RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12534
(343 letters)
>3se6_A Endoplasmic reticulum aminopeptidase 2; thermolysin-like catalytic
domain, zinc BIND glycosylation, hydrolase; HET: LYS NAG
MES MAN; 3.08A {Homo sapiens}
Length = 967
Score = 168 bits (427), Expect = 1e-46
Identities = 62/311 (19%), Positives = 103/311 (33%), Gaps = 100/311 (32%)
Query: 53 TVLKLGLQKYIKKKAMGSSTQAELWAFLTNAGHE-------------------MRTLPEK 93
+ G+ +Y+KK + ++ +LW+ L+N+ E + L E
Sbjct: 472 EKFQKGIIQYLKKFSYRNAKNDDLWSSLSNSCLESDFTSGGVCHSDPKMTSNMLAFLGEN 531
Query: 94 MDVETIMNTWTLQTGFPVIRVARDYDAGSAVVKQVRGLGFTLIIIVLINTARTELKG--- 150
+V+ +M TWTLQ G P++ V +D S ++Q R F + R +
Sbjct: 532 AEVKEMMTTWTLQKGIPLLVVKQDG--CSLRLQQER---FLQGVFQEDPEWRALQERYLW 586
Query: 151 --PFTPAVGYHYYGAQELRRDLTTRNRPNFRVTKPSHWLRAEPNLTIKQEDLNAESDDWI 208
P T +T + H L+++ + T+ + W+
Sbjct: 587 HIPLT----------------YSTSSSNVI----HRHILKSKTD-TLDLPE----KTSWV 621
Query: 209 IFNIQVATRNRPNFRVTKPFHWLRAEPNLTIKQEDLNAESDDWIIFNIQQTGYYRVLYDE 268
FN+ GYY V Y+
Sbjct: 622 --------------------------------------------KFNVDSNGYYIVHYEG 637
Query: 269 KNWYLIIATLRNSTTYNTIHLLNRAQLIDDAMNLARAGLLDYKIALDVTAYLQYETELVP 328
W +I L + + + +R LI D L AG L ALD+T YLQ+ET
Sbjct: 638 HGWDQLITQLNQN--HTLLRPKDRVGLIHDVFQLVGAGRLTLDKALDMTYYLQHETSSPA 695
Query: 329 WRSAMQALGYI 339
+ L
Sbjct: 696 LLEGLSYLESF 706
>2xdt_A Endoplasmic reticulum aminopeptidase 1; glycoprotein,
metal-binding, metalloprotease, protease, hydrolase,
adaptive immunity; HET: NAG; 2.70A {Homo sapiens} PDB:
2yd0_A* 3qnf_A* 3mdj_A*
Length = 897
Score = 159 bits (404), Expect = 1e-43
Identities = 57/310 (18%), Positives = 101/310 (32%), Gaps = 104/310 (33%)
Query: 53 TVLKLGLQKYIKKKAMGSSTQAELWAFLTNAGHE-------------------MRTLPEK 93
K G+ +Y++K + ++ +LW + + E
Sbjct: 410 DAFKSGIVQYLQKHSYKNTKNEDLWDSMASICPTDGVKGMDGFCSRSQHSSSSSHWHQEG 469
Query: 94 MDVETIMNTWTLQTGFPVIRVARDYDAGSAVVKQVRGLGFTLIIIVLINTARTELKG--- 150
+DV+T+MNTWTLQ GFP+I + + +KQ + + +
Sbjct: 470 VDVKTMMNTWTLQKGFPLITITVRG--RNVHMKQEHYM--------KGSDGAPDTGYLWH 519
Query: 151 -PFTPAVGYHYYGAQELRRDLTTRNRPNFRVTKPSHWLRAEPNLTIKQEDLNAESDDWII 209
P T T L+ + + E +WI
Sbjct: 520 VPLT----------------FITSKSD----MVHRFLLKTK-----TDVLILPEEVEWIK 554
Query: 210 FNIQVATRNRPNFRVTKPFHWLRAEPNLTIKQEDLNAESDDWIIFNIQQTGYYRVLYDEK 269
FN+ GYY V Y++
Sbjct: 555 --------------------------------------------FNVGMNGYYIVHYEDD 570
Query: 270 NWYLIIATLRNSTTYNTIHLLNRAQLIDDAMNLARAGLLDYKIALDVTAYLQYETELVPW 329
W + L+ + + + +RA LI++A L G L + ALD++ YL++ETE++P
