Query psy12535
Match_columns 209
No_of_seqs 255 out of 2325
Neff 6.1
Searched_HMMs 46136
Date Fri Aug 16 21:47:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12535.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12535hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11174 cysteine/glutathione 100.0 7.3E-34 1.6E-38 269.9 1.8 138 10-181 448-585 (588)
2 COG2274 SunT ABC-type bacterio 100.0 2.6E-33 5.6E-38 272.7 3.2 138 9-180 571-708 (709)
3 KOG0058|consensus 100.0 3.3E-33 7.2E-38 267.9 3.0 137 11-181 568-705 (716)
4 KOG0055|consensus 100.0 7.3E-33 1.6E-37 277.5 4.5 135 12-180 1091-1225(1228)
5 COG1132 MdlB ABC-type multidru 100.0 9E-33 1.9E-37 261.8 2.7 136 12-181 430-565 (567)
6 KOG0054|consensus 100.0 8.5E-32 1.8E-36 274.0 5.2 140 7-179 603-742 (1381)
7 KOG0055|consensus 100.0 3.9E-32 8.5E-37 272.3 2.6 138 11-182 453-590 (1228)
8 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 1.5E-31 3.2E-36 259.5 3.9 132 10-177 578-709 (710)
9 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 1.9E-31 4.2E-36 258.0 3.1 131 12-178 553-683 (686)
10 PRK10790 putative multidrug tr 100.0 2.1E-31 4.6E-36 253.4 2.6 136 11-180 440-575 (592)
11 PRK11176 lipid transporter ATP 100.0 2.8E-31 6E-36 251.7 2.9 134 12-179 445-578 (582)
12 COG4987 CydC ABC-type transpor 100.0 7.6E-31 1.6E-35 245.3 3.6 136 9-178 436-571 (573)
13 TIGR01193 bacteriocin_ABC ABC- 100.0 1.2E-30 2.6E-35 253.3 4.3 134 10-178 574-707 (708)
14 PRK13657 cyclic beta-1,2-gluca 100.0 7.9E-31 1.7E-35 249.5 2.1 137 11-181 435-571 (588)
15 PTZ00265 multidrug resistance 100.0 1.3E-30 2.8E-35 270.0 3.5 137 10-179 1321-1464(1466)
16 PLN03232 ABC transporter C fam 100.0 1.5E-30 3.3E-35 270.0 3.3 139 8-179 701-839 (1495)
17 KOG0057|consensus 100.0 2.3E-30 5E-35 242.4 4.0 137 11-181 451-587 (591)
18 TIGR00958 3a01208 Conjugate Tr 100.0 2E-30 4.4E-35 252.5 3.7 130 11-176 581-710 (711)
19 COG4988 CydD ABC-type transpor 100.0 1.4E-30 3.1E-35 245.3 1.8 137 10-181 420-556 (559)
20 PRK11160 cysteine/glutathione 100.0 2.8E-30 6E-35 245.9 3.3 133 11-178 440-572 (574)
21 PLN03130 ABC transporter C fam 100.0 2.9E-30 6.2E-35 269.4 3.1 138 8-178 701-838 (1622)
22 TIGR03375 type_I_sec_LssB type 100.0 5.6E-30 1.2E-34 248.0 3.6 125 11-169 565-689 (694)
23 TIGR02203 MsbA_lipidA lipid A 100.0 5.2E-30 1.1E-34 242.1 2.6 134 11-178 433-566 (571)
24 COG1126 GlnQ ABC-type polar am 100.0 1.6E-29 3.4E-34 215.0 4.4 108 20-171 120-228 (240)
25 COG5265 ATM1 ABC-type transpor 100.0 1.8E-29 3.8E-34 231.0 4.6 136 9-178 361-496 (497)
26 TIGR01846 type_I_sec_HlyB type 100.0 1.5E-29 3.3E-34 245.2 3.5 136 10-179 556-691 (694)
27 TIGR00957 MRP_assoc_pro multi 99.9 2.8E-29 6E-34 261.1 3.2 135 11-179 1385-1519(1522)
28 PLN03232 ABC transporter C fam 99.9 5.2E-29 1.1E-33 258.7 3.4 137 11-181 1335-1472(1495)
29 PRK10789 putative multidrug tr 99.9 5.3E-29 1.1E-33 236.8 3.1 136 11-180 415-550 (569)
30 PLN03130 ABC transporter C fam 99.9 4.2E-29 9.1E-34 260.7 2.2 136 11-180 1338-1474(1622)
31 KOG0056|consensus 99.9 6.9E-29 1.5E-33 230.8 3.2 139 10-182 637-776 (790)
32 TIGR02204 MsbA_rel ABC transpo 99.9 1.3E-28 2.8E-33 233.0 3.9 134 12-179 441-574 (576)
33 COG1135 AbcC ABC-type metal io 99.9 6.7E-29 1.5E-33 220.1 0.8 103 36-171 130-234 (339)
34 TIGR01192 chvA glucan exporter 99.9 1.4E-28 3E-33 234.8 3.0 135 12-180 436-570 (585)
35 TIGR01842 type_I_sec_PrtD type 99.9 1.9E-28 4.1E-33 231.5 3.6 124 12-168 419-542 (544)
36 COG4618 ArpD ABC-type protease 99.9 1.6E-28 3.5E-33 228.6 2.9 131 6-169 431-561 (580)
37 PTZ00243 ABC transporter; Prov 99.9 1.3E-28 2.9E-33 256.4 2.4 136 11-180 1409-1546(1560)
38 TIGR01271 CFTR_protein cystic 99.9 8.1E-28 1.7E-32 249.8 1.7 136 11-180 1317-1452(1490)
39 COG1122 CbiO ABC-type cobalt t 99.9 2.6E-27 5.6E-32 204.3 2.2 125 2-170 104-230 (235)
40 cd03289 ABCC_CFTR2 The CFTR su 99.9 3.6E-27 7.8E-32 207.0 2.5 133 14-180 105-237 (275)
41 PTZ00265 multidrug resistance 99.9 7E-27 1.5E-31 242.3 3.3 135 13-180 545-728 (1466)
42 COG4175 ProV ABC-type proline/ 99.9 9.5E-27 2.1E-31 207.2 1.9 114 15-171 143-257 (386)
43 TIGR00957 MRP_assoc_pro multi 99.9 2.2E-26 4.8E-31 239.4 3.9 136 11-177 724-859 (1522)
44 COG1124 DppF ABC-type dipeptid 99.9 1.3E-26 2.8E-31 199.7 1.4 94 43-169 137-232 (252)
45 COG1125 OpuBA ABC-type proline 99.9 2E-26 4.4E-31 200.3 1.6 98 42-171 130-228 (309)
46 COG1117 PstB ABC-type phosphat 99.9 1.3E-26 2.9E-31 197.1 -1.6 115 15-170 124-239 (253)
47 TIGR01271 CFTR_protein cystic 99.9 6.1E-26 1.3E-30 235.8 2.8 134 9-175 510-643 (1490)
48 cd03252 ABCC_Hemolysin The ABC 99.9 2.3E-25 5.1E-30 189.2 5.8 120 24-177 115-234 (237)
49 TIGR02857 CydD thiol reductant 99.9 6.7E-26 1.4E-30 213.0 1.6 108 11-152 422-529 (529)
50 COG0444 DppD ABC-type dipeptid 99.9 6.1E-25 1.3E-29 195.6 6.6 131 42-205 148-289 (316)
51 COG1127 Ttg2A ABC-type transpo 99.9 4.3E-25 9.3E-30 190.3 4.7 104 44-180 142-248 (263)
52 COG1120 FepC ABC-type cobalami 99.9 2.1E-25 4.7E-30 194.5 2.3 94 43-169 134-229 (258)
53 TIGR02868 CydC thiol reductant 99.9 1.6E-25 3.5E-30 210.4 1.2 97 10-140 433-529 (529)
54 cd03253 ABCC_ATM1_transporter 99.9 4.9E-25 1.1E-29 186.9 4.0 120 21-174 111-230 (236)
55 cd03251 ABCC_MsbA MsbA is an e 99.9 2.2E-24 4.8E-29 182.6 6.8 115 24-172 115-229 (234)
56 COG4598 HisP ABC-type histidin 99.9 7.6E-25 1.6E-29 183.0 3.3 96 43-171 148-244 (256)
57 COG1116 TauB ABC-type nitrate/ 99.9 4.5E-25 9.8E-30 190.7 2.0 97 16-155 110-207 (248)
58 COG3839 MalK ABC-type sugar tr 99.9 6.3E-25 1.4E-29 197.9 2.3 115 14-171 111-226 (338)
59 TIGR02314 ABC_MetN D-methionin 99.9 6.9E-25 1.5E-29 198.2 2.3 101 36-169 129-231 (343)
60 COG1136 SalX ABC-type antimicr 99.9 7.7E-25 1.7E-29 187.8 2.1 83 43-158 138-221 (226)
61 cd03254 ABCC_Glucan_exporter_l 99.9 1.6E-24 3.6E-29 182.9 4.0 115 21-169 113-227 (229)
62 TIGR01194 cyc_pep_trnsptr cycl 99.9 7.6E-25 1.6E-29 207.9 2.0 112 12-160 440-551 (555)
63 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.9 2.8E-24 6E-29 182.7 5.2 114 23-170 115-228 (238)
64 cd03261 ABC_Org_Solvent_Resist 99.9 3E-24 6.5E-29 182.4 5.1 101 36-169 125-227 (235)
65 COG3840 ThiQ ABC-type thiamine 99.9 1.7E-24 3.7E-29 180.8 2.9 113 15-170 108-221 (231)
66 PTZ00243 ABC transporter; Prov 99.9 1.1E-24 2.3E-29 227.2 1.8 122 15-169 750-871 (1560)
67 cd03288 ABCC_SUR2 The SUR doma 99.9 3.6E-24 7.9E-29 184.9 4.7 117 20-170 129-245 (257)
68 COG1121 ZnuC ABC-type Mn/Zn tr 99.9 4.1E-24 8.8E-29 186.0 4.9 94 42-169 134-228 (254)
69 PRK14257 phosphate ABC transpo 99.9 5.7E-24 1.2E-28 191.1 5.5 102 35-170 213-315 (329)
70 TIGR01186 proV glycine betaine 99.9 7.7E-25 1.7E-29 199.3 -0.4 102 36-170 118-221 (363)
71 COG3842 PotA ABC-type spermidi 99.9 1.3E-24 2.8E-29 196.8 0.9 112 16-170 116-228 (352)
72 COG1118 CysA ABC-type sulfate/ 99.9 3.3E-24 7.2E-29 190.2 3.3 109 17-169 118-228 (345)
73 cd03245 ABCC_bacteriocin_expor 99.9 5.5E-24 1.2E-28 178.7 4.1 109 19-161 112-220 (220)
74 PRK11650 ugpC glycerol-3-phosp 99.9 3E-24 6.6E-29 194.7 2.7 102 36-170 123-226 (356)
75 TIGR03258 PhnT 2-aminoethylpho 99.9 3.8E-24 8.2E-29 194.6 3.2 102 36-170 126-230 (362)
76 COG1123 ATPase components of v 99.9 7.9E-24 1.7E-28 199.8 4.7 102 42-176 149-253 (539)
77 cd03219 ABC_Mj1267_LivG_branch 99.9 1.3E-23 2.8E-28 178.1 5.1 100 36-168 132-232 (236)
78 cd03256 ABC_PhnC_transporter A 99.9 1.3E-23 2.7E-28 178.5 5.1 99 36-167 133-233 (241)
79 COG1123 ATPase components of v 99.9 1.3E-23 2.9E-28 198.3 5.6 104 40-176 422-528 (539)
80 PRK11432 fbpC ferric transport 99.9 2.5E-24 5.4E-29 195.0 0.5 101 37-170 126-228 (351)
81 PRK11022 dppD dipeptide transp 99.9 1.4E-23 2.9E-28 188.2 5.0 98 40-170 146-245 (326)
82 cd03244 ABCC_MRP_domain2 Domai 99.9 1.1E-23 2.3E-28 177.0 3.8 109 20-162 112-220 (221)
83 PRK13651 cobalt transporter AT 99.9 3E-24 6.6E-29 190.8 0.5 97 40-169 158-255 (305)
84 PRK09473 oppD oligopeptide tra 99.9 1.6E-23 3.4E-28 188.2 5.1 98 40-170 154-253 (330)
85 PRK15093 antimicrobial peptide 99.9 1.6E-23 3.6E-28 187.8 5.0 97 41-170 152-250 (330)
86 TIGR01188 drrA daunorubicin re 99.9 1.7E-23 3.7E-28 185.0 5.0 101 36-169 113-214 (302)
87 PRK11308 dppF dipeptide transp 99.9 7.7E-24 1.7E-28 190.0 2.7 97 41-170 148-246 (327)
88 PRK13650 cbiO cobalt transport 99.9 4E-24 8.7E-29 187.1 0.8 100 37-169 130-230 (279)
89 PRK13631 cbiO cobalt transport 99.9 2E-23 4.4E-28 186.7 5.4 98 39-169 168-266 (320)
90 PRK15079 oligopeptide ABC tran 99.9 7.9E-24 1.7E-28 190.3 2.6 98 40-170 154-253 (331)
91 KOG0054|consensus 99.9 1.6E-23 3.5E-28 213.8 5.0 137 2-172 1228-1366(1381)
92 cd03291 ABCC_CFTR1 The CFTR su 99.9 1.7E-23 3.8E-28 184.3 4.4 124 21-177 133-256 (282)
93 PRK10851 sulfate/thiosulfate t 99.9 9.7E-24 2.1E-28 191.3 2.8 101 37-170 126-228 (353)
94 TIGR03265 PhnT2 putative 2-ami 99.9 2.2E-23 4.8E-28 188.9 5.0 102 36-170 123-226 (353)
95 PRK13537 nodulation ABC transp 99.9 2.3E-23 5E-28 185.1 4.9 97 40-169 131-228 (306)
96 PRK13637 cbiO cobalt transport 99.9 3E-23 6.4E-28 182.5 5.5 98 39-169 136-235 (287)
97 TIGR02315 ABC_phnC phosphonate 99.9 2.9E-23 6.2E-28 176.7 4.8 99 36-167 134-234 (243)
98 cd03296 ABC_CysA_sulfate_impor 99.9 2.9E-23 6.3E-28 176.9 4.8 101 36-169 125-227 (239)
99 TIGR03864 PQQ_ABC_ATP ABC tran 99.9 3.5E-23 7.7E-28 176.1 5.3 101 36-169 121-222 (236)
100 cd03218 ABC_YhbG The ABC trans 99.9 3.4E-23 7.4E-28 175.1 5.0 100 36-168 122-222 (232)
101 COG4172 ABC-type uncharacteriz 99.9 1.9E-23 4E-28 191.2 3.6 96 43-171 422-519 (534)
102 PRK09452 potA putrescine/sperm 99.9 1.3E-23 2.9E-28 191.9 2.6 102 36-170 133-236 (375)
103 COG4555 NatA ABC-type Na+ tran 99.9 2.8E-23 6.1E-28 175.6 4.3 101 36-169 122-223 (245)
104 PRK13647 cbiO cobalt transport 99.9 1.5E-23 3.3E-28 183.0 2.5 95 40-167 131-226 (274)
105 PRK11264 putative amino-acid A 99.9 5E-23 1.1E-27 176.1 5.6 101 36-169 133-234 (250)
106 PRK13643 cbiO cobalt transport 99.9 5.2E-23 1.1E-27 181.0 5.6 97 40-169 137-234 (288)
107 TIGR01288 nodI ATP-binding ABC 99.9 4E-23 8.8E-28 182.7 4.7 100 37-169 125-225 (303)
108 cd03224 ABC_TM1139_LivF_branch 99.9 4.2E-23 9.2E-28 173.3 4.5 98 38-168 123-221 (222)
109 TIGR01187 potA spermidine/putr 99.9 5E-23 1.1E-27 184.3 5.3 101 36-169 89-191 (325)
110 PRK11000 maltose/maltodextrin 99.9 4.5E-23 9.9E-28 187.7 5.0 101 36-169 122-224 (369)
111 cd03265 ABC_DrrA DrrA is the A 99.9 4.3E-23 9.4E-28 173.7 4.5 97 37-166 121-219 (220)
112 cd03259 ABC_Carb_Solutes_like 99.9 3.7E-23 8.1E-28 173.0 4.0 93 36-161 119-213 (213)
113 PRK11153 metN DL-methionine tr 99.9 4.9E-23 1.1E-27 185.7 5.0 101 36-169 129-231 (343)
114 cd03258 ABC_MetN_methionine_tr 99.9 5.2E-23 1.1E-27 174.3 4.8 100 36-168 129-230 (233)
115 TIGR02770 nickel_nikD nickel i 99.9 5.9E-23 1.3E-27 174.3 5.1 98 39-169 117-216 (230)
116 PRK13633 cobalt transporter AT 99.9 3.8E-23 8.1E-28 180.9 3.7 101 36-169 133-234 (280)
117 COG4161 ArtP ABC-type arginine 99.9 5.2E-23 1.1E-27 169.8 4.3 91 44-167 138-229 (242)
118 PRK13644 cbiO cobalt transport 99.9 6.3E-23 1.4E-27 179.1 5.1 101 36-169 125-225 (274)
119 PRK09493 glnQ glutamine ABC tr 99.9 5.9E-23 1.3E-27 174.9 4.8 101 36-169 125-226 (240)
120 PRK13634 cbiO cobalt transport 99.9 6.5E-23 1.4E-27 180.5 5.1 96 41-169 139-236 (290)
121 PRK13641 cbiO cobalt transport 99.9 7.8E-23 1.7E-27 179.6 5.4 97 40-169 138-235 (287)
122 cd03260 ABC_PstB_phosphate_tra 99.9 5.1E-23 1.1E-27 173.8 4.1 88 45-166 139-227 (227)
123 PRK13536 nodulation factor exp 99.9 6.6E-23 1.4E-27 185.0 4.9 97 40-169 165-262 (340)
124 cd03294 ABC_Pro_Gly_Bertaine T 99.9 7.5E-23 1.6E-27 178.1 5.0 101 36-169 149-251 (269)
125 PRK11144 modC molybdate transp 99.9 7.6E-23 1.6E-27 185.0 5.3 102 36-170 117-220 (352)
126 PRK13646 cbiO cobalt transport 99.9 8.2E-23 1.8E-27 179.4 5.3 101 36-169 133-236 (286)
127 PRK14245 phosphate ABC transpo 99.9 9.1E-23 2E-27 174.9 5.4 97 39-169 138-235 (250)
128 PRK13638 cbiO cobalt transport 99.9 8.8E-23 1.9E-27 177.5 5.2 97 40-169 129-226 (271)
129 PRK11300 livG leucine/isoleuci 99.9 7.9E-23 1.7E-27 175.4 4.9 100 36-168 142-243 (255)
130 cd03250 ABCC_MRP_domain1 Domai 99.9 5.4E-23 1.2E-27 171.2 3.6 107 18-156 98-204 (204)
131 TIGR02769 nickel_nikE nickel i 99.9 7.6E-23 1.6E-27 177.4 4.6 97 40-169 143-241 (265)
132 PRK11607 potG putrescine trans 99.9 3.8E-23 8.2E-28 189.0 2.7 102 37-170 139-241 (377)
133 COG1131 CcmA ABC-type multidru 99.9 1E-22 2.2E-27 180.3 5.3 95 42-169 131-227 (293)
134 PRK11701 phnK phosphonate C-P 99.9 1.1E-22 2.3E-27 175.5 5.1 98 39-169 143-242 (258)
135 PRK13636 cbiO cobalt transport 99.9 1E-22 2.2E-27 178.6 5.0 101 36-169 130-232 (283)
136 PRK13652 cbiO cobalt transport 99.9 7.1E-23 1.5E-27 178.9 3.9 100 37-169 127-228 (277)
137 TIGR02142 modC_ABC molybdenum 99.9 1E-22 2.2E-27 184.2 5.1 101 36-169 120-222 (354)
138 TIGR00972 3a0107s01c2 phosphat 99.9 1.2E-22 2.6E-27 173.9 5.2 97 39-169 136-233 (247)
139 PRK13635 cbiO cobalt transport 99.9 4.7E-23 1E-27 180.5 2.8 100 37-169 130-230 (279)
140 COG2884 FtsE Predicted ATPase 99.9 2.5E-23 5.3E-28 174.4 0.9 103 15-161 116-219 (223)
141 PRK11831 putative ABC transpor 99.9 1.1E-22 2.3E-27 177.0 4.8 100 37-169 133-234 (269)
142 PRK10619 histidine/lysine/argi 99.9 1.3E-22 2.9E-27 174.8 5.3 101 36-169 140-242 (257)
143 cd03226 ABC_cobalt_CbiO_domain 99.9 6.2E-23 1.3E-27 171.0 3.1 88 38-158 117-205 (205)
144 PRK11614 livF leucine/isoleuci 99.9 1.2E-22 2.7E-27 172.6 5.0 94 42-168 132-226 (237)
145 TIGR03411 urea_trans_UrtD urea 99.9 1.4E-22 3E-27 172.6 5.3 99 36-168 132-231 (242)
146 PRK09536 btuD corrinoid ABC tr 99.9 1.2E-22 2.6E-27 187.3 5.1 98 39-169 131-229 (402)
147 PRK13640 cbiO cobalt transport 99.9 5.7E-23 1.2E-27 180.1 2.7 101 36-169 132-233 (282)
148 cd03293 ABC_NrtD_SsuB_transpor 99.9 1.1E-22 2.3E-27 171.3 4.1 96 36-164 120-219 (220)
149 PRK10070 glycine betaine trans 99.9 5.5E-23 1.2E-27 189.4 2.6 101 36-169 153-255 (400)
150 TIGR00960 3a0501s02 Type II (G 99.9 1E-22 2.3E-27 170.7 4.0 88 37-157 128-216 (216)
151 PRK14273 phosphate ABC transpo 99.9 1.9E-22 4.1E-27 173.3 5.7 96 41-170 144-240 (254)
152 TIGR01184 ntrCD nitrate transp 99.9 8.7E-23 1.9E-27 173.6 3.6 98 36-166 103-202 (230)
153 TIGR03415 ABC_choXWV_ATP choli 99.9 1.3E-22 2.9E-27 185.9 5.0 101 36-169 153-255 (382)
154 cd03297 ABC_ModC_molybdenum_tr 99.9 1.2E-22 2.6E-27 170.3 4.2 93 36-161 120-214 (214)
155 COG4608 AppF ABC-type oligopep 99.9 1E-22 2.2E-27 178.0 3.9 95 44-171 106-202 (268)
156 PRK10895 lipopolysaccharide AB 99.9 1.5E-22 3.2E-27 172.5 4.9 100 36-168 126-226 (241)
157 PRK11124 artP arginine transpo 99.9 1.3E-22 2.8E-27 173.0 4.5 99 36-167 130-229 (242)
158 cd03295 ABC_OpuCA_Osmoprotecti 99.9 1.5E-22 3.2E-27 172.9 4.7 96 40-168 128-225 (242)
159 PRK14242 phosphate transporter 99.9 1.7E-22 3.6E-27 173.4 5.1 96 40-169 142-238 (253)
160 PRK10771 thiQ thiamine transpo 99.9 1.6E-22 3.6E-27 171.6 4.9 101 36-169 118-220 (232)
161 PRK13649 cbiO cobalt transport 99.9 2E-22 4.4E-27 175.8 5.4 97 40-169 138-235 (280)
162 PRK13642 cbiO cobalt transport 99.9 1.8E-22 3.9E-27 176.4 5.1 97 40-169 133-230 (277)
163 PRK13645 cbiO cobalt transport 99.9 1.8E-22 4E-27 177.1 5.1 97 40-169 143-241 (289)
164 TIGR03005 ectoine_ehuA ectoine 99.9 1.7E-22 3.6E-27 173.5 4.7 101 36-169 135-237 (252)
165 cd03301 ABC_MalK_N The N-termi 99.9 1.4E-22 3.1E-27 169.3 4.1 93 36-161 119-213 (213)
166 TIGR02211 LolD_lipo_ex lipopro 99.9 1.4E-22 3E-27 170.3 4.0 90 36-158 130-220 (221)
167 PRK10575 iron-hydroxamate tran 99.9 1.2E-22 2.5E-27 176.2 3.6 98 38-168 138-237 (265)
168 cd03257 ABC_NikE_OppD_transpor 99.9 1.5E-22 3.3E-27 170.3 4.2 90 39-161 137-228 (228)
169 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.9 1.4E-22 2.9E-27 170.0 3.8 89 36-157 129-218 (218)
170 PRK09984 phosphonate/organopho 99.9 1.5E-22 3.3E-27 174.9 4.2 97 37-166 142-240 (262)
171 PRK11231 fecE iron-dicitrate t 99.9 2.2E-22 4.8E-27 173.2 5.1 99 37-168 128-227 (255)
172 cd03266 ABC_NatA_sodium_export 99.9 1.4E-22 2.9E-27 170.0 3.6 93 36-161 125-218 (218)
173 cd03268 ABC_BcrA_bacitracin_re 99.9 1.3E-22 2.9E-27 169.1 3.6 93 36-161 115-208 (208)
174 PRK14268 phosphate ABC transpo 99.9 2.2E-22 4.7E-27 173.7 5.0 96 40-169 147-243 (258)
175 COG3638 ABC-type phosphate/pho 99.9 1.7E-22 3.7E-27 173.8 4.3 94 43-168 143-237 (258)
176 PRK13648 cbiO cobalt transport 99.9 2.6E-22 5.7E-27 174.3 5.4 98 40-170 135-233 (269)
177 TIGR01978 sufC FeS assembly AT 99.9 2.8E-22 6E-27 170.4 5.4 93 42-167 138-233 (243)
178 TIGR02323 CP_lyasePhnK phospho 99.9 2.3E-22 4.9E-27 172.6 4.8 98 39-169 140-239 (253)
179 TIGR03873 F420-0_ABC_ATP propo 99.9 3E-22 6.5E-27 172.5 5.4 99 37-168 127-226 (256)
180 PRK11629 lolD lipoprotein tran 99.9 2E-22 4.4E-27 171.1 4.3 94 36-162 134-228 (233)
181 TIGR03522 GldA_ABC_ATP gliding 99.9 3E-22 6.4E-27 177.2 5.3 100 36-169 122-222 (301)
182 cd03263 ABC_subfamily_A The AB 99.9 2.2E-22 4.7E-27 169.0 4.2 96 37-166 123-219 (220)
183 PRK14250 phosphate ABC transpo 99.9 3.2E-22 7E-27 171.1 5.2 97 40-169 124-222 (241)
184 PRK10418 nikD nickel transport 99.9 2.9E-22 6.2E-27 172.6 4.9 97 40-169 133-231 (254)
185 PRK13639 cbiO cobalt transport 99.9 3.1E-22 6.8E-27 174.7 5.2 98 39-169 129-227 (275)
186 cd03248 ABCC_TAP TAP, the Tran 99.9 2.7E-22 5.7E-27 169.3 4.5 99 25-157 128-226 (226)
187 TIGR03771 anch_rpt_ABC anchore 99.9 2.9E-22 6.3E-27 169.7 4.7 99 37-169 103-202 (223)
188 PRK14239 phosphate transporter 99.9 3.4E-22 7.3E-27 171.2 5.1 96 40-169 141-237 (252)
189 TIGR03410 urea_trans_UrtE urea 99.9 2.4E-22 5.1E-27 170.0 4.0 95 39-166 123-219 (230)
190 PRK14247 phosphate ABC transpo 99.9 3.8E-22 8.3E-27 170.9 5.2 96 40-169 139-235 (250)
