BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12535
(209 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 135 bits (340), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 72/164 (43%), Positives = 95/164 (57%), Gaps = 31/164 (18%)
Query: 14 DPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDD 73
+P R V++ CAL D LPSGDRT +G+KGV+LSGGQ+ R+SLARAVY AD+YL DD
Sbjct: 94 EPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDD 153
Query: 74 PLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTV 133
PLSAVDAHVGKH+FE+ I G +G LK KT
Sbjct: 154 PLSAVDAHVGKHIFENVI-----------------------GPKG--------MLKNKTR 182
Query: 134 MLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGLDFTQLL 177
+L+TH + YL VD ++++ G + G+ +LLA F + L
Sbjct: 183 ILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLARDGAFAEFL 226
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 103 bits (258), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 60/193 (31%), Positives = 95/193 (49%), Gaps = 33/193 (17%)
Query: 8 MGPGHPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRAD 67
+G + + R V+K C L+ED ++ D ++G+ G++LSGGQRARISLARAVYK AD
Sbjct: 120 IGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDAD 179
Query: 68 VYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSF 127
+YLLD P +D K +FE C+ L
Sbjct: 180 LYLLDSPFGYLDVLTEKEIFESCVCKL--------------------------------- 206
Query: 128 LKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGLDFTQLLDAPEEEDKAE 187
+ KT +L+T ++++L D +++L +GS +GT ++L DF+ L + D+
Sbjct: 207 MANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLRPDFSSKLMGCDSFDQFS 266
Query: 188 NEVDDNASGTLLH 200
E ++ LH
Sbjct: 267 AERRNSILTETLH 279
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 103 bits (258), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 60/193 (31%), Positives = 95/193 (49%), Gaps = 33/193 (17%)
Query: 8 MGPGHPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRAD 67
+G + + R V+K C L+ED ++ D ++G+ G++LSGGQRARISLARAVYK AD
Sbjct: 120 IGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDAD 179
Query: 68 VYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSF 127
+YLLD P +D K +FE C+ L
Sbjct: 180 LYLLDSPFGYLDVLTEKEIFESCVCKL--------------------------------- 206
Query: 128 LKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGLDFTQLLDAPEEEDKAE 187
+ KT +L+T ++++L D +++L +GS +GT ++L DF+ L + D+
Sbjct: 207 MANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLRPDFSSKLMGCDSFDQFS 266
Query: 188 NEVDDNASGTLLH 200
E ++ LH
Sbjct: 267 AERRNSILTETLH 279
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 103 bits (257), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 56/169 (33%), Positives = 86/169 (50%), Gaps = 33/169 (19%)
Query: 9 GPGHPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADV 68
G + + R V+K C L+ED ++ D ++G+ G++LSGGQRARISLARAVYK AD+
Sbjct: 122 GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADL 181
Query: 69 YLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFL 128
YLLD P +D K +FE C+ L +
Sbjct: 182 YLLDSPFGYLDVLTEKEIFESCVCKL---------------------------------M 208
Query: 129 KEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGLDFTQLL 177
KT +L+T ++++L D +++L +GS +GT ++L DF+ L
Sbjct: 209 ANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLQPDFSSKL 257
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 103 bits (256), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 87/170 (51%), Gaps = 33/170 (19%)
Query: 8 MGPGHPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRAD 67
+G + + R V+K C L+ED ++ D ++G+ G++LSGGQRARISLARAVYK AD
Sbjct: 90 IGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDAD 149
Query: 68 VYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSF 127
+YLLD P +D K +FE C+ L
Sbjct: 150 LYLLDSPFGYLDVLTEKEIFESCVCKL--------------------------------- 176
Query: 128 LKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGLDFTQLL 177
+ KT +L+T ++++L D +++L +GS +GT ++L DF+ L
Sbjct: 177 MANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLQPDFSSKL 226
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 103 bits (256), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 92/182 (50%), Gaps = 33/182 (18%)
Query: 8 MGPGHPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRAD 67
+G + + + VVK C L++D + D T++G+ GV+LSGGQRARISLARAVYK AD
Sbjct: 120 IGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDAD 179
Query: 68 VYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSF 127
+YLLD P +D + +FE C+ L
Sbjct: 180 LYLLDSPFGYLDVFTEEQVFESCVCKL--------------------------------- 206
Query: 128 LKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGLDFTQLLDAPEEEDKAE 187
+ KT +L+T ++++L D +++L +GS +GT ++L + DF+ L + D+
Sbjct: 207 MANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLRPDFSSKLMGYDTFDQFT 266
Query: 188 NE 189
E
Sbjct: 267 EE 268
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 102 bits (255), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 91/182 (50%), Gaps = 33/182 (18%)
Query: 8 MGPGHPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRAD 67
G + + + VVK C L++D + D T++G+ GV+LSGGQRARISLARAVYK AD
Sbjct: 121 FGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDAD 180
Query: 68 VYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSF 127
+YLLD P +D + +FE C+ L
Sbjct: 181 LYLLDSPFGYLDVFTEEQVFESCVCKL--------------------------------- 207
Query: 128 LKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGLDFTQLLDAPEEEDKAE 187
+ KT +L+T ++++L D +++L +GS +GT ++L + DF+ L + D+
Sbjct: 208 MANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLRPDFSSKLMGYDTFDQFT 267
Query: 188 NE 189
E
Sbjct: 268 EE 269
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 102 bits (255), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 86/170 (50%), Gaps = 33/170 (19%)
Query: 8 MGPGHPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRAD 67
G + + R V+K C L+ED ++ D ++G+ G++LSGGQRARISLARAVYK AD
Sbjct: 103 FGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDAD 162
Query: 68 VYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSF 127
+YLLD P +D K +FE C+ L
Sbjct: 163 LYLLDSPFGYLDVLTEKEIFESCVCKL--------------------------------- 189
Query: 128 LKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGLDFTQLL 177
+ KT +L+T ++++L D +++L +GS +GT ++L DF+ L
Sbjct: 190 MANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLQPDFSSKL 239
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 102 bits (255), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 86/170 (50%), Gaps = 33/170 (19%)
Query: 8 MGPGHPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRAD 67
G + + R V+K C L+ED ++ D ++G+ G++LSGGQRARISLARAVYK AD
Sbjct: 91 FGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDAD 150
Query: 68 VYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSF 127
+YLLD P +D K +FE C+ L