Sbjct: 571 GWDSLTGLLKGT--HTAVSSNDRASLINNAFQLVSIGKLSIEKALDLSLYLKHETEIMPV 628
Query: 330 RSAMQALGYI 339
+ L +
Sbjct: 629 FQGLNELIPM 638
>1z5h_A Tricorn protease interacting factor F3; zinc aminopeptidase,
gluzicins, superhelix, hydrolase; 2.30A {Thermoplasma
acidophilum} PDB: 1z1w_A 3q7j_A*
Length = 780
Score = 145 bits (368), Expect = 7e-39
Identities = 42/288 (14%), Positives = 83/288 (28%), Gaps = 101/288 (35%)
Query: 53 TVLKLGLQKYIKKKAMGSSTQAELWAFLTNAGHEMRTLPEKMDVETIMNTWTLQTGFPVI 112
+ G+ KY+ G++ ++LW + + + V+ +M W G+PVI
Sbjct: 368 EEFRKGISKYLNDHKFGNAEGSDLWTAIEDVSGK--------PVKRVMEYWIKNPGYPVI 419
Query: 113 RVARDYDAGSAVVKQVRGLGFTLIIIVLINTARTEL-KGPFTPAVGYHYYGAQELRRDLT 171
++ R+ + Q R F L+N P +
Sbjct: 420 KLKRNG--RKITMYQTR---F------LLNGEEEGRWPVPVN----------------IK 452
Query: 172 TRNRPNFRVTKPSHWLRAEPNLTIKQEDLNAESDDWIIFNIQVATRNRPNFRVTKPFHWL 231
++ L E ++ E+D I N
Sbjct: 453 KKD------GVERILLEDEASI---------EADGLIKINA------------------- 478
Query: 232 RAEPNLTIKQEDLNAESDDWIIFNIQQTGYYRVLYDEKNWYLIIATLRNSTTYNTIHLLN 291
G+YRVLYD+ + ++ R + L+
Sbjct: 479 -------------------------DSAGFYRVLYDDATFSDVMGHYR------DLSPLD 507
Query: 292 RAQLIDDAMNLARAGLLDYKIALDVTAYLQYETELVPWRSAMQALGYI 339
R L+DD +G +D + + + + + + Y+
Sbjct: 508 RIGLVDDLFAFLLSGHIDPETYRQRIRNFFDDEDHNVITAIVGQMEYL 555
>3rjo_A Endoplasmic reticulum aminopeptidase 1; ERAP1, hydrolase; 2.30A
{Homo sapiens}
Length = 419
Score = 129 bits (327), Expect = 2e-34
Identities = 39/159 (24%), Positives = 68/159 (42%), Gaps = 19/159 (11%)
Query: 192 NLTIKQE----DLNAESDD---WIIFNIQVATRNRPNFRVTKPFHWLRAEPNLTIKQEDL 244
N+ +KQE + D W + + T L+ + +
Sbjct: 13 NVHMKQEHYMKGSDGAPDTGYLWHVP-LTFITSKSD----MVHRFLLKTK-----TDVLI 62
Query: 245 NAESDDWIIFNIQQTGYYRVLYDEKNWYLIIATLRNSTTYNTIHLLNRAQLIDDAMNLAR 304
E +WI FN+ GYY V Y++ W + L+ T+ + +RA LI++A L
Sbjct: 63 LPEEVEWIKFNVGMNGYYIVHYEDDGWDSLTGLLK--GTHTAVSSNDRASLINNAFQLVS 120
Query: 305 AGLLDYKIALDVTAYLQYETELVPWRSAMQALGYIEGQL 343
G L + ALD++ YL++ETE++P + L + +
Sbjct: 121 IGKLSIEKALDLSLYLKHETEIMPVFQGLNELIPMYKLM 159
>3cia_A Cold-active aminopeptidase; psychrohilic, hydrolase; 2.70A
{Colwellia psychrerythraea}
Length = 605
Score = 66.0 bits (161), Expect = 4e-12
Identities = 12/74 (16%), Positives = 23/74 (31%), Gaps = 3/74 (4%)
Query: 58 GLQKYIKKKAMGSSTQAELWAFLTNAGHEMRTLPEKMDVETIMNTWTLQTGFPVIRVARD 117
+ +Y A S +L + + + +N W + G P
Sbjct: 408 FVLEYFDSHAFQSLGTDNFVKYLKANLTDKYP---NIVSDNEINEWIFKAGLPSYAPQPT 464
Query: 118 YDAGSAVVKQVRGL 131
+A + KQ+ L
Sbjct: 465 SNAFKVIDKQINQL 478
>3b7s_A Leukotriene A-4 hydrolase; transition state, analogue peptide,