191 PRK13632 cbiO cobalt transport 99.9 3.7E-22 8.1E-27 173.7 5.1 101 36-169 131-232 (271)
192 cd03225 ABC_cobalt_CbiO_domain 99.9 3E-22 6.4E-27 167.1 4.1 88 36-156 123-211 (211)
193 PRK10261 glutathione transport 99.9 1.5E-22 3.2E-27 195.0 2.6 97 40-169 456-554 (623)
194 PRK14274 phosphate ABC transpo 99.9 4.4E-22 9.6E-27 171.7 5.3 96 40-169 148-244 (259)
195 PRK14244 phosphate ABC transpo 99.9 3.7E-22 8.1E-27 171.2 4.8 96 40-169 142-238 (251)
196 PRK14269 phosphate ABC transpo 99.9 5.2E-22 1.1E-26 170.0 5.6 96 40-169 135-231 (246)
197 cd03298 ABC_ThiQ_thiamine_tran 99.9 3.5E-22 7.6E-27 166.9 4.3 92 37-161 118-211 (211)
198 PRK10744 pstB phosphate transp 99.9 3.9E-22 8.3E-27 172.3 4.7 97 39-169 148-245 (260)
199 PRK14267 phosphate ABC transpo 99.9 4.7E-22 1E-26 170.6 5.2 96 40-169 142-238 (253)
200 PRK10253 iron-enterobactin tra 99.9 4.9E-22 1.1E-26 172.3 5.3 100 36-168 132-233 (265)
201 PRK14248 phosphate ABC transpo 99.9 5.3E-22 1.2E-26 172.2 5.5 96 40-169 157-253 (268)
202 PRK14249 phosphate ABC transpo 99.8 4.9E-22 1.1E-26 170.5 5.0 97 39-169 139-236 (251)
203 PRK10419 nikE nickel transport 99.8 4.3E-22 9.4E-27 173.2 4.8 105 36-173 139-246 (268)
204 cd03235 ABC_Metallic_Cations A 99.8 4.1E-22 8.9E-27 166.7 4.1 92 36-161 121-213 (213)
205 cd03264 ABC_drug_resistance_li 99.8 4.2E-22 9.2E-27 166.4 4.1 87 41-161 124-211 (211)
206 PRK13548 hmuV hemin importer A 99.8 5.7E-22 1.2E-26 171.5 5.0 100 36-168 123-230 (258)
207 PRK10584 putative ABC transpor 99.8 1.8E-22 3.9E-27 170.5 1.8 89 39-160 138-227 (228)
208 PRK10938 putative molybdenum t 99.8 6.5E-22 1.4E-26 184.8 5.6 100 36-168 124-224 (490)
209 cd03269 ABC_putative_ATPase Th 99.8 3.9E-22 8.5E-27 166.5 3.6 93 36-161 117-210 (210)
210 PRK13546 teichoic acids export 99.8 5.1E-22 1.1E-26 173.2 4.4 109 37-178 133-242 (264)
211 PRK14251 phosphate ABC transpo 99.8 7.2E-22 1.6E-26 169.3 5.2 95 41-169 141-236 (251)
212 PRK14270 phosphate ABC transpo 99.8 6.2E-22 1.3E-26 169.9 4.8 96 40-169 140-236 (251)
213 PRK14240 phosphate transporter 99.8 8.2E-22 1.8E-26 168.8 5.5 96 40-169 139-235 (250)
214 PRK15112 antimicrobial peptide 99.8 7.8E-22 1.7E-26 171.4 5.4 96 42-170 144-241 (267)
215 PRK03695 vitamin B12-transport 99.8 7.5E-22 1.6E-26 169.8 5.2 100 36-168 115-222 (248)
216 cd03214 ABC_Iron-Siderophores_ 99.8 6.6E-22 1.4E-26 162.3 4.6 91 38-161 88-180 (180)
217 cd03290 ABCC_SUR1_N The SUR do 99.8 4.1E-22 8.8E-27 167.5 3.2 106 19-156 112-218 (218)
218 PRK14272 phosphate ABC transpo 99.8 9.3E-22 2E-26 168.5 5.5 95 41-169 142-237 (252)
219 PRK15134 microcin C ABC transp 99.8 6.4E-22 1.4E-26 186.7 4.9 96 41-169 150-247 (529)
220 CHL00131 ycf16 sulfate ABC tra 99.8 9.1E-22 2E-26 168.5 5.3 93 40-165 143-238 (252)
221 PRK14253 phosphate ABC transpo 99.8 8E-22 1.7E-26 168.8 5.0 96 39-168 137-233 (249)
222 PRK14235 phosphate transporter 99.8 8.2E-22 1.8E-26 171.3 5.0 96 40-169 156-252 (267)
223 TIGR01277 thiQ thiamine ABC tr 99.8 4.3E-22 9.4E-27 167.0 3.2 93 37-162 118-212 (213)
224 PRK09580 sufC cysteine desulfu 99.8 1.1E-21 2.3E-26 167.5 5.5 87 47-166 145-233 (248)
225 COG4172 ABC-type uncharacteriz 99.8 1.4E-21 2.9E-26 179.0 6.3 103 41-176 151-256 (534)
226 TIGR03269 met_CoM_red_A2 methy 99.8 8.3E-22 1.8E-26 185.4 5.1 101 36-169 157-259 (520)
227 PRK14258 phosphate ABC transpo 99.8 9.9E-22 2.1E-26 170.0 5.1 97 40-169 143-246 (261)
228 PRK14238 phosphate transporter 99.8 9.1E-22 2E-26 171.5 4.9 97 39-169 159-256 (271)
229 PRK10522 multidrug transporter 99.8 9E-22 1.9E-26 186.4 5.2 102 27-160 426-530 (547)
230 cd03292 ABC_FtsE_transporter F 99.8 6.5E-22 1.4E-26 165.2 3.7 89 36-157 125-214 (214)
231 PRK15134 microcin C ABC transp 99.8 8.3E-22 1.8E-26 185.9 4.9 97 40-169 418-516 (529)
232 PRK11247 ssuB aliphatic sulfon 99.8 7E-22 1.5E-26 171.6 4.0 96 36-164 122-219 (257)
233 PRK13547 hmuV hemin importer A 99.8 9.8E-22 2.1E-26 172.0 4.9 100 36-168 134-244 (272)
234 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.8 9E-22 1.9E-26 167.0 4.4 93 36-161 131-224 (224)
235 PRK14255 phosphate ABC transpo 99.8 1.1E-21 2.4E-26 168.2 4.9 97 40-170 141-238 (252)
236 PRK14256 phosphate ABC transpo 99.8 1.3E-21 2.7E-26 168.1 5.3 95 41-169 142-237 (252)
237 PRK10261 glutathione transport 99.8 7.2E-22 1.6E-26 190.3 4.1 97 40-169 161-259 (623)
238 PRK14261 phosphate ABC transpo 99.8 1.2E-21 2.6E-26 168.2 5.1 97 39-169 141-238 (253)
239 PRK14236 phosphate transporter 99.8 1.2E-21 2.6E-26 170.6 4.9 97 39-169 160-257 (272)
240 TIGR03740 galliderm_ABC gallid 99.8 8.6E-22 1.9E-26 166.1 3.9 97 36-165 113-210 (223)
241 cd03299 ABC_ModC_like Archeal 99.8 1.4E-21 3.1E-26 166.5 5.2 101 36-169 118-220 (235)
242 cd03300 ABC_PotA_N PotA is an 99.8 1.4E-21 3E-26 166.1 5.1 101 36-169 119-221 (232)
243 TIGR02673 FtsE cell division A 99.8 9.2E-22 2E-26 164.5 3.8 84 40-156 130-214 (214)
244 PRK14262 phosphate ABC transpo 99.8 1.6E-21 3.6E-26 167.0 5.3 96 40-169 139-235 (250)
245 PRK09700 D-allose transporter 99.8 1.1E-21 2.3E-26 184.3 4.5 99 37-168 135-234 (510)
246 PRK14243 phosphate transporter 99.8 1.8E-21 3.8E-26 168.9 5.5 95 41-169 145-249 (264)
247 PRK14241 phosphate transporter 99.8 1.5E-21 3.2E-26 168.3 5.0 96 40-169 141-243 (258)
248 PRK14259 phosphate ABC transpo 99.8 1.6E-21 3.4E-26 169.8 5.1 99 38-170 145-255 (269)
249 PRK15056 manganese/iron transp 99.8 1.3E-21 2.9E-26 170.3 4.6 99 36-168 131-230 (272)
250 PRK13549 xylose transporter AT 99.8 1.2E-21 2.6E-26 184.0 4.6 94 40-166 398-492 (506)
251 cd03262 ABC_HisP_GlnQ_permease 99.8 1.1E-21 2.5E-26 163.6 3.9 89 36-157 124-213 (213)
252 cd03369 ABCC_NFT1 Domain 2 of 99.8 1.9E-21 4E-26 162.3 5.1 89 41-163 119-207 (207)
253 PRK14271 phosphate ABC transpo 99.8 1.9E-21 4.2E-26 170.1 5.3 97 39-169 155-252 (276)
254 PRK10908 cell division protein 99.8 1.3E-21 2.9E-26 164.8 4.1 88 39-159 129-217 (222)
255 PRK13549 xylose transporter AT 99.8 1.2E-21 2.5E-26 184.0 4.1 98 37-167 133-231 (506)
256 cd03247 ABCC_cytochrome_bd The 99.8 2.1E-21 4.5E-26 158.9 5.1 83 45-161 96-178 (178)
257 cd03270 ABC_UvrA_I The excisio 99.8 2E-21 4.3E-26 165.5 5.1 88 41-161 131-226 (226)
258 PRK15439 autoinducer 2 ABC tra 99.8 1.6E-21 3.4E-26 183.6 4.9 99 37-168 130-229 (510)
259 PRK14275 phosphate ABC transpo 99.8 2E-21 4.4E-26 170.7 5.2 96 40-169 175-271 (286)
260 PRK15439 autoinducer 2 ABC tra 99.8 1.7E-21 3.7E-26 183.4 5.0 96 40-168 396-492 (510)
261 PRK10982 galactose/methyl gala 99.8 1.7E-21 3.6E-26 182.2 4.7 99 36-167 123-222 (491)
262 PRK14237 phosphate transporter 99.8 2.4E-21 5.1E-26 168.4 5.1 97 39-169 155-252 (267)
263 PRK14265 phosphate ABC transpo 99.8 2.8E-21 6.2E-26 168.7 5.6 96 40-169 154-259 (274)
264 cd03217 ABC_FeS_Assembly ABC-t 99.8 2.8E-21 6.1E-26 161.1 5.0 88 46-167 103-192 (200)
265 cd03234 ABCG_White The White s 99.8 2.5E-21 5.3E-26 163.8 4.6 91 38-161 134-226 (226)
266 cd03246 ABCC_Protease_Secretio 99.8 2.4E-21 5.2E-26 158.0 4.3 77 48-157 97-173 (173)
267 TIGR03269 met_CoM_red_A2 methy 99.8 2E-21 4.4E-26 182.8 4.4 96 40-168 420-517 (520)
268 PRK10762 D-ribose transporter 99.8 1.9E-21 4E-26 182.4 4.1 96 39-167 133-229 (501)
269 PRK11248 tauB taurine transpor 99.8 2E-21 4.4E-26 168.0 3.8 96 36-164 117-216 (255)
270 PRK14260 phosphate ABC transpo 99.8 4E-21 8.6E-26 165.9 5.5 96 40-169 143-244 (259)
271 PRK14263 phosphate ABC transpo 99.8 4.2E-21 9.1E-26 166.6 5.6 95 41-169 143-246 (261)
272 TIGR00968 3a0106s01 sulfate AB 99.8 3.1E-21 6.8E-26 164.6 4.7 97 39-168 122-220 (237)
273 PRK14252 phosphate ABC transpo 99.8 3.4E-21 7.4E-26 166.8 4.7 97 39-169 153-250 (265)
274 PRK14266 phosphate ABC transpo 99.8 4.6E-21 9.9E-26 164.2 5.4 95 41-169 140-235 (250)
275 PRK14264 phosphate ABC transpo 99.8 3.6E-21 7.8E-26 170.7 4.8 99 37-169 190-290 (305)
276 PRK11288 araG L-arabinose tran 99.8 3E-21 6.4E-26 181.1 4.5 95 40-167 389-484 (501)
277 PRK13545 tagH teichoic acids e 99.8 3.2E-21 6.9E-26 182.7 4.4 106 37-175 133-239 (549)
278 cd03267 ABC_NatA_like Similar 99.8 3.6E-21 7.8E-26 164.3 4.2 92 37-161 143-236 (236)
279 PRK14254 phosphate ABC transpo 99.8 5.4E-21 1.2E-25 168.1 5.4 96 40-169 173-270 (285)
280 cd03216 ABC_Carb_Monos_I This 99.8 4.7E-21 1E-25 155.4 4.6 80 47-159 82-162 (163)
281 COG4148 ModC ABC-type molybdat 99.8 4.6E-21 9.9E-26 168.8 4.6 102 36-170 117-220 (352)
282 PRK10762 D-ribose transporter 99.8 3.7E-21 8E-26 180.4 4.4 94 40-166 388-482 (501)
283 cd03232 ABC_PDR_domain2 The pl 99.8 5.5E-21 1.2E-25 158.5 4.5 82 47-161 108-192 (192)
284 PRK09544 znuC high-affinity zi 99.8 5.1E-21 1.1E-25 165.5 4.3 108 37-179 110-219 (251)
285 PRK09700 D-allose transporter 99.8 5.9E-21 1.3E-25 179.3 4.9 91 40-163 402-493 (510)
286 PRK10247 putative ABC transpor 99.8 4.4E-21 9.5E-26 162.5 3.6 93 39-164 129-223 (225)
287 TIGR00955 3a01204 The Eye Pigm 99.8 1.3E-20 2.8E-25 181.4 6.6 102 34-168 151-256 (617)
288 PRK14246 phosphate ABC transpo 99.8 1.1E-20 2.4E-25 163.6 5.5 96 41-170 147-243 (257)
289 TIGR02633 xylG D-xylose ABC tr 99.8 5.8E-21 1.2E-25 178.8 4.0 91 43-166 137-228 (500)
290 cd03213 ABCG_EPDR ABCG transpo 99.8 8.4E-21 1.8E-25 157.8 4.5 82 47-161 111-194 (194)
291 PLN03211 ABC transporter G-25; 99.8 1.5E-20 3.3E-25 182.5 6.6 100 36-168 194-296 (659)
292 cd03215 ABC_Carb_Monos_II This 99.8 8.7E-21 1.9E-25 155.9 4.1 77 48-157 105-182 (182)
293 PRK10982 galactose/methyl gala 99.8 9.1E-21 2E-25 177.2 4.6 91 41-164 385-476 (491)
294 COG0411 LivG ABC-type branched 99.8 1.5E-20 3.2E-25 162.3 5.5 103 36-171 138-242 (250)
295 COG4181 Predicted ABC-type tra 99.8 4.7E-21 1E-25 159.1 2.1 92 37-160 136-227 (228)
296 TIGR02633 xylG D-xylose ABC tr 99.8 1.1E-20 2.3E-25 177.0 4.3 92 41-165 397-489 (500)
297 cd03230 ABC_DR_subfamily_A Thi 99.8 1.2E-20 2.5E-25 154.0 4.0 77 48-157 96-173 (173)
298 PRK11288 araG L-arabinose tran 99.8 1.3E-20 2.8E-25 176.8 4.8 90 40-162 133-223 (501)
299 cd03271 ABC_UvrA_II The excisi 99.8 1.6E-20 3.4E-25 164.3 4.5 95 36-163 157-261 (261)
300 cd03238 ABC_UvrA The excision 99.8 2.1E-20 4.6E-25 154.6 4.8 88 41-161 81-170 (176)
301 TIGR02982 heterocyst_DevA ABC 99.8 1.6E-20 3.4E-25 158.3 3.8 89 36-157 130-219 (220)
302 COG0410 LivF ABC-type branched 99.8 2.1E-20 4.6E-25 160.2 4.6 109 28-170 118-228 (237)
303 cd03237 ABC_RNaseL_inhibitor_d 99.8 2.6E-20 5.5E-25 160.9 4.5 99 36-167 104-206 (246)
304 TIGR00954 3a01203 Peroxysomal 99.8 1.1E-20 2.5E-25 183.2 2.4 101 15-153 552-652 (659)
305 PRK15177 Vi polysaccharide exp 99.8 2E-20 4.3E-25 157.9 3.1 95 41-169 98-193 (213)
306 COG4559 ABC-type hemin transpo 99.8 2.9E-20 6.2E-25 158.5 3.7 103 43-179 131-240 (259)
307 cd03229 ABC_Class3 This class 99.8 3.9E-20 8.4E-25 151.5 4.1 76 48-156 101-178 (178)
308 COG1137 YhbG ABC-type (unclass 99.8 7.4E-20 1.6E-24 154.8 5.2 102 37-171 129-231 (243)
309 cd03228 ABCC_MRP_Like The MRP 99.8 6.3E-20 1.4E-24 149.4 4.3 75 48-156 97-171 (171)
310 PRK15064 ABC transporter ATP-b 99.8 7.3E-20 1.6E-24 172.8 5.3 94 40-169 431-526 (530)
311 TIGR03608 L_ocin_972_ABC putat 99.8 5.3E-20 1.1E-24 152.8 3.4 83 37-152 124-206 (206)
312 cd03223 ABCD_peroxisomal_ALDP 99.8 1.1E-19 2.4E-24 147.8 4.7 77 44-156 88-164 (166)
313 cd03233 ABC_PDR_domain1 The pl 99.8 1.2E-19 2.6E-24 151.7 4.9 88 41-161 112-202 (202)
314 PRK15064 ABC transporter ATP-b 99.8 1.1E-19 2.5E-24 171.5 5.3 90 43-168 151-242 (530)
315 PRK10938 putative molybdenum t 99.8 1E-19 2.2E-24 170.0 4.5 88 40-160 394-484 (490)
316 COG4152 ABC-type uncharacteriz 99.8 9.3E-20 2E-24 158.1 3.9 97 42-171 125-222 (300)
317 TIGR01257 rim_protein retinal- 99.8 1.4E-19 3E-24 191.8 4.9 103 36-171 2059-2162(2272)
318 TIGR01257 rim_protein retinal- 99.8 1.8E-19 3.9E-24 191.0 5.4 102 36-171 1050-1152(2272)
319 cd03236 ABC_RNaseL_inhibitor_d 99.8 1.9E-19 4.1E-24 156.4 4.1 92 36-161 128-220 (255)
320 PRK13538 cytochrome c biogenes 99.8 2.1E-19 4.5E-24 150.0 3.6 83 37-152 119-202 (204)
321 PRK11819 putative ABC transpor 99.8 3.4E-19 7.4E-24 169.5 5.5 92 41-168 157-250 (556)
322 PRK10535 macrolide transporter 99.8 2.1E-19 4.6E-24 174.0 4.0 99 36-167 133-231 (648)
323 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.8 3.7E-19 8E-24 141.9 4.4 73 48-156 71-144 (144)
324 TIGR03719 ABC_ABC_ChvD ATP-bin 99.8 4.1E-19 8.8E-24 168.7 5.4 91 42-168 156-248 (552)
325 cd03222 ABC_RNaseL_inhibitor T 99.8 3.1E-19 6.8E-24 147.8 4.0 84 48-164 72-159 (177)
326 PRK13543 cytochrome c biogenes 99.8 4.1E-19 8.8E-24 149.4 4.4 84 38-154 128-212 (214)
327 PRK10636 putative ABC transpor 99.8 4.6E-19 9.9E-24 171.4 5.0 91 41-167 424-516 (638)
328 PRK13409 putative ATPase RIL; 99.8 3.9E-19 8.5E-24 170.8 3.9 93 36-162 442-536 (590)
329 TIGR00630 uvra excinuclease AB 99.7 6.7E-19 1.5E-23 176.0 5.3 101 36-169 475-584 (924)
330 PRK11147 ABC transporter ATPas 99.7 9.1E-19 2E-23 169.1 5.5 91 42-168 151-243 (635)
331 PRK00349 uvrA excinuclease ABC 99.7 7.5E-19 1.6E-23 176.0 5.0 101 36-169 477-586 (943)
332 COG4604 CeuD ABC-type enteroch 99.7 5.4E-19 1.2E-23 149.5 2.6 98 39-169 127-226 (252)
333 PRK10636 putative ABC transpor 99.7 1.2E-18 2.5E-23 168.6 5.2 92 40-167 142-235 (638)
334 TIGR00956 3a01205 Pleiotropic 99.7 1.1E-18 2.4E-23 181.0 5.3 96 36-164 890-989 (1394)
335 TIGR01166 cbiO cobalt transpor 99.7 6.8E-19 1.5E-23 145.0 3.1 74 36-142 116-189 (190)
336 COG4525 TauB ABC-type taurine 99.7 2.3E-19 5E-24 151.6 0.2 91 42-164 127-220 (259)
337 TIGR02324 CP_lyasePhnL phospho 99.7 9.1E-19 2E-23 147.5 3.7 78 42-152 144-222 (224)
338 PRK13539 cytochrome c biogenes 99.7 1.4E-18 2.9E-23 145.5 3.5 80 41-154 121-200 (207)
339 PLN03073 ABC transporter F fam 99.7 2.1E-18 4.6E-23 169.0 5.4 91 41-167 621-713 (718)
340 cd03231 ABC_CcmA_heme_exporter 99.7 1.8E-18 4E-23 144.2 3.6 79 41-152 119-198 (201)
341 TIGR03719 ABC_ABC_ChvD ATP-bin 99.7 3E-18 6.4E-23 162.8 5.1 92 41-168 437-531 (552)
342 TIGR00956 3a01205 Pleiotropic 99.7 5.2E-18 1.1E-22 176.0 7.1 100 36-168 197-300 (1394)
343 PRK00349 uvrA excinuclease ABC 99.7 3.6E-18 7.8E-23 171.1 5.6 105 36-173 818-932 (943)
344 cd00267 ABC_ATPase ABC (ATP-bi 99.7 3.2E-18 7E-23 137.0 4.2 76 48-156 81-157 (157)
345 PRK11819 putative ABC transpor 99.7 3.5E-18 7.6E-23 162.6 5.2 93 41-169 439-534 (556)
346 PRK13540 cytochrome c biogenes 99.7 2.6E-18 5.5E-23 143.0 3.1 79 40-151 120-198 (200)
347 COG1129 MglA ABC-type sugar tr 99.7 3.4E-18 7.4E-23 160.7 3.6 89 41-162 139-228 (500)
348 PRK13541 cytochrome c biogenes 99.7 3.6E-18 7.9E-23 141.6 3.3 81 37-150 113-193 (195)
349 cd03279 ABC_sbcCD SbcCD and ot 99.7 5.6E-18 1.2E-22 142.7 4.5 88 37-157 113-211 (213)
350 PLN03140 ABC transporter G fam 99.7 4.6E-18 9.9E-23 176.9 4.5 94 38-164 1009-1106(1470)
351 PLN03073 ABC transporter F fam 99.7 8E-18 1.7E-22 164.9 5.2 90 42-167 339-430 (718)
352 PRK11147 ABC transporter ATPas 99.7 8.8E-18 1.9E-22 162.3 5.1 91 41-167 434-527 (635)
353 PRK13409 putative ATPase RIL; 99.7 6.4E-18 1.4E-22 162.4 4.1 86 36-155 201-287 (590)
354 COG1119 ModF ABC-type molybden 99.7 1.3E-17 2.8E-22 144.3 5.4 94 36-162 160-256 (257)
355 TIGR01189 ccmA heme ABC export 99.7 6.7E-18 1.5E-22 140.1 3.5 80 38-151 118-197 (198)
356 COG4586 ABC-type uncharacteriz 99.7 1E-17 2.2E-22 147.2 4.5 108 36-176 145-254 (325)
357 TIGR00630 uvra excinuclease AB 99.7 1.7E-17 3.8E-22 166.0 5.2 98 36-166 816-923 (924)
358 COG4107 PhnK ABC-type phosphon 99.7 1.8E-17 3.8E-22 138.5 3.9 107 39-177 143-251 (258)
359 PRK00635 excinuclease ABC subu 99.7 2.3E-17 4.9E-22 172.7 5.3 100 36-168 797-906 (1809)
360 PLN03140 ABC transporter G fam 99.7 2.8E-17 6E-22 171.1 5.7 101 35-168 323-427 (1470)
361 PRK00635 excinuclease ABC subu 99.7 3E-17 6.6E-22 171.7 5.1 100 36-168 464-572 (1809)
362 KOG0061|consensus 99.7 3.8E-17 8.3E-22 157.7 4.8 99 37-168 159-260 (613)
363 COG0488 Uup ATPase components 99.7 5.6E-17 1.2E-21 154.2 4.7 91 42-168 148-240 (530)
364 COG1101 PhnK ABC-type uncharac 99.7 5.9E-17 1.3E-21 138.5 4.3 102 28-161 129-231 (263)
365 COG1129 MglA ABC-type sugar tr 99.6 1.1E-16 2.3E-21 150.6 5.0 89 43-164 397-486 (500)
366 cd03278 ABC_SMC_barmotin Barmo 99.6 1.1E-16 2.3E-21 134.1 4.0 80 41-154 107-190 (197)
367 COG4619 ABC-type uncharacteriz 99.6 1.4E-16 3.1E-21 132.1 4.3 89 38-158 124-213 (223)
368 cd03272 ABC_SMC3_euk Eukaryoti 99.6 1.8E-16 3.9E-21 134.9 4.6 79 41-153 152-234 (243)
369 cd03240 ABC_Rad50 The catalyti 99.6 2.7E-16 5.8E-21 132.3 5.2 82 40-154 108-197 (204)
370 COG3845 ABC-type uncharacteriz 99.6 2.8E-16 6.1E-21 146.5 5.5 94 36-162 129-223 (501)
371 cd03275 ABC_SMC1_euk Eukaryoti 99.6 2E-16 4.3E-21 136.2 4.0 77 45-154 153-233 (247)
372 cd03276 ABC_SMC6_euk Eukaryoti 99.6 2.8E-16 6.1E-21 131.7 4.8 83 41-156 103-192 (198)
373 cd03239 ABC_SMC_head The struc 99.6 3.4E-16 7.4E-21 129.4 4.5 87 29-154 82-172 (178)
374 COG4674 Uncharacterized ABC-ty 99.6 5E-16 1.1E-20 131.4 3.7 100 39-172 139-239 (249)
375 cd03273 ABC_SMC2_euk Eukaryoti 99.6 7.3E-16 1.6E-20 132.7 4.6 79 41-153 160-242 (251)
376 KOG0059|consensus 99.6 9.4E-16 2E-20 153.4 4.7 99 42-173 693-792 (885)
377 COG4167 SapF ABC-type antimicr 99.6 2.4E-15 5.1E-20 126.6 5.1 95 44-170 146-241 (267)
378 cd03274 ABC_SMC4_euk Eukaryoti 99.6 2.8E-15 6.2E-20 126.9 5.3 77 44-154 124-204 (212)
379 COG1134 TagH ABC-type polysacc 99.5 1.6E-15 3.6E-20 131.1 1.5 95 43-170 143-238 (249)
380 cd03277 ABC_SMC5_euk Eukaryoti 99.5 1.1E-14 2.4E-19 123.5 5.5 93 30-156 110-211 (213)
381 COG0488 Uup ATPase components 99.5 8.8E-15 1.9E-19 139.2 5.2 91 42-169 434-526 (530)
382 PHA02562 46 endonuclease subun 99.5 6.5E-15 1.4E-19 139.2 4.2 91 32-157 447-555 (562)
383 COG0396 sufC Cysteine desulfur 99.5 2.6E-14 5.7E-19 123.0 6.1 88 47-168 144-233 (251)