Sbjct: 151 LYLLDSPFGYLDVLTEKEIFESCVCKL--------------------------------- 177
Query: 128 LKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGLDFTQLL 177
+ KT +L+T ++++L D +++L +GS +GT ++L DF+ L
Sbjct: 178 MANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLQPDFSSKL 227
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 102 bits (255), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 91/181 (50%), Gaps = 33/181 (18%)
Query: 9 GPGHPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADV 68
G + + + VVK C L++D + D T++G+ GV+LSGGQRARISLARAVYK AD+
Sbjct: 122 GVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADL 181
Query: 69 YLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFL 128
YLLD P +D + +FE C+ L +
Sbjct: 182 YLLDSPFGYLDVFTEEQVFESCVCKL---------------------------------M 208
Query: 129 KEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGLDFTQLLDAPEEEDKAEN 188
KT +L+T ++++L D +++L +GS +GT ++L + DF+ L + D+
Sbjct: 209 ANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLRPDFSSKLMGYDTFDQFTE 268
Query: 189 E 189
E
Sbjct: 269 E 269
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 102 bits (255), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 91/181 (50%), Gaps = 33/181 (18%)
Query: 9 GPGHPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADV 68
G + + + VVK C L++D + D T++G+ GV+LSGGQRARISLARAVYK AD+
Sbjct: 122 GVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADL 181
Query: 69 YLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFL 128
YLLD P +D + +FE C+ L +
Sbjct: 182 YLLDSPFGYLDVFTEEQVFESCVCKL---------------------------------M 208
Query: 129 KEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGLDFTQLLDAPEEEDKAEN 188
KT +L+T ++++L D +++L +GS +GT ++L + DF+ L + D+
Sbjct: 209 ANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLRPDFSSKLMGYDTFDQFTE 268
Query: 189 E 189
E
Sbjct: 269 E 269
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 102 bits (254), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 91/182 (50%), Gaps = 33/182 (18%)
Query: 8 MGPGHPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRAD 67
G + + + VVK C L++D + D T++G+ GV+LSGGQRARISLARAVYK AD
Sbjct: 121 FGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDAD 180
Query: 68 VYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSF 127
+YLLD P +D + +FE C+ L
Sbjct: 181 LYLLDSPFGYLDVFTEEQVFESCVCKL--------------------------------- 207
Query: 128 LKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGLDFTQLLDAPEEEDKAE 187
+ KT +L+T ++++L D +++L +GS +GT ++L + DF+ L + D+
Sbjct: 208 MANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLRPDFSSKLMGYDTFDQFT 267
Query: 188 NE 189
E
Sbjct: 268 EE 269
>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain
With Atp
Length = 290
Score = 97.8 bits (242), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 86/170 (50%), Gaps = 33/170 (19%)
Query: 8 MGPGHPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRAD 67
+G + + R V+K C L+ED ++ D ++G+ G++LS GQ+A+ISLARAVYK AD
Sbjct: 120 IGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSEGQQAKISLARAVYKDAD 179
Query: 68 VYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSF 127
+YLLD P +D K +FE C+ L
Sbjct: 180 LYLLDSPFGYLDVLTEKEIFESCVCKL--------------------------------- 206
Query: 128 LKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGLDFTQLL 177
+ KT +L+T ++++L D +++L +GS +GT ++L DF+ L
Sbjct: 207 MANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLQPDFSSKL 256
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 97.4 bits (241), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 85/170 (50%), Gaps = 33/170 (19%)
Query: 8 MGPGHPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRAD 67
G + + R V+K C L+ED ++ D ++G+ G++LS GQ+A+ISLARAVYK AD
Sbjct: 121 FGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSEGQQAKISLARAVYKDAD 180
Query: 68 VYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSF 127
+YLLD P +D K +FE C+ L
Sbjct: 181 LYLLDSPFGYLDVLTEKEIFESCVCKL--------------------------------- 207
Query: 128 LKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGLDFTQLL 177
+ KT +L+T ++++L D +++L +GS +GT ++L DF+ L
Sbjct: 208 MANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLQPDFSSKL 257
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 89/186 (47%), Gaps = 43/186 (23%)
Query: 11 GHPDPNS------RRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYK 64
G DP+S +RV +V P G T+VG+KGV LSGGQ+ RI++ARA+ K
Sbjct: 441 GADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLK 500
Query: 65 RADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVR 124
+ LLD+ SA+DA ++L ++ + L G
Sbjct: 501 NPKILLLDEATSALDAE-NEYLVQEALDRLMDG--------------------------- 532
Query: 125 TSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLA--SGLDFTQLLDAPEE 182
+TV++I H++ + + + V +L++G + +G +LL+ +G+ + +L++
Sbjct: 533 ------RTVLVIAHRLSTIKNANMVAVLDQGKITEYGKHEELLSKPNGI-YRKLMNKQSF 585
Query: 183 EDKAEN 188
AEN
Sbjct: 586 ISAAEN 591
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 67.0 bits (162), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 77/164 (46%), Gaps = 40/164 (24%)
Query: 11 GHPDPNS------RRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYK 64
G DP+S +RV +V P G T+VG+KGV LSGGQ+ RI++ARA+ K
Sbjct: 472 GADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLK 531
Query: 65 RADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVR 124
+ LLD+ SA+DA ++L ++ + L G
Sbjct: 532 NPKILLLDEATSALDAE-NEYLVQEALDRLMDG--------------------------- 563
Query: 125 TSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLA 168
+TV++I H + + + + V +L++G + +G +LL+
Sbjct: 564 ------RTVLVIAHHLSTIKNANMVAVLDQGKITEYGKHEELLS 601
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 62.4 bits (150), Expect = 2e-10, Method: Composition-based stats.
Identities = 45/159 (28%), Positives = 73/159 (45%), Gaps = 35/159 (22%)
Query: 19 RVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAV 78
R K + + LP T VGDKG LSGGQ+ RI++ARA+ ++ + LLD+ SA+
Sbjct: 1143 RAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSAL 1202
Query: 79 DAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITH 138
D K V+ AL R +T ++I H
Sbjct: 1203 DTESEKV------------------------------VQEALDKAREG----RTCIVIAH 1228
Query: 139 QIQYLTHVDHVMLLEKGSVEAFGTTTQLLAS-GLDFTQL 176
++ + + D +++++ G V+ GT QLLA G+ F+ +
Sbjct: 1229 RLSTIQNADLIVVIQNGKVKEHGTHQQLLAQKGIYFSMV 1267
Score = 50.8 bits (120), Expect = 5e-07, Method: Composition-based stats.
Identities = 28/60 (46%), Positives = 40/60 (66%), Gaps = 5/60 (8%)
Query: 25 ALKE----DF-AQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVD 79
A+KE DF +LP TLVG++G LSGGQ+ RI++ARA+ + + LLD+ SA+D
Sbjct: 499 AVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALD 558
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 62.4 bits (150), Expect = 2e-10, Method: Composition-based stats.
