BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12534
(343 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4F5C|A Chain A, Crystal Structure Of The Spike Receptor Binding Domain Of
A Porcine Respiratory Coronavirus In Complex With The
Pig Aminopeptidase N Ectodomain
pdb|4F5C|B Chain B, Crystal Structure Of The Spike Receptor Binding Domain Of
A Porcine Respiratory Coronavirus In Complex With The
Pig Aminopeptidase N Ectodomain
Length = 959
Score = 88.2 bits (217), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 79/296 (26%), Positives = 118/296 (39%), Gaps = 93/296 (31%)
Query: 54 VLKLGLQKYIKKKAMGSSTQAELWAFLTNAGHEMRTLPEKMDVETIMNTWTLQTGFPVIR 113
+ K GL Y+ A ++T +LW L A ++ V IM+ WTLQ GFPVI
Sbjct: 472 LFKEGLASYLHAFAYQNTTYLDLWEHLQKAVDAQTSIRLPDTVRAIMDRWTLQMGFPVIT 531
Query: 114 VARDYDAGSAVVKQ---------VRGLGFTLIIIVLINTARTELKGPFTPAVGYHYYGAQ 164
V D G+ K R F + IV I++ +
Sbjct: 532 V--DTKTGNISQKHFLLDSESNVTRSSAFDYLWIVPISSIKN------------------ 571
Query: 165 ELRRDLTTRNRPNFRVTKPSHWLRAEPNLTIKQEDL-NAESDDWIIFNIQVATRNRPNFR 223
V + +WLR +++ Q DL SDDW++ N+ V
Sbjct: 572 --------------GVMQDHYWLR---DVSQAQNDLFKTASDDWVLLNVNV--------- 605
Query: 224 VTKPFHWLRAEPNLTIKQEDLNAESDDWIIFNIQQTGYYRVLYDEKNWYLIIATLRNSTT 283
TGY++V YDE NW +I L+ T
Sbjct: 606 -----------------------------------TGYFQVNYDEDNWRMIQHQLQ--TN 628
Query: 284 YNTIHLLNRAQLIDDAMNLARAGLLDYKIALDVTAYLQYETELVPWRSAMQALGYI 339
+ I ++NRAQ+I D+ NLA A ++ +ALD T +L E E +PW++A+ +L Y
Sbjct: 629 LSVIPVINRAQVIYDSFNLATAHMVPVTLALDNTLFLNGEKEYMPWQAALSSLSYF 684
>pdb|4H5H|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Cleaved Poly-Alanine
pdb|4HOM|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Substance P
Length = 908
Score = 88.2 bits (217), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 79/296 (26%), Positives = 118/296 (39%), Gaps = 93/296 (31%)
Query: 54 VLKLGLQKYIKKKAMGSSTQAELWAFLTNAGHEMRTLPEKMDVETIMNTWTLQTGFPVIR 113
+ K GL Y+ A ++T +LW L A ++ V IM+ WTLQ GFPVI
Sbjct: 428 LFKEGLASYLHAFAYQNTTYLDLWEHLQKAVDAQTSIRLPDTVRAIMDRWTLQMGFPVIT 487
Query: 114 VARDYDAGSAVVKQ---------VRGLGFTLIIIVLINTARTELKGPFTPAVGYHYYGAQ 164
V D G+ K R F + IV I++ +
Sbjct: 488 V--DTKTGNISQKHFLLDSESNVTRSSAFDYLWIVPISSIKN------------------ 527
Query: 165 ELRRDLTTRNRPNFRVTKPSHWLRAEPNLTIKQEDL-NAESDDWIIFNIQVATRNRPNFR 223
V + +WLR +++ Q DL SDDW++ N+ V
Sbjct: 528 --------------GVMQDHYWLR---DVSQAQNDLFKTASDDWVLLNVNV--------- 561
Query: 224 VTKPFHWLRAEPNLTIKQEDLNAESDDWIIFNIQQTGYYRVLYDEKNWYLIIATLRNSTT 283
TGY++V YDE NW +I L+ T
Sbjct: 562 -----------------------------------TGYFQVNYDEDNWRMIQHQLQ--TN 584
Query: 284 YNTIHLLNRAQLIDDAMNLARAGLLDYKIALDVTAYLQYETELVPWRSAMQALGYI 339
+ I ++NRAQ+I D+ NLA A ++ +ALD T +L E E +PW++A+ +L Y
Sbjct: 585 LSVIPVINRAQVIYDSFNLATAHMVPVTLALDNTLFLNGEKEYMPWQAALSSLSYF 640