384 COG0178 UvrA Excinuclease ATPa 99.5 5.1E-14 1.1E-18 137.7 6.6 101 41-174 816-925 (935)
385 COG4136 ABC-type uncharacteriz 99.5 2.6E-14 5.5E-19 117.1 3.7 90 20-152 118-207 (213)
386 cd03241 ABC_RecN RecN ATPase i 99.5 3.4E-14 7.4E-19 124.4 4.6 78 46-157 169-250 (276)
387 KOG0062|consensus 99.5 2E-14 4.4E-19 134.8 2.8 105 13-163 458-564 (582)
388 cd03227 ABC_Class2 ABC-type Cl 99.4 7.8E-14 1.7E-18 112.9 4.1 75 47-154 77-155 (162)
389 KOG0927|consensus 99.4 7.5E-14 1.6E-18 131.7 4.4 93 41-169 215-310 (614)
390 TIGR00634 recN DNA repair prot 99.4 1.1E-13 2.4E-18 132.3 4.4 77 46-156 439-519 (563)
391 COG4778 PhnL ABC-type phosphon 99.4 1.9E-13 4.2E-18 113.9 3.2 77 44-153 149-226 (235)
392 TIGR00606 rad50 rad50. This fa 99.4 3.1E-13 6.7E-18 140.0 4.6 96 19-145 1173-1275(1311)
393 KOG0062|consensus 99.4 1E-13 2.2E-18 130.2 1.0 89 45-169 196-286 (582)
394 cd03280 ABC_MutS2 MutS2 homolo 99.4 1.2E-13 2.6E-18 115.3 1.2 88 40-160 84-171 (200)
395 COG4178 ABC-type uncharacteriz 99.4 1.6E-13 3.5E-18 131.6 1.0 102 12-152 485-586 (604)
396 KOG0065|consensus 99.3 7.1E-14 1.5E-18 142.1 -2.1 96 37-165 919-1018(1391)
397 PRK10869 recombination and rep 99.3 7.8E-13 1.7E-17 126.6 4.5 76 47-156 430-509 (553)
398 COG4138 BtuD ABC-type cobalami 99.3 1.3E-13 2.8E-18 115.4 -1.2 101 36-169 114-222 (248)
399 KOG0927|consensus 99.3 2.2E-13 4.8E-18 128.5 0.3 105 17-167 489-595 (614)
400 COG1245 Predicted ATPase, RNas 99.3 1.1E-12 2.3E-17 122.3 4.5 87 34-153 442-530 (591)
401 TIGR00618 sbcc exonuclease Sbc 99.3 1.1E-12 2.5E-17 133.1 4.8 80 43-155 946-1036(1042)
402 COG1245 Predicted ATPase, RNas 99.3 1.3E-12 2.9E-17 121.7 3.8 85 36-153 202-287 (591)
403 COG3845 ABC-type uncharacteriz 99.3 1.5E-12 3.3E-17 121.7 3.8 89 44-165 400-489 (501)
404 PRK03918 chromosome segregatio 99.3 1.6E-12 3.5E-17 128.9 4.2 78 44-154 785-868 (880)
405 COG4170 SapD ABC-type antimicr 99.3 1.9E-12 4.1E-17 111.3 3.7 93 46-170 157-250 (330)
406 COG0178 UvrA Excinuclease ATPa 99.3 4.1E-12 8.9E-17 124.6 6.0 111 29-173 464-582 (935)
407 COG4133 CcmA ABC-type transpor 99.2 1.1E-11 2.5E-16 104.1 4.5 87 14-144 108-194 (209)
408 PRK01156 chromosome segregatio 99.2 8.3E-12 1.8E-16 124.7 4.3 78 44-153 798-883 (895)
409 TIGR02168 SMC_prok_B chromosom 99.2 9.5E-12 2.1E-16 125.0 3.7 77 43-153 1085-1165(1179)
410 PF00005 ABC_tran: ABC transpo 99.2 8.3E-12 1.8E-16 96.8 1.6 40 37-76 98-137 (137)
411 cd03242 ABC_RecF RecF is a rec 99.1 4.4E-11 9.6E-16 104.4 4.7 75 46-157 182-269 (270)
412 PRK10246 exonuclease subunit S 99.1 3.7E-11 8.1E-16 122.4 4.5 79 43-154 945-1032(1047)
413 KOG0066|consensus 99.1 7.8E-11 1.7E-15 110.0 5.9 88 44-167 701-790 (807)
414 cd03285 ABC_MSH2_euk MutS2 hom 99.1 7E-11 1.5E-15 100.9 3.0 84 45-162 87-175 (222)
415 TIGR02169 SMC_prok_A chromosom 99.1 1.3E-10 2.9E-15 117.2 4.9 77 44-154 1071-1151(1164)
416 KOG0060|consensus 99.0 4.6E-11 9.9E-16 113.8 1.3 106 12-154 535-641 (659)
417 PRK02224 chromosome segregatio 99.0 1.6E-10 3.4E-15 115.1 4.5 78 45-155 779-869 (880)
418 cd03243 ABC_MutS_homologs The 99.0 9.7E-11 2.1E-15 97.8 1.4 92 42-166 86-177 (202)
419 cd01128 rho_factor Transcripti 99.0 1E-10 2.2E-15 101.9 0.8 94 27-157 109-211 (249)
420 KOG0066|consensus 99.0 6.3E-11 1.4E-15 110.6 -1.0 85 46-166 411-497 (807)
421 PRK00064 recF recombination pr 98.9 8.4E-10 1.8E-14 100.5 4.7 76 46-157 272-359 (361)
422 COG4615 PvdE ABC-type sideroph 98.9 5.3E-10 1.1E-14 103.2 1.4 84 46-161 447-530 (546)
423 KOG0065|consensus 98.8 1.9E-09 4E-14 110.5 3.2 106 30-168 242-351 (1391)
424 KOG2355|consensus 98.8 6.6E-09 1.4E-13 89.2 4.9 90 45-167 145-236 (291)
425 smart00534 MUTSac ATPase domai 98.8 1.9E-09 4.1E-14 89.1 1.4 82 41-157 55-139 (185)
426 TIGR00611 recf recF protein. A 98.7 1.6E-08 3.4E-13 92.5 4.0 43 46-88 274-325 (365)
427 PRK14079 recF recombination pr 98.6 3.3E-08 7.2E-13 89.8 4.7 77 47-162 263-348 (349)
428 cd03284 ABC_MutS1 MutS1 homolo 98.6 3.1E-08 6.7E-13 84.2 3.0 86 46-166 84-179 (216)
429 PF02463 SMC_N: RecF/RecN/SMC 98.6 4.6E-08 1E-12 82.0 3.5 72 47-152 136-211 (220)
430 COG0419 SbcC ATPase involved i 98.6 6E-08 1.3E-12 97.7 4.8 80 43-155 811-898 (908)
431 KOG0064|consensus 98.5 4.6E-08 1E-12 93.1 1.9 102 13-152 580-681 (728)
432 cd03282 ABC_MSH4_euk MutS4 hom 98.4 8.2E-08 1.8E-12 81.1 2.2 72 41-145 85-156 (204)
433 KOG0063|consensus 98.4 5.2E-08 1.1E-12 90.9 0.8 88 34-154 443-532 (592)
434 TIGR02680 conserved hypothetic 98.4 1.1E-07 2.5E-12 99.4 3.1 47 42-88 1242-1300(1353)
435 KOG0063|consensus 98.4 1.6E-07 3.4E-12 87.8 3.4 81 40-153 206-287 (592)
436 cd01124 KaiC KaiC is a circadi 98.4 6.5E-07 1.4E-11 72.5 6.6 86 36-154 60-164 (187)
437 PRK00409 recombination and DNA 98.4 9E-08 2E-12 95.3 0.8 85 40-158 383-468 (782)
438 COG2401 ABC-type ATPase fused 98.3 6E-07 1.3E-11 83.8 3.9 85 42-158 502-588 (593)
439 PF13304 AAA_21: AAA domain; P 98.2 1.1E-06 2.3E-11 71.0 3.7 66 45-143 234-302 (303)
440 cd03283 ABC_MutS-like MutS-lik 98.2 9.9E-07 2.2E-11 74.1 2.8 68 53-152 91-163 (199)
441 PRK13695 putative NTPase; Prov 98.2 6.3E-07 1.4E-11 72.9 1.5 82 42-160 73-156 (174)
442 cd03281 ABC_MSH5_euk MutS5 hom 98.1 1.6E-06 3.4E-11 73.6 3.0 62 52-145 95-159 (213)
443 PTZ00132 GTP-binding nuclear p 97.9 5.3E-06 1.1E-10 69.3 2.8 44 47-90 150-200 (215)
444 PRK13830 conjugal transfer pro 97.9 9.2E-06 2E-10 81.4 4.4 69 63-164 650-729 (818)
445 TIGR01069 mutS2 MutS2 family p 97.9 4.2E-06 9E-11 83.4 1.4 69 41-142 379-447 (771)
446 TIGR02858 spore_III_AA stage I 97.9 1.7E-05 3.6E-10 70.1 4.9 37 129-167 218-268 (270)
447 PF13558 SbcCD_C: Putative exo 97.8 6.4E-06 1.4E-10 61.0 1.4 49 41-89 26-87 (90)
448 COG1196 Smc Chromosome segrega 97.5 6.9E-05 1.5E-09 77.7 3.3 73 44-150 1063-1139(1163)
449 PRK06067 flagellar accessory p 97.2 0.00055 1.2E-08 58.1 5.2 37 47-83 100-138 (234)
450 PF09818 ABC_ATPase: Predicted 97.2 0.00079 1.7E-08 63.2 6.1 120 20-158 296-417 (448)
451 TIGR03185 DNA_S_dndD DNA sulfu 97.1 0.00043 9.2E-09 67.8 3.8 44 45-89 549-598 (650)
452 cd03286 ABC_MSH6_euk MutS6 hom 97.0 0.00039 8.4E-09 59.5 2.1 60 54-145 98-158 (218)
453 KOG0964|consensus 96.9 0.00031 6.7E-09 70.8 1.2 78 46-157 1096-1178(1200)
454 PRK08533 flagellar accessory p 96.8 0.0025 5.5E-08 54.6 5.8 32 47-78 95-130 (230)
455 cd03287 ABC_MSH3_euk MutS3 hom 96.8 0.0011 2.4E-08 56.8 3.2 59 54-144 99-158 (222)
456 KOG0933|consensus 96.7 0.0011 2.4E-08 67.1 3.1 44 45-88 1080-1127(1174)
457 PRK13891 conjugal transfer pro 96.7 0.0012 2.6E-08 66.7 3.1 55 58-145 680-735 (852)
458 PF13175 AAA_15: AAA ATPase do 96.5 0.0027 5.9E-08 57.1 3.7 46 45-90 339-394 (415)
459 PF13166 AAA_13: AAA domain 96.3 0.0032 6.9E-08 61.7 3.6 67 45-144 498-575 (712)
460 cd01120 RecA-like_NTPases RecA 96.3 0.0081 1.8E-07 46.3 5.0 33 49-81 69-101 (165)
461 COG3910 Predicted ATPase [Gene 95.9 0.012 2.6E-07 50.3 4.4 78 47-158 129-207 (233)
462 TIGR02655 circ_KaiC circadian 95.8 0.0025 5.5E-08 60.4 0.0 72 39-153 107-190 (484)
463 cd01125 repA Hexameric Replica 95.7 0.0078 1.7E-07 51.4 2.7 29 49-78 79-123 (239)
464 COG4637 Predicted ATPase [Gene 95.7 0.014 3E-07 53.3 4.2 74 46-153 269-346 (373)
465 cd01131 PilT Pilus retraction 95.3 0.0071 1.5E-07 50.5 1.2 57 57-153 66-122 (198)
466 TIGR02788 VirB11 P-type DNA tr 95.3 0.007 1.5E-07 54.0 1.1 72 55-167 208-280 (308)
467 COG3044 Predicted ATPase of th 95.1 0.051 1.1E-06 51.3 6.2 109 26-158 300-412 (554)
468 PRK13873 conjugal transfer ATP 95.0 0.016 3.5E-07 58.2 3.0 61 62-155 632-703 (811)
469 KOG0962|consensus 95.0 0.017 3.8E-07 60.3 2.9 79 47-153 1183-1273(1294)
470 KOG0996|consensus 94.8 0.02 4.4E-07 59.1 3.0 76 44-153 1192-1271(1293)
471 COG0497 RecN ATPase involved i 94.8 0.034 7.4E-07 53.9 4.2 75 46-154 430-508 (557)
472 TIGR00152 dephospho-CoA kinase 94.6 0.027 5.8E-07 46.2 2.6 72 50-156 60-134 (188)
473 COG1195 RecF Recombinational D 94.0 0.072 1.6E-06 49.2 4.4 42 47-88 275-325 (363)
474 PRK13898 type IV secretion sys 93.5 0.058 1.2E-06 54.2 3.1 49 61-142 638-687 (800)
475 PRK06793 fliI flagellum-specif 93.4 0.05 1.1E-06 51.3 2.3 39 43-81 217-262 (432)
476 PRK05399 DNA mismatch repair p 92.6 0.094 2E-06 53.3 3.1 35 47-81 666-705 (854)
477 COG4694 Uncharacterized protei 92.2 0.21 4.5E-06 48.6 4.6 71 41-144 522-601 (758)
478 PRK07721 fliI flagellum-specif 91.2 0.2 4.3E-06 47.3 3.4 34 132-166 308-341 (438)
479 TIGR01420 pilT_fam pilus retra 90.6 0.087 1.9E-06 47.8 0.4 30 56-88 186-215 (343)
480 PRK08699 DNA polymerase III su 90.1 0.21 4.6E-06 45.2 2.5 42 69-144 116-157 (325)
481 KOG0018|consensus 89.7 0.33 7.2E-06 50.1 3.7 73 44-152 1048-1124(1141)
482 TIGR03880 KaiC_arch_3 KaiC dom 83.8 1.9 4.1E-05 36.1 4.6 32 122-153 136-177 (224)
483 PRK14088 dnaA chromosomal repl 83.7 0.43 9.3E-06 44.9 0.7 67 65-164 194-264 (440)
484 smart00382 AAA ATPases associa 80.5 2.1 4.5E-05 31.0 3.3 42 45-86 58-99 (148)
485 PRK13764 ATPase; Provisional 79.9 2.5 5.4E-05 41.7 4.4 24 139-162 373-399 (602)
486 cd00561 CobA_CobO_BtuR ATP:cor 77.8 2.5 5.5E-05 34.6 3.3 65 56-154 84-154 (159)
487 PF00488 MutS_V: MutS domain V 76.6 3.3 7.2E-05 35.6 3.8 67 47-145 102-171 (235)
488 PRK04863 mukB cell division pr 75.7 1.8 3.8E-05 46.9 2.2 46 44-90 1362-1424(1486)
489 PF13514 AAA_27: AAA domain 75.7 2 4.4E-05 44.8 2.6 67 46-146 1024-1098(1111)
490 PRK07414 cob(I)yrinic acid a,c 75.3 3.7 8E-05 34.4 3.6 70 55-156 103-176 (178)
491 COG3593 Predicted ATP-dependen 75.2 3.4 7.4E-05 40.5 3.9 54 65-152 301-356 (581)
492 COG4913 Uncharacterized protei 75.1 4 8.6E-05 41.3 4.3 51 36-88 981-1044(1104)
493 PRK06893 DNA replication initi 74.1 2.6 5.7E-05 35.8 2.5 15 64-78 90-104 (229)
494 KOG0250|consensus 72.6 6.3 0.00014 41.1 5.1 92 33-155 975-1070(1074)
495 PRK04296 thymidine kinase; Pro 72.3 6.2 0.00013 32.5 4.3 28 127-154 103-141 (190)
496 PRK09302 circadian clock prote 71.9 3.9 8.3E-05 38.9 3.3 27 127-153 164-200 (509)
497 TIGR01070 mutS1 DNA mismatch r 70.4 3.6 7.8E-05 42.0 2.9 41 48-88 652-694 (840)
498 TIGR00708 cobA cob(I)alamin ad 64.0 8.2 0.00018 32.1 3.3 69 54-154 84-156 (173)
499 PRK00454 engB GTP-binding prot 62.9 5.2 0.00011 31.9 2.0 47 40-90 140-189 (196)
500 PRK05986 cob(I)alamin adenolsy 61.6 8.2 0.00018 32.6 3.0 68 55-154 103-174 (191)
No 1
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.98 E-value=7.3e-34 Score=269.87 Aligned_cols=138 Identities=28% Similarity=0.463 Sum_probs=125.1
Q ss_pred CCCCCCCCcceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhh
Q psy12535 10 PGHPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFED 89 (209)
Q Consensus 10 ~~~~~~~~~~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~ 89 (209)
+..+++++.++++.|++++++..+|.||+|.+|++|.+|||||||||+||||++++|+|||||||||+||+.+++.+.+.
T Consensus 448 ~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~ 527 (588)
T PRK11174 448 PDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQA 527 (588)
T ss_pred CCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHH
Confidence 45677888999999999999999999999999999999999999999999999999999999999999999999988774
Q ss_pred hhhccccCCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeeccceeecchhhHHhhc
Q psy12535 90 CITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLAS 169 (209)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~~~ 169 (209)
+. + ..+++|+|+|||+++.+..+|+|++|++|++++.|+++++.++
T Consensus 528 l~---------------------------------~-~~~~~TvIiItHrl~~i~~aD~Iivl~~G~i~e~G~~~eL~~~ 573 (588)
T PRK11174 528 LN---------------------------------A-ASRRQTTLMVTHQLEDLAQWDQIWVMQDGQIVQQGDYAELSQA 573 (588)
T ss_pred HH---------------------------------H-HhCCCEEEEEecChHHHHhCCEEEEEeCCeEeecCCHHHHHhc
Confidence 32 1 2358999999999999999999999999999999999999988
Q ss_pred cCCchhccCCCc
Q psy12535 170 GLDFTQLLDAPE 181 (209)
Q Consensus 170 ~~~~~~~~~~~~ 181 (209)
.+.|.+++..+.
T Consensus 574 ~~~y~~l~~~q~ 585 (588)
T PRK11174 574 GGLFATLLAHRQ 585 (588)
T ss_pred chHHHHHHHHhh
Confidence 888888875543
No 2
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.97 E-value=2.6e-33 Score=272.73 Aligned_cols=138 Identities=30% Similarity=0.549 Sum_probs=124.7
Q ss_pred CCCCCCCCCcceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhh
Q psy12535 9 GPGHPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFE 88 (209)
Q Consensus 9 ~~~~~~~~~~~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~ 88 (209)
.+..++|.+.++++.++++++|..+|.||+|.|||+|.+|||||||||+|||||+++|+|||||||||+||+.+++.+.+
T Consensus 571 ~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~ 650 (709)
T COG2274 571 NPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQ 650 (709)
T ss_pred CCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHH
Confidence 34455677778888889999999999999999999999999999999999999999999999999999999999999988
Q ss_pred hhhhccccCCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeeccceeecchhhHHhh
Q psy12535 89 DCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLA 168 (209)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~~ 168 (209)
.+.. ...++|+|+|||+++.++.||+|+||++|+|+++|+++++++
T Consensus 651 ~L~~----------------------------------~~~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~~gs~~ell~ 696 (709)
T COG2274 651 NLLQ----------------------------------ILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELLA 696 (709)
T ss_pred HHHH----------------------------------HhcCCeEEEEEccchHhhhccEEEEccCCceeccCCHHHHHH
Confidence 6432 235799999999999999999999999999999999999999
Q ss_pred ccCCchhccCCC
Q psy12535 169 SGLDFTQLLDAP 180 (209)
Q Consensus 169 ~~~~~~~~~~~~ 180 (209)
.++.|.+++..+
T Consensus 697 ~~g~y~~l~~~q 708 (709)
T COG2274 697 QGGLYARLYQQQ 708 (709)
T ss_pred hcChHHHHHhcc
Confidence 988888887543
No 3
>KOG0058|consensus
Probab=99.97 E-value=3.3e-33 Score=267.90 Aligned_cols=137 Identities=31% Similarity=0.518 Sum_probs=121.3
Q ss_pred CCCCCCCcceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhh
Q psy12535 11 GHPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDC 90 (209)
Q Consensus 11 ~~~~~~~~~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~ 90 (209)
..++++++.+++.|..++||..+|+||+|.|||+|.+|||||||||||||||+++|.||||||+|||||.+++..+-+.+
T Consensus 568 ~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL 647 (716)
T KOG0058|consen 568 NATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEAL 647 (716)
T ss_pred CCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHH
Confidence 45667888899999999999999999999999999999999999999999999999999999999999998776665532
Q ss_pred hhccccCCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeeccceeecchhhHHhhcc
Q psy12535 91 ITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASG 170 (209)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~~~~ 170 (209)
-. ..+++|||+|+|+++.++.+|+|+++++|+|++.|+++|++++.
T Consensus 648 ~~----------------------------------~~~~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E~G~h~eLl~~~ 693 (716)
T KOG0058|consen 648 DR----------------------------------LMQGRTVLVIAHRLSTVRHADQIVVIDKGRVVEMGTHDELLSKP 693 (716)
T ss_pred HH----------------------------------hhcCCeEEEEehhhhHhhhccEEEEEcCCeEEecccHHHHhhCc
Confidence 11 23579999999999999999999999999999999999999887
Q ss_pred -CCchhccCCCc
Q psy12535 171 -LDFTQLLDAPE 181 (209)
Q Consensus 171 -~~~~~~~~~~~ 181 (209)
+-|.++..++.
T Consensus 694 ~gly~~Lv~~q~ 705 (716)
T KOG0058|consen 694 NGLYAKLVQRQL 705 (716)
T ss_pred ccHHHHHHHHhc
Confidence 56777766554
No 4
>KOG0055|consensus
Probab=99.97 E-value=7.3e-33 Score=277.52 Aligned_cols=135 Identities=29% Similarity=0.479 Sum_probs=122.1
Q ss_pred CCCCCCcceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhh
Q psy12535 12 HPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCI 91 (209)
Q Consensus 12 ~~~~~~~~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~ 91 (209)
.+.+.+.++++.+..++||..+|+||||.||++|.+||||||||||||||+++||+||||||.|||||.++++.+-+.+
T Consensus 1091 vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeAL- 1169 (1228)
T KOG0055|consen 1091 VSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEAL- 1169 (1228)
T ss_pred CCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHH-
Confidence 5667788889999999999999999999999999999999999999999999999999999999999998877765532
Q ss_pred hccccCCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeeccceeecchhhHHhhccC
Q psy12535 92 TGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGL 171 (209)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~~~~~ 171 (209)
. + ...|+|.|+|+|+++.+.+||.|+|+++|+|+|+|+|++|++..+
T Consensus 1170 d--------------------------------~-a~~gRT~IvIAHRLSTIqnaD~I~Vi~~G~VvE~GtH~~L~~~~G 1216 (1228)
T KOG0055|consen 1170 D--------------------------------R-AMEGRTTIVIAHRLSTIQNADVIAVLKNGKVVEQGTHDELLAKRG 1216 (1228)
T ss_pred H--------------------------------H-hhcCCcEEEEecchhhhhcCCEEEEEECCEEEecccHHHHHhCCC
Confidence 1 1 246899999999999999999999999999999999999999888
Q ss_pred CchhccCCC
Q psy12535 172 DFTQLLDAP 180 (209)
Q Consensus 172 ~~~~~~~~~ 180 (209)
.|.++...+
T Consensus 1217 ~Y~~Lv~~q 1225 (1228)
T KOG0055|consen 1217 IYFRLVQLQ 1225 (1228)
T ss_pred chHHHhhhc
Confidence 888887654
No 5
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.97 E-value=9e-33 Score=261.85 Aligned_cols=136 Identities=32% Similarity=0.565 Sum_probs=123.8
Q ss_pred CCCCCCcceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhh
Q psy12535 12 HPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCI 91 (209)
Q Consensus 12 ~~~~~~~~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~ 91 (209)
++++.+.++++.+++++++..+|+||+|.+|++|..||||||||++||||++++|+|||||||||+||+.++..+.+.+.