Identities = 45/159 (28%), Positives = 73/159 (45%), Gaps = 35/159 (22%)
Query: 19 RVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAV 78
R K + + LP T VGDKG LSGGQ+ RI++ARA+ ++ + LLD+ SA+
Sbjct: 1143 RAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSAL 1202
Query: 79 DAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITH 138
D K V+ AL R +T ++I H
Sbjct: 1203 DTESEKV------------------------------VQEALDKAREG----RTCIVIAH 1228
Query: 139 QIQYLTHVDHVMLLEKGSVEAFGTTTQLLAS-GLDFTQL 176
++ + + D +++++ G V+ GT QLLA G+ F+ +
Sbjct: 1229 RLSTIQNADLIVVIQNGKVKEHGTHQQLLAQKGIYFSMV 1267
Score = 50.8 bits (120), Expect = 5e-07, Method: Composition-based stats.
Identities = 28/60 (46%), Positives = 40/60 (66%), Gaps = 5/60 (8%)
Query: 25 ALKE----DF-AQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVD 79
A+KE DF +LP TLVG++G LSGGQ+ RI++ARA+ + + LLD+ SA+D
Sbjct: 499 AVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALD 558
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 60.8 bits (146), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 70/161 (43%), Gaps = 37/161 (22%)
Query: 11 GHPDPNSRRVVKVCALKE--DF-AQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRAD 67
G P VV+ + DF LP G T VG++GV LSGGQ+ R+S+AR
Sbjct: 438 GRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPP 497
Query: 68 VYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSF 127
+ +LD+ SA+D S AL V
Sbjct: 498 ILILDEATSALDLE------------------------SESIIQEALDVLS--------- 524
Query: 128 LKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLA 168
K++T +++ H++ +TH D ++++E G + GT +L+A
Sbjct: 525 -KDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIA 564
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 60.5 bits (145), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 70/149 (46%), Gaps = 34/149 (22%)
Query: 28 EDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLF 87
E +P G T++G+ G SLSGGQR R+++ARA+ + A V +LD+ SA+D
Sbjct: 461 EFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTE------ 514
Query: 88 EDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVD 147
S ++ AL ++ K KTV++I H++ + D
Sbjct: 515 ------------------------SERAIQAALDELQ----KNKTVLVIAHRLSTIEQAD 546
Query: 148 HVMLLEKGSVEAFGTTTQLLASGLDFTQL 176
++++++G + G LLA + QL
Sbjct: 547 EILVVDEGEIIERGRHADLLAQDGAYAQL 575
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 60.1 bits (144), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 68/152 (44%), Gaps = 40/152 (26%)
Query: 33 LPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAH----VGKHLFE 88
LP G T V + G LSGGQR ++LARA+ ++ V +LDD SA+DA+ V + L+E
Sbjct: 140 LPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYE 199
Query: 89 DCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDH 148
R+ RS V+LIT + + DH
Sbjct: 200 S------------PERYSRS------------------------VLLITQHLSLVEQADH 223
Query: 149 VMLLEKGSVEAFGTTTQLLASGLDFTQLLDAP 180
++ LE G++ GT QL+ + ++ AP
Sbjct: 224 ILFLEGGAIREGGTHQQLMEKKGCYWAMVQAP 255
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 60.1 bits (144), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 71/155 (45%), Gaps = 34/155 (21%)
Query: 31 AQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDC 90
A+LP G T VGD+G LSGGQ+ RI++ARA+ + + LLD+ SA+D K
Sbjct: 1201 AELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKV----- 1255
Query: 91 ITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVM 150
V+ AL R + +T ++I H++ + + D +
Sbjct: 1256 -------------------------VQEALDRAR----EGRTCIVIAHRLNTVMNADCIA 1286
Query: 151 LLEKGSVEAFGTTTQLLASGLDFTQLLDAPEEEDK 185
++ G++ GT TQL++ + +L E K
Sbjct: 1287 VVSNGTIIEKGTHTQLMSEKGAYYKLTQKQMTEKK 1321
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 11 GHPDPNSRRVVKVCALK--EDFAQ-LPSGDRTLVGDKGVSLSGGQRARISLARAVYKRAD 67
G +V C + E F + LP+G TLVGD+G LSGGQ+ RI++ARA+ +
Sbjct: 515 GKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPK 574
Query: 68 VYLLDDPLSAVDAH 81
+ LLD+ SA+DA
Sbjct: 575 ILLLDEATSALDAE 588
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 64/142 (45%), Gaps = 40/142 (28%)
Query: 33 LPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDA----HVGKHLFE 88
P G T VG+ G LSGGQR ++LARA+ ++ + +LD SA+DA V + L+E
Sbjct: 142 FPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDQATSALDAGNQLRVQRLLYE 201
Query: 89 DCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDH 148
P + SR TV+LITHQ+ H
Sbjct: 202 S---------PEWASR---------------------------TVLLITHQLSLAERAHH 225
Query: 149 VMLLEKGSVEAFGTTTQLLASG 170
++ L++GSV GT QL+ G
Sbjct: 226 ILFLKEGSVCEQGTHLQLMERG 247
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 78/171 (45%), Gaps = 37/171 (21%)
Query: 11 GHPDPNSRRVVKVCALKE--DFAQ-LPSGDRTLVGDKGVSLSGGQRARISLARAVYKRAD 67
G D V+K + DF + LP T+VG+KG+ LSGG+R RI++AR + K
Sbjct: 116 GKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPK 175
Query: 68 VYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSF 127
+ + D+ S++D+ ++LF+ + L
Sbjct: 176 IVIFDEATSSLDSKT-EYLFQKAVEDLR-------------------------------- 202
Query: 128 LKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGLDFTQLLD 178
K +T+++I H++ ++ + ++LL KG + GT LL ++ ++ +
Sbjct: 203 -KNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKLNGEYAEMWN 252
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 64/142 (45%), Gaps = 40/142 (28%)
Query: 33 LPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDA----HVGKHLFE 88
P G T VG+ G LSGGQR ++LARA+ ++ + +LD+ SA+DA V + L+E
Sbjct: 142 FPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYE 201
Query: 89 DCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDH 148
P + SR TV+LIT Q+ H
Sbjct: 202 S---------PEWASR---------------------------TVLLITQQLSLAERAHH 225
Query: 149 VMLLEKGSVEAFGTTTQLLASG 170
++ L++GSV GT QL+ G
Sbjct: 226 ILFLKEGSVCEQGTHLQLMERG 247
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 78/168 (46%), Gaps = 37/168 (22%)
Query: 4 ILAPMGPGHPDPNSRRVVKVCALK--EDF-AQLPSGDRTLVGDKGVSLSGGQRARISLAR 60
I+ + +P + +V+ L DF ++L G T+VG++G LSGGQR RI++AR
