Query         psy12534
Match_columns 343
No_of_seqs    159 out of 1318
Neff          6.2 
Searched_HMMs 46136
Date          Fri Aug 16 21:46:45 2013
Command       hhsearch -i /work/01045/syshi/Psyhhblits/psy12534.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12534hhsearch_cdd -cpu 12 -v 0 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 KOG1046|consensus              100.0 2.7E-47 5.9E-52  411.3  24.5  244    9-341   390-634 (882)
  2 TIGR02412 pepN_strep_liv amino 100.0 1.2E-41 2.6E-46  366.3  28.3  244   10-342   354-602 (831)
  3 COG0308 PepN Aminopeptidase N   99.9 1.9E-26 4.1E-31  249.3  24.7  224   11-323   376-600 (859)
  4 TIGR02414 pepN_proteo aminopep  99.9 7.1E-20 1.5E-24  197.6  23.4  199   12-296   352-564 (863)
  5 PRK14015 pepN aminopeptidase N  99.8 3.3E-19 7.1E-24  192.9  25.3  201   12-298   365-578 (875)
  6 PF11838 ERAP1_C:  ERAP1-like C  99.8   1E-18 2.3E-23  167.3   7.8   88  251-342     1-89  (324)
  7 TIGR02411 leuko_A4_hydro leuko  99.5 1.5E-14 3.3E-19  151.5   7.3  101   12-117   348-453 (601)
  8 KOG1047|consensus               97.4 0.00033 7.2E-09   72.2   6.7   84   25-114   372-459 (613)
  9 PF13485 Peptidase_MA_2:  Pepti  60.9     4.9 0.00011   32.2   1.5   34   27-62     94-128 (128)
 10 PF12651 RHH_3:  Ribbon-helix-h  48.2      19  0.0004   25.0   2.5   37   21-67      8-44  (44)
 11 PF06738 DUF1212:  Protein of u  26.5 1.7E+02  0.0037   25.9   5.8   46  290-335    64-110 (193)
 12 PF06743 FAST_1:  FAST kinase-l  26.0      52  0.0011   24.8   2.0   49  260-313     7-59  (71)
 13 PF11940 DUF3458:  Domain of un  20.2 8.7E+02   0.019   24.4  10.0   64  203-270    21-87  (367)

No 1  
>KOG1046|consensus
Probab=100.00  E-value=2.7e-47  Score=411.28  Aligned_cols=244  Identities=36%  Similarity=0.615  Sum_probs=217.1

Q ss_pred             ccccccccccccCCchhHhhhcccccccCCchhHHHHHHhh-hcHHHHHHHHHHHHHHcCCCCCChHHHHHHHHHhhhcc
Q psy12534          9 YLLVWEPKTYDVKFLVPIRVVLVQLSLSCELPKNHLRATGS-WQSTVLKLGLQKYIKKKAMGSSTQAELWAFLTNAGHEM   87 (343)
Q Consensus         9 ~~~~~~pi~~~v~~~~~i~~~fd~isy~kg~~~~vlrMl~~-lGee~F~~Gl~~YLk~~~y~Na~~~DLw~aL~~~~~~~   87 (343)
                      -+...|||..+|.++.+|.++||.|+|.||  ++|+|||+. +|+++|++||+.||++|+|+||+++|||++|+...   
T Consensus       390 ~l~~shpi~~~v~~~~ei~e~fd~i~Y~KG--asvlRML~~~lGe~~F~~gi~~yL~~~~y~na~~~DLw~~l~~~~---  464 (882)
T KOG1046|consen  390 ALASSHPISVPVESPSEIDEIFDEISYQKG--ASVLRMLESLLGEEVFRKGLRSYLKKHQYSNAKTEDLWDALEEGS---  464 (882)
T ss_pred             cccccCCeeeecCCcchhhhhhhhhhhhHH--HHHHHHHHHHHCHHHHHHHHHHHHHHhccCCCCchhHHHHHhccC---
Confidence            356899999999999999999999999999  999999997 79999999999999999999999999999999433   


Q ss_pred             CCCCCCCCHHHHHHHhhcCCCCcEEEEEEecCCCeEEEEEeecCCccceeeeccccccccCCCCCCCccccccccchhhh
Q psy12534         88 RTLPEKMDVETIMNTWTLQTGFPVIRVARDYDAGSAVVKQVRGLGFTLIIIVLINTARTELKGPFTPAVGYHYYGAQELR  167 (343)
Q Consensus        88 ~~~~~~~~v~~~m~~W~~Q~GyPvV~V~~~~~~~~i~l~Q~rf~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (343)
                           +.+|+++|++|+.|+|||+|+|+++++  .++++|+||        +..+.  .+                    
T Consensus       465 -----~~~v~~~M~~Wt~Q~G~Pvv~V~~~~~--~~~l~Q~rf--------~~~~~--~~--------------------  507 (882)
T KOG1046|consen  465 -----GLDVSELMDTWTKQMGYPVVTVERNGD--SLTLTQERF--------LSDPD--PS--------------------  507 (882)
T ss_pred             -----CCCHHHHHhhhhcCCCCceEEEEecCC--EEEEehhhh--------ccCCC--cc--------------------
Confidence                 799999999999999999999999854  899999999        55332  11                    


Q ss_pred             hccccCCCCCccccCCCcccccCCccccccccCCCCCCceEEEEEEEEeCCCCCcccccceEEeecCCcceEEeccCCCC
Q psy12534        168 RDLTTRNRPNFRVTKPSHWLRAEPNLTIKQEDLNAESDDWIIFNIQVATRNRPNFRVTKPFHWLRAEPNLTIKQEDLNAE  247 (343)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~I~Pit~~~~~~~~~~~~~~~~wl~~~~~~~i~l~~~~~~  247 (343)
                                                        ..++.|+| |++|.+.+.+.+    +..|+..+... +.++    .
T Consensus       508 ----------------------------------~~~~~w~i-Pl~~~~~~~~~~----~~~~~~~~~~~-~~l~----~  543 (882)
T KOG1046|consen  508 ----------------------------------EDNYLWWI-PLTYTTSGSGSV----PKFWLSSKSTT-IKLP----E  543 (882)
T ss_pred             ----------------------------------ccCcccce-eEEEEcCCCCcc----ceeeecCCCcc-eecC----C
Confidence                                              16789999 999998776532    57888877643 4443    2