T Consensus 430 at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~ 509 (567)
T COG1132 430 ATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALK 509 (567)
T ss_pred CCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHH
Confidence 56678889999999999999999999999999999999999999999999999999999999999999999988877542
Q ss_pred hccccCCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeeccceeecchhhHHhhccC
Q psy12535 92 TGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGL 171 (209)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~~~~~ 171 (209)
. ..+++|+|+|+|+++.+..||+|++|++|+|++.|+|++|+++.+
T Consensus 510 ---------------------------------~-l~~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~h~eLl~~~g 555 (567)
T COG1132 510 ---------------------------------K-LLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHEELLAKGG 555 (567)
T ss_pred ---------------------------------H-HhcCCEEEEEeccHhHHHhCCEEEEEECCEEEEecCHHHHHHcCC
Confidence 1 125689999999999999999999999999999999999999988
Q ss_pred CchhccCCCc
Q psy12535 172 DFTQLLDAPE 181 (209)
Q Consensus 172 ~~~~~~~~~~ 181 (209)
.|.++|..+.
T Consensus 556 ~y~~l~~~~~ 565 (567)
T COG1132 556 LYARLYQAQG 565 (567)
T ss_pred HHHHHHHHhh
Confidence 8988886543
No 6
>KOG0054|consensus
Probab=99.97 E-value=8.5e-32 Score=273.96 Aligned_cols=140 Identities=54% Similarity=0.934 Sum_probs=131.2
Q ss_pred cCCCCCCCCCCcceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhh
Q psy12535 7 PMGPGHPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHL 86 (209)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~ 86 (209)
.||.+++.++|++++++|+|..+++.+|.|+.|.|||+|.+|||||||||+||||+++++||+|||+|+||+|.++.+++
T Consensus 603 LFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~i 682 (1381)
T KOG0054|consen 603 LFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHI 682 (1381)
T ss_pred hcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHH
Confidence 46888899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccccCCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeeccceeecchhhHH
Q psy12535 87 FEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQL 166 (209)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l 166 (209)
|+.|+.. ..++||+|+|||+++++..+|.|++|++|+|.+.|+++|+
T Consensus 683 f~~ci~~---------------------------------~L~~KT~ILVTHql~~L~~ad~Iivl~~G~I~~~Gty~el 729 (1381)
T KOG0054|consen 683 FEECIRG---------------------------------LLRGKTVILVTHQLQFLPHADQIIVLKDGKIVESGTYEEL 729 (1381)
T ss_pred HHHHHHh---------------------------------hhcCCEEEEEeCchhhhhhCCEEEEecCCeEecccCHHHH
Confidence 9999744 3478999999999999999999999999999999999999
Q ss_pred hhccCCchhccCC
Q psy12535 167 LASGLDFTQLLDA 179 (209)
Q Consensus 167 ~~~~~~~~~~~~~ 179 (209)
.+.+..+.++..+
T Consensus 730 ~~~~~~~~~l~~~ 742 (1381)
T KOG0054|consen 730 LKSGGDFAELAHE 742 (1381)
T ss_pred HhcchhHHHHhhc
Confidence 9888888777443
No 7
>KOG0055|consensus
Probab=99.97 E-value=3.9e-32 Score=272.28 Aligned_cols=138 Identities=30% Similarity=0.494 Sum_probs=123.2
Q ss_pred CCCCCCCcceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhh
Q psy12535 11 GHPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDC 90 (209)
Q Consensus 11 ~~~~~~~~~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~ 90 (209)
+++.+.+.++++.+..++||..+|+||+|++|++|.+|||||||||||||||+++|+||||||||||||+++++.+.+.+
T Consensus 453 dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~AL 532 (1228)
T KOG0055|consen 453 DATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEAL 532 (1228)
T ss_pred cccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHH
Confidence 45567777888888899999999999999999999999999999999999999999999999999999998777665532
Q ss_pred hhccccCCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeeccceeecchhhHHhhcc
Q psy12535 91 ITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASG 170 (209)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~~~~ 170 (209)
.. ..+|+|.|+|+|+++.++++|+|++|++|+|++.|+|+||++..
T Consensus 533 -d~---------------------------------~~~grTTivVaHRLStIrnaD~I~v~~~G~IvE~G~h~ELi~~~ 578 (1228)
T KOG0055|consen 533 -DK---------------------------------ASKGRTTIVVAHRLSTIRNADKIAVMEEGKIVEQGTHDELIALG 578 (1228)
T ss_pred -HH---------------------------------hhcCCeEEEEeeehhhhhccCEEEEEECCEEEEecCHHHHHhcc
Confidence 21 34789999999999999999999999999999999999999998
Q ss_pred CCchhccCCCch
Q psy12535 171 LDFTQLLDAPEE 182 (209)
Q Consensus 171 ~~~~~~~~~~~~ 182 (209)
+.|.+++..++.
T Consensus 579 G~Y~~lv~~Q~~ 590 (1228)
T KOG0055|consen 579 GIYSSLVRLQEL 590 (1228)
T ss_pred chHHHHHHHHhh
Confidence 889888876543
No 8
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.97 E-value=1.5e-31 Score=259.52 Aligned_cols=132 Identities=29% Similarity=0.516 Sum_probs=121.1
Q ss_pred CCCCCCCCcceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhh
Q psy12535 10 PGHPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFED 89 (209)
Q Consensus 10 ~~~~~~~~~~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~ 89 (209)
+..+++++.++++.+++++++..+|.|++|.+|++|.+|||||||||+||||++++|+|||||||||+||+.+++.+++.
T Consensus 578 ~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~ 657 (710)
T TIGR03796 578 PTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDN 657 (710)
T ss_pred CCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHH
Confidence 45667788889999999999999999999999999999999999999999999999999999999999999999988774
Q ss_pred hhhccccCCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeeccceeecchhhHHhhc
Q psy12535 90 CITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLAS 169 (209)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~~~ 169 (209)
+. ..++|+|+|||+++.+..+|+|++|++|+|++.|+++++++.
T Consensus 658 l~------------------------------------~~~~T~IiitHrl~~i~~~D~Iivl~~G~i~~~G~~~~Ll~~ 701 (710)
T TIGR03796 658 LR------------------------------------RRGCTCIIVAHRLSTIRDCDEIIVLERGKVVQRGTHEELWAV 701 (710)
T ss_pred HH------------------------------------hcCCEEEEEecCHHHHHhCCEEEEEeCCEEEEecCHHHHHHc
Confidence 31 147899999999999999999999999999999999999988
Q ss_pred cCCchhcc
Q psy12535 170 GLDFTQLL 177 (209)
Q Consensus 170 ~~~~~~~~ 177 (209)
.+.|.+++
T Consensus 702 ~~~y~~l~ 709 (710)
T TIGR03796 702 GGAYARLI 709 (710)
T ss_pred CCcHHHHh
Confidence 87787765
No 9
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.96 E-value=1.9e-31 Score=257.96 Aligned_cols=131 Identities=28% Similarity=0.444 Sum_probs=120.0
Q ss_pred CCCCCCcceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhh
Q psy12535 12 HPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCI 91 (209)
Q Consensus 12 ~~~~~~~~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~ 91 (209)
.+++++.++++.|++++++..+|.|++|.+|++|.+||||||||++||||++++|+|||||||||+||+.+++.+.+.+.
T Consensus 553 ~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~ 632 (686)
T TIGR03797 553 LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLE 632 (686)
T ss_pred CCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHH
Confidence 56777888999999999999999999999999999999999999999999999999999999999999999988877431
Q ss_pred hccccCCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeeccceeecchhhHHhhccC
Q psy12535 92 TGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGL 171 (209)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~~~~~ 171 (209)
. .++|+|+|||+++.+..+|+|++|++|+|++.|+++++.+..+
T Consensus 633 ---------------------------------~---~~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~G~~~~Ll~~~~ 676 (686)
T TIGR03797 633 ---------------------------------R---LKVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDELMAREG 676 (686)
T ss_pred ---------------------------------H---hCCeEEEEecChHHHHcCCEEEEEECCEEEEECCHHHHHhCCc
Confidence 1 1579999999999999999999999999999999999998877
Q ss_pred CchhccC
Q psy12535 172 DFTQLLD 178 (209)
Q Consensus 172 ~~~~~~~ 178 (209)
.|.+++.
T Consensus 677 ~y~~l~~ 683 (686)
T TIGR03797 677 LFAQLAR 683 (686)
T ss_pred HHHHHHH
Confidence 7877765
No 10
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.96 E-value=2.1e-31 Score=253.40 Aligned_cols=136 Identities=23% Similarity=0.391 Sum_probs=123.2
Q ss_pred CCCCCCCcceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhh
Q psy12535 11 GHPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDC 90 (209)
Q Consensus 11 ~~~~~~~~~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~ 90 (209)
+.+++++.++++.+++++++..+|.|++|.+|+.|.+||||||||++||||++++|+|||||||||+||+.+.+.+.+.+
T Consensus 440 ~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l 519 (592)
T PRK10790 440 DISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQAL 519 (592)
T ss_pred CCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 45667788899999999999999999999999999999999999999999999999999999999999999998887643
Q ss_pred hhccccCCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeeccceeecchhhHHhhcc
Q psy12535 91 ITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASG 170 (209)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~~~~ 170 (209)
. . ..+++|+|+|||+++.+..+|+|++|++|++++.|+++++.++.
T Consensus 520 ~---------------------------------~-~~~~~tvIivtHr~~~l~~~D~ii~l~~G~i~~~G~~~~L~~~~ 565 (592)
T PRK10790 520 A---------------------------------A-VREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQLLAAQ 565 (592)
T ss_pred H---------------------------------H-HhCCCEEEEEecchHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence 2 1 12478999999999999999999999999999999999999988
Q ss_pred CCchhccCCC
Q psy12535 171 LDFTQLLDAP 180 (209)
Q Consensus 171 ~~~~~~~~~~ 180 (209)
+.|.+++..+
T Consensus 566 ~~y~~l~~~~ 575 (592)
T PRK10790 566 GRYWQMYQLQ 575 (592)
T ss_pred CHHHHHHHHH
Confidence 8888888654
No 11
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.96 E-value=2.8e-31 Score=251.75 Aligned_cols=134 Identities=26% Similarity=0.457 Sum_probs=121.9
Q ss_pred CCCCCCcceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhh
Q psy12535 12 HPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCI 91 (209)
Q Consensus 12 ~~~~~~~~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~ 91 (209)
.++++++++++.+++++++..+|.|++|.+|++|.+||||||||++||||++++|+|||||||||+||+.+...+++.+.
T Consensus 445 ~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~ 524 (582)
T PRK11176 445 YSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALD 524 (582)
T ss_pred CCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHH
Confidence 56677888999999999999999999999999999999999999999999999999999999999999999998877432
Q ss_pred hccccCCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeeccceeecchhhHHhhccC
Q psy12535 92 TGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGL 171 (209)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~~~~~ 171 (209)
. ..+++|+|+|||+++.+..||+|++|++|+|++.|+++++++..+
T Consensus 525 ~----------------------------------~~~~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e~g~~~~l~~~~~ 570 (582)
T PRK11176 525 E----------------------------------LQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHAELLAQNG 570 (582)
T ss_pred H----------------------------------HhCCCEEEEEecchHHHHhCCEEEEEECCEEEEeCCHHHHHhCCC
Confidence 1 124789999999999999999999999999999999999999888
Q ss_pred CchhccCC
Q psy12535 172 DFTQLLDA 179 (209)
Q Consensus 172 ~~~~~~~~ 179 (209)
.|.+++..
T Consensus 571 ~y~~l~~~ 578 (582)
T PRK11176 571 VYAQLHKM 578 (582)
T ss_pred hHHHHHHH
Confidence 88888754
No 12
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=7.6e-31 Score=245.33 Aligned_cols=136 Identities=28% Similarity=0.522 Sum_probs=125.0
Q ss_pred CCCCCCCCCcceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhh
Q psy12535 9 GPGHPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFE 88 (209)
Q Consensus 9 ~~~~~~~~~~~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~ 88 (209)
.+++++|.+.++++.++|++.+...|+|++|++||.|..|||||+||++|||+|+++.+++||||||.|||+.+++++++
T Consensus 436 ~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ 515 (573)
T COG4987 436 NPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLA 515 (573)
T ss_pred CCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHH
Confidence 35567788999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred hhhhccccCCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeeccceeecchhhHHhh
Q psy12535 89 DCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLA 168 (209)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~~ 168 (209)
.+.. ..++||+|+|||++..++.+|+|++|++|+++++|++.+++.
T Consensus 516 ll~~----------------------------------~~~~kTll~vTHrL~~le~~drIivl~~Gkiie~G~~~~Ll~ 561 (573)
T COG4987 516 LLFE----------------------------------HAEGKTLLMVTHRLRGLERMDRIIVLDNGKIIEEGTHAELLA 561 (573)
T ss_pred HHHH----------------------------------HhcCCeEEEEecccccHhhcCEEEEEECCeeeecCCHHhhhc
Confidence 5432 236999999999999999999999999999999999999999
Q ss_pred ccCCchhccC
Q psy12535 169 SGLDFTQLLD 178 (209)
Q Consensus 169 ~~~~~~~~~~ 178 (209)
+.+.|.++++
T Consensus 562 ~~g~~~~l~q 571 (573)
T COG4987 562 NNGRYKRLYQ 571 (573)
T ss_pred cccHHHHHhc
Confidence 8888877754
No 13
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.96 E-value=1.2e-30 Score=253.27 Aligned_cols=134 Identities=25% Similarity=0.502 Sum_probs=120.5
Q ss_pred CCCCCCCCcceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhh
Q psy12535 10 PGHPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFED 89 (209)
Q Consensus 10 ~~~~~~~~~~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~ 89 (209)
+..+++++.++++.+++++++..+|.||+|.+|++|.+|||||||||+||||++++|+|||||||||+||+.+++.+.+.
T Consensus 574 ~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~ 653 (708)
T TIGR01193 574 ENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNN 653 (708)
T ss_pred CCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHH
Confidence 34566777888999999999999999999999999999999999999999999999999999999999999998888764
Q ss_pred hhhccccCCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeeccceeecchhhHHhhc
Q psy12535 90 CITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLAS 169 (209)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~~~ 169 (209)
+ .. .+++|+|+|||+++.+..+|+|++|++|++++.|+++++++.
T Consensus 654 L---------------------------------~~--~~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~~G~~~~L~~~ 698 (708)
T TIGR01193 654 L---------------------------------LN--LQDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSHDELLDR 698 (708)
T ss_pred H---------------------------------HH--hcCCEEEEEecchHHHHcCCEEEEEECCEEEEECCHHHHHhc
Confidence 3 22 147899999999999999999999999999999999999988
Q ss_pred cCCchhccC
Q psy12535 170 GLDFTQLLD 178 (209)
Q Consensus 170 ~~~~~~~~~ 178 (209)
.+.|.+++.
T Consensus 699 ~~~y~~l~~ 707 (708)
T TIGR01193 699 NGFYASLIH 707 (708)
T ss_pred CCcHHHHhh
Confidence 777877653
No 14
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.96 E-value=7.9e-31 Score=249.54 Aligned_cols=137 Identities=28% Similarity=0.493 Sum_probs=122.3
Q ss_pred CCCCCCCcceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhh
Q psy12535 11 GHPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDC 90 (209)
Q Consensus 11 ~~~~~~~~~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~ 90 (209)
+.+++++..+++.+++++++..+|.|++|.+|++|.+||||||||++||||++++|+|+|||||||+||+.+...+++.+
T Consensus 435 ~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l 514 (588)
T PRK13657 435 DATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAAL 514 (588)
T ss_pred CCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHH
Confidence 45566777888889999999999999999999999999999999999999999999999999999999999998887743
Q ss_pred hhccccCCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeeccceeecchhhHHhhcc
Q psy12535 91 ITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASG 170 (209)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~~~~ 170 (209)
. . ..+++|+|+|||+++.++.+|+|++|++|++++.|+++++.+..
T Consensus 515 ~---------------------------------~-~~~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~g~~~~l~~~~ 560 (588)
T PRK13657 515 D---------------------------------E-LMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFDELVARG 560 (588)
T ss_pred H---------------------------------H-HhcCCEEEEEEecHHHHHhCCEEEEEECCEEEEeCCHHHHHHCC
Confidence 2 1 12579999999999999999999999999999999999999888
Q ss_pred CCchhccCCCc
Q psy12535 171 LDFTQLLDAPE 181 (209)
Q Consensus 171 ~~~~~~~~~~~ 181 (209)
+.|.+++..+.
T Consensus 561 ~~y~~l~~~~~ 571 (588)
T PRK13657 561 GRFAALLRAQG 571 (588)
T ss_pred ChHHHHHHHhh
Confidence 88888876543
No 15
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.96 E-value=1.3e-30 Score=269.98 Aligned_cols=137 Identities=29% Similarity=0.461 Sum_probs=121.0
Q ss_pred CCCCCCCCcceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhh
Q psy12535 10 PGHPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFED 89 (209)
Q Consensus 10 ~~~~~~~~~~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~ 89 (209)
++++++.+.++++.++++++|..+|+||+|.||++|.+|||||||||+|||||+++|+|||||||||+||+.+++.+.+.
T Consensus 1321 ~~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~ 1400 (1466)
T PTZ00265 1321 EDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKT 1400 (1466)
T ss_pred CCCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHH
Confidence 44677788889999999999999999999999999999999999999999999999999999999999999998888764
Q ss_pred hhhccccCCCCccccchhhhhcccccccchhhhhhhhc-cccceeeeeeeehheecccceEEEeec----ccee-ecchh
Q psy12535 90 CITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSF-LKEKTVMLITHQIQYLTHVDHVMLLEK----GSVE-AFGTT 163 (209)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~TiIvitH~l~~l~~~DrV~~L~~----G~i~-~~G~~ 163 (209)
+. ... .+++|+|+|||+++.++.||+|++|++ |+++ +.|++
T Consensus 1401 L~---------------------------------~~~~~~~~TvIiIaHRlsti~~aD~Ivvl~~~~~~G~iv~e~Gth 1447 (1466)
T PTZ00265 1401 IV---------------------------------DIKDKADKTIITIAHRIASIKRSDKIVVFNNPDRTGSFVQAHGTH 1447 (1466)
T ss_pred HH---------------------------------HHhccCCCEEEEEechHHHHHhCCEEEEEeCCCCCCCEEEEecCH
Confidence 32 212 258999999999999999999999999 9954 89999
Q ss_pred hHHhh-ccCCchhccCC
Q psy12535 164 TQLLA-SGLDFTQLLDA 179 (209)
Q Consensus 164 ~~l~~-~~~~~~~~~~~ 179 (209)
++|++ .++.|.+++..
T Consensus 1448 ~eLl~~~~g~Y~~l~~~ 1464 (1466)
T PTZ00265 1448 EELLSVQDGVYKKYVKL 1464 (1466)
T ss_pred HHHHhcCCChHHHHHhh
Confidence 99998 47778777643
No 16
>PLN03232 ABC transporter C family member; Provisional
Probab=99.96 E-value=1.5e-30 Score=270.04 Aligned_cols=139 Identities=40% Similarity=0.741 Sum_probs=125.1
Q ss_pred CCCCCCCCCCcceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhh
Q psy12535 8 MGPGHPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLF 87 (209)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~ 87 (209)
+|.+++++++.+++++|++.+++..+|.|++|.+|++|.+|||||||||+||||++++|+|||||||||+||++++++++
T Consensus 701 fg~~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~ 780 (1495)
T PLN03232 701 FGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVF 780 (1495)
T ss_pred cCCccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHH
Confidence 34456778899999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhhhhccccCCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeeccceeecchhhHHh
Q psy12535 88 EDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLL 167 (209)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~ 167 (209)
+.++.. ..+++|+|+|||+++.+..+|+|++|++|+|++.|+++++.
T Consensus 781 ~~~l~~---------------------------------~l~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~~~Gt~~eL~ 827 (1495)
T PLN03232 781 DSCMKD---------------------------------ELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAELS 827 (1495)
T ss_pred HHHhhh---------------------------------hhcCCEEEEEECChhhHHhCCEEEEEeCCEEEEecCHHHHH
Confidence 876532 23689999999999999999999999999999999999999
Q ss_pred hccCCchhccCC
Q psy12535 168 ASGLDFTQLLDA 179 (209)
Q Consensus 168 ~~~~~~~~~~~~ 179 (209)
++...|.+++..
T Consensus 828 ~~~~~~~~l~~~ 839 (1495)
T PLN03232 828 KSGSLFKKLMEN 839 (1495)
T ss_pred hcchhHHHHHHh
Confidence 877667666543
No 17
>KOG0057|consensus
Probab=99.96 E-value=2.3e-30 Score=242.43 Aligned_cols=137 Identities=32% Similarity=0.608 Sum_probs=123.6
Q ss_pred CCCCCCCcceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhh
Q psy12535 11 GHPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDC 90 (209)
Q Consensus 11 ~~~~~~~~~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~ 90 (209)
..+++.+.++++.+++++.+.++|.||.|.||++|..|||||||||+||||++++|+|++||||||+||.+++..+++.+
T Consensus 451 sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i 530 (591)
T KOG0057|consen 451 SASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMI 530 (591)
T ss_pred CcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHH
Confidence 34556666777778899999999999999999999999999999999999999999999999999999999999998865
Q ss_pred hhccccCCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeeccceeecchhhHHhhcc
Q psy12535 91 ITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASG 170 (209)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~~~~ 170 (209)
.. ...++|+|+|.|+++.+..||+|++|+||++.+.|+++++++..
T Consensus 531 ~~----------------------------------~~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e~gth~ell~~s 576 (591)
T KOG0057|consen 531 MD----------------------------------VMSGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEYGTHSELLAPS 576 (591)
T ss_pred HH----------------------------------hcCCCeEEEEEecchhHhcCCEEEEEECCeeEEeccHHHHhhhh
Confidence 32 23689999999999999999999999999999999999999977
Q ss_pred CCchhccCCCc
Q psy12535 171 LDFTQLLDAPE 181 (209)
Q Consensus 171 ~~~~~~~~~~~ 181 (209)
..|.++|..+.
T Consensus 577 ~~~~~~w~~~~ 587 (591)
T KOG0057|consen 577 ELYADLWTTQT 587 (591)
T ss_pred hHHHHHhcccc
Confidence 77888887654
No 18
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.96 E-value=2e-30 Score=252.46 Aligned_cols=130 Identities=35% Similarity=0.545 Sum_probs=116.9
Q ss_pred CCCCCCCcceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhh
Q psy12535 11 GHPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDC 90 (209)
Q Consensus 11 ~~~~~~~~~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~ 90 (209)
..+++.+.++++.+++++++..+|+|++|.+|++|.+|||||||||+||||++++|+|||||||||+||+.+++.+.+ .
T Consensus 581 ~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~ 659 (711)
T TIGR00958 581 DTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE-S 659 (711)
T ss_pred CCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-h
Confidence 345677888999999999999999999999999999999999999999999999999999999999999998877755 1
Q ss_pred hhccccCCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeeccceeecchhhHHhhcc
Q psy12535 91 ITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASG 170 (209)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~~~~ 170 (209)
. ..+++|+|+|||+++.+..+|+|++|++|+|++.|++++++++.
T Consensus 660 ~-----------------------------------~~~~~TvIiItHrl~~i~~aD~IivL~~G~ive~Gt~~eL~~~~ 704 (711)
T TIGR00958 660 R-----------------------------------SRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQLMEDQ 704 (711)
T ss_pred h-----------------------------------ccCCCeEEEEeccHHHHHhCCEEEEEECCEEEEeeCHHHHHhCC
Confidence 0 12578999999999999999999999999999999999999887
Q ss_pred CCchhc
Q psy12535 171 LDFTQL 176 (209)
Q Consensus 171 ~~~~~~ 176 (209)
+.|.++
T Consensus 705 ~~y~~l 710 (711)
T TIGR00958 705 GCYKHL 710 (711)
T ss_pred CchHhc
Confidence 666654
No 19
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.4e-30 Score=245.32 Aligned_cols=137 Identities=31% Similarity=0.503 Sum_probs=123.7
Q ss_pred CCCCCCCCcceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhh
Q psy12535 10 PGHPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFED 89 (209)
Q Consensus 10 ~~~~~~~~~~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~ 89 (209)
+..+++.+.++++.+++.+++.. |.|+||.+|++|..|||||+|||++|||++++++++||||||++||.++++.+.+.
T Consensus 420 ~~~s~e~i~~al~~a~l~~~v~~-p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~ 498 (559)
T COG4988 420 PDASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQA 498 (559)
T ss_pred CcCCHHHHHHHHHHhcHHHhhcC-CCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHH
Confidence 33566788899999999999999 99999999999999999999999999999999999999999999999998888764
Q ss_pred hhhccccCCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeeccceeecchhhHHhhc
Q psy12535 90 CITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLAS 169 (209)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~~~ 169 (209)
+.. ..+++|+|+|||++..+..+|+|++|++|++++.|+++++.++
T Consensus 499 l~~----------------------------------l~~~ktvl~itHrl~~~~~~D~I~vld~G~l~~~g~~~~L~~~ 544 (559)
T COG4988 499 LQE----------------------------------LAKQKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSEK 544 (559)
T ss_pred HHH----------------------------------HHhCCeEEEEEcChHHHhcCCEEEEecCCceeccCCHHHHhhc
Confidence 322 2357999999999999999999999999999999999999999
Q ss_pred cCCchhccCCCc
Q psy12535 170 GLDFTQLLDAPE 181 (209)
Q Consensus 170 ~~~~~~~~~~~~ 181 (209)
.+.|.+++..+.
T Consensus 545 ~~~y~~l~~~q~ 556 (559)
T COG4988 545 QGLYANLLKQQE 556 (559)
T ss_pred CcHHHHHHHHHh
Confidence 888988876543
No 20
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.96 E-value=2.8e-30 Score=245.89 Aligned_cols=133 Identities=29% Similarity=0.478 Sum_probs=120.5
Q ss_pred CCCCCCCcceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhh
Q psy12535 11 GHPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDC 90 (209)
Q Consensus 11 ~~~~~~~~~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~ 90 (209)
+.+++.+.++++.+++++++.. |+||+|.+|++|.+||||||||++||||++++|++||||||||+||+.+++.+.+.+
T Consensus 440 ~~~~~~i~~al~~~~l~~~i~~-p~GldT~vge~g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l 518 (574)
T PRK11160 440 NASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELL 518 (574)
T ss_pred ccCHHHHHHHHHHcCCHHHHcC-ccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 4566777888999999999999 999999999999999999999999999999999999999999999999998887743
Q ss_pred hhccccCCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeeccceeecchhhHHhhcc
Q psy12535 91 ITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASG 170 (209)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~~~~ 170 (209)
. . ..+++|+|+|||+++.+..+|+|++|++|++++.|++++++++.