Sbjct: 93 IIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIAR 152
Query: 61 AVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGAL 120
A+ + + D+ SA+D + +H+ + +H
Sbjct: 153 ALVNNPKILIFDEATSALD-YESEHVI---MRNMH------------------------- 183
Query: 121 SLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLA 168
K +TV++I H++ + + D ++++EKG + G +LL+
Sbjct: 184 -----KICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLS 226
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 78/168 (46%), Gaps = 37/168 (22%)
Query: 4 ILAPMGPGHPDPNSRRVVKVCALK--EDF-AQLPSGDRTLVGDKGVSLSGGQRARISLAR 60
I+ + +P + +V+ L DF ++L G T+VG++G LSGGQR RI++AR
Sbjct: 99 IIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIAR 158
Query: 61 AVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGAL 120
A+ + + D+ SA+D + +H+ + +H
Sbjct: 159 ALVNNPKILIFDEATSALD-YESEHVI---MRNMH------------------------- 189
Query: 121 SLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLA 168
K +TV++I H++ + + D ++++EKG + G +LL+
Sbjct: 190 -----KICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLS 232
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 78/168 (46%), Gaps = 37/168 (22%)
Query: 4 ILAPMGPGHPDPNSRRVVKVCALK--EDF-AQLPSGDRTLVGDKGVSLSGGQRARISLAR 60
I+ + +P + +V+ L DF ++L G T+VG++G LSGGQR RI++AR
Sbjct: 95 IIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIAR 154
Query: 61 AVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGAL 120
A+ + + D+ SA+D + +H+ + +H
Sbjct: 155 ALVNNPKILIFDEATSALD-YESEHVI---MRNMH------------------------- 185
Query: 121 SLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLA 168
K +TV++I H++ + + D ++++EKG + G +LL+
Sbjct: 186 -----KICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLS 228
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 78/168 (46%), Gaps = 37/168 (22%)
Query: 4 ILAPMGPGHPDPNSRRVVKVCALK--EDF-AQLPSGDRTLVGDKGVSLSGGQRARISLAR 60
I+ + +P + +V+ L DF ++L G T+VG++G LSGGQR RI++AR
Sbjct: 95 IIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIAR 154
Query: 61 AVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGAL 120
A+ + + D+ SA+D + +H+ + +H
Sbjct: 155 ALVNNPKILIFDEATSALD-YESEHVI---MRNMH------------------------- 185
Query: 121 SLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLA 168
K +TV++I H++ + + D ++++EKG + G +LL+
Sbjct: 186 -----KICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLS 228
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 77/168 (45%), Gaps = 37/168 (22%)
Query: 4 ILAPMGPGHPDPNSRRVVKVCALK--EDF-AQLPSGDRTLVGDKGVSLSGGQRARISLAR 60
I+ + +P + +V+ L DF ++L G T+VG++G LSGGQR RI++AR
Sbjct: 99 IIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIAR 158
Query: 61 AVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGAL 120
A+ + + D SA+D + +H+ + +H
Sbjct: 159 ALVNNPKILIFDQATSALD-YESEHVI---MRNMH------------------------- 189
Query: 121 SLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLA 168
K +TV++I H++ + + D ++++EKG + G +LL+
Sbjct: 190 -----KICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLS 232
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 74/154 (48%), Gaps = 35/154 (22%)
Query: 24 CALKEDFA-QLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHV 82
A DF ++ +G T++G+ GV LSGGQR RI++ARA+ + + + +LD+ SA+D
Sbjct: 456 MAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTE- 514
Query: 83 GKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQY 142
S ++ AL ++ K +T ++I H++
Sbjct: 515 -----------------------------SERAIQAALDELQ----KNRTSLVIAHRLST 541
Query: 143 LTHVDHVMLLEKGSVEAFGTTTQLLASGLDFTQL 176
+ D ++++E G + GT ++LLA + QL
Sbjct: 542 IEQADEIVVVEDGIIVERGTHSELLAQHGVYAQL 575
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 71/158 (44%), Gaps = 34/158 (21%)
Query: 12 HPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLL 71
+ D + +V+ + + +P T VG++GV +SGGQR R+++ARA + + +L
Sbjct: 104 YTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILML 163
Query: 72 DDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEK 131
D+ +++D+ S V+ AL S +K +
Sbjct: 164 DEATASLDSE------------------------------SESMVQKALD----SLMKGR 189
Query: 132 TVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLAS 169
T ++I H++ + D + +EKG + G +L+A+
Sbjct: 190 TTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVAT 227
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 53.1 bits (126), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 63/142 (44%), Gaps = 40/142 (28%)
Query: 33 LPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDA----HVGKHLFE 88
P G T VG+ G L+ GQR ++LARA+ ++ + +LD+ SA+DA V + L+E
Sbjct: 142 FPQGYDTEVGETGNQLAVGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYE 201
Query: 89 DCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDH 148
P + SR TV+LIT Q+ H
Sbjct: 202 S---------PEWASR---------------------------TVLLITQQLSLAERAHH 225
Query: 149 VMLLEKGSVEAFGTTTQLLASG 170
++ L++GSV GT QL+ G
Sbjct: 226 ILFLKEGSVCEQGTHLQLMERG 247
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 70/169 (41%), Gaps = 37/169 (21%)
Query: 2 GPILAPMGPGHPDPNSRRVV---KVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISL 58
G I + G D +V K+ + + LP G + V G + SGGQ+ R+S+
Sbjct: 431 GTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSI 490
Query: 59 ARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRG 118
ARA+ K+ V +LDD S+VD K + + G+ R+
Sbjct: 491 ARALVKKPKVLILDDCTSSVDPITEKRILD--------GLKRYT---------------- 526
Query: 119 ALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLL 167
K T +IT +I D +++L +G V FGT +LL
Sbjct: 527 ----------KGCTTFIITQKIPTALLADKILVLHEGKVAGFGTHKELL 565
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 77/168 (45%), Gaps = 37/168 (22%)
Query: 4 ILAPMGPGHPDPNSRRVVKVCALK--EDF-AQLPSGDRTLVGDKGVSLSGGQRARISLAR 60
I+ + +P + +V+ L DF ++L G T+VG++G LSGGQR RI++AR
Sbjct: 93 IIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIAR 152
Query: 61 AVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGAL 120
A+ + + D+ SA+D + +H+ + +H
Sbjct: 153 ALVNNPKILIFDEATSALD-YESEHVI---MRNMH------------------------- 183