>pdb|4HOL|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Poly- Alanine
Length = 908
Score = 88.2 bits (217), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 79/296 (26%), Positives = 118/296 (39%), Gaps = 93/296 (31%)
Query: 54 VLKLGLQKYIKKKAMGSSTQAELWAFLTNAGHEMRTLPEKMDVETIMNTWTLQTGFPVIR 113
+ K GL Y+ A ++T +LW L A ++ V IM+ WTLQ GFPVI
Sbjct: 428 LFKEGLASYLHAFAYQNTTYLDLWEHLQKAVDAQTSIRLPDTVRAIMDRWTLQMGFPVIT 487
Query: 114 VARDYDAGSAVVKQ---------VRGLGFTLIIIVLINTARTELKGPFTPAVGYHYYGAQ 164
V D G+ K R F + IV I++ +
Sbjct: 488 V--DTKTGNISQKHFLLDSESNVTRSSAFDYLWIVPISSIKN------------------ 527
Query: 165 ELRRDLTTRNRPNFRVTKPSHWLRAEPNLTIKQEDL-NAESDDWIIFNIQVATRNRPNFR 223
V + +WLR +++ Q DL SDDW++ N+ V
Sbjct: 528 --------------GVMQDHYWLR---DVSQAQNDLFKTASDDWVLLNVNV--------- 561
Query: 224 VTKPFHWLRAEPNLTIKQEDLNAESDDWIIFNIQQTGYYRVLYDEKNWYLIIATLRNSTT 283
TGY++V YDE NW +I L+ T
Sbjct: 562 -----------------------------------TGYFQVNYDEDNWRMIQHQLQ--TN 584
Query: 284 YNTIHLLNRAQLIDDAMNLARAGLLDYKIALDVTAYLQYETELVPWRSAMQALGYI 339
+ I ++NRAQ+I D+ NLA A ++ +ALD T +L E E +PW++A+ +L Y
Sbjct: 585 LSVIPVINRAQVIYDSFNLATAHMVPVTLALDNTLFLNGEKEYMPWQAALSSLSYF 640
>pdb|4FKE|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N
pdb|4FKH|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Alanine
pdb|4FKK|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Bestatin
Length = 909
Score = 88.2 bits (217), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 79/296 (26%), Positives = 118/296 (39%), Gaps = 93/296 (31%)
Query: 54 VLKLGLQKYIKKKAMGSSTQAELWAFLTNAGHEMRTLPEKMDVETIMNTWTLQTGFPVIR 113
+ K GL Y+ A ++T +LW L A ++ V IM+ WTLQ GFPVI
Sbjct: 429 LFKEGLASYLHAFAYQNTTYLDLWEHLQKAVDAQTSIRLPDTVRAIMDRWTLQMGFPVIT 488
Query: 114 VARDYDAGSAVVKQ---------VRGLGFTLIIIVLINTARTELKGPFTPAVGYHYYGAQ 164
V D G+ K R F + IV I++ +
Sbjct: 489 V--DTKTGNISQKHFLLDSESNVTRSSAFDYLWIVPISSIKN------------------ 528
Query: 165 ELRRDLTTRNRPNFRVTKPSHWLRAEPNLTIKQEDL-NAESDDWIIFNIQVATRNRPNFR 223
V + +WLR +++ Q DL SDDW++ N+ V
Sbjct: 529 --------------GVMQDHYWLR---DVSQAQNDLFKTASDDWVLLNVNV--------- 562
Query: 224 VTKPFHWLRAEPNLTIKQEDLNAESDDWIIFNIQQTGYYRVLYDEKNWYLIIATLRNSTT 283
TGY++V YDE NW +I L+ T
Sbjct: 563 -----------------------------------TGYFQVNYDEDNWRMIQHQLQ--TN 585
Query: 284 YNTIHLLNRAQLIDDAMNLARAGLLDYKIALDVTAYLQYETELVPWRSAMQALGYI 339
+ I ++NRAQ+I D+ NLA A ++ +ALD T +L E E +PW++A+ +L Y
Sbjct: 586 LSVIPVINRAQVIYDSFNLATAHMVPVTLALDNTLFLNGEKEYMPWQAALSSLSYF 641
>pdb|4FYQ|A Chain A, Human Aminopeptidase N (Cd13)
pdb|4FYR|A Chain A, Human Aminopeptidase N (Cd13) In Complex With Bestatin
pdb|4FYS|A Chain A, Human Aminopeptidase N (Cd13) In Complex With Angiotensin
Iv
pdb|4FYT|A Chain A, Human Aminopeptidase N (Cd13) In Complex With Amastatin
Length = 903