T Consensus 519 ~---------------------------------~-~~~~~tviiitHr~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~ 564 (574)
T PRK11160 519 A---------------------------------E-HAQNKTVLMITHRLTGLEQFDRICVMDNGQIIEQGTHQELLAQQ 564 (574)
T ss_pred H---------------------------------H-HcCCCEEEEEecChhHHHhCCEEEEEeCCeEEEeCCHHHHHhcC
Confidence 2 1 12578999999999999999999999999999999999999988
Q ss_pred CCchhccC
Q psy12535 171 LDFTQLLD 178 (209)
Q Consensus 171 ~~~~~~~~ 178 (209)
+.|.++|.
T Consensus 565 g~y~~l~~ 572 (574)
T PRK11160 565 GRYYQLKQ 572 (574)
T ss_pred cHHHHHHh
Confidence 88888764
No 21
>PLN03130 ABC transporter C family member; Provisional
Probab=99.96 E-value=2.9e-30 Score=269.41 Aligned_cols=138 Identities=43% Similarity=0.796 Sum_probs=124.6
Q ss_pred CCCCCCCCCCcceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhh
Q psy12535 8 MGPGHPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLF 87 (209)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~ 87 (209)
+|.+++++++.+++++|++.+++..+|.|++|.+|++|.+|||||||||+||||++++|+|||||||||+||+++.++++
T Consensus 701 fg~~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~ 780 (1622)
T PLN03130 701 FGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVF 780 (1622)
T ss_pred CCCcccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHH
Confidence 45556778899999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhhhhccccCCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeeccceeecchhhHHh
Q psy12535 88 EDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLL 167 (209)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~ 167 (209)
+.++.. ..+++|+|+|||+++.+..+|+|++|++|+|++.|+++++.
T Consensus 781 ~~~l~~---------------------------------~l~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i~e~Gt~~eL~ 827 (1622)
T PLN03130 781 DKCIKD---------------------------------ELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTYEELS 827 (1622)
T ss_pred HHHhhH---------------------------------HhcCCEEEEEECCHhHHHhCCEEEEEeCCEEEEeCCHHHHH
Confidence 876532 13589999999999999999999999999999999999998
Q ss_pred hccCCchhccC
Q psy12535 168 ASGLDFTQLLD 178 (209)
Q Consensus 168 ~~~~~~~~~~~ 178 (209)
+....|..++.
T Consensus 828 ~~~~~~~~l~~ 838 (1622)
T PLN03130 828 NNGPLFQKLME 838 (1622)
T ss_pred hcchhHHHHHH
Confidence 87666666554
No 22
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.96 E-value=5.6e-30 Score=248.05 Aligned_cols=125 Identities=31% Similarity=0.518 Sum_probs=114.0
Q ss_pred CCCCCCCcceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhh
Q psy12535 11 GHPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDC 90 (209)
Q Consensus 11 ~~~~~~~~~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~ 90 (209)
..+++++.++++.+++++++..+|.|++|.+|++|.+||||||||++||||++++|+|||||||||+||+.+++.+.+.+
T Consensus 565 ~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l 644 (694)
T TIGR03375 565 YADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRL 644 (694)
T ss_pred CCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHH
Confidence 45677788899999999999999999999999999999999999999999999999999999999999999999887743
Q ss_pred hhccccCCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeeccceeecchhhHHhhc
Q psy12535 91 ITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLAS 169 (209)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~~~ 169 (209)
. + ..+++|+|+|||+++.+..||+|++|++|++++.|+++++++.
T Consensus 645 ~---------------------------------~-~~~~~T~iiItHrl~~~~~~D~iivl~~G~i~e~G~~~eLl~~ 689 (694)
T TIGR03375 645 K---------------------------------R-WLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPKDQVLEA 689 (694)
T ss_pred H---------------------------------H-HhCCCEEEEEecCHHHHHhCCEEEEEeCCEEEeeCCHHHHHHH
Confidence 2 1 1257899999999999999999999999999999999999764
No 23
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.95 E-value=5.2e-30 Score=242.06 Aligned_cols=134 Identities=28% Similarity=0.472 Sum_probs=119.8
Q ss_pred CCCCCCCcceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhh
Q psy12535 11 GHPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDC 90 (209)
Q Consensus 11 ~~~~~~~~~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~ 90 (209)
+.+++++.++++.|++++++.++|.|++|.+|+.|..||||||||++||||++++|+|+|||||||+||..+.+.+++.+
T Consensus 433 ~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L 512 (571)
T TIGR02203 433 QADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAAL 512 (571)
T ss_pred CCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHH
Confidence 45667788899999999999999999999999999999999999999999999999999999999999999999887643
Q ss_pred hhccccCCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeeccceeecchhhHHhhcc
Q psy12535 91 ITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASG 170 (209)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~~~~ 170 (209)
. . ..+++|+|+|||+.+.+..||+|++|++|++++.|+++++.++.
T Consensus 513 ~---------------------------------~-~~~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~~g~~~~l~~~~ 558 (571)
T TIGR02203 513 E---------------------------------R-LMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNELLARN 558 (571)
T ss_pred H---------------------------------H-HhCCCEEEEEehhhHHHHhCCEEEEEeCCEEEeeCCHHHHHHcC
Confidence 2 1 23579999999999999999999999999999999999998776
Q ss_pred CCchhccC
Q psy12535 171 LDFTQLLD 178 (209)
Q Consensus 171 ~~~~~~~~ 178 (209)
..|.+++.
T Consensus 559 ~~~~~~~~ 566 (571)
T TIGR02203 559 GLYAQLHN 566 (571)
T ss_pred CHHHHHHH
Confidence 66666544
No 24
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.95 E-value=1.6e-29 Score=215.01 Aligned_cols=108 Identities=23% Similarity=0.485 Sum_probs=91.7
Q ss_pred eeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCC
Q psy12535 20 VVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVP 99 (209)
Q Consensus 20 ~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~ 99 (209)
.++..++.+..+.+| .+|||||||||||||||+.+|+++|+|||||||||+....+.+
T Consensus 120 lL~~VGL~~ka~~yP-----------~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~----------- 177 (240)
T COG1126 120 LLEKVGLADKADAYP-----------AQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLD----------- 177 (240)
T ss_pred HHHHcCchhhhhhCc-----------cccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHH-----------
Confidence 344445555555555 5999999999999999999999999999999999987777755
Q ss_pred Cccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecc-cceEEEeeccceeecchhhHHhhccC
Q psy12535 100 RFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQLLASGL 171 (209)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l~~~~~ 171 (209)
.++.+...|+|.|+|||++.+++. +|||++|++|+|+++|++++++.+..
T Consensus 178 ----------------------vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~p~ 228 (240)
T COG1126 178 ----------------------VMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDNPK 228 (240)
T ss_pred ----------------------HHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcCCC
Confidence 455556789999999999999987 69999999999999999999987754
No 25
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.8e-29 Score=231.04 Aligned_cols=136 Identities=25% Similarity=0.492 Sum_probs=123.8
Q ss_pred CCCCCCCCCcceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhh
Q psy12535 9 GPGHPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFE 88 (209)
Q Consensus 9 ~~~~~~~~~~~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~ 88 (209)
++..+++....+++++.++++|..+|+||+|.|||+|-.|||||||||+|||+++++|+||+|||.||+||.++++.+..
T Consensus 361 r~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~ 440 (497)
T COG5265 361 RPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQA 440 (497)
T ss_pred CccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHH
Confidence 34566778888999999999999999999999999999999999999999999999999999999999999999888755
Q ss_pred hhhhccccCCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeeccceeecchhhHHhh
Q psy12535 89 DCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLA 168 (209)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~~ 168 (209)
.+. + ...++|.++|.|+++.+..+|.|++|++|+|+|.|++++|+.
T Consensus 441 ~l~---------------------------------~-~~~~rttlviahrlsti~~adeiivl~~g~i~erg~h~~ll~ 486 (497)
T COG5265 441 ALR---------------------------------E-VSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVERGTHEELLA 486 (497)
T ss_pred HHH---------------------------------H-HhCCCeEEEEeehhhhccCCceEEEeeCCEEEecCcHHHHHH
Confidence 321 1 236899999999999999999999999999999999999999
Q ss_pred ccCCchhccC
Q psy12535 169 SGLDFTQLLD 178 (209)
Q Consensus 169 ~~~~~~~~~~ 178 (209)
.++.|.++|.
T Consensus 487 ~~g~ya~mw~ 496 (497)
T COG5265 487 AGGLYAEMWR 496 (497)
T ss_pred cCChHHHHhc
Confidence 9999998885
No 26
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.95 E-value=1.5e-29 Score=245.20 Aligned_cols=136 Identities=30% Similarity=0.510 Sum_probs=121.9
Q ss_pred CCCCCCCCcceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhh
Q psy12535 10 PGHPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFED 89 (209)
Q Consensus 10 ~~~~~~~~~~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~ 89 (209)
+..+++.+.++++.+++++++..+|.|++|.+|+.|.+||||||||++||||++++|+|||||||||+||+.++..+.+.
T Consensus 556 ~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~ 635 (694)
T TIGR01846 556 PGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRN 635 (694)
T ss_pred CCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHH
Confidence 34556677788888999999999999999999999999999999999999999999999999999999999999888774
Q ss_pred hhhccccCCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeeccceeecchhhHHhhc
Q psy12535 90 CITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLAS 169 (209)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~~~ 169 (209)
+. .. .+++|+|+|||+++.+..+|+|++|++|++++.|+++++.+.
T Consensus 636 l~---------------------------------~~-~~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~g~~~~l~~~ 681 (694)
T TIGR01846 636 MR---------------------------------EI-CRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEELLAL 681 (694)
T ss_pred HH---------------------------------HH-hCCCEEEEEeCChHHHHhCCEEEEEeCCEEEEeCCHHHHHHc
Confidence 32 21 257899999999999999999999999999999999999988
Q ss_pred cCCchhccCC
Q psy12535 170 GLDFTQLLDA 179 (209)
Q Consensus 170 ~~~~~~~~~~ 179 (209)
.+.|.+++..
T Consensus 682 ~~~y~~l~~~ 691 (694)
T TIGR01846 682 QGLYARLWQQ 691 (694)
T ss_pred CChHHHHHHh
Confidence 8888888754
No 27
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.95 E-value=2.8e-29 Score=261.06 Aligned_cols=135 Identities=27% Similarity=0.403 Sum_probs=121.9
Q ss_pred CCCCCCCcceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhh
Q psy12535 11 GHPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDC 90 (209)
Q Consensus 11 ~~~~~~~~~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~ 90 (209)
.++++.+.++++.|++++++..+|.|++|.+|++|.+||||||||++|||||+++|+|||||||||+||..+...+.+.+
T Consensus 1385 ~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l 1464 (1522)
T TIGR00957 1385 QYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTI 1464 (1522)
T ss_pred CCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHH
Confidence 56778888999999999999999999999999999999999999999999999999999999999999999887776532
Q ss_pred hhccccCCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeeccceeecchhhHHhhcc
Q psy12535 91 ITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASG 170 (209)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~~~~ 170 (209)
++ ..+++|+|+|+|+++.+..+|+|++|++|+|++.|+|++|+++.
T Consensus 1465 ---------------------------------~~-~~~~~TvI~IAHRl~ti~~~DrIlVld~G~IvE~G~~~eLl~~~ 1510 (1522)
T TIGR00957 1465 ---------------------------------RT-QFEDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEFGAPSNLLQQR 1510 (1522)
T ss_pred ---------------------------------HH-HcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHhCC
Confidence 22 23589999999999999999999999999999999999999887
Q ss_pred CCchhccCC
Q psy12535 171 LDFTQLLDA 179 (209)
Q Consensus 171 ~~~~~~~~~ 179 (209)
+.|.+++..
T Consensus 1511 ~~f~~l~~~ 1519 (1522)
T TIGR00957 1511 GIFYSMAKD 1519 (1522)
T ss_pred CHHHHHHHH
Confidence 777777643
No 28
>PLN03232 ABC transporter C family member; Provisional
Probab=99.95 E-value=5.2e-29 Score=258.71 Aligned_cols=137 Identities=24% Similarity=0.430 Sum_probs=122.3
Q ss_pred CCCCCCCcceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhh
Q psy12535 11 GHPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDC 90 (209)
Q Consensus 11 ~~~~~~~~~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~ 90 (209)
+++++.+.++++.|++++++..+|.|++|.+|++|.+||||||||++|||||+++|+|||||||||+||..+.+.+.+.+
T Consensus 1335 ~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L 1414 (1495)
T PLN03232 1335 EHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTI 1414 (1495)
T ss_pred CCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHH
Confidence 46677788899999999999999999999999999999999999999999999999999999999999999888776533
Q ss_pred hhccccCCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeeccceeecchhhHHhhcc
Q psy12535 91 ITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASG 170 (209)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~~~~ 170 (209)
++ ..+++|+|+|+|+++.+..+|+|++|++|+|++.|+|++|+++.
T Consensus 1415 ---------------------------------~~-~~~~~TvI~IAHRl~ti~~~DrIlVL~~G~ivE~Gt~~eLl~~~ 1460 (1495)
T PLN03232 1415 ---------------------------------RE-EFKSCTMLVIAHRLNTIIDCDKILVLSSGQVLEYDSPQELLSRD 1460 (1495)
T ss_pred ---------------------------------HH-HcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCC
Confidence 22 13589999999999999999999999999999999999999876
Q ss_pred C-CchhccCCCc
Q psy12535 171 L-DFTQLLDAPE 181 (209)
Q Consensus 171 ~-~~~~~~~~~~ 181 (209)
. .|.+++....
T Consensus 1461 ~~~f~~l~~~~~ 1472 (1495)
T PLN03232 1461 TSAFFRMVHSTG 1472 (1495)
T ss_pred CCHHHHHHHHhC
Confidence 4 6888776543
No 29
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.95 E-value=5.3e-29 Score=236.75 Aligned_cols=136 Identities=29% Similarity=0.518 Sum_probs=120.7
Q ss_pred CCCCCCCcceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhh
Q psy12535 11 GHPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDC 90 (209)
Q Consensus 11 ~~~~~~~~~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~ 90 (209)
..+++.+..+++.+++++++..+|.|++|.+|+++.+||||||||++||||++++|+|||||||||+||+.+...+.+.+
T Consensus 415 ~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l 494 (569)
T PRK10789 415 DATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNL 494 (569)
T ss_pred CCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHH
Confidence 34556677788888999999999999999999999999999999999999999999999999999999999988887743
Q ss_pred hhccccCCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeeccceeecchhhHHhhcc
Q psy12535 91 ITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASG 170 (209)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~~~~ 170 (209)
. . ..+++|+|+|||+++.+..+|+|++|++|++++.|+++++.+..
T Consensus 495 ~---------------------------------~-~~~~~tii~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~ 540 (569)
T PRK10789 495 R---------------------------------Q-WGEGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQQS 540 (569)
T ss_pred H---------------------------------H-HhCCCEEEEEecchhHHHcCCEEEEEeCCEEEEecCHHHHHHcC
Confidence 2 2 12588999999999999999999999999999999999999888
Q ss_pred CCchhccCCC
Q psy12535 171 LDFTQLLDAP 180 (209)
Q Consensus 171 ~~~~~~~~~~ 180 (209)
+.|.+++..+
T Consensus 541 ~~y~~l~~~~ 550 (569)
T PRK10789 541 GWYRDMYRYQ 550 (569)
T ss_pred ChHHHHHHHh
Confidence 7888877543
No 30
>PLN03130 ABC transporter C family member; Provisional
Probab=99.95 E-value=4.2e-29 Score=260.70 Aligned_cols=136 Identities=27% Similarity=0.475 Sum_probs=121.4
Q ss_pred CCCCCCCcceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhh
Q psy12535 11 GHPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDC 90 (209)
Q Consensus 11 ~~~~~~~~~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~ 90 (209)
+++++.+.++++.|++++++..+|.|++|.+|++|.+|||||||||+|||||+++|+|||||||||+||..+...+.+.+
T Consensus 1338 ~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I 1417 (1622)
T PLN03130 1338 EHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTI 1417 (1622)
T ss_pred CCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHH
Confidence 45677888999999999999999999999999999999999999999999999999999999999999999988776533
Q ss_pred hhccccCCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeeccceeecchhhHHhhc-
Q psy12535 91 ITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLAS- 169 (209)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~~~- 169 (209)
++. .+++|+|+|+|+++.+..||+|++|++|+|++.|+|++|+++
T Consensus 1418 ---------------------------------~~~-~~~~TvI~IAHRL~tI~~~DrIlVLd~G~IvE~Gt~~eLl~~~ 1463 (1622)
T PLN03130 1418 ---------------------------------REE-FKSCTMLIIAHRLNTIIDCDRILVLDAGRVVEFDTPENLLSNE 1463 (1622)
T ss_pred ---------------------------------HHH-CCCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHhCC
Confidence 222 358999999999999999999999999999999999999986
Q ss_pred cCCchhccCCC
Q psy12535 170 GLDFTQLLDAP 180 (209)
Q Consensus 170 ~~~~~~~~~~~ 180 (209)
++.|.+++...
T Consensus 1464 ~g~f~~L~~~~ 1474 (1622)
T PLN03130 1464 GSAFSKMVQST 1474 (1622)
T ss_pred CCHHHHHHHHc
Confidence 46677776543
No 31
>KOG0056|consensus
Probab=99.95 E-value=6.9e-29 Score=230.85 Aligned_cols=139 Identities=23% Similarity=0.520 Sum_probs=124.6
Q ss_pred CCCCCCCCcceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhh
Q psy12535 10 PGHPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFED 89 (209)
Q Consensus 10 ~~~~~~~~~~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~ 89 (209)
+.++++.+.++++++++++.|..+|+||+|.|||+|-.|||||||||||||++++.|.+++|||+||+||..+++.+-.
T Consensus 637 ~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQa- 715 (790)
T KOG0056|consen 637 PSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQA- 715 (790)
T ss_pred CCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHH-
Confidence 4567788889999999999999999999999999999999999999999999999999999999999999998887744
Q ss_pred hhhccccCCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeeccceeecchhhHHhhc
Q psy12535 90 CITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLAS 169 (209)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~~~ 169 (209)
++.. .-.++|.|+|.|+++.+-++|.|+++++|+|++.|+++|+...
T Consensus 716 aL~r---------------------------------lca~RTtIVvAHRLSTivnAD~ILvi~~G~IvErG~HeeLl~r 762 (790)
T KOG0056|consen 716 ALAR---------------------------------LCANRTTIVVAHRLSTIVNADLILVISNGRIVERGRHEELLKR 762 (790)
T ss_pred HHHH---------------------------------HhcCCceEEEeeeehheecccEEEEEeCCeEeecCcHHHHHhc
Confidence 2222 1358899999999999999999999999999999999999976
Q ss_pred -cCCchhccCCCch
Q psy12535 170 -GLDFTQLLDAPEE 182 (209)
Q Consensus 170 -~~~~~~~~~~~~~ 182 (209)
++.|.++|+.+..
T Consensus 763 dgG~Ya~MWq~qqa 776 (790)
T KOG0056|consen 763 DGGAYADMWQAQQA 776 (790)
T ss_pred cCCcHHHHHHHHHh
Confidence 6789999975544
No 32
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.95 E-value=1.3e-28 Score=233.01 Aligned_cols=134 Identities=32% Similarity=0.536 Sum_probs=119.1
Q ss_pred CCCCCCcceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhh
Q psy12535 12 HPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCI 91 (209)
Q Consensus 12 ~~~~~~~~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~ 91 (209)
.+++++.++++.+++.+++..+|.|++|.+|+.|..||||||||++||||++++|++||||||||+||+.+++.+++.+.
T Consensus 441 ~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~ 520 (576)
T TIGR02204 441 ATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALE 520 (576)
T ss_pred CCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHH
Confidence 45567778888899999999999999999999999999999999999999999999999999999999998887766432
Q ss_pred hccccCCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeeccceeecchhhHHhhccC
Q psy12535 92 TGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGL 171 (209)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~~~~~ 171 (209)
.. .+++|+|+|||+++.+..+|+|++|++|++++.|+++++.+...
T Consensus 521 ---------------------------------~~-~~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~g~~~~l~~~~~ 566 (576)
T TIGR02204 521 ---------------------------------TL-MKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAELIAKGG 566 (576)
T ss_pred ---------------------------------HH-hCCCEEEEEecchHHHHhCCEEEEEECCEEEeeecHHHHHHcCC
Confidence 21 25789999999999999999999999999999999999988877
Q ss_pred CchhccCC
Q psy12535 172 DFTQLLDA 179 (209)
Q Consensus 172 ~~~~~~~~ 179 (209)
.|.+++..
T Consensus 567 ~~~~l~~~ 574 (576)
T TIGR02204 567 LYARLARL 574 (576)
T ss_pred hHHHHHhh
Confidence 78777643
No 33
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.94 E-value=6.7e-29 Score=220.14 Aligned_cols=103 Identities=27% Similarity=0.428 Sum_probs=88.1
Q ss_pred CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535 36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG 115 (209)
Q Consensus 36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (209)
|+....+..+.+|||||||||+|||||+.+|+|||.|||||||||.+.+.+.+.
T Consensus 130 gL~dk~~~yP~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~L-------------------------- 183 (339)
T COG1135 130 GLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILEL-------------------------- 183 (339)
T ss_pred CChhhhccCchhcCcchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHH--------------------------
Confidence 344444555679999999999999999999999999999999999999888773
Q ss_pred ccchhhhhhhhcc-ccceeeeeeeehheecc-cceEEEeeccceeecchhhHHhhccC
Q psy12535 116 VRGALSLVRTSFL-KEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQLLASGL 171 (209)
Q Consensus 116 ~~~~~~~~~~~~~-~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l~~~~~ 171 (209)
++...+ -|-||++|||.|+.++. ||||++|++|+|+++|+..+++.+..
T Consensus 184 -------L~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF~~Pk 234 (339)
T COG1135 184 -------LKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVFANPK 234 (339)
T ss_pred -------HHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhhcCcc
Confidence 223332 38899999999999986 89999999999999999999988753
No 34
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.94 E-value=1.4e-28 Score=234.83 Aligned_cols=135 Identities=28% Similarity=0.471 Sum_probs=119.3
Q ss_pred CCCCCCcceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhh
Q psy12535 12 HPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCI 91 (209)
Q Consensus 12 ~~~~~~~~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~ 91 (209)
.+++...++++.+++++++..+|.|++|.+|+.+..||||||||++|||||+++|++||||||||+||+.+++.+.+.+
T Consensus 436 ~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l- 514 (585)
T TIGR01192 436 ATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAI- 514 (585)
T ss_pred CCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHH-
Confidence 3445566677778899999999999999999999999999999999999999999999999999999999988886643
Q ss_pred hccccCCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeeccceeecchhhHHhhccC
Q psy12535 92 TGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGL 171 (209)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~~~~~ 171 (209)
.. ..+++|+|+|||+++.+..+|+|++|++|++++.|+++++.++.+
T Consensus 515 --------------------------------~~-~~~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~ 561 (585)
T TIGR01192 515 --------------------------------DA-LRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQELIQKDG 561 (585)
T ss_pred --------------------------------HH-HhCCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHHHHHHCCC
Confidence 12 135789999999999998899999999999999999999998888
Q ss_pred CchhccCCC
Q psy12535 172 DFTQLLDAP 180 (209)
Q Consensus 172 ~~~~~~~~~ 180 (209)
.|.+++...
T Consensus 562 ~y~~l~~~~ 570 (585)
T TIGR01192 562 RFYKLLRRS 570 (585)
T ss_pred hHHHHHHhC
Confidence 888887654
No 35
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.94 E-value=1.9e-28 Score=231.49 Aligned_cols=124 Identities=33% Similarity=0.519 Sum_probs=110.0
Q ss_pred CCCCCCcceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhh
Q psy12535 12 HPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCI 91 (209)
Q Consensus 12 ~~~~~~~~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~ 91 (209)
.+++.+.++++.+++++++..+|.|++|.+|+++.+||||||||++||||++++|++||||||||+||+.++..+.+.+.
T Consensus 419 ~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~ 498 (544)
T TIGR01842 419 ADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIK 498 (544)
T ss_pred CCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHH
Confidence 45566667788889999999999999999999999999999999999999999999999999999999998888876432
Q ss_pred hccccCCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeeccceeecchhhHHhh
Q psy12535 92 TGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLA 168 (209)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~~ 168 (209)
....+++|+|+|||+++.+..+|+|++|++|++++.|+++++.+
T Consensus 499 ---------------------------------~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 542 (544)
T TIGR01842 499 ---------------------------------ALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLA 542 (544)
T ss_pred ---------------------------------HHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeCCHHHHhh
Confidence 22225789999999999888899999999999999999998864
No 36
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.94 E-value=1.6e-28 Score=228.61 Aligned_cols=131 Identities=32% Similarity=0.522 Sum_probs=118.2
Q ss_pred ccCCCCCCCCCCcceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhh
Q psy12535 6 APMGPGHPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKH 85 (209)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~ 85 (209)
+.|+.+.+.+.+-++++.++.|+.|.++|+||+|.+|+.|..|||||||||+|||||+.+|.+++||||.|+||..-+..
T Consensus 431 aRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~A 510 (580)
T COG4618 431 ARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAA 510 (580)
T ss_pred HhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHH
Confidence 45666777777888888899999999999999999999999999999999999999999999999999999999988877
Q ss_pred hhhhhhhccccCCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeeccceeecchhhH
Q psy12535 86 LFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQ 165 (209)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~ 165 (209)
+.+.+. ..+.+|.|+|+|||+++.+..+|+|++|++|++..+|+.+|
T Consensus 511 L~~Ai~---------------------------------~~k~rG~~vvviaHRPs~L~~~Dkilvl~~G~~~~FG~r~e 557 (580)
T COG4618 511 LAAAIL---------------------------------AAKARGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREE 557 (580)
T ss_pred HHHHHH---------------------------------HHHHcCCEEEEEecCHHHHhhcceeeeecCChHHhcCCHHH
Confidence 766433 22457899999999999999999999999999999999999
Q ss_pred Hhhc
Q psy12535 166 LLAS 169 (209)
Q Consensus 166 l~~~ 169 (209)
++++
T Consensus 558 VLa~ 561 (580)
T COG4618 558 VLAK 561 (580)
T ss_pred HHHH
Confidence 9865
No 37
>PTZ00243 ABC transporter; Provisional
Probab=99.94 E-value=1.3e-28 Score=256.35 Aligned_cols=136 Identities=21% Similarity=0.401 Sum_probs=121.6
Q ss_pred CCCCCCCcceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhh-cceeeccCcchhhhhhhhhhhhhh
Q psy12535 11 GHPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKR-ADVYLLDDPLSAVDAHVGKHLFED 89 (209)
Q Consensus 11 ~~~~~~~~~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~-p~illLDEPts~LD~~~~~~~~~~ 89 (209)
.++++.++++++.|++++++..+|.|++|.+|++|.+|||||||||+|||||+++ |+|||||||||+||+.+.+.+.+.