Query: 121 SLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLA 168
K +TV++I ++ + + D ++++EKG + G +LL+
Sbjct: 184 -----KICKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELLS 226
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 77/168 (45%), Gaps = 37/168 (22%)
Query: 4 ILAPMGPGHPDPNSRRVVKVCALK--EDF-AQLPSGDRTLVGDKGVSLSGGQRARISLAR 60
I+ + +P + +V+ L DF ++L G T+VG++G LSGGQR RI++AR
Sbjct: 99 IIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIAR 158
Query: 61 AVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGAL 120
A+ + + D+ SA+D + +H+ + +H
Sbjct: 159 ALVNNPKILIFDEATSALD-YESEHVI---MRNMH------------------------- 189
Query: 121 SLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLA 168
K +TV++I ++ + + D ++++EKG + G +LL+
Sbjct: 190 -----KICKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELLS 232
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 68/153 (44%), Gaps = 37/153 (24%)
Query: 33 LPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCIT 92
P G RT VG++G+ LSGG++ R+++AR + K + LLD+ SA+D
Sbjct: 176 FPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTS----------- 224
Query: 93 GLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLL 152
+ ++ +L+ V +T +++ H++ + + D ++++
Sbjct: 225 -------------------NERAIQASLAKV----CANRTTIVVAHRLSTVVNADQILVI 261
Query: 153 EKGSVEAFGTTTQLLASG---LDFTQLLDAPEE 182
+ G + G LL+ G D QL EE
Sbjct: 262 KDGCIVERGRHEALLSRGGVYADMWQLQQGQEE 294
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 50.8 bits (120), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 68/145 (46%), Gaps = 35/145 (24%)
Query: 24 CALKEDFA-QLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHV 82
A DF ++ +G T++G+ GV LSGGQR RI++ARA+ + + + +LD+ SA+D
Sbjct: 456 MAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTE- 514
Query: 83 GKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQY 142
S ++ AL ++ K +T ++I H++
Sbjct: 515 -----------------------------SERAIQAALDELQ----KNRTSLVIAHRLST 541
Query: 143 LTHVDHVMLLEKGSVEAFGTTTQLL 167
+ D ++++E G + GT LL
Sbjct: 542 IEKADEIVVVEDGVIVERGTHNDLL 566
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 56/120 (46%), Gaps = 33/120 (27%)
Query: 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGR 107
LSGGQ+ R++LARA+ R V L D+P +A+D + + L + +H
Sbjct: 146 LSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRREL-RTFVRQVH------------ 192
Query: 108 SFFGSALGVRGALSLVRTSFLKEKTVMLITH-QIQYLTHVDHVMLLEKGSVEAFGTTTQL 166
+GV T + +TH Q + L D V++L +G+VE FGT ++
Sbjct: 193 ----DEMGV---------------TSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEV 233
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 58/134 (43%), Gaps = 34/134 (25%)
Query: 37 DRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHT 96
D G V LSGGQ+ R+S+ARA+ DV L D+P SA+D
Sbjct: 143 DERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDP---------------- 186
Query: 97 GVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHV-DHVMLLEKG 155
G L + L+ + KT++++TH++ + HV HV+ L +G
Sbjct: 187 -----------ELVGEVLRIMQQLA------EEGKTMVVVTHEMGFARHVSSHVIFLHQG 229
Query: 156 SVEAFGTTTQLLAS 169
+E G Q+ +
Sbjct: 230 KIEEEGDPEQVFGN 243
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 56/121 (46%), Gaps = 34/121 (28%)
Query: 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGR 107
LSGG++ R+++A + D+ +LD+PL +D GK T + R +W
Sbjct: 139 LSGGEKRRVAIASVIVHEPDILILDEPLVGLDRE-GK-----------TDLLRIVEKW-- 184
Query: 108 SFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQ-YLTHVDHVMLLEKGSVEAFGTTTQL 166
LG KTV+LI+H I+ + HVD V++LEKG GT +
Sbjct: 185 ----KTLG---------------KTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEF 225
Query: 167 L 167
L
Sbjct: 226 L 226
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 56/121 (46%), Gaps = 34/121 (28%)
Query: 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGR 107
LSGG++ R+++A + D+ +LD+PL +D GK T + R +W
Sbjct: 141 LSGGEKRRVAIASVIVHEPDILILDEPLVGLDRE-GK-----------TDLLRIVEKW-- 186
Query: 108 SFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQ-YLTHVDHVMLLEKGSVEAFGTTTQL 166
LG KTV+LI+H I+ + HVD V++LEKG GT +
Sbjct: 187 ----KTLG---------------KTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEF 227
Query: 167 L 167
L
Sbjct: 228 L 228
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 55/128 (42%), Gaps = 33/128 (25%)
Query: 40 LVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVP 99
L+ K LSGGQR R++L RA+ +R V+L D+PLS +DA +
Sbjct: 135 LLNRKPRELSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAKL----------------- 177
Query: 100 RFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITH-QIQYLTHVDHVMLLEKGSVE 158
R R LGV T + +TH Q++ T D + + KG ++
Sbjct: 178 RVKXRAELKKLQRQLGV---------------TTIYVTHDQVEAXTXGDRIAVXNKGELQ 222
Query: 159 AFGTTTQL 166
GT ++
Sbjct: 223 QVGTPDEV 230
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 47.0 bits (110), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 57/128 (44%), Gaps = 33/128 (25%)
Query: 40 LVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVP 99
L+ K +LSGGQR R+++ R + V+LLD+PLS +DA + + +
Sbjct: 126 LLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALR--------VQMRIEIS 177
Query: 100 RFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITH-QIQYLTHVDHVMLLEKGSVE 158
R R GR T++ +TH Q++ +T D +++L+ G V
Sbjct: 178 RLHKRLGR------------------------TMIYVTHDQVEAMTLADKIVVLDAGRVA 213
Query: 159 AFGTTTQL 166
G +L
Sbjct: 214 QVGKPLEL 221
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 47.0 bits (110), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 57/128 (44%), Gaps = 33/128 (25%)
Query: 40 LVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVP 99
L+ K +LSGGQR R+++ R + V+LLD+PLS +DA + + +
Sbjct: 126 LLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALR--------VQMRIEIS 177
Query: 100 RFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITH-QIQYLTHVDHVMLLEKGSVE 158
R R GR T++ +TH Q++ +T D +++L+ G V
Sbjct: 178 RLHKRLGR------------------------TMIYVTHDQVEAMTLADKIVVLDAGRVA 213