Score = 77.8 bits (190), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 65/101 (64%), Gaps = 3/101 (2%)
Query: 241 QEDLNAES-DDWIIFNIQQTGYYRVLYDEKNWYLIIATLRNSTTYNTIHLLNRAQLIDDA 299
Q DL + S ++W++ N+ TGYYRV YDE+NW I L+ ++ I ++NRAQ+I+DA
Sbjct: 544 QNDLFSTSGNEWVLLNLNVTGYYRVNYDEENWRKIQTQLQRD--HSAIPVINRAQIINDA 601
Query: 300 MNLARAGLLDYKIALDVTAYLQYETELVPWRSAMQALGYIE 340
NLA A + +AL+ T +L E + +PW +A+ +L Y +
Sbjct: 602 FNLASAHKVPVTLALNNTLFLIEERQYMPWEAALSSLSYFK 642
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 44 LRATGSWQST-VLKLGLQKYIKKKAMGSSTQAELWAFLTNAGHEMRTLPEKMDVETIMNT 102
LR S+ S V K GL Y+ A ++ LW L A + R++ V IMN
Sbjct: 420 LRMLSSFLSEDVFKQGLASYLHTFAYQNTIYLNLWDHLQEAVNN-RSIQLPTTVRDIMNR 478
Query: 103 WTLQTGFPVIRV 114
WTLQ GFPVI V
Sbjct: 479 WTLQMGFPVITV 490
>pdb|3MDJ|A Chain A, Er Aminopeptidase, Erap1, Bound To The Zinc Aminopeptidase
Inhibitor, Bestatin
pdb|3MDJ|B Chain B, Er Aminopeptidase, Erap1, Bound To The Zinc Aminopeptidase
Inhibitor, Bestatin
pdb|3MDJ|C Chain C, Er Aminopeptidase, Erap1, Bound To The Zinc Aminopeptidase
Inhibitor, Bestatin
Length = 921
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 48/82 (58%), Gaps = 2/82 (2%)
Query: 247 ESDDWIIFNIQQTGYYRVLYDEKNWYLIIATLRNSTTYNTIHLLNRAQLIDDAMNLARAG 306
E +WI FN+ GYY V Y++ W + L+ T+ + +RA LI++A L G
Sbjct: 557 EEVEWIKFNVGMNGYYIVHYEDDGWDSLTGLLKG--THTAVSSNDRASLINNAFQLVSIG 614
Query: 307 LLDYKIALDVTAYLQYETELVP 328
L + ALD++ YL++ETE++P
Sbjct: 615 KLSIEKALDLSLYLKHETEIMP 636
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 15/23 (65%), Positives = 21/23 (91%)
Query: 92 EKMDVETIMNTWTLQTGFPVIRV 114
E++DV+T+MNTWTLQ GFP+I +
Sbjct: 477 ERVDVKTMMNTWTLQRGFPLITI 499
>pdb|3QNF|A Chain A, Crystal Structure Of The Open State Of Human Endoplasmic
Reticulum Aminopeptidase 1 Erap1
pdb|3QNF|B Chain B, Crystal Structure Of The Open State Of Human Endoplasmic
Reticulum Aminopeptidase 1 Erap1
pdb|3QNF|C Chain C, Crystal Structure Of The Open State Of Human Endoplasmic
Reticulum Aminopeptidase 1 Erap1
Length = 954
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 48/82 (58%), Gaps = 2/82 (2%)
Query: 247 ESDDWIIFNIQQTGYYRVLYDEKNWYLIIATLRNSTTYNTIHLLNRAQLIDDAMNLARAG 306
E +WI FN+ GYY V Y++ W + L+ T+ + +RA LI++A L G
Sbjct: 599 EEVEWIKFNVGMNGYYIVHYEDDGWDSLTGLLKG--THTAVSSNDRASLINNAFQLVSIG 656
Query: 307 LLDYKIALDVTAYLQYETELVP 328
L + ALD++ YL++ETE++P
Sbjct: 657 KLSIEKALDLSLYLKHETEIMP 678
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 15/23 (65%), Positives = 20/23 (86%)
Query: 92 EKMDVETIMNTWTLQTGFPVIRV 114
E +DV+T+MNTWTLQ GFP+I +
Sbjct: 519 EGVDVKTMMNTWTLQKGFPLITI 541
>pdb|2YD0|A Chain A, Crystal Structure Of The Soluble Domain Of Human
Endoplasmic Reticulum Aminopeptidase 1 Erap1
Length = 897
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 48/82 (58%), Gaps = 2/82 (2%)