Q ss_pred             CCCeEEEccCceeEEEEecCHhhHHHHHHHHhcCCCCCCCCHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHhcccCCChh
Q psy12534        248 SDDWIIFNIQQTGYYRVLYDEKNWYLIIATLRNSTTYNTIHLLNRAQLIDDAMNLARAGLLDYKIALDVTAYLQYETELV  327 (343)
Q Consensus       248 ~~~wi~~N~~~~GyYRV~YD~~~w~~L~~~L~~~~n~~~i~~~~Ra~Li~D~f~la~ag~l~~~~~L~l~~yL~~E~~~~  327 (343)
                      ..+||++|.++.|||||+||+++|+.|+++|.  . +..++..+|++||+|+|+|+++|+++++.+|+++.||.+|++|.
T Consensus       544 ~~~wi~~N~~~~g~yRV~Yd~~~w~~l~~~l~--~-~~~~~~~~Ra~li~D~~~la~~~~~~~~~~l~l~~~l~~e~~~~  620 (882)
T KOG1046|consen  544 SDQWIKVNLEQTGYYRVNYDDENWALLIEQLK--N-HESLSVIDRAQLINDAFALARAGRLPYSIALNLISYLKNETDYV  620 (882)
T ss_pred             CCeEEEEeCCcceEEEEEeCHHHHHHHHHHHh--h-cCccCHhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhcccccc
Confidence            33799999999999999999999999999997  4 89999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHh
Q psy12534        328 PWRSAMQALGYIEG  341 (343)
Q Consensus       328 ~w~~~~~~L~~i~~  341 (343)
                      ||..+...|..+..
T Consensus       621 p~~~~~~~l~~~~~  634 (882)
T KOG1046|consen  621 PWSAAIRSLYKLHS  634 (882)
T ss_pred             hHHHHHHHHHHHhh
Confidence            99999888877653


No 2  
>TIGR02412 pepN_strep_liv aminopeptidase N, Streptomyces lividans type. This family is a subset of the members of the zinc metallopeptidase family M1 (pfam01433), with a single member characterized in Streptomyces lividans 66 and designated aminopeptidase N. The spectrum of activity may differ somewhat from the aminopeptidase N clade of E. coli and most other Proteobacteria, well separated phylogenetically within the M1 family. The M1 family also includes leukotriene A-4 hydrolase/aminopeptidase (with a bifunctional active site).
Probab=100.00  E-value=1.2e-41  Score=366.27  Aligned_cols=244  Identities=18%  Similarity=0.181  Sum_probs=199.2

Q ss_pred             cccccccccccCCchhHhhhcccccccCCchhHHHHHHhh-hcHHHHHHHHHHHHHHcCCCCCChHHHHHHHHHhhhccC
Q psy12534         10 LLVWEPKTYDVKFLVPIRVVLVQLSLSCELPKNHLRATGS-WQSTVLKLGLQKYIKKKAMGSSTQAELWAFLTNAGHEMR   88 (343)
Q Consensus        10 ~~~~~pi~~~v~~~~~i~~~fd~isy~kg~~~~vlrMl~~-lGee~F~~Gl~~YLk~~~y~Na~~~DLw~aL~~~~~~~~   88 (343)
                      +..+|||..+|.++.+|.+.||.|+|.||  ++|||||+. +|+++|++||+.||++|+|+|++++|||++|++++    
T Consensus       354 ~~~t~Pi~~~~~~~~~~~~~fd~isY~KG--a~vL~mL~~~lGee~F~~glr~Yl~~~~~~nat~~Dl~~~l~~~s----  427 (831)
T TIGR02412       354 LPTTHPIVADVADLADALSNFDGITYAKG--ASVLKQLVAWVGEEAFFAGVNAYFKRHAFGNATLDDLIDSLAKAS----  427 (831)
T ss_pred             ccCCCCCccCCCCHHHHHHhccCccchhH--HHHHHHHHHHHCHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh----
Confidence            44689999999999999999999999999  999999997 79999999999999999999999999999999998    


Q ss_pred             CCCCCCCHHHHHHHhhcCCCCcEEEEEEecCCCeEEEEEeecCCccceeeeccccccccCCCCCCCccccccccchhhhh
Q psy12534         89 TLPEKMDVETIMNTWTLQTGFPVIRVARDYDAGSAVVKQVRGLGFTLIIIVLINTARTELKGPFTPAVGYHYYGAQELRR  168 (343)
Q Consensus        89 ~~~~~~~v~~~m~~W~~Q~GyPvV~V~~~~~~~~i~l~Q~rf~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (343)
                          +.+++.||++|+.|+|||+|+|++.++++.++ +|  +        .. .. .                       
T Consensus       428 ----g~dl~~~~~~W~~~~G~P~l~v~~~~~~~~~~-~~--~--------~~-~~-~-----------------------  467 (831)
T TIGR02412       428 ----GRDLSAWSDAWLETAGVNTLTPEITTDGGVVS-AL--Y--------PE-SS-G-----------------------  467 (831)
T ss_pred             ----CCCHHHHHHHHHcCCCCceEEEEEEECCCeEE-EE--E--------Ee-cC-C-----------------------
Confidence                78999999999999999999999887666544 11  2        11 00 0                       