Query: 159 AFGTTTQL 166
G +L
Sbjct: 214 QVGKPLEL 221
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 56/128 (43%), Gaps = 33/128 (25%)
Query: 40 LVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVP 99
L+ K +LSGGQR R+++ R + V+LLD PLS +DA + + +
Sbjct: 126 LLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDAALR--------VQMRIEIS 177
Query: 100 RFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITH-QIQYLTHVDHVMLLEKGSVE 158
R R GR T++ +TH Q++ +T D +++L+ G V
Sbjct: 178 RLHKRLGR------------------------TMIYVTHDQVEAMTLADKIVVLDAGRVA 213
Query: 159 AFGTTTQL 166
G +L
Sbjct: 214 QVGKPLEL 221
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 31/43 (72%)
Query: 40 LVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHV 82
L+ K LSGGQR R++L RA+ ++ V+L+D+PLS +DA +
Sbjct: 132 LLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKL 174
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 31/44 (70%)
Query: 39 TLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHV 82
L+ K LSGGQ+ R++LARA+ K+ V L D+PLS +DA++
Sbjct: 125 NLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANL 168
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 43.9 bits (102), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 27/36 (75%)
Query: 47 SLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHV 82
LSGGQR R+++ARA+ DV L+D+PLS +DA +
Sbjct: 142 QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKL 177
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 43.9 bits (102), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 27/36 (75%)
Query: 47 SLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHV 82
LSGGQR R+++ARA+ DV L+D+PLS +DA +
Sbjct: 141 QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKL 176
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 27/34 (79%)
Query: 47 SLSGGQRARISLARAVYKRADVYLLDDPLSAVDA 80
LSGGQ+ R+++ARA+ K +V LLD+PLS +DA
Sbjct: 133 QLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDA 166
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 32/51 (62%)
Query: 40 LVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDC 90
L+ K LSGG+R R++LARA+ + + LLD+PLSAVD L E+
Sbjct: 119 LLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEEL 169
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/159 (20%), Positives = 60/159 (37%), Gaps = 34/159 (21%)
Query: 9 GPGHPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADV 68
PG D + K+ LP G T++ D G LS GQR +++ RA +
Sbjct: 453 NPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKI 512
Query: 69 YLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFL 128
+LD+ S VD K ++ A+ +
Sbjct: 513 LILDEATSNVDTKTEK------------------------------SIQAAMW----KLM 538
Query: 129 KEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLL 167
+ KT ++I H++ + + D +++L G + G +L+
Sbjct: 539 EGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDELI 577
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 40.0 bits (92), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 27/34 (79%)
Query: 46 VSLSGGQRARISLARAVYKRADVYLLDDPLSAVD 79
++LSGG++ R++LARA+ + LLD+PLSA+D
Sbjct: 126 LTLSGGEQQRVALARALVTNPKILLLDEPLSALD 159
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/128 (20%), Positives = 56/128 (43%), Gaps = 35/128 (27%)
Query: 46 VSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRW 105
++LSGGQ+ R+++A + + LD+P+S +D + +F+
Sbjct: 139 LNLSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQREIFQ----------------- 181
Query: 106 GRSFFGSALGVRGALSLVRTSFLKE-KTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTT 164
V S E K ++L+TH+++YL +D ++ + G+++ G+
Sbjct: 182 -----------------VLESLKNEGKGIILVTHELEYLDDMDFILHISNGTIDFCGSWE 224
Query: 165 QLLASGLD 172
+ + D
Sbjct: 225 EFVEREFD 232
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 26/35 (74%)
Query: 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHV 82
LSGGQ+ R++LARA+ K + LLD+P S +DA +
Sbjct: 141 LSGGQQQRVALARALVKDPSLLLLDEPFSNLDARM 175
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 39.7 bits (91), Expect = 0.001, Method: Composition-based stats.
Identities = 16/33 (48%), Positives = 26/33 (78%)
Query: 47 SLSGGQRARISLARAVYKRADVYLLDDPLSAVD 79
+LSGG + +++LARAV + AD+ LLD+P + +D
Sbjct: 542 ALSGGWKXKLALARAVLRNADILLLDEPTNHLD 574
Score = 31.6 bits (70), Expect = 0.36, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 22/32 (68%)
Query: 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVD 79
LSGGQ+ ++ LA ++R + +LD+P + +D
Sbjct: 896 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLD 927
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 39.7 bits (91), Expect = 0.001, Method: Composition-based stats.
Identities = 16/33 (48%), Positives = 26/33 (78%)
Query: 47 SLSGGQRARISLARAVYKRADVYLLDDPLSAVD 79
+LSGG + +++LARAV + AD+ LLD+P + +D
Sbjct: 548 ALSGGWKXKLALARAVLRNADILLLDEPTNHLD 580
Score = 31.6 bits (70), Expect = 0.36, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 22/32 (68%)
Query: 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVD 79
LSGGQ+ ++ LA ++R + +LD+P + +D
Sbjct: 902 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLD 933
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 39.3 bits (90), Expect = 0.001, Method: Composition-based stats.
Identities = 16/33 (48%), Positives = 26/33 (78%)
Query: 47 SLSGGQRARISLARAVYKRADVYLLDDPLSAVD 79
+LSGG + +++LARAV + AD+ LLD+P + +D
Sbjct: 548 ALSGGWKMKLALARAVLRNADILLLDEPTNHLD 580
Score = 31.6 bits (70), Expect = 0.35, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 22/32 (68%)
Query: 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVD 79
LSGGQ+ ++ LA ++R + +LD+P + +D
Sbjct: 902 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLD 933
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 23/33 (69%)
Query: 47 SLSGGQRARISLARAVYKRADVYLLDDPLSAVD 79
SLSGGQR I +ARA+ + LLD+P SA+D
Sbjct: 128 SLSGGQRQLILIARAIASECKLILLDEPTSALD 160
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna
Length = 916
Score = 38.5 bits (88), Expect = 0.003, Method: Composition-based stats.