Query: 247 ESDDWIIFNIQQTGYYRVLYDEKNWYLIIATLRNSTTYNTIHLLNRAQLIDDAMNLARAG 306
E +WI FN+ GYY V Y++ W + L+ T+ + +RA LI++A L G
Sbjct: 548 EEVEWIKFNVGMNGYYIVHYEDDGWDSLTGLLKG--THTAVSSNDRASLINNAFQLVSIG 605
Query: 307 LLDYKIALDVTAYLQYETELVP 328
L + ALD++ YL++ETE++P
Sbjct: 606 KLSIEKALDLSLYLKHETEIMP 627
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 15/23 (65%), Positives = 20/23 (86%)
Query: 92 EKMDVETIMNTWTLQTGFPVIRV 114
E +DV+T+MNTWTLQ GFP+I +
Sbjct: 468 EGVDVKTMMNTWTLQKGFPLITI 490
>pdb|3RJO|A Chain A, Crystal Structure Of Erap1 Peptide Binding Domain
Length = 419
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 48/82 (58%), Gaps = 2/82 (2%)
Query: 247 ESDDWIIFNIQQTGYYRVLYDEKNWYLIIATLRNSTTYNTIHLLNRAQLIDDAMNLARAG 306
E +WI FN+ GYY V Y++ W + L+ T+ + +RA LI++A L G
Sbjct: 65 EEVEWIKFNVGMNGYYIVHYEDDGWDSLTGLLKG--THTAVSSNDRASLINNAFQLVSIG 122
Query: 307 LLDYKIALDVTAYLQYETELVP 328
L + ALD++ YL++ETE++P
Sbjct: 123 KLSIEKALDLSLYLKHETEIMP 144
>pdb|3SE6|A Chain A, Crystal Structure Of The Human Endoplasmic Reticulum
Aminopeptidase 2
pdb|3SE6|B Chain B, Crystal Structure Of The Human Endoplasmic Reticulum
Aminopeptidase 2
Length = 967
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 47/95 (49%), Gaps = 5/95 (5%)
Query: 247 ESDDWIIFNIQQTGYYRVLYDEKNWYLIIATLRNSTTYNTIHLLNRAQLIDDAMNLARAG 306
E W+ FN+ GYY V Y+ W +I L + T + +R LI D L AG
Sbjct: 616 EKTSWVKFNVDSNGYYIVHYEGHGWDQLITQLNQNHT--LLRPKDRVGLIHDVFQLVGAG 673
Query: 307 LLDYKIALDVTAYLQYETELVPWRSAMQALGYIEG 341
L ALD+T YLQ+ET P + ++ L Y+E
Sbjct: 674 RLTLDKALDMTYYLQHETS-SP--ALLEGLSYLES 705
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 19/79 (24%)
Query: 58 GLQKYIKKKAMGSSTQAELWAFLTNAGHE-------------------MRTLPEKMDVET 98
G+ +Y+KK + ++ +LW+ L+N+ E + L E +V+
Sbjct: 477 GIIQYLKKFSYRNAKNDDLWSSLSNSCLESDFTSGGVCHSDPKMTSNMLAFLGENAEVKE 536
Query: 99 IMNTWTLQTGFPVIRVARD 117
+M TWTLQ G P++ V +D
Sbjct: 537 MMTTWTLQKGIPLLVVKQD 555
>pdb|4E36|A Chain A, Crystal Structure Of The Human Endoplasmic Reticulum
Aminopeptidase 2 Variant N392k
pdb|4E36|B Chain B, Crystal Structure Of The Human Endoplasmic Reticulum
Aminopeptidase 2 Variant N392k
Length = 967
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 47/95 (49%), Gaps = 5/95 (5%)
Query: 247 ESDDWIIFNIQQTGYYRVLYDEKNWYLIIATLRNSTTYNTIHLLNRAQLIDDAMNLARAG 306
E W+ FN+ GYY V Y+ W +I L + T + +R LI D L AG
Sbjct: 616 EKTSWVKFNVDSNGYYIVHYEGHGWDQLITQLNQNHT--LLRPKDRVGLIHDVFQLVGAG 673
Query: 307 LLDYKIALDVTAYLQYETELVPWRSAMQALGYIEG 341
L ALD+T YLQ+ET P + ++ L Y+E
Sbjct: 674 RLTLDKALDMTYYLQHETS-SP--ALLEGLSYLES 705
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 19/79 (24%)
Query: 58 GLQKYIKKKAMGSSTQAELWAFLTNAGHE-------------------MRTLPEKMDVET 98
G+ +Y+KK + ++ +LW+ L+N+ E + L E +V+