Q ss_pred             ccccCCCCCccccCCCcccccCCccccccccCCCCCCceEEEEEEEEeCCCCCccc-ccceEEeecCCcceEEecc-CCC
Q psy12534        169 DLTTRNRPNFRVTKPSHWLRAEPNLTIKQEDLNAESDDWIIFNIQVATRNRPNFRV-TKPFHWLRAEPNLTIKQED-LNA  246 (343)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~I~Pit~~~~~~~~~~~-~~~~~wl~~~~~~~i~l~~-~~~  246 (343)
                                                        ....|.| ||++....+..... ....+++.....   .+.. ...
T Consensus       468 ----------------------------------~~~~~~i-p~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~  509 (831)
T TIGR02412       468 ----------------------------------PPRPHRI-AIGLYDLDRDDLRRTTLVPLTISGERT---AVPQLVGK  509 (831)
T ss_pred             ----------------------------------CCCCeeE-EEeeeecCCCcceeeeEEEEEEecCce---eehhhcCC
Confidence                                              1145899 99986543332211 111345544332   1211 012


Q ss_pred             CCCCeEEEccCceeEEEEecCHhhHHHHHHHHhcCCCCCCCCHHhHHHHHHHHHHHHHcCCCCHHHHHHHH-HhcccCCC
Q psy12534        247 ESDDWIIFNIQQTGYYRVLYDEKNWYLIIATLRNSTTYNTIHLLNRAQLIDDAMNLARAGLLDYKIALDVT-AYLQYETE  325 (343)
Q Consensus       247 ~~~~wi~~N~~~~GyYRV~YD~~~w~~L~~~L~~~~n~~~i~~~~Ra~Li~D~f~la~ag~l~~~~~L~l~-~yL~~E~~  325 (343)
                      .+++||++|.++.|||||+||+++|+.|+++|.     ...++.+|++||+|+|+++++|.++++++|+++ .||++|++
T Consensus       510 ~~~~~v~~N~~~~gyyrv~yd~~~~~~l~~~l~-----~~~~~~~R~~l~~d~~~~~~~g~~~~~~~l~l~~~~l~~E~~  584 (831)
T TIGR02412       510 RAPALVLLNDDDLTYAKVRLDPTSFDTVLAALS-----KLPDPLSRAVVWASLWDSVRDGELSPDDYLSTVFAHVPSETD  584 (831)
T ss_pred             CCCCEEEEeCCCcEEEEEECCHHHHHHHHHHhh-----hCCChhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHhccCCCc
Confidence            366899999999999999999999999999995     233799999999999999999999999999976 79999999


Q ss_pred             hhHHHHHHHHHH-HHHhc
Q psy12534        326 LVPWRSAMQALG-YIEGQ  342 (343)
Q Consensus       326 ~~~w~~~~~~L~-~i~~l  342 (343)
                      +.||..++..+. .+..+
T Consensus       585 ~~v~~~~~~~l~~~~~~~  602 (831)
T TIGR02412       585 YAVVQQVLSQLLRAVAAQ  602 (831)
T ss_pred             hHHHHHHHHHHHHHHHHH
Confidence            999999999998 77654


No 3  
>COG0308 PepN Aminopeptidase N [Amino acid transport and metabolism]
Probab=99.95  E-value=1.9e-26  Score=249.27  Aligned_cols=224  Identities=21%  Similarity=0.252  Sum_probs=182.5

Q ss_pred             ccccccccccCCchhHhhhcccccccCCchhHHHHHHhh-hcHHHHHHHHHHHHHHcCCCCCChHHHHHHHHHhhhccCC
Q psy12534         11 LVWEPKTYDVKFLVPIRVVLVQLSLSCELPKNHLRATGS-WQSTVLKLGLQKYIKKKAMGSSTQAELWAFLTNAGHEMRT   89 (343)
Q Consensus        11 ~~~~pi~~~v~~~~~i~~~fd~isy~kg~~~~vlrMl~~-lGee~F~~Gl~~YLk~~~y~Na~~~DLw~aL~~~~~~~~~   89 (343)
                      -.+|||+.++.+|.||++.||.|+|.||  ++|||||+. +|++.|++||+.|+++|+|+|++.+|||+++.+++     
T Consensus       376 ~~~hPi~~~~~~~~ei~~~fD~i~Y~KG--s~vlrml~~~lG~e~F~kgl~~yf~~h~~~~~~~~Dl~~a~~~~s-----  448 (859)
T COG0308         376 PSSHPIRVDVYDPKEINDFFDAIVYEKG--ASVLRMLETLLGEEAFRKGLSLYFKRHAGGNATTMDLWKALEDAS-----  448 (859)
T ss_pred             cccCCcccCCCCccchhhhcchhhcchh--HHHHHHHHHHHCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHh-----
Confidence            3569999999999999999999999999  999999997 79999999999999999999999999999999999     


Q ss_pred             CCCCCCHHHHHHHhhcCCCCcEEEEEEecCCCeEEEEEeecCCccceeeeccccccccCCCCCCCccccccccchhhhhc
Q psy12534         90 LPEKMDVETIMNTWTLQTGFPVIRVARDYDAGSAVVKQVRGLGFTLIIIVLINTARTELKGPFTPAVGYHYYGAQELRRD  169 (343)
Q Consensus        90 ~~~~~~v~~~m~~W~~Q~GyPvV~V~~~~~~~~i~l~Q~rf~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (343)
                         |.+++.+|+.|+.|+|||+|.|+..+++ .++|+|.+|        +..+   .                       
T Consensus       449 ---g~dl~~~~~~w~~q~G~P~l~v~~~~~~-~~~l~~~q~--------~~~~---~-----------------------  490 (859)
T COG0308         449 ---GKDLSAFFESWLSQAGYPVLTVSVRYDD-FFKLTQKQF--------TPPG---Q-----------------------  490 (859)
T ss_pred             ---CCcHHHHHHHHHhCCCCCceeeeeeccc-cEEEEEEEe--------ccCC---C-----------------------
Confidence               7899999999999999999999988654 788999999        4311   0                       