Identities = 43/168 (25%), Positives = 67/168 (39%), Gaps = 54/168 (32%)
Query: 28 EDFAQLPSGDRTL------------VGDKGVSLSGGQRARISLARAVYKR---ADVYLLD 72
E F +PS RTL +G +LSGG+ RI LA + KR +Y+LD
Sbjct: 774 EFFKNIPSIKRTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILD 833
Query: 73 DPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKT 132
+P VG H FED VR + ++ + T
Sbjct: 834 EPT------VGLH-FED--------------------------VRKLVEVLHRLVDRGNT 860
Query: 133 VMLITHQIQYLTHVDHVMLL------EKGSVEAFGTTTQLLASGLDFT 174
V++I H + + + DH++ L E G + A GT ++ + +T
Sbjct: 861 VIVIEHNLDVIKNADHIIDLGPEGGKEGGYIVATGTPEEIAKNPHSYT 908
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 37/87 (42%), Gaps = 7/87 (8%)
Query: 11 GHPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYL 70
H D +V L+ Q P ++ D G LS G + + LAR+V +A + L
Sbjct: 119 AHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILL 178
Query: 71 LDDPLSAVDA-------HVGKHLFEDC 90
LD+P + +D K F DC
Sbjct: 179 LDEPSAHLDPVTYQIIRRTLKQAFADC 205
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 25/35 (71%)
Query: 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHV 82
LSG Q+ R++LARA+ K + LLD+P S +DA +
Sbjct: 141 LSGAQQQRVALARALVKDPSLLLLDEPFSNLDARM 175
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 10/68 (14%)
Query: 21 VKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDA 80
+K+ L+E FA K LSGGQ+ R+++ARA+ + L D P A+D+
Sbjct: 129 LKMAELEERFAN----------HKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDS 178
Query: 81 HVGKHLFE 88
G+ + +
Sbjct: 179 KTGEKIMQ 186
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 48/112 (42%), Gaps = 32/112 (28%)
Query: 47 SLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWG 106
LSGGQ+ R+++ARA+ + L D+P A+D+ G+ + + + + + G
Sbjct: 145 QLSGGQQQRVAIARALANNPPIILADEPTGALDSKTGEKIXQ--------LLKKLNEEDG 196
Query: 107 RSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVE 158
KTV+++TH I + ++ L+ G VE
Sbjct: 197 ------------------------KTVVVVTHDINVARFGERIIYLKDGEVE 224
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 23/33 (69%)
Query: 47 SLSGGQRARISLARAVYKRADVYLLDDPLSAVD 79
SLSGGQ R+++ARA+ + L D+P SA+D
Sbjct: 159 SLSGGQAQRVAIARALAMEPKIMLFDEPTSALD 191
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 23/33 (69%)
Query: 47 SLSGGQRARISLARAVYKRADVYLLDDPLSAVD 79
SLSGGQ R+++ARA+ + L D+P SA+D
Sbjct: 138 SLSGGQAQRVAIARALAMEPKIMLFDEPTSALD 170
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 10/68 (14%)
Query: 21 VKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDA 80
+K+ L+E FA K LSGGQ+ R+++ARA+ + L D P A+D+
Sbjct: 129 LKMAELEERFA----------NHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDS 178
Query: 81 HVGKHLFE 88
G+ + +
Sbjct: 179 KTGEKIMQ 186
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 36.2 bits (82), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 26/42 (61%)
Query: 47 SLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFE 88
+LSGGQ+ R+++ARA+ V L D+ SA+D + + E
Sbjct: 140 NLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILE 181
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 35.0 bits (79), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 25/42 (59%)
Query: 47 SLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFE 88
+LSGGQ+ R+++ARA+ V L D SA+D + + E
Sbjct: 163 NLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILE 204
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 35.0 bits (79), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 25/42 (59%)
Query: 47 SLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFE 88
+LSGGQ+ R+++ARA+ V L D SA+D + + E
Sbjct: 163 NLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILE 204
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 34.7 bits (78), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 24/35 (68%)
Query: 47 SLSGGQRARISLARAVYKRADVYLLDDPLSAVDAH 81
LSGG+ R+++A + + AD+YLLD+P + +D
Sbjct: 401 ELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVE 435
Score = 31.2 bits (69), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVD 79
LSGG+ R+++A A+ + A Y D+P S +D
Sbjct: 159 LSGGELQRVAIAAALLRNATFYFFDEPSSYLD 190
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 34.7 bits (78), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Query: 43 DKGVS-LSGGQRARISLARAVYKRADVYLLDDPLSAVDAH 81
D+ V LSGG+ R+++A + + AD+YLLD+P + +D
Sbjct: 466 DRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVE 505
Score = 32.3 bits (72), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 47 SLSGGQRARISLARAVYKRADVYLLDDPLSAVD 79
LSGG+ R+++A A+ ++A Y D+P S +D
Sbjct: 228 QLSGGELQRVAIAAALLRKAHFYFFDEPSSYLD 260
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 34.7 bits (78), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Query: 43 DKGVS-LSGGQRARISLARAVYKRADVYLLDDPLSAVDAH 81
D+ V LSGG+ R+++A + + AD+YLLD+P + +D
Sbjct: 452 DRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVE 491
Score = 32.3 bits (72), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 47 SLSGGQRARISLARAVYKRADVYLLDDPLSAVD 79
LSGG+ R+++A A+ ++A Y D+P S +D
Sbjct: 214 QLSGGELQRVAIAAALLRKAHFYFFDEPSSYLD 246
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 33.5 bits (75), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGL-HTGVPRFDSRWG 106
LS G R+ LA + A++Y+LDDP+ A+D + + + L G+ SR
Sbjct: 134 LSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREE 193
Query: 107 RSF 109
S+
Sbjct: 194 LSY 196
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 32.7 bits (73), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVDA 80
LSGG+ R ++ + + ADVY+ D+P S +D
Sbjct: 222 LSGGELQRFAIGMSCVQEADVYMFDEPSSYLDV 254
Score = 31.6 bits (70), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 24/34 (70%)
Query: 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVDAH 81
LSGG+ R+++ A+ AD+YL+D+P + +D+
Sbjct: 468 LSGGELQRVAIVLALGIPADIYLIDEPSAYLDSE 501
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 32.3 bits (72), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVDAH 81
LSGG+ ++ +A + K AD+Y+LD P S +D
Sbjct: 386 LSGGELQKLYIAATLAKEADLYVLDQPSSYLDVE 419
Score = 30.8 bits (68), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVDAH 81
LSGG R+ +A ++ + ADVY+ D P S +D
Sbjct: 139 LSGGGLQRLLVAASLLREADVYIFDQPSSYLDVR 172
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 32.0 bits (71), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 25/43 (58%)
Query: 46 VSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFE 88
+ LSGG + R+ +A A+ V +LD+P SA+D H+ +
Sbjct: 153 LQLSGGMKQRVLIALALLLDPVVLILDEPTSALDVLTQAHIIQ 195
>pdb|3ZQJ|A Chain A, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|B Chain B, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|C Chain C, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|D Chain D, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|E Chain E, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|F Chain F, Mycobacterium Tuberculosis Uvra
Length = 993
Score = 31.6 bits (70), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 48/115 (41%), Gaps = 36/115 (31%)
Query: 41 VGDKGVSLSGGQRARISLARAVYKRA---DVYLLDDPLSAVDAHVGKHLFEDCITGLHTG 97
+G +LSGG+ R+ LA + KR+ VY+LD+P TGLH
Sbjct: 857 LGQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEP----------------TTGLH-- 898
Query: 98 VPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLL 152
FD +R L+++ K TV++I H + + D ++ L
Sbjct: 899 ---FDD------------IRKLLNVINGLVDKGNTVIVIEHNLDVIKTSDWIIDL 938
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 30.0 bits (66), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 22/32 (68%)
Query: 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVD 79
LS G++ R+ +ARA+ + V +LD+P + +D
Sbjct: 162 LSTGEKQRVXIARALXGQPQVLILDEPAAGLD 193
>pdb|1DIO|A Chain A, Diol Dehydratase-Cyanocobalamin Complex From Klebsiella
Oxytoca
pdb|1DIO|L Chain L, Diol Dehydratase-Cyanocobalamin Complex From Klebsiella
Oxytoca
pdb|1EGM|A Chain A, Crystal Structure Of Diol Dehydratase-Cyanocobalamin
Complex At 100k.
pdb|1EGM|L Chain L, Crystal Structure Of Diol Dehydratase-Cyanocobalamin
Complex At 100k.
