30a1 c.108.1.10 (A:18-300) PFL1270w orthologue {Plasmodium vivax
[TaxId: 5855]}
Length = 283
Score = 28.4 bits (62), Expect = 2.3
Identities = 24/160 (15%), Positives = 43/160 (26%), Gaps = 12/160 (7%)
Query: 84 KIVISDIDGTITKSDVLGHVLPIMGKDWAQNGVTRLFTKIKENGYKLLYLSARAIGQSRV 143
K+++ D DGT+ +P D + E GY + + R+
Sbjct: 11 KLLLIDFDGTLFVDK--DIKVPSENIDA--------IKEAIEKGYMVSICTGRSKVGILS 60
Query: 144 TREYLQSVKQEDLTLPEGPMLLNPTSLLNA--FHTEVIEKKPQEFKISCLRDIMALFPPN 201
K +P + E IE IS L + +
Sbjct: 61 AFGEENLKKMNFYGMPGVYINGTIVYDQIGYTLLDETIETDVYAELISYLVEKNLVNQTI 120
Query: 202 TQPFYAGYGNKVNDVWSYQAVGIPLSRIFTINSRGEVKHE 241
+ Y + N + +R I +K+
Sbjct: 121 FHRGESNYVTEDNKYADFLQKMYSENRSIIIRHNEMLKYR 160
Score = 28.4 bits (62), Expect = 2.3
Identities = 24/160 (15%), Positives = 43/160 (26%), Gaps = 12/160 (7%)
Query: 359 KIVISDIDGTITKSDVLGHVLPIMGKDWAQNGVTRLFTKIKENGYKLLYLSARAIGQSRV 418
K+++ D DGT+ +P D + E GY + + R+
Sbjct: 11 KLLLIDFDGTLFVDK--DIKVPSENIDA--------IKEAIEKGYMVSICTGRSKVGILS 60
Query: 419 TREYLQSVKQEDLTLPEGPMLLNPTSLLNA--FHTEVIEKKPQEFKISCLRDIMALFPPN 476
K +P + E IE IS L + +
Sbjct: 61 AFGEENLKKMNFYGMPGVYINGTIVYDQIGYTLLDETIETDVYAELISYLVEKNLVNQTI 120
Query: 477 TQPFYAGYGNKVNDVWSYQAVGIPLSRIFTINSRGEVKHE 516
+ Y + N + +R I +K+
Sbjct: 121 FHRGESNYVTEDNKYADFLQKMYSENRSIIIRHNEMLKYR 160
>d2cyua1 a.9.1.1 (A:2-40) E3-binding domain of dihydrolipoamide
succinyltransferase {Escherichia coli [TaxId: 562]}
Length = 39
Score = 25.2 bits (56), Expect = 2.3
Identities = 6/21 (28%), Positives = 11/21 (52%)
Query: 83 DKIVISDIDGTITKSDVLGHV 103
I + + G +T+ DV H+
Sbjct: 17 SAIKGTGVGGRLTREDVEKHL 37
Score = 25.2 bits (56), Expect = 2.3
Identities = 6/21 (28%), Positives = 11/21 (52%)
Query: 358 DKIVISDIDGTITKSDVLGHV 378
I + + G +T+ DV H+
Sbjct: 17 SAIKGTGVGGRLTREDVEKHL 37
>d1nnla_ c.108.1.4 (A:) Phosphoserine phosphatase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 217
Score = 27.6 bits (60), Expect = 3.3
Identities = 6/27 (22%), Positives = 13/27 (48%)
Query: 84 KIVISDIDGTITKSDVLGHVLPIMGKD 110
V D+D T+ + + + + I G +
Sbjct: 11 DAVCFDVDSTVIREEGIDELAKICGVE 37
Score = 27.6 bits (60), Expect = 3.3
Identities = 6/27 (22%), Positives = 13/27 (48%)
Query: 359 KIVISDIDGTITKSDVLGHVLPIMGKD 385
V D+D T+ + + + + I G +
Sbjct: 11 DAVCFDVDSTVIREEGIDELAKICGVE 37
>d1nf2a_ c.108.1.10 (A:) Hypothetical protein TM0651 {Thermotoga
maritima [TaxId: 2336]}
Length = 267
Score = 27.6 bits (60), Expect = 3.4
Identities = 4/15 (26%), Positives = 10/15 (66%)
Query: 84 KIVISDIDGTITKSD 98
++ + D+DGT+ +
Sbjct: 3 RVFVFDLDGTLLNDN 17
Score = 27.6 bits (60), Expect = 3.4
Identities = 4/15 (26%), Positives = 10/15 (66%)
Query: 359 KIVISDIDGTITKSD 373
++ + D+DGT+ +
Sbjct: 3 RVFVFDLDGTLLNDN 17
>d2fuea1 c.108.1.10 (A:13-256) Phosphomannomutase 1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 244
Score = 27.4 bits (59), Expect = 4.1
Identities = 20/257 (7%), Positives = 71/257 (27%), Gaps = 39/257 (15%)
Query: 84 KIVISDIDGTITKSDVLGHVLPIMGKDWAQNGVTRLFTKIKENGYKLLYLSARAIGQSRV 143
+ + D+DGT+T + + P + K++ + + +