Q ss_pred             cccCCCCCccccCCCcccccCCccccccccCCCCCCceEEEEEEEEeCCCCCcccccceEEeecCCcceEEeccCCCCCC
Q psy12534        170 LTTRNRPNFRVTKPSHWLRAEPNLTIKQEDLNAESDDWIIFNIQVATRNRPNFRVTKPFHWLRAEPNLTIKQEDLNAESD  249 (343)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~I~Pit~~~~~~~~~~~~~~~~wl~~~~~~~i~l~~~~~~~~  249 (343)
                                                      .....|.| |+.+.......   .....+....  .++.++......-
T Consensus       491 --------------------------------~~~~~~~i-Pl~~~~~~~~~---~~~~~~~~~~--~t~~~~~~~~~~~  532 (859)
T COG0308         491 --------------------------------EEKRPWPI-PLAIKLLDGGG---VKVLLLTEGE--QTVTFELVGIPPF  532 (859)
T ss_pred             --------------------------------ccCceeee-ccEEEecCCCC---ceeeeeeccc--eEEEEecccCCcc
Confidence                                            04578999 99998764431   1112222222  2344442111122


Q ss_pred             CeEEEccCceeEEEEecCHhhHHHHHHHHhcCCCCCCCCHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHhcccC
Q psy12534        250 DWIIFNIQQTGYYRVLYDEKNWYLIIATLRNSTTYNTIHLLNRAQLIDDAMNLARAGLLDYKIALDVTAYLQYE  323 (343)
Q Consensus       250 ~wi~~N~~~~GyYRV~YD~~~w~~L~~~L~~~~n~~~i~~~~Ra~Li~D~f~la~ag~l~~~~~L~l~~yL~~E  323 (343)
                      .-+++|....++|++.|+.+.+..++...      ..++...|+.++.|..++..+|..+...++..+...-++
T Consensus       533 ~~~~~~~~~~~~~~~~y~~~~l~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  600 (859)
T COG0308         533 PSLKVNDSAPVFYRVDYSDQSLSKLLQHD------PRLEAAQRLALVADRRALTAAGKGSAEDKLALVSRAFNA  600 (859)
T ss_pred             ceeeccCCccceEEEecCHHHHHHHHhhh------hhhhHHHHHhhhhhHHHHHHhcccchhHHHHHHHHHhhh
Confidence            36889999999999999999999887654      378999999999999999999999999988877644433


No 4  
>TIGR02414 pepN_proteo aminopeptidase N, Escherichia coli type. The M1 family of zinc metallopeptidases contains a number of distinct, well-separated clades of proteins with aminopeptidase activity. Several are designated aminopeptidase N, EC 3.4.11.2, after the Escherichia coli enzyme, suggesting a similar activity profile. This family consists of all aminopeptidases closely related to E. coli PepN and presumed to have similar (not identical) function. Nearly all are found in Proteobacteria, but members are found also in Cyanobacteria, plants, and apicomplexan parasites. This family differs greatly in sequence from the family of aminopeptidases typified by Streptomyces lividans PepN (TIGR02412), from the membrane bound aminopeptidase N family in animals, etc.
Probab=99.85  E-value=7.1e-20  Score=197.62  Aligned_cols=199  Identities=17%  Similarity=0.152  Sum_probs=141.1

Q ss_pred             cccccccccCCchhHhhhcccccccCCchhHHHHHHhh-hcHHHHHHHHHHHHHHcCCCCCChHHHHHHHHHhhhccCCC
Q psy12534         12 VWEPKTYDVKFLVPIRVVLVQLSLSCELPKNHLRATGS-WQSTVLKLGLQKYIKKKAMGSSTQAELWAFLTNAGHEMRTL   90 (343)
Q Consensus        12 ~~~pi~~~v~~~~~i~~~fd~isy~kg~~~~vlrMl~~-lGee~F~~Gl~~YLk~~~y~Na~~~DLw~aL~~~~~~~~~~   90 (343)
                      .+|||..  +...+|...||.++|.||  ++|||||+. +|++.|++||+.|+++|+|+|++++|||.+|++++      
T Consensus       352 ~~~Pi~~--~~~~~i~~~y~~i~Y~KG--A~vLrML~~~LGee~F~~gLr~Yl~r~~~~~at~~Df~~ale~as------  421 (863)
T TIGR02414       352 MAHPVRP--ESYVEINNFYTATVYEKG--AEVIRMLHTLLGEEGFRKGMDLYFSRHDGQAVTCEDFVAAMEDAS------  421 (863)
T ss_pred             cCCCCCC--cchhhHHhccchHHhHHH--HHHHHHHHHHhCHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh------
Confidence            4688764  456789999999999999  999999997 79999999999999999999999999999999998      


Q ss_pred             CCCCCHHHHHHHhhcCCCCcEEEEEEecCCC----eEEEEEeecCCccceeeeccccccccCCCCCCCccccccccchhh
Q psy12534         91 PEKMDVETIMNTWTLQTGFPVIRVARDYDAG----SAVVKQVRGLGFTLIIIVLINTARTELKGPFTPAVGYHYYGAQEL  166 (343)
Q Consensus        91 ~~~~~v~~~m~~W~~Q~GyPvV~V~~~~~~~----~i~l~Q~rf~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (343)
                        +.++..|+ +|+.|+|+|+|+|+++|+.+    +++++|...           +++..                    
T Consensus       422 --g~dL~~f~-~W~~q~G~P~v~v~~~yd~~~~~~~lt~~Q~~~-----------~~~~~--------------------  467 (863)
T TIGR02414       422 --GRDLNQFR-RWYSQAGTPVLEVKENYDAAKKTYTLTVRQSTP-----------PTPGQ--------------------  467 (863)
T ss_pred             --CCCHHHHH-HHHcCCCCceeEEEEEEcCCCCEEEEEEEEeCC-----------CCCCC--------------------
Confidence              78999985 89999999999999987543    355555543           11000                    