hydrolysis, hydrolase, leukotriene biosynthesis,
metal-binding, metalloprotease; 1.47A {Homo sapiens}
SCOP: a.118.1.7 b.98.1.1 d.92.1.13 PDB: 3b7t_A 3b7r_L*
2r59_A* 3b7u_X* 3fun_A* 1hs6_A* 2vj8_A* 3fh7_A* 3fh8_A*
3fhe_A* 3fts_A* 3ftu_A* 3ftv_A* 3ftw_A* 3ftx_A* 3fty_A*
3ftz_A* 3fu0_A* 3fu3_A* 3fu5_A* ...
Length = 616
Score = 61.7 bits (150), Expect = 9e-11
Identities = 14/70 (20%), Positives = 26/70 (37%), Gaps = 4/70 (5%)
Query: 58 GLQKYIKKKAMGSSTQAELWAFLTNAGHEMRTLPEKMDVETIMNTWTLQTGFPVIRVARD 117
L+ Y++K + S T + FL + + + + N W G P I+ D
Sbjct: 412 FLKAYVEKFSYKSITTDDWKDFLYSYFKD----KVDVLNQVDWNAWLYSPGLPPIKPNYD 467
Query: 118 YDAGSAVVKQ 127
+A +
Sbjct: 468 MTLTNACIAL 477
>2xq0_A LTA-4 hydrolase, leukotriene A-4 hydrolase; HET: BES; 1.96A
{Saccharomyces cerevisiae} PDB: 2xpz_A* 2xpy_A*
Length = 632
Score = 58.7 bits (142), Expect = 1e-09
Identities = 12/67 (17%), Positives = 20/67 (29%), Gaps = 4/67 (5%)
Query: 58 GLQKYIKKKAMGSSTQAELWAFLTNAGHEMRTLPEKMDVETIMNTWTLQTGFPVIRVARD 117
++ Y KK A S + L E +++ TW + G P
Sbjct: 413 FIRHYFKKFAKKSLDTFQFLDTLYEFYPE----KKEILDSVDWETWLYKPGMPPRPHFIT 468
Query: 118 YDAGSAV 124
A +
Sbjct: 469 ALADNVY 475
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 51.2 bits (122), Expect = 4e-07
Identities = 61/353 (17%), Positives = 107/353 (30%), Gaps = 139/353 (39%)
Query: 3 KRPLGSYLLVWEPKTYDVKFLVPIRVVLVQLS---LSCEL----PKN---HLR-ATGSWQ 51
P YLL + + P+ + ++QL+ ++ +L P +L+ ATG Q
Sbjct: 224 NTPDKDYLL-----SIPISC--PL-IGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQ 275
Query: 52 STVLKLGLQKYIKKKAMGSSTQAELWA-FLTNA-------------GHE---MRTLPEKM 94
V + + A S W F + +E +LP +
Sbjct: 276 GLVTAVAI-------AETDS-----WESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSI 323
Query: 95 DVETIMNTWTLQTGFP-----VIRVARDYDAGSAVVKQVRGLGFTL-----IIIVLINTA 144
+++ N G P + + ++ V V L + I L+N A
Sbjct: 324 LEDSLENN----EGVPSPMLSISNLTQE-----QVQDYVNKTNSHLPAGKQVEISLVNGA 374
Query: 145 RTE-LKGPFTPAVGYHYYGAQELRRDLTTRNRPNFRVTKPSHWLRAEPNLTIKQEDLNAE 203
+ + GP P Y LR+ +A L +
Sbjct: 375 KNLVVSGP--PQSLYGL--NLTLRK------------------AKAPSGLDQSR------ 406
Query: 204 SDDWIIFNIQVATRNR-PNF-----RVTKPFH--WLR----------AEPNLTIKQEDLN 245
I F R F V PFH L + N++ +D+
Sbjct: 407 ----IPF------SERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQ 456
Query: 246 AESDDWI-IFNIQQTGY-YRVLYDEKNWYLI--IATLR----NSTTYNTIHLL 290
I +++ G RVL + ++ I L +T + H+L
Sbjct: 457 ------IPVYDT-FDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHIL 502
Score = 37.0 bits (85), Expect = 0.009