T Consensus 1409 ~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~ 1488 (1560)
T PTZ00243 1409 EASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQAT 1488 (1560)
T ss_pred CCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHH
Confidence 5677888999999999999999999999999999999999999999999999996 899999999999999998888663
Q ss_pred hhhccccCCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeeccceeecchhhHHhhc
Q psy12535 90 CITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLAS 169 (209)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~~~ 169 (209)
+. + ..+++|+|+|+|+++.+..+|+|++|++|+|++.|++++|+++
T Consensus 1489 L~---------------------------------~-~~~~~TvI~IAHRl~ti~~~DrIlVLd~G~VvE~Gt~~eLl~~ 1534 (1560)
T PTZ00243 1489 VM---------------------------------S-AFSAYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELVMN 1534 (1560)
T ss_pred HH---------------------------------H-HCCCCEEEEEeccHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 32 2 2357999999999999999999999999999999999999975
Q ss_pred -cCCchhccCCC
Q psy12535 170 -GLDFTQLLDAP 180 (209)
Q Consensus 170 -~~~~~~~~~~~ 180 (209)
...|.+++...
T Consensus 1535 ~~~~f~~l~~~~ 1546 (1560)
T PTZ00243 1535 RQSIFHSMVEAL 1546 (1560)
T ss_pred CCCHHHHHHHHh
Confidence 56788777554
No 38
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.93 E-value=8.1e-28 Score=249.75 Aligned_cols=136 Identities=24% Similarity=0.364 Sum_probs=121.6
Q ss_pred CCCCCCCcceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhh
Q psy12535 11 GHPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDC 90 (209)
Q Consensus 11 ~~~~~~~~~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~ 90 (209)
.++++.+.++++.|++.+++..+|.|++|.+++.|.+|||||||||+|||||+++|+|||||||||+||..+...+.+.+
T Consensus 1317 ~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L 1396 (1490)
T TIGR01271 1317 QWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTL 1396 (1490)
T ss_pred CCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 35677888999999999999999999999999999999999999999999999999999999999999999988886643
Q ss_pred hhccccCCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeeccceeecchhhHHhhcc
Q psy12535 91 ITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASG 170 (209)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~~~~ 170 (209)
. . ..+++|||+|||+++.+..+|+|++|++|+|++.|+|.+|++..
T Consensus 1397 ~---------------------------------~-~~~~~TvI~IaHRl~ti~~~DrIlvL~~G~ivE~g~p~~Ll~~~ 1442 (1490)
T TIGR01271 1397 K---------------------------------Q-SFSNCTVILSEHRVEALLECQQFLVIEGSSVKQYDSIQKLLNET 1442 (1490)
T ss_pred H---------------------------------H-HcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHHcCC
Confidence 2 2 23579999999999999999999999999999999999999766
Q ss_pred CCchhccCCC
Q psy12535 171 LDFTQLLDAP 180 (209)
Q Consensus 171 ~~~~~~~~~~ 180 (209)
..|.+++...
T Consensus 1443 ~~f~~l~~~~ 1452 (1490)
T TIGR01271 1443 SLFKQAMSAA 1452 (1490)
T ss_pred cHHHHHHHHh
Confidence 6677776543
No 39
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.93 E-value=2.6e-27 Score=204.26 Aligned_cols=125 Identities=23% Similarity=0.436 Sum_probs=99.9
Q ss_pred CCccccCCCCCCCCCCcceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhh
Q psy12535 2 GPILAPMGPGHPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAH 81 (209)
Q Consensus 2 g~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~ 81 (209)
|+...++..+...++...+++.+++.+...+.|. .||||||||||||.+|+.+|++||||||||+||+.
T Consensus 104 g~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~-----------~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~ 172 (235)
T COG1122 104 GLENLGLPREEIEERVAEALELVGLEELLDRPPF-----------NLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPK 172 (235)
T ss_pred chhhcCCCHHHHHHHHHHHHHHcCchhhccCCcc-----------ccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHH
Confidence 4333333332223455667777777777666665 99999999999999999999999999999999999
Q ss_pred hhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhhhhhhccc-cceeeeeeeehheecc-cceEEEeeccceee
Q psy12535 82 VGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLK-EKTVMLITHQIQYLTH-VDHVMLLEKGSVEA 159 (209)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~ 159 (209)
..+.+++ +++++... ++|+|++||+++.+.. +|+|++|++|+++.
T Consensus 173 ~~~~l~~---------------------------------~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~ 219 (235)
T COG1122 173 GRRELLE---------------------------------LLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILA 219 (235)
T ss_pred HHHHHHH---------------------------------HHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEee
Confidence 8888866 34444444 6899999999999876 89999999999999
Q ss_pred cchhhHHhhcc
Q psy12535 160 FGTTTQLLASG 170 (209)
Q Consensus 160 ~G~~~~l~~~~ 170 (209)
+|++.+++++.
T Consensus 220 ~g~p~~i~~~~ 230 (235)
T COG1122 220 DGDPAEIFNDA 230 (235)
T ss_pred cCCHHHHhhhh
Confidence 99999988653
No 40
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.93 E-value=3.6e-27 Score=207.04 Aligned_cols=133 Identities=24% Similarity=0.403 Sum_probs=114.9
Q ss_pred CCCCcceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhc
Q psy12535 14 DPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITG 93 (209)
Q Consensus 14 ~~~~~~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~ 93 (209)
.+++.++++.+++.+++..+|.+++|.+++.+..||||||||++||||++.+|+||||||||++||+.+...+.+.+
T Consensus 105 ~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l--- 181 (275)
T cd03289 105 DEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTL--- 181 (275)
T ss_pred HHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHH---
Confidence 34556677788999999999999999999999999999999999999999999999999999999999887776532
Q ss_pred cccCCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeeccceeecchhhHHhhccCCc
Q psy12535 94 LHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGLDF 173 (209)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~~~~~~~ 173 (209)
+.. ..++|||+|||+++.+..||+|++|++|++++.|+++++..+...|
T Consensus 182 ------------------------------~~~-~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~~~~~~ 230 (275)
T cd03289 182 ------------------------------KQA-FADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNEKSHF 230 (275)
T ss_pred ------------------------------HHh-cCCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhhCcHHH
Confidence 221 2478999999999998889999999999999999999999876556
Q ss_pred hhccCCC
Q psy12535 174 TQLLDAP 180 (209)
Q Consensus 174 ~~~~~~~ 180 (209)
.+++...
T Consensus 231 ~~~~~~~ 237 (275)
T cd03289 231 KQAISPS 237 (275)
T ss_pred HHHHhhc
Confidence 6666544
No 41
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.93 E-value=7e-27 Score=242.31 Aligned_cols=135 Identities=22% Similarity=0.366 Sum_probs=115.8
Q ss_pred CCCCCcceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhh
Q psy12535 13 PDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCIT 92 (209)
Q Consensus 13 ~~~~~~~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~ 92 (209)
+++.+.++++.+++++++..+|.||+|.+|+++.+|||||||||+|||||+++|+|||||||||+||+.++..+.+.+
T Consensus 545 ~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L-- 622 (1466)
T PTZ00265 545 KDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTI-- 622 (1466)
T ss_pred CHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHH--
Confidence 334556677778899999999999999999999999999999999999999999999999999999999888886633
Q ss_pred ccccCCCCccccchhhhhcccccccchhhhhhhhcc-ccceeeeeeeehheecccceEEEeecc----------------
Q psy12535 93 GLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFL-KEKTVMLITHQIQYLTHVDHVMLLEKG---------------- 155 (209)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~TiIvitH~l~~l~~~DrV~~L~~G---------------- 155 (209)
.+... +++|+|+|||+++.+..||+|++|++|
T Consensus 623 -------------------------------~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~g~~g~~~~~~~~~~~~~ 671 (1466)
T PTZ00265 623 -------------------------------NNLKGNENRITIIIAHRLSTIRYANTIFVLSNRERGSTVDVDIIGEDPT 671 (1466)
T ss_pred -------------------------------HHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeCCcccccccccccccccc
Confidence 22222 478999999999999889999999986
Q ss_pred -------------------------------ceeecchhhHHhh-ccCCchhccCCC
Q psy12535 156 -------------------------------SVEAFGTTTQLLA-SGLDFTQLLDAP 180 (209)
Q Consensus 156 -------------------------------~i~~~G~~~~l~~-~~~~~~~~~~~~ 180 (209)
+|+++|++++|++ ..+.|..+...+
T Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ive~Gth~~L~~~~~g~y~~l~~~q 728 (1466)
T PTZ00265 672 KDNKENNNKNNKDDNNNNNNNNNNKINNAGSYIIEQGTHDALMKNKNGIYYTMINNQ 728 (1466)
T ss_pred ccccccccccccccccccccccccccccCCceeEeeCCHHHHHhccCCcHHHHHhhh
Confidence 4999999999997 466777776443
No 42
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.92 E-value=9.5e-27 Score=207.25 Aligned_cols=114 Identities=24% Similarity=0.425 Sum_probs=93.3
Q ss_pred CCCcceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhcc
Q psy12535 15 PNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGL 94 (209)
Q Consensus 15 ~~~~~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~ 94 (209)
++..++++.++|..+-...|. +|||||||||.|||||+.+|+|||+|||+|+|||-.+..+-++++..
T Consensus 143 ~~a~~~l~~VgL~~~~~~yp~-----------eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~L- 210 (386)
T COG4175 143 ERALEALELVGLEGYADKYPN-----------ELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLEL- 210 (386)
T ss_pred HHHHHHHHHcCchhhhhcCcc-----------cccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHH-
Confidence 344455666666666666664 99999999999999999999999999999999998887776654422
Q ss_pred ccCCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehhee-cccceEEEeeccceeecchhhHHhhccC
Q psy12535 95 HTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYL-THVDHVMLLEKGSVEAFGTTTQLLASGL 171 (209)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l-~~~DrV~~L~~G~i~~~G~~~~l~~~~~ 171 (209)
. ..-.||||+||||++.. +..|||.+|++|+|++.|+|+|+..+..
T Consensus 211 ----------------------------q---~~l~KTIvFitHDLdEAlriG~rIaimkdG~ivQ~Gtp~eIl~~PA 257 (386)
T COG4175 211 ----------------------------Q---AKLKKTIVFITHDLDEALRIGDRIAIMKDGEIVQVGTPEEILLNPA 257 (386)
T ss_pred ----------------------------H---HHhCCeEEEEecCHHHHHhccceEEEecCCeEEEeCCHHHHHcCcc
Confidence 1 22378999999999874 5689999999999999999999987654
No 43
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.92 E-value=2.2e-26 Score=239.45 Aligned_cols=136 Identities=50% Similarity=0.838 Sum_probs=118.7
Q ss_pred CCCCCCCcceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhh
Q psy12535 11 GHPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDC 90 (209)
Q Consensus 11 ~~~~~~~~~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~ 90 (209)
+.+++++.+++++|++.+++..+|.|++|.+|++|.+|||||||||+||||++.+|+|+|||||||+||+.+.+.+++.+
T Consensus 724 ~~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l 803 (1522)
T TIGR00957 724 ALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHV 803 (1522)
T ss_pred ccCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHH
Confidence 34455677888999999999999999999999999999999999999999999999999999999999999999998865
Q ss_pred hhccccCCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeeccceeecchhhHHhhcc
Q psy12535 91 ITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASG 170 (209)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~~~~ 170 (209)
+.. ....+++|+|+|||+++.+..+|+|++|++|++++.|+++++.+..
T Consensus 804 ~~~-------------------------------~~~~~~~tvIlvTH~~~~l~~~D~ii~l~~G~i~~~g~~~~l~~~~ 852 (1522)
T TIGR00957 804 IGP-------------------------------EGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELLQRD 852 (1522)
T ss_pred hhh-------------------------------hhhhcCCEEEEEeCChhhhhhCCEEEEecCCeEEeeCCHHHHHhcc
Confidence 421 0013578999999999999889999999999999999999998766
Q ss_pred CCchhcc
Q psy12535 171 LDFTQLL 177 (209)
Q Consensus 171 ~~~~~~~ 177 (209)
..|.+++
T Consensus 853 ~~~~~l~ 859 (1522)
T TIGR00957 853 GAFAEFL 859 (1522)
T ss_pred hhHHHHH
Confidence 5565554
No 44
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.92 E-value=1.3e-26 Score=199.72 Aligned_cols=94 Identities=30% Similarity=0.546 Sum_probs=82.4
Q ss_pred ccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhh
Q psy12535 43 DKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSL 122 (209)
Q Consensus 43 ~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (209)
+++.+|||||+|||||||||+.+|++||||||||+||...+.++++-+.
T Consensus 137 R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~------------------------------- 185 (252)
T COG1124 137 RRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLL------------------------------- 185 (252)
T ss_pred cCchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHH-------------------------------
Confidence 3344999999999999999999999999999999999998888876332
Q ss_pred hhhhc-cccceeeeeeeehheecc-cceEEEeeccceeecchhhHHhhc
Q psy12535 123 VRTSF-LKEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQLLAS 169 (209)
Q Consensus 123 ~~~~~-~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l~~~ 169 (209)
+.. ..+.|.|+||||+..+.+ ||||+||++|++++.++..++...
T Consensus 186 --~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~~ 232 (252)
T COG1124 186 --ELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLSH 232 (252)
T ss_pred --HHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhcC
Confidence 222 247799999999999987 899999999999999999999876
No 45
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.92 E-value=2e-26 Score=200.28 Aligned_cols=98 Identities=28% Similarity=0.436 Sum_probs=83.8
Q ss_pred cccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhh
Q psy12535 42 GDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALS 121 (209)
Q Consensus 42 g~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (209)
.+.+.+|||||+|||.+||||+.+|+|+||||||+||||.++..+-+.+...
T Consensus 130 ~RyP~eLSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~l---------------------------- 181 (309)
T COG1125 130 DRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKEL---------------------------- 181 (309)
T ss_pred hcCchhcCcchhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHH----------------------------
Confidence 3444599999999999999999999999999999999999988886643221
Q ss_pred hhhhhccccceeeeeeeehhee-cccceEEEeeccceeecchhhHHhhccC
Q psy12535 122 LVRTSFLKEKTVMLITHQIQYL-THVDHVMLLEKGSVEAFGTTTQLLASGL 171 (209)
Q Consensus 122 ~~~~~~~~~~TiIvitH~l~~l-~~~DrV~~L~~G~i~~~G~~~~l~~~~~ 171 (209)
+..-++|||+||||++.+ ..+|||++|++|+|++.++|++++.+..
T Consensus 182 ----q~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~Pa 228 (309)
T COG1125 182 ----QKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANPA 228 (309)
T ss_pred ----HHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhCcc
Confidence 122489999999999875 5689999999999999999999998754
No 46
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.91 E-value=1.3e-26 Score=197.08 Aligned_cols=115 Identities=28% Similarity=0.422 Sum_probs=93.3
Q ss_pred CCCcceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhcc
Q psy12535 15 PNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGL 94 (209)
Q Consensus 15 ~~~~~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~ 94 (209)
+.++.+++.++|++.+.+ .+.+.+.+|||||||||+|||||+.+|+|||||||||+|||.+...+-+ ++..
T Consensus 124 eiVe~sLk~AaLWdEVKD-------rL~~sa~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEe-Li~e- 194 (253)
T COG1117 124 EIVESSLKKAALWDEVKD-------RLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEE-LITE- 194 (253)
T ss_pred HHHHHHHHHhHhHHHhHH-------HhhCCccCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHH-HHHH-
Confidence 445666777777765432 2334566899999999999999999999999999999999988777744 3322
Q ss_pred ccCCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecc-cceEEEeeccceeecchhhHHhhcc
Q psy12535 95 HTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQLLASG 170 (209)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l~~~~ 170 (209)
+ +++-|||+|||++..+.. +|+++++..|++++.|+.++++.+.
T Consensus 195 -------------------------------L-k~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~iF~~P 239 (253)
T COG1117 195 -------------------------------L-KKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKIFTNP 239 (253)
T ss_pred -------------------------------H-HhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHhhhcCc
Confidence 2 256799999999998776 6999999999999999999998764
No 47
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.91 E-value=6.1e-26 Score=235.78 Aligned_cols=134 Identities=43% Similarity=0.748 Sum_probs=116.9
Q ss_pred CCCCCCCCCcceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhh
Q psy12535 9 GPGHPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFE 88 (209)
Q Consensus 9 ~~~~~~~~~~~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~ 88 (209)
|..++.+++.+++++|++.+++..+|.|++|.+|++|.+|||||||||+||||++.+|+|||||||||+||+.+.+++++
T Consensus 510 g~~~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~ 589 (1490)
T TIGR01271 510 GLSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFE 589 (1490)
T ss_pred ccccchHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHH
Confidence 33344456777888999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred hhhhccccCCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeeccceeecchhhHHhh
Q psy12535 89 DCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLA 168 (209)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~~ 168 (209)
.|+.. ..+++|+|+|||+++.+..||+|++|++|++++.|+++++..
T Consensus 590 ~~l~~---------------------------------~~~~~tvilvtH~~~~~~~ad~ii~l~~g~i~~~g~~~~l~~ 636 (1490)
T TIGR01271 590 SCLCK---------------------------------LMSNKTRILVTSKLEHLKKADKILLLHEGVCYFYGTFSELQA 636 (1490)
T ss_pred HHHHH---------------------------------HhcCCeEEEEeCChHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 65432 125889999999999998899999999999999999999987
Q ss_pred ccCCchh
Q psy12535 169 SGLDFTQ 175 (209)
Q Consensus 169 ~~~~~~~ 175 (209)
....|..
T Consensus 637 ~~~~~~~ 643 (1490)
T TIGR01271 637 KRPDFSS 643 (1490)
T ss_pred cChHHHH
Confidence 5444433
No 48
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.91 E-value=2.3e-25 Score=189.16 Aligned_cols=120 Identities=29% Similarity=0.555 Sum_probs=102.3
Q ss_pred eechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccc
Q psy12535 24 CALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDS 103 (209)
Q Consensus 24 ~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~ 103 (209)
.++.+.+..+|.++++.++..+.+|||||||||+|||||+.+|++|||||||++||+.+...+.+.
T Consensus 115 ~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~-------------- 180 (237)
T cd03252 115 AGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRN-------------- 180 (237)
T ss_pred cCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHH--------------
Confidence 455566778888889888999999999999999999999999999999999999999988887663
Q ss_pred cchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeeccceeecchhhHHhhccCCchhcc
Q psy12535 104 RWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGLDFTQLL 177 (209)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~~~~~~~~~~~ 177 (209)
++... +++|||++||+++.+..+|+|++|++|++++.|+++++..+...|..++
T Consensus 181 -------------------l~~~~-~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~ 234 (237)
T cd03252 181 -------------------MHDIC-AGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAENGLYAYLY 234 (237)
T ss_pred -------------------HHHhc-CCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHhccChHHHHH
Confidence 22222 4789999999999987799999999999999999999887655554443
No 49
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.91 E-value=6.7e-26 Score=213.00 Aligned_cols=108 Identities=35% Similarity=0.572 Sum_probs=96.9
Q ss_pred CCCCCCCcceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhh
Q psy12535 11 GHPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDC 90 (209)
Q Consensus 11 ~~~~~~~~~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~ 90 (209)
..+++.+.++++.+++++++..+|.|++|.+|++|.+||||||||++||||++++|+++|||||||+||+.+.+.+++.+
T Consensus 422 ~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l 501 (529)
T TIGR02857 422 DASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEAL 501 (529)
T ss_pred CCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHH
Confidence 34556777889999999999999999999999999999999999999999999999999999999999999999887743
Q ss_pred hhccccCCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEe
Q psy12535 91 ITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLL 152 (209)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L 152 (209)
. . ..+++|+|+|||+++.+..+|+|++|
T Consensus 502 ~---------------------------------~-~~~~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 502 R---------------------------------A-LAQGRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred H---------------------------------H-hcCCCEEEEEecCHHHHHhCCEEEeC
Confidence 2 1 12578999999999999999999986
No 50
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.91 E-value=6.1e-25 Score=195.60 Aligned_cols=131 Identities=22% Similarity=0.365 Sum_probs=101.0
Q ss_pred cccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhh
Q psy12535 42 GDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALS 121 (209)
Q Consensus 42 g~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (209)
...+.+|||||+|||.||.||+.+|++||.||||+|||...+.++++
T Consensus 148 ~~YPhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~--------------------------------- 194 (316)
T COG0444 148 KSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILD--------------------------------- 194 (316)
T ss_pred hhCCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHH---------------------------------
Confidence 44455999999999999999999999999999999999999888876
Q ss_pred hhhhhc-cccceeeeeeeehheecc-cceEEEeeccceeecchhhHHhhccC-Cchhc-cCCCchhh-------hhhccc
Q psy12535 122 LVRTSF-LKEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQLLASGL-DFTQL-LDAPEEED-------KAENEV 190 (209)
Q Consensus 122 ~~~~~~-~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l~~~~~-~~~~~-~~~~~~~~-------~~~~~~ 190 (209)
++++.. ..+.|+|+||||+..+.. ||||+||..|+|+|.|+.++++.+.. .|++. +....... ......
T Consensus 195 Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iVE~g~~~~i~~~P~HPYT~~Ll~s~P~~~~~l~~ipG~~p~l 274 (316)
T COG0444 195 LLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIVEEGPVEEIFKNPKHPYTRGLLNSLPRLGERLPPIPGSPPSL 274 (316)
T ss_pred HHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEEEeCCHHHHhcCCCChHHHHHHHhCccccCCcCCCCCCCCcc
Confidence 333333 358999999999998875 89999999999999999999998765 34433 22211111 112334
Q ss_pred CCCCCcceecccccc
Q psy12535 191 DDNASGTLLHPRQSS 205 (209)
Q Consensus 191 ~~~~~~~~~~~~~~~ 205 (209)
...+.||.||||-.+
T Consensus 275 ~~~p~GC~F~pRC~~ 289 (316)
T COG0444 275 LNPPKGCRFHPRCPY 289 (316)
T ss_pred cCCCCCCccccccch
Confidence 446678999988544
No 51
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.91 E-value=4.3e-25 Score=190.28 Aligned_cols=104 Identities=33% Similarity=0.450 Sum_probs=84.9
Q ss_pred cceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhhh
Q psy12535 44 KGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLV 123 (209)
Q Consensus 44 ~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (209)
.+++|||||++|++||||++.+|+|+++||||+||||.+...+ +.++..
T Consensus 142 ~PsELSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~-~~LI~~------------------------------ 190 (263)
T COG1127 142 YPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVI-DELIRE------------------------------ 190 (263)
T ss_pred CchhhcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHH-HHHHHH------------------------------
Confidence 3459999999999999999999999999999999999866555 433332
Q ss_pred hhhcc-ccceeeeeeeehheecc-cceEEEeeccceeecchhhHHhhccCCc-hhccCCC
Q psy12535 124 RTSFL-KEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQLLASGLDF-TQLLDAP 180 (209)
Q Consensus 124 ~~~~~-~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l~~~~~~~-~~~~~~~ 180 (209)
+.. -+.|+|+||||++.+.. ||||++|.+|+|++.|+++++.++...+ .+++...
T Consensus 191 --L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el~~sd~P~v~qf~~G~ 248 (263)
T COG1127 191 --LNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELLASDDPWVRQFFNGI 248 (263)
T ss_pred --HHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHHHHhCCCHHHHHHhcCC
Confidence 222 27899999999998765 7999999999999999999999865543 5555443
No 52
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.91 E-value=2.1e-25 Score=194.48 Aligned_cols=94 Identities=32% Similarity=0.481 Sum_probs=82.1
Q ss_pred ccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhh
Q psy12535 43 DKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSL 122 (209)
Q Consensus 43 ~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (209)
+...+||||||||+.|||||+.+|+|||||||||+||..++-.+++.
T Consensus 134 r~~~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~l--------------------------------- 180 (258)
T COG1120 134 RPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLEL--------------------------------- 180 (258)
T ss_pred CcccccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHH---------------------------------
Confidence 34469999999999999999999999999999999999988888773
Q ss_pred hhhhc-cccceeeeeeeehhee-cccceEEEeeccceeecchhhHHhhc
Q psy12535 123 VRTSF-LKEKTVMLITHQIQYL-THVDHVMLLEKGSVEAFGTTTQLLAS 169 (209)
Q Consensus 123 ~~~~~-~~~~TiIvitH~l~~l-~~~DrV~~L~~G~i~~~G~~~~l~~~ 169 (209)
+++.. .+|+|||+|+||++.+ ++||++++|++|+++++|++++++..
T Consensus 181 l~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evlT~ 229 (258)
T COG1120 181 LRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVLTE 229 (258)
T ss_pred HHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhcCH
Confidence 33333 3589999999999986 46899999999999999999988754
No 53
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.90 E-value=1.6e-25 Score=210.35 Aligned_cols=97 Identities=37% Similarity=0.603 Sum_probs=87.7
Q ss_pred CCCCCCCCcceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhh
Q psy12535 10 PGHPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFED 89 (209)
Q Consensus 10 ~~~~~~~~~~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~ 89 (209)
+..+++++.++++.|++++++..+|+|++|.+|++|.+||||||||++||||++++|+|||||||||+||+++++.+.+.
T Consensus 433 ~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~ 512 (529)
T TIGR02868 433 PDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLED 512 (529)
T ss_pred CCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 45677888899999999999999999999999999999999999999999999999999999999999999999988775
Q ss_pred hhhccccCCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeeh
Q psy12535 90 CITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQI 140 (209)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l 140 (209)
+.. ..+++|+|+|||++
T Consensus 513 l~~----------------------------------~~~~~TvIiItHrl 529 (529)
T TIGR02868 513 LLA----------------------------------ALSGKTVVVITHHL 529 (529)
T ss_pred HHH----------------------------------hcCCCEEEEEecCC
Confidence 431 23578999999984
No 54
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.90 E-value=4.9e-25 Score=186.86 Aligned_cols=120 Identities=30% Similarity=0.605 Sum_probs=101.7
Q ss_pred eeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCC
Q psy12535 21 VKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPR 100 (209)
Q Consensus 21 ~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~ 100 (209)
++.+++.+.+..+|.|+++.+...+.+|||||||||+|||||+.+|++|||||||++||+.+...+.+.