Sbjct: 2 VLCLFDVDGTLTPAR--QKIDPEV---------AAFLQKLRSRVQIGVVGGSDYCKIAEQ 50
Query: 144 TREYLQSVKQEDLTLPEGPMLLNPTSLLNAFHTEVIEKKPQEFKISCLRDIMALFPPNTQ 203
+ + +++ D + + H ++ K+ + + + +
Sbjct: 51 LGDGDEVIEKFD-------YVFAENGTVQYKHGRLLSKQTIQNHLGEELLQDLINFCLSY 103
Query: 204 PFYAGYGNKVNDVWSYQAVGIPLSRIFTINSRGEVKHEMTQTFQSTYSNMSYLVDQMFPS 263
K ++ + +S I + E + + +
Sbjct: 104 MALLRLPKKRGTFIEFRNGMLNISPIGRSCTLEERIEFSELDKKEKIREKFVEALKTEFA 163
Query: 264 SLEGTSSEDFTTMAEI----------LNQIPEIT--------DQAVSSDSDEDMIRNKRG 305
S ++ L+ + + + ++ +D ++ + R
Sbjct: 164 GKGLRFSRGGMISFDVFPEGWDKRYCLDSLDQDSFDTIHFFGNETSPGGNDFEIFADPRT 223
Query: 306 LN---ANHKKTLRLTSE 319
+ + + T++ E
Sbjct: 224 VGHSVVSPQDTVQRCRE 240
Score = 27.4 bits (59), Expect = 4.5
Identities = 5/15 (33%), Positives = 10/15 (66%)
Query: 359 KIVISDIDGTITKSD 373
+ + D+DGT+T +
Sbjct: 2 VLCLFDVDGTLTPAR 16
>d1l6ra_ c.108.1.10 (A:) Phosphoglycolate phosphatase, PGPase
{Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Length = 225
Score = 27.3 bits (59), Expect = 4.2
Identities = 10/65 (15%), Positives = 22/65 (33%), Gaps = 11/65 (16%)
Query: 84 KIVISDIDGTITKSDVLGHVLPIMGKDWAQNGVTRLFTKIKENGYKLLYLSARAIGQSRV 143
++ D+DG +T D ++ + ++ G + LS I
Sbjct: 4 RLAAIDVDGNLTDRD---RLISTKAIES--------IRSAEKKGLTVSLLSGNVIPVVYA 52
Query: 144 TREYL 148
+ +L
Sbjct: 53 LKIFL 57
Score = 27.3 bits (59), Expect = 4.2
Identities = 10/65 (15%), Positives = 22/65 (33%), Gaps = 11/65 (16%)
Query: 359 KIVISDIDGTITKSDVLGHVLPIMGKDWAQNGVTRLFTKIKENGYKLLYLSARAIGQSRV 418
++ D+DG +T D ++ + ++ G + LS I
Sbjct: 4 RLAAIDVDGNLTDRD---RLISTKAIES--------IRSAEKKGLTVSLLSGNVIPVVYA 52
Query: 419 TREYL 423
+ +L
Sbjct: 53 LKIFL 57
>d1wr8a_ c.108.1.10 (A:) Phosphoglycolate phosphatase, PGPase
{Pyrococcus horikoshii [TaxId: 53953]}
Length = 230
Score = 26.9 bits (58), Expect = 5.5
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 84 KIVISDIDGTITKSD 98
K + DIDGTIT +
Sbjct: 3 KAISIDIDGTITYPN 17
Score = 26.9 bits (58), Expect = 5.5
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 359 KIVISDIDGTITKSD 373
K + DIDGTIT +
Sbjct: 3 KAISIDIDGTITYPN 17
>d1syya_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Chlamydia
trachomatis [TaxId: 813]}
Length = 317
Score = 26.6 bits (58), Expect = 8.6
Identities = 5/41 (12%), Positives = 11/41 (26%)
Query: 515 HEMTQTFQSTYSNMSYLVDQMFPSSLEGTSSEDFSQFVYWR 555
E+ + + P + G + F +V
Sbjct: 254 QEIVELIKRAVDLEIEYAQDCLPRGILGLRASMFIDYVQHI 294
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.132 0.388
Gapped
Lambda K H
0.267 0.0452 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,072,359
Number of extensions: 96079
Number of successful extensions: 307
Number of sequences better than 10.0: 1
Number of HSP's gapped: 303
Number of HSP's successfully gapped: 49
Length of query: 567
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 477
Effective length of database: 1,171,896
Effective search space: 558994392
Effective search space used: 558994392
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.7 bits)