Identities = 31/233 (13%), Positives = 59/233 (25%), Gaps = 95/233 (40%)
Query: 118 YDAGSAVVKQV---------RGLGFTLIIIVLINTARTELKGPFTPAVG---YHYYGAQ- 164
Y S + V GF+++ IV+ N L F G Y A
Sbjct: 1636 YKT-SKAAQDVWNRADNHFKDTYGFSILDIVINNP--VNLTIHFGGEKGKRIRENYSAMI 1692
Query: 165 -ELRRDLTTRNRPNFRVTKPSHWLRAEPNLTIKQEDLNAESDDWIIFNIQVATRNRPNFR 223
E D + F + S+ ++ AT+
Sbjct: 1693 FETIVDGKLKTEKIF------------KEINEHSTSYTFRSEKGLLS----ATQF----- 1731
Query: 224 VTKP---------FHWLRAEPNLTIKQED-------------LNAESDDWIIFNIQQTGY 261
T+P F L+++ + D L + +D + +I+
Sbjct: 1732 -TQPALTLMEKAAFEDLKSK---GLIPADATFAGHSLGEYAALASLAD---VMSIES--- 1781
Query: 262 YRVLYDEKNWYLIIATLRNSTTYNTIHLLN-RAQLIDDAMNLARAGLLDYKIA 313
+ ++ R + A+ G +Y +
Sbjct: 1782 ------------------------LVEVVFYRGMTMQVAVPRDELGRSNYGMI 1810
Score = 35.8 bits (82), Expect = 0.020
Identities = 16/84 (19%), Positives = 30/84 (35%), Gaps = 13/84 (15%)
Query: 79 FLTNAGHEMRTLPEKMD---VETIMNT---WTLQTGFPVIRVARDYDAGSA------VVK 126
+ T G ++R L + V+ I+ W T F + D+ G A +
Sbjct: 460 YDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHIL-DFGPGGASGLGVLTHR 518
Query: 127 QVRGLGFTLIIIVLINTARTELKG 150
G G +I+ ++ + G
Sbjct: 519 NKDGTGVRVIVAGTLDINPDDDYG 542
Score = 35.0 bits (80), Expect = 0.045
Identities = 73/404 (18%), Positives = 115/404 (28%), Gaps = 151/404 (37%)
Query: 2 TKRPL----GSYLLVWEPKTYDVKFLVPIRVVLVQLSLSCELPKNHLRATGSWQSTVLKL 57
+ RPL GS + LVP + A+ L+
Sbjct: 5 STRPLTLSHGSL---------EHVLLVP--------------TASFFIAS------QLQE 35
Query: 58 GLQKYIKKKAMGS------STQAELWA-FLTNAGHEMRTLPEKMDVETIMNTWTLQTGFP 110
K + + G +T AEL FL G+ + +
Sbjct: 36 QFNKILPEPTEGFAADDEPTTPAELVGKFL---GYVSSLVEPSKVGQFD----------Q 82
Query: 111 VIRVA-----RDYDAGS---AVVKQVRGLGFTLIIIV--LINT---ARTELKGPFTP--- 154
V+ + Y G+ A+ ++ T ++ LI AR K PF
Sbjct: 83 VLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSN 142
Query: 155 -----AVG------YHYYGAQ--------ELR----------RDLTT----------RNR 175
AVG +G Q ELR DL R
Sbjct: 143 SALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTT 202
Query: 176 PNFRVTKPS-----HWLRAEPNLTIKQEDLNAESDDW-IIFNIQVA----TRNRPNFRVT 225
+ WL P+ T ++ L + +I IQ+A T F
Sbjct: 203 LDAEKVFTQGLNILEWLE-NPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPG 261
Query: 226 KPFHWLRAEPNLTIKQEDL-----NAESDDWIIFNIQQTGYYRVLYDEKNWYLIIATLRN 280
+ +L+ T + L AE+D W F + VL+ + I +R
Sbjct: 262 ELRSYLKG---ATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLF----F---IG-VRC 310
Query: 281 STTYNTIHLLNRAQLIDDA----------M----NLARAGLLDY 310
Y L +++D+ M NL + + DY