Q ss_pred             hhccccCCCCCccccCCCcccccCCccccccccCCCCCCceEEEEEEEEeC--CCCCcc----c---ccceEEeecCCcc
Q psy12534        167 RRDLTTRNRPNFRVTKPSHWLRAEPNLTIKQEDLNAESDDWIIFNIQVATR--NRPNFR----V---TKPFHWLRAEPNL  237 (343)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~I~Pit~~~~--~~~~~~----~---~~~~~wl~~~~~~  237 (343)
                                                         .....|.| ||.+..-  .+.+..    .   ....++|+..+ +
T Consensus       468 -----------------------------------~~~~~~~i-Pl~i~l~~~~G~~~~~~~~~~~~~~~~l~l~~~~-~  510 (863)
T TIGR02414       468 -----------------------------------TEKKPLHI-PIAVGLLGPNGRKLMLSLDGERDTTRVLELTEAE-Q  510 (863)
T ss_pred             -----------------------------------CcCCceEE-EEEEEEEeCCCCEeeecccCCCCcceEEEEccCE-E
Confidence                                               03467999 9998652  222110    0   01245566554 4


Q ss_pred             eEEeccCCCCCCCeEEEccCceeEEEEecCHhhHHHHHHHHhcCCCCCCCCHHhHHHHH
Q psy12534        238 TIKQEDLNAESDDWIIFNIQQTGYYRVLYDEKNWYLIIATLRNSTTYNTIHLLNRAQLI  296 (343)
Q Consensus       238 ~i~l~~~~~~~~~wi~~N~~~~GyYRV~YD~~~w~~L~~~L~~~~n~~~i~~~~Ra~Li  296 (343)
                      ++.+++  .+....+-++.+.+.+-++.|+...= .|+..+.  .+.+.+.--+-+|-+
T Consensus       511 ~f~f~~--~~~~p~~sl~r~fsapv~l~~~~~~~-~l~~l~~--~d~d~~~r~~a~q~l  564 (863)
T TIGR02414       511 TFVFEG--IAEKPVPSLLRGFSAPVNLEYPYSDE-DLLLLLA--HDSDPFNRWEAGQRL  564 (863)
T ss_pred             EEEEcC--CCCCCeeeecCCCCceEEEeCCCCHH-HHHHHHh--hCCChhHHHHHHHHH
Confidence            577764  33344577889999999998876543 3344443  234444444444443


No 5  
>PRK14015 pepN aminopeptidase N; Provisional
Probab=99.84  E-value=3.3e-19  Score=192.88  Aligned_cols=201  Identities=14%  Similarity=0.167  Sum_probs=142.6

Q ss_pred             cccccccccCCchhHhhhcccccccCCchhHHHHHHhh-hcHHHHHHHHHHHHHHcCCCCCChHHHHHHHHHhhhccCCC
Q psy12534         12 VWEPKTYDVKFLVPIRVVLVQLSLSCELPKNHLRATGS-WQSTVLKLGLQKYIKKKAMGSSTQAELWAFLTNAGHEMRTL   90 (343)
Q Consensus        12 ~~~pi~~~v~~~~~i~~~fd~isy~kg~~~~vlrMl~~-lGee~F~~Gl~~YLk~~~y~Na~~~DLw~aL~~~~~~~~~~   90 (343)
                      .+|||..+  ...+|...||.++|.||  ++|||||+. +|++.|++||+.|+++|+|+|++++|||.+|++++      
T Consensus       365 ~a~pi~p~--~~~~i~~~f~~~~Y~KG--A~vLrMLr~~lGde~F~~gLr~Yl~~~~~~~at~~Df~~ale~as------  434 (875)
T PRK14015        365 MAHPVRPD--SYIEINNFYTATVYEKG--AEVIRMLHTLLGEEGFRKGMDLYFERHDGQAVTCEDFVAAMEDAS------  434 (875)
T ss_pred             cCCCCCCc--chhhHHhcccchhhhHH--HHHHHHHHHHhCHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh------
Confidence            35787632  45689999999999999  999999997 79999999999999999999999999999999998      


Q ss_pred             CCCCCHHHHHHHhhcCCCCcEEEEEEecC--CCe--EEEEEeecCCccceeeeccccccccCCCCCCCccccccccchhh
Q psy12534         91 PEKMDVETIMNTWTLQTGFPVIRVARDYD--AGS--AVVKQVRGLGFTLIIIVLINTARTELKGPFTPAVGYHYYGAQEL  166 (343)
Q Consensus        91 ~~~~~v~~~m~~W~~Q~GyPvV~V~~~~~--~~~--i~l~Q~rf~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (343)
                        +.++..|+ +|+.|+|+|+|+|+++|+  ++.  ++++|...           +++..                    
T Consensus       435 --g~DL~~f~-~W~~q~G~P~l~v~~~~d~~~~~~~ltl~Q~~~-----------~~~~~--------------------  480 (875)
T PRK14015        435 --GRDLSQFR-RWYSQAGTPRVTVSDEYDAAAGTYTLTLSQSTP-----------PTPGQ--------------------  480 (875)
T ss_pred             --CCCHHHHH-HHHcCCCCCeEEEEEEEcCCCCEEEEEEEEeCC-----------CCCCC--------------------
Confidence              78999986 899999999999999874  343  45555433           10000                    