pdb|1EEX|A Chain A, Crystal Structure Of The Diol Dehydratase-
Adeninylpentylcobalamin Complex From Klebsiella Oxytoca
pdb|1EEX|L Chain L, Crystal Structure Of The Diol Dehydratase-
Adeninylpentylcobalamin Complex From Klebsiella Oxytoca
pdb|1EGV|A Chain A, Crystal Structure Of The Diol Dehydratase-
Adeninylpentylcobalamin Complex From Klebsella Oxytoca
Under The Illuminated Condition.
pdb|1EGV|L Chain L, Crystal Structure Of The Diol Dehydratase-
Adeninylpentylcobalamin Complex From Klebsella Oxytoca
Under The Illuminated Condition.
pdb|1IWB|A Chain A, Crystal Structure Of Diol Dehydratase
pdb|1IWB|L Chain L, Crystal Structure Of Diol Dehydratase
pdb|1UC4|A Chain A, Structure Of Diol Dehydratase Complexed With (S)-1,2-
Propanediol
pdb|1UC4|L Chain L, Structure Of Diol Dehydratase Complexed With (S)-1,2-
Propanediol
pdb|1UC5|A Chain A, Structure Of Diol Dehydratase Complexed With (r)-1,2-
Propanediol
pdb|1UC5|L Chain L, Structure Of Diol Dehydratase Complexed With (r)-1,2-
Propanediol
pdb|3AUJ|A Chain A, Structure Of Diol Dehydratase Complexed With Glycerol
pdb|3AUJ|L Chain L, Structure Of Diol Dehydratase Complexed With Glycerol
Length = 554
Score = 30.0 bits (66), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 8/68 (11%)
Query: 102 DSRWGRSFFGSALGVRG--------ALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLE 153
D+ W + F S+ RG + S V+ + + K+++ + + Y+T V L+
Sbjct: 237 DTPWSKGFLASSYASRGLKMRFTSGSGSEVQMGYAEGKSMLYLEARCIYITKAAGVQGLQ 296
Query: 154 KGSVEAFG 161
GSV G
Sbjct: 297 NGSVSCIG 304
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 30.0 bits (66), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 35/60 (58%)
Query: 35 SGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGL 94
+G L G LSGGQ+ R +LARA+ ++ LLD+P SA+D + + + ED I L
Sbjct: 126 TGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAAL 185
>pdb|1DPG|A Chain A, Glucose 6-Phosphate Dehydrogenase From Leuconostoc
Mesenteroides
pdb|1DPG|B Chain B, Glucose 6-Phosphate Dehydrogenase From Leuconostoc
Mesenteroides
Length = 485
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 72 DDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSF 109
D+ L +D ++GK + ++ I L G P FD+ W + +
Sbjct: 170 DNQLFRIDHYLGKEMVQN-IAALRFGNPIFDAAWNKDY 206
>pdb|2DPG|A Chain A, Complex Of Inactive Mutant (H240->n) Of Glucose
6-Phosphate Dehydrogenase From Leuconostoc Mesenteroides
With Nadp+
Length = 485
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 72 DDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSF 109
D+ L +D ++GK + ++ I L G P FD+ W + +
Sbjct: 170 DNQLFRIDHYLGKEMVQN-IAALRFGNPIFDAAWNKDY 206
>pdb|1H93|A Chain A, Active Mutant (S215->c) Of Glucose 6-Phosphate
Dehydrogenase From Leuconostoc Mesenteroides
pdb|1H94|A Chain A, Complex Of Active Mutant (S215->c) Of Glucose 6-Phosphate
Dehydrogenase From L.Mesenteroides With Coenzyme Nad
Length = 485
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 72 DDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSF 109
D+ L +D ++GK + ++ I L G P FD+ W + +
Sbjct: 170 DNQLFRIDHYLGKEMVQN-IAALRFGNPIFDAAWNKDY 206
>pdb|1E77|A Chain A, Complex Of Active Mutant (Q365->c) Of Glucose 6-Phosphate
Dehydrogenase From Leuconostoc Mesenteroides With
Substrate
pdb|1H9A|A Chain A, Complex Of Active Mutant (Q365->c) Of Glucose 6-Phosphate
Dehydrogenase From L. Mesenteroides With Coenzyme Nadp
pdb|1H9B|A Chain A, Active Mutant (Q365->c) Of Glucose 6-Phosphate
Dehydrogenase From Leuconostoc Mesenteroides
Length = 485
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 72 DDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSF 109
D+ L +D ++GK + ++ I L G P FD+ W + +
Sbjct: 170 DNQLFRIDHYLGKEMVQN-IAALRFGNPIFDAAWNKDY 206
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 30 FAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDA 80
++L GD+ + K LSGG++ R+++ARA+ + D+P +D+
Sbjct: 125 LSELGLGDK--LSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDS 173
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 28.1 bits (61), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 23/44 (52%)
Query: 44 KGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLF 87
K LSGGQ + + RA+ + ++D+P++ V + +F
Sbjct: 150 KAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIF 193
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 28.1 bits (61), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 23/44 (52%)
Query: 44 KGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLF 87
K LSGGQ + + RA+ + ++D+P++ V + +F
Sbjct: 150 KAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIF 193
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 27.7 bits (60), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 12/48 (25%), Positives = 23/48 (47%)
Query: 44 KGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCI 91
K LSGGQ + + RA+ + ++D P++ V + +F +
Sbjct: 150 KAGELSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAPGLAHDIFNHVL 197
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 27.3 bits (59), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 20/32 (62%)
Query: 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVD 79
LS GQ+ R+++A + V +LD+P + +D
Sbjct: 144 LSFGQKKRVAIAGVLVMEPKVLILDEPTAGLD 175
>pdb|3II0|A Chain A, Crystal Structure Of Human Glutamate Oxaloacetate
Transaminase 1 (Got1)
pdb|3II0|B Chain B, Crystal Structure Of Human Glutamate Oxaloacetate
Transaminase 1 (Got1)
pdb|3II0|C Chain C, Crystal Structure Of Human Glutamate Oxaloacetate
Transaminase 1 (Got1)
pdb|3II0|D Chain D, Crystal Structure Of Human Glutamate Oxaloacetate
Transaminase 1 (Got1)
Length = 422
Score = 26.9 bits (58), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 139 QIQYLTHVDHVMLLEKGSVEAFGTTTQLL 167
Q++YL + H+ LL G + G TT+ L
Sbjct: 358 QVEYLVNEKHIYLLPSGRINVSGLTTKNL 386
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,347,811
Number of Sequences: 62578
Number of extensions: 253493
Number of successful extensions: 694
Number of sequences better than 100.0: 95
Number of HSP's better than 100.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 552
Number of HSP's gapped (non-prelim): 150
length of query: 209
length of database: 14,973,337
effective HSP length: 94
effective length of query: 115
effective length of database: 9,091,005
effective search space: 1045465575
effective search space used: 1045465575
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)