Sbjct: 311 YEAYPNTSL--PPSILEDSLENNEGVPSPMLSISNLTQEQVQDY 352
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 48.3 bits (114), Expect = 3e-06
Identities = 41/259 (15%), Positives = 86/259 (33%), Gaps = 78/259 (30%)
Query: 86 EMRTLPEKMDVETIMNTWTLQTGFPVIRVARDYDA----GSAVVKQ-VRGL-----GFTL 135
+++ K +++ I + + V R + +V++ V + F
Sbjct: 41 MPKSILSKEEIDHI-----IMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKF-- 93
Query: 136 IIIVLINTARTELKGPFTPAVGYHYYGAQELRRDLTTRNRPNFRVTKPSHWLRAEPNLTI 195
L++ +TE + P Y RD + F + R +P L +
Sbjct: 94 ----LMSPIKTEQRQPSMMTRMYIEQ------RDRLYNDNQVFA---KYNVSRLQPYLKL 140
Query: 196 KQEDLNAESDDWIIFN-----------IQVA----TRNRPNFRVTKPFHWLRAEPNLTIK 240
+Q L ++ + + V + + +F++ W L +K
Sbjct: 141 RQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKI----FW------LNLK 190
Query: 241 QEDLNAESDDWIIFNIQQTGYYRVLYDEKNWYLIIATLRNSTTYNTIHLLNRAQLIDDAM 300
+ S + ++ + Q Y++ + NW T R+ + N ++ Q
Sbjct: 191 NCN----SPETVL-EMLQKLLYQI---DPNW-----TSRSDHSSNIKLRIHSIQA----- 232
Query: 301 NLARAGLL---DYKIALDV 316
L R LL Y+ L V
Sbjct: 233 ELRR--LLKSKPYENCLLV 249
Score = 35.6 bits (81), Expect = 0.022
Identities = 28/163 (17%), Positives = 53/163 (32%), Gaps = 26/163 (15%)
Query: 161 YGAQELRRDLTTRNRPNFRVTKPSHWLRAEPNLTIKQEDLNAESDDWIIFNIQVATRNRP 220
+ +++ + R N++ +L P IK E S ++ Q
Sbjct: 74 KQEEMVQKFVEEVLRINYK------FL-MSP---IKTEQ-RQPSMMTRMYIEQRDRLYND 122
Query: 221 NFRVTKPFHWLRAEPNLTIKQEDLNAESDDWI-IFNIQQTGYYRVLYDEKNWYLIIATLR 279
N +V ++ R +P L ++Q L + I + +G K W + +
Sbjct: 123 N-QVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSG--------KTW-VALDVCL 172
Query: 280 NSTT----YNTIHLLNRAQLIDDAMNLARAGLLDYKIALDVTA 318
+ I LN L L Y+I + T+
Sbjct: 173 SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTS 215
Score = 28.3 bits (62), Expect = 4.5
Identities = 20/111 (18%), Positives = 36/111 (32%), Gaps = 27/111 (24%)
Query: 156 VGYHYYGAQELRR-DLTTRNRPNFRVTKPSHWLRAEPNLTIKQEDLNAESDDWIIFNIQV 214
+G+H + R L +FR +L I+ + + I+ +Q
Sbjct: 477 IGHHLKNIEHPERMTLFRMVFLDFR------FLEQ----KIRHDSTAWNASGSILNTLQQ 526
Query: 215 A-------TRNRPNF--RVTKPFHWL-RAEPNLT------IKQEDLNAESD 249
N P + V +L + E NL + + L AE +
Sbjct: 527 LKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDE 577
Score = 28.3 bits (62), Expect = 5.1
Identities = 30/186 (16%), Positives = 57/186 (30%), Gaps = 39/186 (20%)
Query: 170 LTTRNRPNFRVTKPSHWLRAEPNLTIKQEDLN-AESDDWIIFNIQVATRNRPNFRVTK-- 226
LTTR + + +L L E ++ + ++ P V
Sbjct: 270 LTTRFKQVTDFLSAAT--TTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR-EVLTTN 326