Q ss_pred             hhccccCCCCCccccCCCcccccCCccccccccCCCCCCceEEEEEEEEe--CCCCCcc----c--ccceEEeecCCcce
Q psy12534        167 RRDLTTRNRPNFRVTKPSHWLRAEPNLTIKQEDLNAESDDWIIFNIQVAT--RNRPNFR----V--TKPFHWLRAEPNLT  238 (343)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~I~Pit~~~--~~~~~~~----~--~~~~~wl~~~~~~~  238 (343)
                                                         .....|.| ||.+..  ..+.+..    .  ....++|+..+ ++
T Consensus       481 -----------------------------------~~~~~~~i-Pl~i~l~~~~G~~~~~~~~~~~~~~~l~l~~~~-q~  523 (875)
T PRK14015        481 -----------------------------------PEKQPLHI-PVAIGLLDPDGKELPLQLEGEPVERVLELTEAE-QT  523 (875)
T ss_pred             -----------------------------------CCCceEEE-EEEEEEEcCCCceeeccccCCccceEEEEcCCe-eE
Confidence                                               03467999 999864  2222110    0  02356666655 45


Q ss_pred             EEeccCCCCCCCeEEEccCceeEEEEecCHhhHHHHHHHHhcCCCCCCCCHHhHHHHHHH
Q psy12534        239 IKQEDLNAESDDWIIFNIQQTGYYRVLYDEKNWYLIIATLRNSTTYNTIHLLNRAQLIDD  298 (343)
Q Consensus       239 i~l~~~~~~~~~wi~~N~~~~GyYRV~YD~~~w~~L~~~L~~~~n~~~i~~~~Ra~Li~D  298 (343)
                      +.+++  ......+-++.+.+.+-++.|+... +.|+.++.  .+.+.++.-+-+|-+..
T Consensus       524 f~f~~--~~~~p~~s~~r~fsapv~~~~~~~~-~~l~~l~~--~d~d~~~r~~a~q~l~~  578 (875)
T PRK14015        524 FTFEN--VAERPVPSLLRGFSAPVKLEYDYSD-EDLLFLMA--HDSDPFNRWEAGQRLAT  578 (875)
T ss_pred             EEEcC--CCCCceEEecCCCCCcEEEeCCCCH-HHHHHHHh--hCCChhHHHHHHHHHHH
Confidence            77774  3333347888999999999887544 33444444  34455555554544433


No 6  
>PF11838 ERAP1_C:  ERAP1-like C-terminal domain;  InterPro: IPR024571  This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=99.76  E-value=1e-18  Score=167.30  Aligned_cols=88  Identities=47%  Similarity=0.797  Sum_probs=79.8

Q ss_pred             eEEEccCceeEEEEecCHhhHHHHHHHHhcCCCCCCCCHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHhc-ccCCChhHH
Q psy12534        251 WIIFNIQQTGYYRVLYDEKNWYLIIATLRNSTTYNTIHLLNRAQLIDDAMNLARAGLLDYKIALDVTAYL-QYETELVPW  329 (343)
Q Consensus       251 wi~~N~~~~GyYRV~YD~~~w~~L~~~L~~~~n~~~i~~~~Ra~Li~D~f~la~ag~l~~~~~L~l~~yL-~~E~~~~~w  329 (343)
                      ||++|.+++|||||+||+++|+.|+++|.  .++  |++.+|++||+|+|+++++|+++++.+|+++.|+ ++|++|.||
T Consensus         1 wi~~N~~~~GyyRV~Yd~~~~~~l~~~L~--~~~--l~~~~R~~ll~D~~al~~~g~~~~~~~l~l~~~~~~~E~~~~vw   76 (324)
T PF11838_consen    1 WIKLNAGQTGYYRVNYDEENWDALIKQLQ--SNH--LSPLDRAQLLDDLFALARAGRLSYSDFLDLLEYLLPNETDYVVW   76 (324)
T ss_dssp             EEEESGGGSSSSEEEECTTHHHHHHHHHH--HHG--S-HHHHHHHHHHHHHHHHTTSS-HHHHHHHHGGG-GT--SHHHH
T ss_pred             CEEEeCCceEEEEEeCCHHHHHHHHHHHh--cCC--CCHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhccCCCchHHH
Confidence            89999999999999999999999999996  434  9999999999999999999999999999999999 999999999


Q ss_pred             HHHHHHHHHHHhc
Q psy12534        330 RSAMQALGYIEGQ  342 (343)
Q Consensus       330 ~~~~~~L~~i~~l  342 (343)
                      ..+++.|..+.++
T Consensus        77 ~~~~~~l~~l~~~   89 (324)
T PF11838_consen   77 STALSNLSSLRNR   89 (324)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999999854


No 7  
>TIGR02411 leuko_A4_hydro leukotriene A-4 hydrolase/aminopeptidase. Members of this family represent a distinctive subset within the zinc metallopeptidase family M1 (pfam01433). The majority of the members of pfam01433 are aminopeptidases, but the sequences in this family for which the function is known are leukotriene A-4 hydrolase. A dual epoxide hydrolase and aminopeptidase activity at the same active site is indicated. The physiological substrate for aminopeptidase activity is not known.
Probab=99.52  E-value=1.5e-14  Score=151.53  Aligned_cols=101  Identities=18%  Similarity=0.088  Sum_probs=84.0