Sbjct: 477 GIIQYLKKFSYRNAKNDDLWSSLSNSCLESDFTSGGVCHSDPKMTSNMLAFLGENAEVKE 536
Query: 99 IMNTWTLQTGFPVIRVARD 117
+M TWTLQ G P++ V +D
Sbjct: 537 MMTTWTLQKGIPLLVVKQD 555
>pdb|3Q7J|A Chain A, Engineered Thermoplasma Acidophilum F3 Factor Mimics Human
Aminopeptidase N (Apn) As A Target For Anticancer Drug
Development
pdb|3Q7J|B Chain B, Engineered Thermoplasma Acidophilum F3 Factor Mimics Human
Aminopeptidase N (Apn) As A Target For Anticancer Drug
Development
Length = 780
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 6/69 (8%)
Query: 241 QEDLNAESDDWIIFNIQQTGYYRVLYDEKNWYLIIATLRNSTTYNTIHLLNRAQLIDDAM 300
+++ + E+D I N G+YRVLYD+ + ++ R+ + L+R L+DD
Sbjct: 463 EDEASIEADGLIKINADSAGFYRVLYDDATFSDVMGHYRD------LSPLDRIGLVDDLF 516
Query: 301 NLARAGLLD 309
+G +D
Sbjct: 517 AFLLSGHID 525
Score = 31.6 bits (70), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 14/63 (22%), Positives = 30/63 (47%), Gaps = 8/63 (12%)
Query: 55 LKLGLQKYIKKKAMGSSTQAELWAFLTNAGHEMRTLPEKMDVETIMNTWTLQTGFPVIRV 114
+ G+ KY+ G++ ++LW + + + V+ +M W G+PVI++
Sbjct: 370 FRKGISKYLNDHKFGNAEGSDLWTAIEDVSGK--------PVKRVMEYWIKNPGYPVIKL 421
Query: 115 ARD 117
R+
Sbjct: 422 KRN 424
>pdb|1Z1W|A Chain A, Crystal Structures Of The Tricorn Interacting Facor F3
From Thermoplasma Acidophilum, A Zinc Aminopeptidase In
Three Different Conformations
pdb|1Z5H|A Chain A, Crystal Structures Of The Tricorn Interacting Factor F3
From Thermoplasma Acidophilum
pdb|1Z5H|B Chain B, Crystal Structures Of The Tricorn Interacting Factor F3
From Thermoplasma Acidophilum
Length = 780
Score = 36.2 bits (82), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 6/69 (8%)
Query: 241 QEDLNAESDDWIIFNIQQTGYYRVLYDEKNWYLIIATLRNSTTYNTIHLLNRAQLIDDAM 300
+++ + E+D I N G+YRVLYD+ + ++ R+ + L+R L+DD
Sbjct: 463 EDEASIEADGLIKINADSAGFYRVLYDDATFSDVMGHYRD------LSPLDRIGLVDDLF 516
Query: 301 NLARAGLLD 309
+G +D
Sbjct: 517 AFLLSGHID 525
Score = 31.6 bits (70), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 14/63 (22%), Positives = 30/63 (47%), Gaps = 8/63 (12%)
Query: 55 LKLGLQKYIKKKAMGSSTQAELWAFLTNAGHEMRTLPEKMDVETIMNTWTLQTGFPVIRV 114
+ G+ KY+ G++ ++LW + + + V+ +M W G+PVI++
Sbjct: 370 FRKGISKYLNDHKFGNAEGSDLWTAIEDVSGK--------PVKRVMEYWIKNPGYPVIKL 421
Query: 115 ARD 117
R+
Sbjct: 422 KRN 424
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,260,757
Number of Sequences: 62578
Number of extensions: 400920
Number of successful extensions: 759
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 715
Number of HSP's gapped (non-prelim): 31
length of query: 343
length of database: 14,973,337
effective HSP length: 100
effective length of query: 243
effective length of database: 8,715,537
effective search space: 2117875491
effective search space used: 2117875491
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)