Query: 227 PFH------WLRAEPNLTIKQ-EDLNAESDDWII---FNIQQTGYYRVLYDEKNWYLIIA 276
P +R T + +N + II N+ + YR ++D ++
Sbjct: 327 PRRLSIIAESIRDGLA-TWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDR------LS 379
Query: 277 TLRNST--TYNTIHLLNRAQLIDDAMN----LARAGLLD----------YKIALDVTAYL 320
S + L+ + D M L + L++ I L++ L
Sbjct: 380 VFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKL 439
Query: 321 QYETEL 326
+ E L
Sbjct: 440 ENEYAL 445
>3ebh_A PFA-M1, M1 family aminopeptidase; hydrolase, metal-binding,
metalloprotease, P hydrolase inhibitor; HET: BES; 1.65A
{Plasmodium falciparum} PDB: 3ebg_A* 3ebi_A* 3q43_A*
3q44_A* 3t8v_A*
Length = 889
Score = 46.0 bits (109), Expect = 1e-05
Identities = 15/65 (23%), Positives = 27/65 (41%), Gaps = 2/65 (3%)
Query: 58 GLQKYIKKKAMGSSTQAELWAFLTNAGHEMRTLPEKMDVETIMNTWTLQTGFPVIRVARD 117
G YIKK ++T + + A ++M+ ++ W Q+G P + +
Sbjct: 407 GFDIYIKKNDGNTATCEDFNYAMEQA-YKMKKADNSANLNQ-YLLWFSQSGTPHVSFKYN 464
Query: 118 YDAGS 122
YDA
Sbjct: 465 YDAEK 469
>2gtq_A Aminopeptidase N; alanine aminopeptidase, M1 family peptidas PSI-2,
structural genomics, protein structure initiative; 2.05A
{Neisseria meningitidis}
Length = 867
Score = 41.4 bits (97), Expect = 3e-04
Identities = 10/70 (14%), Positives = 24/70 (34%), Gaps = 9/70 (12%)
Query: 58 GLQKYIKKKAMGSSTQAELWAFLTNAGHEMRTLPEKMDVETIMNTWTLQTGFPVIRVARD 117
G++ Y ++ + T + A + +A ++++ W Q G PV+
Sbjct: 399 GMKLYFQRHDGQAVTCDDFRAAMADAN--------GINLD-QFALWYSQAGTPVLEAEGR 449
Query: 118 YDAGSAVVKQ 127
+
Sbjct: 450 LKNNIFELTV 459
>3b34_A Aminopeptidase N; protease, hydrolase, thermolysin, phenylal
membrane, metal-binding, metalloprotease; HET: PHE;
1.30A {Escherichia coli K12} PDB: 2hpt_A* 3b2p_A*
2hpo_A* 3b2x_A* 3b37_A* 3b3b_A* 3ked_A* 3qjx_A 3puu_A
2dq6_A 2dqm_A* 2zxg_A*
Length = 891
Score = 38.4 bits (89), Expect = 0.003
Identities = 13/65 (20%), Positives = 29/65 (44%), Gaps = 9/65 (13%)
Query: 58 GLQKYIKKKAMGSSTQAELWAFLTNAGHEMRTLPEKMDVETIMNTWTLQTGFPVIRVARD 117
G+Q Y ++ ++T + + +A + +D+ W Q+G P++ V D
Sbjct: 424 GMQLYFERHDGSAATCDDFVQAMEDASN--------VDLSH-FRRWYSQSGTPIVTVKDD 474
Query: 118 YDAGS 122
Y+ +
Sbjct: 475 YNPET 479
>1rxt_A Myristoyl-, glycylpeptide N-tetradecanoyltransferase 1; alpha-beta
structure, unique N-myristoyltransferase fold; 3.00A
{Homo sapiens} SCOP: d.108.1.2 d.108.1.2
Length = 496
Score = 32.0 bits (72), Expect = 0.32
Identities = 24/99 (24%), Positives = 37/99 (37%), Gaps = 9/99 (9%)
Query: 220 PNFRVTKPFHWLRAEPNL--TIKQEDLNAESDDWIIFNIQQTGYYRVLYDEKNWYLIIAT 277
P + HW + N+ T E+ N E D++ F T ++ + L A