Q ss_pred             cccccccccCCch--hHhhhcccccccCCchhHHHHHHhh-hc-HHHHHHHHHHHHHHcCCCCCChHHHHHHHHHhhhcc
Q psy12534         12 VWEPKTYDVKFLV--PIRVVLVQLSLSCELPKNHLRATGS-WQ-STVLKLGLQKYIKKKAMGSSTQAELWAFLTNAGHEM   87 (343)
Q Consensus        12 ~~~pi~~~v~~~~--~i~~~fd~isy~kg~~~~vlrMl~~-lG-ee~F~~Gl~~YLk~~~y~Na~~~DLw~aL~~~~~~~   87 (343)
                      ..||+...|.++.  ++...||.|+|.||  +++|+||+. +| ++.|++||+.|+++|+|+|++++|||++|.++..+.
T Consensus       348 ~~~~~~~~~~~~~~~dp~~~f~~i~Y~KG--a~~L~mL~~~lG~~~~F~~~lr~Yl~~~~~~s~~t~df~~~l~~~~~~~  425 (601)
T TIGR02411       348 EDPEYTKLVVDLKDNDPDDAFSSVPYEKG--FNFLFYLEQLLGGPAVFDPFLKHYFKKFAYKSLDTYQFKDALYEYFKDT  425 (601)
T ss_pred             CCCCCCcccccCCCCChhhhccccchhhH--HHHHHHHHHHhCCHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhc
Confidence            3567776666654  78899999999999  999999997 79 999999999999999999999999999999876321


Q ss_pred             CCCCCCCCHHHH-HHHhhcCCCCcEEEEEEe
Q psy12534         88 RTLPEKMDVETI-MNTWTLQTGFPVIRVARD  117 (343)
Q Consensus        88 ~~~~~~~~v~~~-m~~W~~Q~GyPvV~V~~~  117 (343)
                      +   .+.++..+ |+.|++|+|+|.+.++.+
T Consensus       426 ~---~~~~l~~~~~~~Wl~~~G~P~~~~~~~  453 (601)
T TIGR02411       426 G---KVDKLNAVDWDTWLYSPGLPPVKPNFD  453 (601)
T ss_pred             c---ccchhhhhhHHHHhcCCCCCCcCCCCC
Confidence            1   12355655 899999999999887643


No 8  
>KOG1047|consensus
Probab=97.39  E-value=0.00033  Score=72.15  Aligned_cols=84  Identities=20%  Similarity=0.192  Sum_probs=69.9

Q ss_pred             hHhhhcccccccCCchhHHHHHHhh-h-cHHHHHHHHHHHHHHcCCCCCChHHHHHHHHHhhhccCCCCCCCCH--HHHH
Q psy12534         25 PIRVVLVQLSLSCELPKNHLRATGS-W-QSTVLKLGLQKYIKKKAMGSSTQAELWAFLTNAGHEMRTLPEKMDV--ETIM  100 (343)
Q Consensus        25 ~i~~~fd~isy~kg~~~~vlrMl~~-l-Gee~F~~Gl~~YLk~~~y~Na~~~DLw~aL~~~~~~~~~~~~~~~v--~~~m  100 (343)
                      +=+.+|..+-|.||  ...|+-|+. + |++.|-.-|+.|+++|+|++.++.|+.++|-+...+.+    .+++  .-.+
T Consensus       372 dPDdafs~VpYeKG--~~ll~~Le~~lG~~~~Fd~FLr~Yv~kfa~ksI~t~dfld~Lye~fpe~k----k~dil~~vd~  445 (613)
T KOG1047|consen  372 DPDDAFSQVPYEKG--FALLFYLEQLLGDPTRFDPFLRAYVHKFAFKSILTQDFLDFLYEYFPELK----KKDILDEVDW  445 (613)
T ss_pred             ChHHhhhcCchhhh--hHHHHHHHHHhCChhhHHHHHHHHHHHhccceecHHHHHHHHHHhCcchh----hhhhhccccH
Confidence            34566888999999  999999998 5 59999999999999999999999999999999875422    1233  3378


Q ss_pred             HHhhcCCCCcEEEE
Q psy12534        101 NTWTLQTGFPVIRV  114 (343)
Q Consensus       101 ~~W~~Q~GyPvV~V  114 (343)
                      +.|++.+|+|-+.-
T Consensus       446 ~~Wl~~~G~Pp~~p  459 (613)
T KOG1047|consen  446 DLWLNSPGMPPPKP  459 (613)
T ss_pred             HHHhcCCCCCCCCC
Confidence            99999999997654


No 9  
>PF13485 Peptidase_MA_2:  Peptidase MA superfamily
Probab=60.89  E-value=4.9  Score=32.17  Aligned_cols=34  Identities=15%  Similarity=0.003  Sum_probs=27.3

Q ss_pred             hhhcccccccCCchhHHHHHHhh-hcHHHHHHHHHHH
Q psy12534         27 RVVLVQLSLSCELPKNHLRATGS-WQSTVLKLGLQKY   62 (343)
Q Consensus        27 ~~~fd~isy~kg~~~~vlrMl~~-lGee~F~~Gl~~Y   62 (343)
                      ...++...|.+|  ..++++|.. .|++.|++.++.|
T Consensus        94 ~~~~~~~~Y~~~--~~~~~~L~~~~G~~~~~~~l~~~  128 (128)
T PF13485_consen   94 SWEDDSLAYYQG--YLFVRFLEEKYGREKFKAFLREY  128 (128)
T ss_pred             cccccccHHHHH--HHHHHHHHHHHHHHHHHHHHHhC
Confidence            344555778888  899999986 7999999999876


No 10 
>PF12651 RHH_3:  Ribbon-helix-helix domain
Probab=48.24  E-value=19  Score=24.95  Aligned_cols=37  Identities=24%  Similarity=0.357  Sum_probs=28.0

Q ss_pred             CCchhHhhhcccccccCCchhHHHHHHhhhcHHHHHHHHHHHHHHcC
Q psy12534         21 KFLVPIRVVLVQLSLSCELPKNHLRATGSWQSTVLKLGLQKYIKKKA   67 (343)
Q Consensus        21 ~~~~~i~~~fd~isy~kg~~~~vlrMl~~lGee~F~~Gl~~YLk~~~   67 (343)
                      .-+.++...+|.+|-..|.+.|          +.+++||..||++|.
T Consensus         8 ~l~~el~~~L~~ls~~t~i~~S----------~Ll~eAle~~l~ky~   44 (44)
T PF12651_consen    8 SLDKELYEKLKELSEETGIPKS----------KLLREALEDYLEKYE   44 (44)
T ss_pred             ecCHHHHHHHHHHHHHHCCCHH----------HHHHHHHHHHHHhcC
Confidence            3466778888888888885543          346799999999874