T Consensus 111 ~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~----------- 179 (236)
T cd03253 111 AKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAA----------- 179 (236)
T ss_pred HHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH-----------
Confidence 344566677788888999999999999999999999999999999999999999999999988877663
Q ss_pred ccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeeccceeecchhhHHhhccCCch
Q psy12535 101 FDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGLDFT 174 (209)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~~~~~~~~ 174 (209)
+..... ++|||++||+++.+..||++++|++|++++.|+.+++......+.
T Consensus 180 ----------------------l~~~~~-~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~~~~~~~ 230 (236)
T cd03253 180 ----------------------LRDVSK-GRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAKGGLYA 230 (236)
T ss_pred ----------------------HHHhcC-CCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhhcccHHH
Confidence 223233 789999999999987799999999999999999988876543333
No 55
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.90 E-value=2.2e-24 Score=182.61 Aligned_cols=115 Identities=34% Similarity=0.583 Sum_probs=99.2
Q ss_pred eechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccc
Q psy12535 24 CALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDS 103 (209)
Q Consensus 24 ~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~ 103 (209)
+++.+.+..+|.|+++.++..+.+||||||||++|||||+.+|++|||||||++||+.+...+.+.
T Consensus 115 ~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~-------------- 180 (234)
T cd03251 115 ANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAA-------------- 180 (234)
T ss_pred cCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHH--------------
Confidence 455667778888899999999999999999999999999999999999999999999988877663
Q ss_pred cchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeeccceeecchhhHHhhccCC
Q psy12535 104 RWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGLD 172 (209)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~~~~~~ 172 (209)
+++.. +++|||++||+++.+..||+|++|++|++++.|+++++......
T Consensus 181 -------------------l~~~~-~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~ 229 (234)
T cd03251 181 -------------------LERLM-KNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQGGV 229 (234)
T ss_pred -------------------HHHhc-CCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHHcCcc
Confidence 22222 47899999999999877999999999999999999988765443
No 56
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.90 E-value=7.6e-25 Score=183.03 Aligned_cols=96 Identities=27% Similarity=0.511 Sum_probs=84.9
Q ss_pred ccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhh
Q psy12535 43 DKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSL 122 (209)
Q Consensus 43 ~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (209)
..+..|||||+||++|||||+.+|+++|+|||||+|||+....++. .
T Consensus 148 ~YP~~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLk---------------------------------v 194 (256)
T COG4598 148 AYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLK---------------------------------V 194 (256)
T ss_pred cCccccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHH---------------------------------H
Confidence 4456999999999999999999999999999999999976555543 5
Q ss_pred hhhhccccceeeeeeeehheecc-cceEEEeeccceeecchhhHHhhccC
Q psy12535 123 VRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQLLASGL 171 (209)
Q Consensus 123 ~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l~~~~~ 171 (209)
++.+..+|+|.++|||.+.+.+. +.+|++|++|.|.++|+|++++.+..
T Consensus 195 ~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~iEE~G~P~qvf~nP~ 244 (256)
T COG4598 195 MQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEEEGPPEQVFGNPQ 244 (256)
T ss_pred HHHHHHhCCeEEEEeeehhHHHhhhhheEEeecceecccCChHHHhcCCC
Confidence 56667789999999999999987 59999999999999999999997753
No 57
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.90 E-value=4.5e-25 Score=190.71 Aligned_cols=97 Identities=30% Similarity=0.475 Sum_probs=78.9
Q ss_pred CCcceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccc
Q psy12535 16 NSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLH 95 (209)
Q Consensus 16 ~~~~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~ 95 (209)
+..++++.++|..+-+..|. +|||||||||+|||||+.+|+|||||||+++||..++..+.+.+...
T Consensus 110 ~a~~~L~~VgL~~~~~~~P~-----------qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~l-- 176 (248)
T COG1116 110 RAKELLELVGLAGFEDKYPH-----------QLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRL-- 176 (248)
T ss_pred HHHHHHHHcCCcchhhcCcc-----------ccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHH--
Confidence 34445555666666666664 99999999999999999999999999999999999999987754322
Q ss_pred cCCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheec-ccceEEEeecc
Q psy12535 96 TGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLT-HVDHVMLLEKG 155 (209)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~-~~DrV~~L~~G 155 (209)
+...++|||+||||++++- .+|||++|.++
T Consensus 177 ------------------------------w~~~~~TvllVTHdi~EAv~LsdRivvl~~~ 207 (248)
T COG1116 177 ------------------------------WEETRKTVLLVTHDVDEAVYLADRVVVLSNR 207 (248)
T ss_pred ------------------------------HHhhCCEEEEEeCCHHHHHhhhCEEEEecCC
Confidence 2335789999999998754 58999999984
No 58
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.90 E-value=6.3e-25 Score=197.95 Aligned_cols=115 Identities=30% Similarity=0.497 Sum_probs=92.6
Q ss_pred CCCCcceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhc
Q psy12535 14 DPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITG 93 (209)
Q Consensus 14 ~~~~~~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~ 93 (209)
+.++.++++..++...+++.| .+|||||||||||||||+++|+++|||||+|+||++.+..+...+...
T Consensus 111 ~~rV~eva~~L~l~~lL~r~P-----------~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~l 179 (338)
T COG3839 111 DKRVKEVAKLLGLEHLLNRKP-----------LQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKL 179 (338)
T ss_pred HHHHHHHHHHcCChhHHhcCc-----------ccCChhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHH
Confidence 344555666666666666655 499999999999999999999999999999999999888876653221
Q ss_pred cccCCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehhe-ecccceEEEeeccceeecchhhHHhhccC
Q psy12535 94 LHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQY-LTHVDHVMLLEKGSVEAFGTTTQLLASGL 171 (209)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~-l~~~DrV~~L~~G~i~~~G~~~~l~~~~~ 171 (209)
+ ..-+.|+|+||||... +..+|||++|++|+|.+.|++.++..+..
T Consensus 180 -h-------------------------------~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~P~ 226 (338)
T COG3839 180 -H-------------------------------ERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERPA 226 (338)
T ss_pred -H-------------------------------HhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhCcc
Confidence 1 1237899999998766 56789999999999999999999987643
No 59
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.90 E-value=6.9e-25 Score=198.23 Aligned_cols=101 Identities=27% Similarity=0.430 Sum_probs=86.0
Q ss_pred CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535 36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG 115 (209)
Q Consensus 36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (209)
|+.......+.+|||||||||+|||||+.+|++||||||||+||+.+...+++.
T Consensus 129 gL~~~~~~~~~~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~l-------------------------- 182 (343)
T TIGR02314 129 GLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILEL-------------------------- 182 (343)
T ss_pred CCchhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHH--------------------------
Confidence 344445566779999999999999999999999999999999999998888663
Q ss_pred ccchhhhhhhhccc-cceeeeeeeehheecc-cceEEEeeccceeecchhhHHhhc
Q psy12535 116 VRGALSLVRTSFLK-EKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQLLAS 169 (209)
Q Consensus 116 ~~~~~~~~~~~~~~-~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l~~~ 169 (209)
+++...+ +.|||+|||+++.+.. ||+|++|++|+|++.|++++++.+
T Consensus 183 -------L~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~~~ 231 (343)
T TIGR02314 183 -------LKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFSH 231 (343)
T ss_pred -------HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHcC
Confidence 3333333 7899999999999864 899999999999999999999764
No 60
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.90 E-value=7.7e-25 Score=187.78 Aligned_cols=83 Identities=31% Similarity=0.541 Sum_probs=73.5
Q ss_pred ccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhh
Q psy12535 43 DKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSL 122 (209)
Q Consensus 43 ~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (209)
.++.+|||||||||||||||+++|+|+|.||||++||..+.+.+++.
T Consensus 138 ~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~l--------------------------------- 184 (226)
T COG1136 138 KKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLEL--------------------------------- 184 (226)
T ss_pred CCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHH---------------------------------
Confidence 45679999999999999999999999999999999999999999773
Q ss_pred hhhhcc-ccceeeeeeeehheecccceEEEeecccee
Q psy12535 123 VRTSFL-KEKTVMLITHQIQYLTHVDHVMLLEKGSVE 158 (209)
Q Consensus 123 ~~~~~~-~~~TiIvitH~l~~l~~~DrV~~L~~G~i~ 158 (209)
+..... .|+|||+||||......|||++.|++|++.
T Consensus 185 l~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~~ 221 (226)
T COG1136 185 LRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIE 221 (226)
T ss_pred HHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCeee
Confidence 333333 488999999999999999999999999843
No 61
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.90 E-value=1.6e-24 Score=182.86 Aligned_cols=115 Identities=28% Similarity=0.517 Sum_probs=98.9
Q ss_pred eeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCC
Q psy12535 21 VKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPR 100 (209)
Q Consensus 21 ~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~ 100 (209)
++.+++.+++..+|.|+++.++..+.+|||||||||+|||||+.+|++|||||||++||+.+...+++.+
T Consensus 113 ~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l---------- 182 (229)
T cd03254 113 AKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEAL---------- 182 (229)
T ss_pred HHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHH----------
Confidence 3445666778888889999999999999999999999999999999999999999999999888776632
Q ss_pred ccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeeccceeecchhhHHhhc
Q psy12535 101 FDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLAS 169 (209)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~~~ 169 (209)
.... +++|||++||+++.+..||+|++|++|++++.|+.+++...
T Consensus 183 -----------------------~~~~-~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~~ 227 (229)
T cd03254 183 -----------------------EKLM-KGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAK 227 (229)
T ss_pred -----------------------HHhc-CCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHHhh
Confidence 2222 47899999999998877999999999999999998887654
No 62
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.90 E-value=7.6e-25 Score=207.90 Aligned_cols=112 Identities=21% Similarity=0.309 Sum_probs=96.4
Q ss_pred CCCCCCcceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhh
Q psy12535 12 HPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCI 91 (209)
Q Consensus 12 ~~~~~~~~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~ 91 (209)
.+++...++++.+++++++..+|.||+|. .+|||||||||+||||++++|+|||||||||+||+.+.+.+.+.++
T Consensus 440 ~~~~~~~~~~~~~~l~~~~~~lp~g~~t~-----~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~ 514 (555)
T TIGR01194 440 ASLDNAQQYLQRLEIADKVKIEDGGFSTT-----TALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELL 514 (555)
T ss_pred hhHHHHHHHHHHcCCchhhcccccccCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHH
Confidence 34455667888889999999999999985 6899999999999999999999999999999999999888876432
Q ss_pred hccccCCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeeccceeec
Q psy12535 92 TGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAF 160 (209)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~ 160 (209)
.. ...+++|+|+|||+++.+..+|+|++|++|++++.
T Consensus 515 ~~--------------------------------~~~~~~tiiiisH~~~~~~~~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 515 PD--------------------------------LKRQGKTIIIISHDDQYFELADQIIKLAAGCIVKD 551 (555)
T ss_pred HH--------------------------------HHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEEe
Confidence 11 12357899999999999889999999999999864
No 63
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.90 E-value=2.8e-24 Score=182.67 Aligned_cols=114 Identities=34% Similarity=0.587 Sum_probs=98.4
Q ss_pred eeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCcc
Q psy12535 23 VCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFD 102 (209)
Q Consensus 23 ~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~ 102 (209)
.+++.+++..+|.|+++.++..+.+||||||||++|||||+.+|++|||||||++||+.+...+.+.
T Consensus 115 ~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~------------- 181 (238)
T cd03249 115 KANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEA------------- 181 (238)
T ss_pred HcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHH-------------
Confidence 3455666778888899999999999999999999999999999999999999999999988777663
Q ss_pred ccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeeccceeecchhhHHhhcc
Q psy12535 103 SRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASG 170 (209)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~~~~ 170 (209)
++... +++|||++||+++.+..||+|++|++|++++.|+.+++....
T Consensus 182 --------------------l~~~~-~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~ 228 (238)
T cd03249 182 --------------------LDRAM-KGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQK 228 (238)
T ss_pred --------------------HHHhc-CCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhhcC
Confidence 22333 578999999999988889999999999999999988887544
No 64
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=3e-24 Score=182.38 Aligned_cols=101 Identities=28% Similarity=0.357 Sum_probs=84.6
Q ss_pred CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535 36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG 115 (209)
Q Consensus 36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (209)
|+.......+.+|||||||||+|||||+.+|+||||||||++||+.+...+++.
T Consensus 125 ~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~-------------------------- 178 (235)
T cd03261 125 GLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDL-------------------------- 178 (235)
T ss_pred CCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHH--------------------------
Confidence 333444566779999999999999999999999999999999999988887663
Q ss_pred ccchhhhhhhhcc-ccceeeeeeeehheecc-cceEEEeeccceeecchhhHHhhc
Q psy12535 116 VRGALSLVRTSFL-KEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQLLAS 169 (209)
Q Consensus 116 ~~~~~~~~~~~~~-~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l~~~ 169 (209)
++.... .++|||+|||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 179 -------l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 227 (235)
T cd03261 179 -------IRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRAS 227 (235)
T ss_pred -------HHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHcCC
Confidence 223233 37899999999998764 899999999999999999888654
No 65
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.89 E-value=1.7e-24 Score=180.79 Aligned_cols=113 Identities=28% Similarity=0.468 Sum_probs=94.2
Q ss_pred CCCcceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhcc
Q psy12535 15 PNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGL 94 (209)
Q Consensus 15 ~~~~~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~ 94 (209)
++++.++...|+..+..++|. +||||||||+||||+|+++-+||+||||+|+|||..+..+...+...
T Consensus 108 ~~v~~aa~~vGl~~~~~RLP~-----------~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l- 175 (231)
T COG3840 108 EKVEAAAAQVGLAGFLKRLPG-----------ELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQL- 175 (231)
T ss_pred HHHHHHHHHhChhhHhhhCcc-----------ccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHH-
Confidence 344556666778888888886 99999999999999999999999999999999998887776632211
Q ss_pred ccCCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecc-cceEEEeeccceeecchhhHHhhcc
Q psy12535 95 HTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQLLASG 170 (209)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l~~~~ 170 (209)
+ ..++.|+++|||.++.+.. +|+++++++|+|.+.|+.++++...
T Consensus 176 ~-------------------------------~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~~ 221 (231)
T COG3840 176 C-------------------------------DERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSGK 221 (231)
T ss_pred H-------------------------------HhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhccC
Confidence 1 2368899999999998765 7999999999999999999987643
No 66
>PTZ00243 ABC transporter; Provisional
Probab=99.89 E-value=1.1e-24 Score=227.22 Aligned_cols=122 Identities=49% Similarity=0.767 Sum_probs=109.8
Q ss_pred CCCcceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhcc
Q psy12535 15 PNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGL 94 (209)
Q Consensus 15 ~~~~~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~ 94 (209)
+++.++++.|++.++++.+|.|++|.+|+++.+|||||||||+|||||+.+|+|||||||||+||+.+.+.+++.++..
T Consensus 750 ~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~- 828 (1560)
T PTZ00243 750 ARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLG- 828 (1560)
T ss_pred HHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHH-
Confidence 3456677889999999999999999999999999999999999999999999999999999999999888888765321
Q ss_pred ccCCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeeccceeecchhhHHhhc
Q psy12535 95 HTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLAS 169 (209)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~~~ 169 (209)
..+++|+|+|||+++.+..+|+|++|++|++++.|+++++.++
T Consensus 829 --------------------------------~~~~~TvIlvTH~~~~~~~ad~ii~l~~G~i~~~G~~~~l~~~ 871 (1560)
T PTZ00243 829 --------------------------------ALAGKTRVLATHQVHVVPRADYVVALGDGRVEFSGSSADFMRT 871 (1560)
T ss_pred --------------------------------hhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEecCHHHHHhC
Confidence 1247899999999999988999999999999999999998764
No 67
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.89 E-value=3.6e-24 Score=184.88 Aligned_cols=117 Identities=27% Similarity=0.459 Sum_probs=100.6
Q ss_pred eeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCC
Q psy12535 20 VVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVP 99 (209)
Q Consensus 20 ~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~ 99 (209)
+++.+++.+.+..+|.|+++.+++.+..||+||+||++|||||+.+|++|||||||++||+.+...+++.
T Consensus 129 ~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~---------- 198 (257)
T cd03288 129 ALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKV---------- 198 (257)
T ss_pred HHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHH----------
Confidence 3344566777888898999999999999999999999999999999999999999999999887766553
Q ss_pred CccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeeccceeecchhhHHhhcc
Q psy12535 100 RFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASG 170 (209)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~~~~ 170 (209)
++.. ..++|||++||+++.+..+|+|++|++|++++.|+++++....
T Consensus 199 -----------------------l~~~-~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~ 245 (257)
T cd03288 199 -----------------------VMTA-FADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQE 245 (257)
T ss_pred -----------------------HHHh-cCCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHHhcc
Confidence 2222 2478999999999998889999999999999999999987653
No 68
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.89 E-value=4.1e-24 Score=185.96 Aligned_cols=94 Identities=32% Similarity=0.522 Sum_probs=82.0
Q ss_pred cccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhh
Q psy12535 42 GDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALS 121 (209)
Q Consensus 42 g~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (209)
.+...+|||||+|||.|||||+.+|++|||||||+|+|+.++..+++
T Consensus 134 ~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~--------------------------------- 180 (254)
T COG1121 134 DRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYD--------------------------------- 180 (254)
T ss_pred CCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHH---------------------------------
Confidence 34556999999999999999999999999999999999998888876
Q ss_pred hhhhhccccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhc
Q psy12535 122 LVRTSFLKEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLAS 169 (209)
Q Consensus 122 ~~~~~~~~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~ 169 (209)
+++++..+|+||++||||++.+. .+|+|+.| |+++...|+++++...
T Consensus 181 lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~L-n~~~~~~G~~~~~~~~ 228 (254)
T COG1121 181 LLKELRQEGKTVLMVTHDLGLVMAYFDRVICL-NRHLIASGPPEEVLTE 228 (254)
T ss_pred HHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEE-cCeeEeccChhhccCH
Confidence 44555556999999999999876 58999999 5789999999998754
No 69
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=5.7e-24 Score=191.06 Aligned_cols=102 Identities=26% Similarity=0.420 Sum_probs=88.5
Q ss_pred CCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccc
Q psy12535 35 SGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSAL 114 (209)
Q Consensus 35 ~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (209)
.+.++.+++++.+|||||||||+|||||+.+|+||||||||++||+.+...+.+. +
T Consensus 213 ~~l~~~~~~~~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~-i----------------------- 268 (329)
T PRK14257 213 DEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEEL-I----------------------- 268 (329)
T ss_pred chhhhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHH-H-----------------------
Confidence 3456778999999999999999999999999999999999999999988876552 2
Q ss_pred cccchhhhhhhhccccceeeeeeeehheecc-cceEEEeeccceeecchhhHHhhcc
Q psy12535 115 GVRGALSLVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQLLASG 170 (209)
Q Consensus 115 ~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l~~~~ 170 (209)
+.. .+++|+|+|||+++.+.. ||+|++|++|+|++.|++++++.+.
T Consensus 269 ---------~~l-~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~~~~l~~~~ 315 (329)
T PRK14257 269 ---------LEL-KKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETKTIFIHP 315 (329)
T ss_pred ---------HHH-hcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcCC
Confidence 222 246899999999999876 8999999999999999999997643
No 70
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.89 E-value=7.7e-25 Score=199.35 Aligned_cols=102 Identities=25% Similarity=0.415 Sum_probs=87.1
Q ss_pred CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535 36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG 115 (209)
Q Consensus 36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (209)
|++...++.+.+|||||||||+|||||+.+|+||||||||++||+.++..+++.+..
T Consensus 118 gL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~~r~~l~~~l~~----------------------- 174 (363)
T TIGR01186 118 GLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKK----------------------- 174 (363)
T ss_pred CCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH-----------------------
Confidence 445556677789999999999999999999999999999999999999888774432
Q ss_pred ccchhhhhhhhc-cccceeeeeeeehhee-cccceEEEeeccceeecchhhHHhhcc
Q psy12535 116 VRGALSLVRTSF-LKEKTVMLITHQIQYL-THVDHVMLLEKGSVEAFGTTTQLLASG 170 (209)
Q Consensus 116 ~~~~~~~~~~~~-~~~~TiIvitH~l~~l-~~~DrV~~L~~G~i~~~G~~~~l~~~~ 170 (209)
.. ..++|||+|||+++.+ ..+|+|++|++|++++.|+++++..+.
T Consensus 175 ----------l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~p 221 (363)
T TIGR01186 175 ----------LQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNP 221 (363)
T ss_pred ----------HHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhCc
Confidence 22 2378999999999986 458999999999999999999987653
No 71
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.89 E-value=1.3e-24 Score=196.79 Aligned_cols=112 Identities=29% Similarity=0.444 Sum_probs=90.5
Q ss_pred CCcceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccc
Q psy12535 16 NSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLH 95 (209)
Q Consensus 16 ~~~~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~ 95 (209)
++.++++..++.++-.+.| .+|||||||||||||||+.+|+|||||||+|+||.+.+.++..++..
T Consensus 116 rv~e~L~lV~L~~~~~R~p-----------~qLSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~--- 181 (352)
T COG3842 116 RVEEALELVGLEGFADRKP-----------HQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKE--- 181 (352)
T ss_pred HHHHHHHHcCchhhhhhCh-----------hhhChHHHHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHH---
Confidence 3444555555555555544 59999999999999999999999999999999999988888665332
Q ss_pred cCCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehhe-ecccceEEEeeccceeecchhhHHhhcc
Q psy12535 96 TGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQY-LTHVDHVMLLEKGSVEAFGTTTQLLASG 170 (209)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~-l~~~DrV~~L~~G~i~~~G~~~~l~~~~ 170 (209)
+. ..-|.|.|+||||.+. +..+|||++|++|+|.+.|+++++....
T Consensus 182 --------------------------lq---~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~P 228 (352)
T COG3842 182 --------------------------LQ---RELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYERP 228 (352)
T ss_pred --------------------------HH---HhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhCc
Confidence 11 2248999999998876 5678999999999999999999998654
No 72
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.89 E-value=3.3e-24 Score=190.20 Aligned_cols=109 Identities=30% Similarity=0.450 Sum_probs=88.5
Q ss_pred CcceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhcccc
Q psy12535 17 SRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHT 96 (209)
Q Consensus 17 ~~~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~ 96 (209)
..+.++.|.|...-++.| .+|||||||||||||||+.+|++||||||+++||.+..+.+...+.
T Consensus 118 v~elL~lvqL~~la~ryP-----------~QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr----- 181 (345)
T COG1118 118 VEELLRLVQLEGLADRYP-----------AQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLR----- 181 (345)
T ss_pred HHHHHHHhcccchhhcCc-----------hhcChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHH-----
Confidence 334455566655555555 4999999999999999999999999999999999988877755432
Q ss_pred CCCCccccchhhhhcccccccchhhhhhhhc-cccceeeeeeeehhee-cccceEEEeeccceeecchhhHHhhc
Q psy12535 97 GVPRFDSRWGRSFFGSALGVRGALSLVRTSF-LKEKTVMLITHQIQYL-THVDHVMLLEKGSVEAFGTTTQLLAS 169 (209)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~TiIvitH~l~~l-~~~DrV~~L~~G~i~~~G~~~~l~~~ 169 (209)
+.. +-+.|+|+||||.+++ +.+|||++|++|+|.+.|+++++...
T Consensus 182 ----------------------------~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev~~~ 228 (345)
T COG1118 182 ----------------------------KLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYDH 228 (345)
T ss_pred ----------------------------HHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHHhcC
Confidence 222 2378999999999876 56899999999999999999999764
No 73
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.89 E-value=5.5e-24 Score=178.68 Aligned_cols=109 Identities=33% Similarity=0.563 Sum_probs=92.1
Q ss_pred ceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCC
Q psy12535 19 RVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGV 98 (209)
Q Consensus 19 ~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~ 98 (209)
++++.+++.+.+...|.|++|.+.....+||||||||++||||++.+|++|||||||++||+.+...+++.+
T Consensus 112 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l-------- 183 (220)
T cd03245 112 RAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERL-------- 183 (220)
T ss_pred HHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHH--------
Confidence 344555676777888889999998889999999999999999999999999999999999999888886632
Q ss_pred CCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeeccceeecc
Q psy12535 99 PRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFG 161 (209)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G 161 (209)
+.... ++|||++||+++.+..+|+|++|++|++++.|
T Consensus 184 -------------------------~~~~~-~~tii~~sH~~~~~~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 184 -------------------------RQLLG-DKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220 (220)
T ss_pred -------------------------HHhcC-CCEEEEEeCCHHHHHhCCEEEEEeCCeEeecC
Confidence 22222 47999999999987778999999999997654
No 74
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=3e-24 Score=194.74 Aligned_cols=102 Identities=27% Similarity=0.442 Sum_probs=85.8
Q ss_pred CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535 36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG 115 (209)
Q Consensus 36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (209)
|+.......+.+|||||||||+|||||+.+|+|||||||||+||+.++..+.+.+
T Consensus 123 gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l------------------------- 177 (356)
T PRK11650 123 ELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEI------------------------- 177 (356)
T ss_pred CChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH-------------------------
Confidence 3444556666799999999999999999999999999999999999888887643
Q ss_pred ccchhhhhhhhcc-ccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhcc
Q psy12535 116 VRGALSLVRTSFL-KEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLASG 170 (209)
Q Consensus 116 ~~~~~~~~~~~~~-~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~~ 170 (209)
+.... .+.|+|+|||+++.+. .+|+|++|++|++++.|+++++..+.
T Consensus 178 --------~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~p 226 (356)
T PRK11650 178 --------QRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEKP 226 (356)
T ss_pred --------HHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhCC
Confidence 22222 3789999999998765 58999999999999999999997653
No 75
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.89 E-value=3.8e-24 Score=194.63 Aligned_cols=102 Identities=30% Similarity=0.443 Sum_probs=86.2
Q ss_pred CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535 36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG 115 (209)
Q Consensus 36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (209)
|++....+.+.+|||||||||+|||||+.+|++||||||||+||+..+..+.+.+
T Consensus 126 gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l------------------------- 180 (362)
T TIGR03258 126 GLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEI------------------------- 180 (362)
T ss_pred CCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHH-------------------------
Confidence 3444556667799999999999999999999999999999999999888886643
Q ss_pred ccchhhhhhhhccc--cceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhcc
Q psy12535 116 VRGALSLVRTSFLK--EKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLASG 170 (209)
Q Consensus 116 ~~~~~~~~~~~~~~--~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~~ 170 (209)
+....+ +.|+|+|||+++.+. .+|+|++|++|++++.|+++++....