Sbjct: 364 PVMSQEEVEHWFYPQENIIDTFVVENANGEVTDFLSF---YTLPSTIMNHPTHKSLKAAY 420
Query: 278 LRNSTTYNTIHLLNRAQLIDDAMNLARAGLLDYKIALDV 316
YN L+ DA+ LA+ D ALD+
Sbjct: 421 S----FYNVHTQTPLLDLMSDALVLAKMKGFDVFNALDL 455
>3iu1_A Glycylpeptide N-tetradecanoyltransferase 1; N-myristoyltransferase,
NMT1, acyltransferase, phosphoprotein, structural
genomics; HET: MYA; 1.42A {Homo sapiens} PDB: 3iu2_A*
3iwe_A* 3jtk_A*
Length = 383
Score = 28.8 bits (64), Expect = 2.9
Identities = 24/99 (24%), Positives = 37/99 (37%), Gaps = 9/99 (9%)
Query: 220 PNFRVTKPFHWLRAEPNL--TIKQEDLNAESDDWIIFNIQQTGYYRVLYDEKNWYLIIAT 277
P + HW + N+ T E+ N E D++ F T ++ + L A
Sbjct: 251 PVMSQEEVEHWFYPQENIIDTFVVENANGEVTDFLSF---YTLPSTIMNHPTHKSLKAAY 307
Query: 278 LRNSTTYNTIHLLNRAQLIDDAMNLARAGLLDYKIALDV 316
YN L+ DA+ LA+ D ALD+
Sbjct: 308 S----FYNVHTQTPLLDLMSDALVLAKMKGFDVFNALDL 342
>3p6i_A De novo designed beta-trefoil architecture with S primary
structure; de novo protein; HET: SO4; 1.32A {Synthetic}
PDB: 3ogf_A
Length = 142
Score = 27.7 bits (61), Expect = 3.7
Identities = 24/93 (25%), Positives = 35/93 (37%), Gaps = 10/93 (10%)
Query: 185 HWLRAEPNLTIKQEDLNAESDDWIIFNIQVATRNRPNFRVTKPFHWLRAEPN--LTIKQE 242
+LR P+ T+ + SD I F I + T+ +LR P+ + ++
Sbjct: 52 QYLRINPDGTV--DGTRDRSDTHIQFQISPEGNGEVLLKSTETGQYLRINPDGTVDGTRD 109
Query: 243 DLNAESDDWIIFNIQQTGYYRVLY--DEKNWYL 273
SD I F I G VL E YL
Sbjct: 110 ----RSDTHIQFQISPEGNGEVLLKSTETGQYL 138
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA
polymerase, translation, transferase-RNA complex; HET:
GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A*
3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G*
1efu_B
Length = 1289
Score = 27.6 bits (61), Expect = 6.9
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 6/45 (13%)
Query: 117 DYDAGSAVVKQVRGLGFTLIIIVLINTARTELKGPFTPAVGYHYY 161
A A+ + + +GFT NT +T +GPF + G HYY
Sbjct: 1058 PSCAVPALREVFKYVGFT------TNTKKTFSEGPFRESCGKHYY 1096
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.135 0.413
Gapped
Lambda K H
0.267 0.0591 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,311,488
Number of extensions: 309175
Number of successful extensions: 610
Number of sequences better than 10.0: 1
Number of HSP's gapped: 590
Number of HSP's successfully gapped: 29
Length of query: 343
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 249
Effective length of database: 4,077,219
Effective search space: 1015227531
Effective search space used: 1015227531
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.4 bits)