No 11 
>PF06738 DUF1212:  Protein of unknown function (DUF1212);  InterPro: IPR010619 This entry represents a predicted domain found within a number of hypothetical proteins of unknown function found in eukaryotes, bacteria and archaea. Some of these sequences are predicted to be membrane proteins.
Probab=26.47  E-value=1.7e+02  Score=25.89  Aligned_cols=46  Identities=20%  Similarity=0.313  Sum_probs=38.1

Q ss_pred             HhHHHHHHHHHHHHHcCCCCHHHHHHHHHhcccCC-ChhHHHHHHHH
Q psy12534        290 LNRAQLIDDAMNLARAGLLDYKIALDVTAYLQYET-ELVPWRSAMQA  335 (343)
Q Consensus       290 ~~Ra~Li~D~f~la~ag~l~~~~~L~l~~yL~~E~-~~~~w~~~~~~  335 (343)
                      .+|..-+++...-...|.++++++.+-++-+.++. .|-+|..++..
T Consensus        64 l~~l~~v~~l~~~~~~~~~~~~ea~~~L~~I~~~~~~y~~~~~~l~~  110 (193)
T PF06738_consen   64 LDKLAAVNRLSRRIVAGQLSLEEAIERLDEIDREPPRYPPWLVILAA  110 (193)
T ss_pred             HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhCCCCCCHHHHHHHH
Confidence            46777777888888889999999999999999888 88888776543


No 12 
>PF06743 FAST_1:  FAST kinase-like protein, subdomain 1;  InterPro: IPR010622 This entry represents a conserved region of eukaryotic Fas-activated serine/threonine (FAST) kinases that contains several conserved leucine residues. FAST kinase is rapidly activated during Fas-mediated apoptosis, when it phosphorylates TIA-1, a nuclear RNA-binding protein that has been implicated as an effector of apoptosis []. Note that many family members are hypothetical proteins.; GO: 0004672 protein kinase activity
Probab=25.99  E-value=52  Score=24.83  Aligned_cols=49  Identities=16%  Similarity=0.182  Sum_probs=34.2

Q ss_pred             eEEEEecCHhhHHH----HHHHHhcCCCCCCCCHHhHHHHHHHHHHHHHcCCCCHHHH
Q psy12534        260 GYYRVLYDEKNWYL----IIATLRNSTTYNTIHLLNRAQLIDDAMNLARAGLLDYKIA  313 (343)
Q Consensus       260 GyYRV~YD~~~w~~----L~~~L~~~~n~~~i~~~~Ra~Li~D~f~la~ag~l~~~~~  313 (343)
                      .|.|.||.+.+.+.    +.+.|.     ..++..+=..+++=++.++..++.+.+-.
T Consensus         7 ~fa~LNy~P~~~~~f~~~~~~~L~-----~~l~~~~p~~ll~~v~Sl~~l~~~p~~~l   59 (71)
T PF06743_consen    7 PFARLNYQPPNAEEFFEKLIERLE-----SYLDEFSPEDLLDLVWSLCLLQRFPEDLL   59 (71)
T ss_pred             HHHhcCCCCCCHHHHHHHHHHHHH-----HhcccCCHHHHHHHHHHHHHHhhCCHHHH
Confidence            36788999887554    455564     33445555668888999999999886543


No 13 
>PF11940 DUF3458:  Domain of unknown function (DUF3458);  InterPro: IPR024601 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold:  Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases.   In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding.  Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain, which contains a conserved FSAPV sequence motif, is found in the C-terminal of alanyl aminopeptidases that belong to MEROPS peptidase family M1 (aminopeptidase N, clan MA). ; PDB: 3EBH_A 3EBG_A 3T8V_A 3Q44_A 3Q43_A 3EBI_A 3PUU_A 3B37_A 3B2P_A 3B3B_A ....
Probab=20.22  E-value=8.7e+02  Score=24.39  Aligned_cols=64  Identities=13%  Similarity=0.078  Sum_probs=29.4

Q ss_pred             CCCceEEEEEEEEe--CCCCCcccc-cceEEeecCCcceEEeccCCCCCCCeEEEccCceeEEEEecCHhh
Q psy12534        203 ESDDWIIFNIQVAT--RNRPNFRVT-KPFHWLRAEPNLTIKQEDLNAESDDWIIFNIQQTGYYRVLYDEKN  270 (343)
Q Consensus       203 ~~~~W~I~Pit~~~--~~~~~~~~~-~~~~wl~~~~~~~i~l~~~~~~~~~wi~~N~~~~GyYRV~YD~~~  270 (343)
                      .+..|.| ||.+..  ..|....-. .....|+.. ++++++.+  ....-..-++-+.+.+-++.||-..
T Consensus        21 ~K~P~~I-Pv~~gLl~~~G~~~~~~~~~vl~L~~~-~qtf~F~~--v~~~PvpSllRgFSAPV~l~~~~s~   87 (367)
T PF11940_consen   21 EKQPLHI-PVRVGLLDPDGKELPLRLERVLELTEA-EQTFTFEG--VSEKPVPSLLRGFSAPVKLEYDYSD   87 (367)
T ss_dssp             S-----E-EEEEEEE-TTS-B-SEEESEEEEE-SS-EEEEEES-----S--EEEESTTG-SSSEEE----H
T ss_pred             CCCCeee-eeEEEEECCCCCCccCCCCceEEeccC-eEEEEEeC--CCCCceeehhcCcccceEecCCCCH
Confidence            4567899 999754  323322100 234455544 45677775  3444478889999999999997443


Done!