T Consensus 181 --------~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~~~p 230 (362)
T TIGR03258 181 --------AALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYDAP 230 (362)
T ss_pred --------HHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 222233 789999999999865 58999999999999999999998653
No 76
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.88 E-value=7.9e-24 Score=199.81 Aligned_cols=102 Identities=24% Similarity=0.397 Sum_probs=88.2
Q ss_pred cccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhh
Q psy12535 42 GDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALS 121 (209)
Q Consensus 42 g~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (209)
...+.+||||||||+.||+||+.+|++||+||||++||+.++.++.+.
T Consensus 149 ~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~l-------------------------------- 196 (539)
T COG1123 149 DRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDL-------------------------------- 196 (539)
T ss_pred ccCCcccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHH--------------------------------
Confidence 446679999999999999999999999999999999999999888773
Q ss_pred hhhhhc-cccceeeeeeeehheecc-cceEEEeeccceeecchhhHHhhccC-Cchhc
Q psy12535 122 LVRTSF-LKEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQLLASGL-DFTQL 176 (209)
Q Consensus 122 ~~~~~~-~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l~~~~~-~~~~~ 176 (209)
++.+. ..|.++|+||||+..++. ||||+||++|++++.|++++++++.. .|+..
T Consensus 197 -lk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE~G~~~~i~~~p~hpYT~~ 253 (539)
T COG1123 197 -LKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVETGPTEEILSNPQHPYTRG 253 (539)
T ss_pred -HHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEEecCHHHHHhccCCcccHH
Confidence 33333 358999999999999876 89999999999999999999998765 35433
No 77
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.88 E-value=1.3e-23 Score=178.14 Aligned_cols=100 Identities=29% Similarity=0.416 Sum_probs=85.8
Q ss_pred CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535 36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG 115 (209)
Q Consensus 36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (209)
|++...+..+.+||||||||++|||||+.+|++|||||||++||+.+...+++.
T Consensus 132 ~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~-------------------------- 185 (236)
T cd03219 132 GLADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAEL-------------------------- 185 (236)
T ss_pred CccchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH--------------------------
Confidence 455566778889999999999999999999999999999999999988887663
Q ss_pred ccchhhhhhhhccccceeeeeeeehheecc-cceEEEeeccceeecchhhHHhh
Q psy12535 116 VRGALSLVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQLLA 168 (209)
Q Consensus 116 ~~~~~~~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l~~ 168 (209)
+......++|||++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 186 -------l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 232 (236)
T cd03219 186 -------IRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVRN 232 (236)
T ss_pred -------HHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCHHHhcc
Confidence 22223357899999999999865 89999999999999999988754
No 78
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.88 E-value=1.3e-23 Score=178.48 Aligned_cols=99 Identities=23% Similarity=0.391 Sum_probs=84.1
Q ss_pred CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535 36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG 115 (209)
Q Consensus 36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (209)
|+...+...+.+|||||||||+|||||+.+|+||||||||++||+.+...+.+.
T Consensus 133 ~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~-------------------------- 186 (241)
T cd03256 133 GLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDL-------------------------- 186 (241)
T ss_pred CChhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHH--------------------------
Confidence 344455667789999999999999999999999999999999999988887663
Q ss_pred ccchhhhhhhhcc-ccceeeeeeeehheec-ccceEEEeeccceeecchhhHHh
Q psy12535 116 VRGALSLVRTSFL-KEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLL 167 (209)
Q Consensus 116 ~~~~~~~~~~~~~-~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~ 167 (209)
++.... .++|||++||+++.+. .+|+|++|++|++++.|+++++.
T Consensus 187 -------l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 233 (241)
T cd03256 187 -------LKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPAELT 233 (241)
T ss_pred -------HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCHHHhh
Confidence 222222 3789999999999987 58999999999999999998864
No 79
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.88 E-value=1.3e-23 Score=198.25 Aligned_cols=104 Identities=25% Similarity=0.415 Sum_probs=88.5
Q ss_pred eecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccch
Q psy12535 40 LVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGA 119 (209)
Q Consensus 40 ~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (209)
.+.+++.+||||||||++|||||+.+|+++|+|||||+||+..+.++.+.
T Consensus 422 ~l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnL------------------------------ 471 (539)
T COG1123 422 FLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNL------------------------------ 471 (539)
T ss_pred HHhcCchhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHH------------------------------
Confidence 45566679999999999999999999999999999999999998888773
Q ss_pred hhhhhhhcc-ccceeeeeeeehheecc-cceEEEeeccceeecchhhHHhhccC-Cchhc
Q psy12535 120 LSLVRTSFL-KEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQLLASGL-DFTQL 176 (209)
Q Consensus 120 ~~~~~~~~~-~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l~~~~~-~~~~~ 176 (209)
++++.. -|.|.|+||||+..++. ||||++|++|+|++.|+.++++++.. .|++.
T Consensus 472 ---l~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~iVE~G~~~~v~~~p~h~Ytr~ 528 (539)
T COG1123 472 ---LKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEEGPTEKVFENPQHPYTRK 528 (539)
T ss_pred ---HHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCeEEEeCCHHHHhcCCCChHHHH
Confidence 223222 38899999999999986 89999999999999999999987643 45443
No 80
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=2.5e-24 Score=195.02 Aligned_cols=101 Identities=27% Similarity=0.379 Sum_probs=85.2
Q ss_pred CceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccc
Q psy12535 37 DRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGV 116 (209)
Q Consensus 37 ~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (209)
+..+....+.+|||||||||+|||||+.+|+|||||||||+||+..+..+.+.+.
T Consensus 126 l~~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~------------------------- 180 (351)
T PRK11432 126 LAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIR------------------------- 180 (351)
T ss_pred CchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHH-------------------------
Confidence 3344556677999999999999999999999999999999999998888766432
Q ss_pred cchhhhhhhhcc-ccceeeeeeeehhee-cccceEEEeeccceeecchhhHHhhcc
Q psy12535 117 RGALSLVRTSFL-KEKTVMLITHQIQYL-THVDHVMLLEKGSVEAFGTTTQLLASG 170 (209)
Q Consensus 117 ~~~~~~~~~~~~-~~~TiIvitH~l~~l-~~~DrV~~L~~G~i~~~G~~~~l~~~~ 170 (209)
.... .+.|+|+|||+++.+ ..+|+|++|++|+|++.|+++++....
T Consensus 181 --------~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~p 228 (351)
T PRK11432 181 --------ELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQP 228 (351)
T ss_pred --------HHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence 2222 378999999999986 458999999999999999999997653
No 81
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=1.4e-23 Score=188.22 Aligned_cols=98 Identities=20% Similarity=0.356 Sum_probs=85.4
Q ss_pred eecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccch
Q psy12535 40 LVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGA 119 (209)
Q Consensus 40 ~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (209)
.++..+.+|||||+|||+|||||+.+|+|||+||||++||+.++..+++.
T Consensus 146 ~l~~~p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~l------------------------------ 195 (326)
T PRK11022 146 RLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIEL------------------------------ 195 (326)
T ss_pred HHhCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHH------------------------------
Confidence 45667889999999999999999999999999999999999988888663
Q ss_pred hhhhhhhcc-ccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhcc
Q psy12535 120 LSLVRTSFL-KEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLASG 170 (209)
Q Consensus 120 ~~~~~~~~~-~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~~ 170 (209)
+++... .+.|+|+|||+++.+. .+|+|++|.+|+|++.|++++++.+.
T Consensus 196 ---L~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive~g~~~~~~~~p 245 (326)
T PRK11022 196 ---LLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGKAHDIFRAP 245 (326)
T ss_pred ---HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHhhCC
Confidence 333332 4789999999999985 58999999999999999999998754
No 82
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.88 E-value=1.1e-23 Score=177.03 Aligned_cols=109 Identities=32% Similarity=0.547 Sum_probs=94.2
Q ss_pred eeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCC
Q psy12535 20 VVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVP 99 (209)
Q Consensus 20 ~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~ 99 (209)
+++..++.+++..+|.|+++.++..+..||+||+||++|||||+.+|+++||||||++||+.+...+.+.+
T Consensus 112 ~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l--------- 182 (221)
T cd03244 112 ALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTI--------- 182 (221)
T ss_pred HHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHH---------
Confidence 44455677788888999999999999999999999999999999999999999999999999888776632
Q ss_pred CccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeeccceeecch
Q psy12535 100 RFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGT 162 (209)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~ 162 (209)
+... ++.|||++||+++.+..+|++++|++|++++.|+
T Consensus 183 ------------------------~~~~-~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 183 ------------------------REAF-KDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220 (221)
T ss_pred ------------------------HHhc-CCCEEEEEeCCHHHHhhCCEEEEEECCeEEecCC
Confidence 2222 3579999999999988899999999999998775
No 83
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=3e-24 Score=190.83 Aligned_cols=97 Identities=24% Similarity=0.417 Sum_probs=83.5
Q ss_pred eecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccch
Q psy12535 40 LVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGA 119 (209)
Q Consensus 40 ~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (209)
.....+.+|||||||||+|||||+.+|+||||||||++||+.....+.+.
T Consensus 158 ~~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~------------------------------ 207 (305)
T PRK13651 158 YLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEI------------------------------ 207 (305)
T ss_pred hhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHH------------------------------
Confidence 45667789999999999999999999999999999999999888777663
Q ss_pred hhhhhhhccccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhc
Q psy12535 120 LSLVRTSFLKEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLAS 169 (209)
Q Consensus 120 ~~~~~~~~~~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~ 169 (209)
++.....++|||+|||+++.+. .||+|++|++|++++.|+++++...
T Consensus 208 ---l~~l~~~g~tiiivtHd~~~~~~~adrv~vl~~G~i~~~g~~~~~~~~ 255 (305)
T PRK13651 208 ---FDNLNKQGKTIILVTHDLDNVLEWTKRTIFFKDGKIIKDGDTYDILSD 255 (305)
T ss_pred ---HHHHHHCCCEEEEEeeCHHHHHHhCCEEEEEECCEEEEECCHHHHhcC
Confidence 2232335889999999999875 5899999999999999999998754
No 84
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.88 E-value=1.6e-23 Score=188.18 Aligned_cols=98 Identities=20% Similarity=0.358 Sum_probs=85.4
Q ss_pred eecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccch
Q psy12535 40 LVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGA 119 (209)
Q Consensus 40 ~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (209)
.++..+.+|||||+|||+|||||+.+|+|||+||||++||+.++..+.+.
T Consensus 154 ~~~~~p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~l------------------------------ 203 (330)
T PRK09473 154 RMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTL------------------------------ 203 (330)
T ss_pred HhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHH------------------------------
Confidence 35678889999999999999999999999999999999999988888663
Q ss_pred hhhhhhhcc-ccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhcc
Q psy12535 120 LSLVRTSFL-KEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLASG 170 (209)
Q Consensus 120 ~~~~~~~~~-~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~~ 170 (209)
++.... .+.|+|+|||+++.+. .+|+|++|++|+|++.|+++++..+.
T Consensus 204 ---L~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~g~~~~i~~~p 253 (330)
T PRK09473 204 ---LNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGNARDVFYQP 253 (330)
T ss_pred ---HHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCC
Confidence 222222 3789999999999986 58999999999999999999998754
No 85
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=1.6e-23 Score=187.75 Aligned_cols=97 Identities=19% Similarity=0.348 Sum_probs=84.0
Q ss_pred ecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchh
Q psy12535 41 VGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGAL 120 (209)
Q Consensus 41 vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (209)
....+.+|||||+|||+|||||+.+|+||||||||++||+.++..+.+.
T Consensus 152 ~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~l------------------------------- 200 (330)
T PRK15093 152 MRSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRL------------------------------- 200 (330)
T ss_pred HhCCchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHH-------------------------------
Confidence 3556679999999999999999999999999999999999988888663
Q ss_pred hhhhhhcc-ccceeeeeeeehheecc-cceEEEeeccceeecchhhHHhhcc
Q psy12535 121 SLVRTSFL-KEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQLLASG 170 (209)
Q Consensus 121 ~~~~~~~~-~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l~~~~ 170 (209)
++.... .+.|||+|||+++.+.. +|+|++|++|+|++.|+.++++.+.
T Consensus 201 --L~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~G~ive~g~~~~i~~~p 250 (330)
T PRK15093 201 --LTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQTVETAPSKELVTTP 250 (330)
T ss_pred --HHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCC
Confidence 333333 37899999999999864 8999999999999999999987653
No 86
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.88 E-value=1.7e-23 Score=185.02 Aligned_cols=101 Identities=23% Similarity=0.395 Sum_probs=85.9
Q ss_pred CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535 36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG 115 (209)
Q Consensus 36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (209)
|+.......+.+|||||||||+|||||+.+|++|||||||+|||+.+...+++.
T Consensus 113 ~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~-------------------------- 166 (302)
T TIGR01188 113 ELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDY-------------------------- 166 (302)
T ss_pred CChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHH--------------------------
Confidence 334445667789999999999999999999999999999999999988877663
Q ss_pred ccchhhhhhhhccccceeeeeeeehheecc-cceEEEeeccceeecchhhHHhhc
Q psy12535 116 VRGALSLVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQLLAS 169 (209)
Q Consensus 116 ~~~~~~~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l~~~ 169 (209)
++....+|+|||++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 167 -------l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 214 (302)
T TIGR01188 167 -------IRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRR 214 (302)
T ss_pred -------HHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHh
Confidence 33333358899999999999865 899999999999999999998764
No 87
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=7.7e-24 Score=189.99 Aligned_cols=97 Identities=29% Similarity=0.409 Sum_probs=84.2
Q ss_pred ecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchh
Q psy12535 41 VGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGAL 120 (209)
Q Consensus 41 vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (209)
....+.+|||||+|||+|||||+.+|+|||+||||++||..++..+++.+
T Consensus 148 ~~~~p~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL------------------------------ 197 (327)
T PRK11308 148 YDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLM------------------------------ 197 (327)
T ss_pred hcCCCccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHH------------------------------
Confidence 34566799999999999999999999999999999999999888887633
Q ss_pred hhhhhhcc-ccceeeeeeeehheecc-cceEEEeeccceeecchhhHHhhcc
Q psy12535 121 SLVRTSFL-KEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQLLASG 170 (209)
Q Consensus 121 ~~~~~~~~-~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l~~~~ 170 (209)
.+... .+.|+|+|||+++.+.. +|+|++|.+|+|++.|+.++++++.
T Consensus 198 ---~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~ive~g~~~~~~~~p 246 (327)
T PRK11308 198 ---MDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKGTKEQIFNNP 246 (327)
T ss_pred ---HHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHhcCC
Confidence 22222 37899999999999875 8999999999999999999998754
No 88
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=4e-24 Score=187.12 Aligned_cols=100 Identities=27% Similarity=0.412 Sum_probs=84.5
Q ss_pred CceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccc
Q psy12535 37 DRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGV 116 (209)
Q Consensus 37 ~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (209)
++..+...+.+||||||||++|||||+.+|+||||||||++||+.+...+++.
T Consensus 130 L~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~--------------------------- 182 (279)
T PRK13650 130 MQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKT--------------------------- 182 (279)
T ss_pred CHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHH---------------------------
Confidence 33344556679999999999999999999999999999999999888877663
Q ss_pred cchhhhhhhhcc-ccceeeeeeeehheecccceEEEeeccceeecchhhHHhhc
Q psy12535 117 RGALSLVRTSFL-KEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLAS 169 (209)
Q Consensus 117 ~~~~~~~~~~~~-~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~~~ 169 (209)
++.... .++|||++||+++.+..||+|++|++|+++..|+++++...
T Consensus 183 ------l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13650 183 ------IKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSR 230 (279)
T ss_pred ------HHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHcC
Confidence 223233 38899999999998877999999999999999999988754
No 89
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=2e-23 Score=186.73 Aligned_cols=98 Identities=22% Similarity=0.446 Sum_probs=84.8
Q ss_pred eeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccc
Q psy12535 39 TLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRG 118 (209)
Q Consensus 39 t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (209)
...++.+.+|||||||||+|||||+.+|+||||||||++||+.+...+++.+
T Consensus 168 ~~~~~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L---------------------------- 219 (320)
T PRK13631 168 SYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLI---------------------------- 219 (320)
T ss_pred hHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHH----------------------------
Confidence 4567788899999999999999999999999999999999999888886632
Q ss_pred hhhhhhhhccccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhc
Q psy12535 119 ALSLVRTSFLKEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLAS 169 (209)
Q Consensus 119 ~~~~~~~~~~~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~ 169 (209)
.....+++|||+|||+++.+. .||+|++|++|++++.|+++++...
T Consensus 220 -----~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G~i~~~g~~~~~~~~ 266 (320)
T PRK13631 220 -----LDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKILKTGTPYEIFTD 266 (320)
T ss_pred -----HHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 222335889999999999874 6899999999999999999988653
No 90
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.88 E-value=7.9e-24 Score=190.27 Aligned_cols=98 Identities=23% Similarity=0.409 Sum_probs=84.8
Q ss_pred eecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccch
Q psy12535 40 LVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGA 119 (209)
Q Consensus 40 ~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (209)
.....+.+|||||+|||+|||||+.+|+|||+||||++||+.++..+++.
T Consensus 154 ~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~l------------------------------ 203 (331)
T PRK15079 154 LINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNL------------------------------ 203 (331)
T ss_pred HhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHH------------------------------
Confidence 34566779999999999999999999999999999999999988888763
Q ss_pred hhhhhhhcc-ccceeeeeeeehheecc-cceEEEeeccceeecchhhHHhhcc
Q psy12535 120 LSLVRTSFL-KEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQLLASG 170 (209)
Q Consensus 120 ~~~~~~~~~-~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l~~~~ 170 (209)
++.... .+.|+|+|||+++.+.. +|+|++|.+|+|++.|++++++.+.
T Consensus 204 ---L~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~G~ive~g~~~~i~~~~ 253 (331)
T PRK15079 204 ---LQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAVELGTYDEVYHNP 253 (331)
T ss_pred ---HHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHcCC
Confidence 222222 37899999999999875 8999999999999999999998654
No 91
>KOG0054|consensus
Probab=99.88 E-value=1.6e-23 Score=213.84 Aligned_cols=137 Identities=27% Similarity=0.479 Sum_probs=120.9
Q ss_pred CCccccCCC--CCCCCCCcceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhh
Q psy12535 2 GPILAPMGP--GHPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVD 79 (209)
Q Consensus 2 g~~~~~~~~--~~~~~~~~~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD 79 (209)
|++..+..| +++|+.++++++.|+|.+.+..+|.|+++.|.|+|.++|-||||.++|||||+++++||+|||+|+++|
T Consensus 1228 GTvR~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD 1307 (1381)
T KOG0054|consen 1228 GTVRFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVD 1307 (1381)
T ss_pred CccccccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEEecccccCC
Confidence 455555544 478889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeeccceee
Q psy12535 80 AHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEA 159 (209)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~ 159 (209)
+.+...+-+. +++ .-+++|||.|.|+++.+-.+|||+||++|+|+|
T Consensus 1308 ~~TD~lIQ~t---------------------------------IR~-~F~dcTVltIAHRl~TVmd~DrVlVld~G~v~E 1353 (1381)
T KOG0054|consen 1308 PETDALIQKT---------------------------------IRE-EFKDCTVLTIAHRLNTVMDSDRVLVLDAGRVVE 1353 (1381)
T ss_pred hHHHHHHHHH---------------------------------HHH-HhcCCeEEEEeeccchhhhcCeEEEeeCCeEee
Confidence 9887666443 222 236899999999999999999999999999999
Q ss_pred cchhhHHhhccCC
Q psy12535 160 FGTTTQLLASGLD 172 (209)
Q Consensus 160 ~G~~~~l~~~~~~ 172 (209)
.|+|.+|+++...
T Consensus 1354 fdsP~~Ll~~~~S 1366 (1381)
T KOG0054|consen 1354 FDSPAELLSDKDS 1366 (1381)
T ss_pred cCChHHHHhCCcc
Confidence 9999999987543
No 92
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.88 E-value=1.7e-23 Score=184.33 Aligned_cols=124 Identities=44% Similarity=0.794 Sum_probs=102.3
Q ss_pred eeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCC
Q psy12535 21 VKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPR 100 (209)
Q Consensus 21 ~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~ 100 (209)
++.+++.+.+..+|.++++.+++.+..||||||||++|||||+.+|++|||||||++||+.+...+++.++..
T Consensus 133 l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~------- 205 (282)
T cd03291 133 VKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCK------- 205 (282)
T ss_pred HHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHH-------
Confidence 3445566677788888888999999999999999999999999999999999999999998877776533211
Q ss_pred ccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeeccceeecchhhHHhhccCCchhcc
Q psy12535 101 FDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGLDFTQLL 177 (209)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~~~~~~~~~~~ 177 (209)
...+.|||++||+++.+..||+|++|++|++++.|+++++.+....+.+.+
T Consensus 206 --------------------------~~~~~tIiiisH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~~~ 256 (282)
T cd03291 206 --------------------------LMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQSLRPDFSSKL 256 (282)
T ss_pred --------------------------hhCCCEEEEEeCChHHHHhCCEEEEEECCEEEEECCHHHHHhcchHHHHHH
Confidence 123689999999999888899999999999999999999876544454333
No 93
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.88 E-value=9.7e-24 Score=191.25 Aligned_cols=101 Identities=32% Similarity=0.439 Sum_probs=85.2
Q ss_pred CceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccc
Q psy12535 37 DRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGV 116 (209)
Q Consensus 37 ~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (209)
+......++.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.+
T Consensus 126 L~~~~~~~~~~LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L-------------------------- 179 (353)
T PRK10851 126 LAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWL-------------------------- 179 (353)
T ss_pred CchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHH--------------------------
Confidence 334455667799999999999999999999999999999999999888886632
Q ss_pred cchhhhhhhhccc-cceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhcc
Q psy12535 117 RGALSLVRTSFLK-EKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLASG 170 (209)
Q Consensus 117 ~~~~~~~~~~~~~-~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~~ 170 (209)
++...+ ++|+|+|||+++.+. .+|+|++|++|+|++.|+++++..+.
T Consensus 180 -------~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~~~p 228 (353)
T PRK10851 180 -------RQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWREP 228 (353)
T ss_pred -------HHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 222223 789999999999865 58999999999999999999997653
No 94
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.88 E-value=2.2e-23 Score=188.91 Aligned_cols=102 Identities=30% Similarity=0.423 Sum_probs=87.0
Q ss_pred CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535 36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG 115 (209)
Q Consensus 36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (209)
|+.....+.+.+|||||||||+|||||+.+|++||||||||+||+.++..+.+.+.
T Consensus 123 ~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~------------------------ 178 (353)
T TIGR03265 123 GLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIR------------------------ 178 (353)
T ss_pred CCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHH------------------------
Confidence 45556677788999999999999999999999999999999999998888866432
Q ss_pred ccchhhhhhhhcc-ccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhcc
Q psy12535 116 VRGALSLVRTSFL-KEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLASG 170 (209)
Q Consensus 116 ~~~~~~~~~~~~~-~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~~ 170 (209)
+... .+.|+|+|||+++.+. .+|+|++|++|++++.|+++++....
T Consensus 179 ---------~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~p 226 (353)
T TIGR03265 179 ---------QLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRHP 226 (353)
T ss_pred ---------HHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence 2222 3789999999999865 58999999999999999999998653
No 95
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.88 E-value=2.3e-23 Score=185.06 Aligned_cols=97 Identities=31% Similarity=0.504 Sum_probs=84.0
Q ss_pred eecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccch
Q psy12535 40 LVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGA 119 (209)
Q Consensus 40 ~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (209)
.......+||||||||++|||||+.+|++|||||||+|||+.++..+++.
T Consensus 131 ~~~~~~~~LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~------------------------------ 180 (306)
T PRK13537 131 KADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWER------------------------------ 180 (306)
T ss_pred HhcCchhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHH------------------------------
Confidence 33455679999999999999999999999999999999999988887663
Q ss_pred hhhhhhhccccceeeeeeeehheecc-cceEEEeeccceeecchhhHHhhc
Q psy12535 120 LSLVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQLLAS 169 (209)
Q Consensus 120 ~~~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l~~~ 169 (209)
++....+|+|||++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 181 ---l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 228 (306)
T PRK13537 181 ---LRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIES 228 (306)
T ss_pred ---HHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 33333458999999999999865 899999999999999999999755
No 96
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=3e-23 Score=182.46 Aligned_cols=98 Identities=21% Similarity=0.462 Sum_probs=84.6
Q ss_pred eeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccc
Q psy12535 39 TLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRG 118 (209)
Q Consensus 39 t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (209)
+.....+.+||||||||++|||||+.+|+||||||||++||+.+...+++.
T Consensus 136 ~~~~~~~~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~----------------------------- 186 (287)
T PRK13637 136 DYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNK----------------------------- 186 (287)
T ss_pred hhccCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHH-----------------------------
Confidence 456677889999999999999999999999999999999999988888663
Q ss_pred hhhhhhhhcc-ccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhc
Q psy12535 119 ALSLVRTSFL-KEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLAS 169 (209)
Q Consensus 119 ~~~~~~~~~~-~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~ 169 (209)
++.... .++|||++||+++.+. .||+|++|++|++++.|+++++...
T Consensus 187 ----l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 235 (287)
T PRK13637 187 ----IKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVFKE 235 (287)
T ss_pred ----HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 223233 3789999999999875 5899999999999999999998653
No 97
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.88 E-value=2.9e-23 Score=176.71 Aligned_cols=99 Identities=25% Similarity=0.414 Sum_probs=83.2
Q ss_pred CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535 36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG 115 (209)
Q Consensus 36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (209)
|+.......+.+||||||||++|||||+.+|+||||||||++||+.+...+.+.
T Consensus 134 ~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~-------------------------- 187 (243)
T TIGR02315 134 GLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDY-------------------------- 187 (243)
T ss_pred CcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH--------------------------
Confidence 344455667789999999999999999999999999999999999888777653
Q ss_pred ccchhhhhhhhcc-ccceeeeeeeehheec-ccceEEEeeccceeecchhhHHh
Q psy12535 116 VRGALSLVRTSFL-KEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLL 167 (209)
Q Consensus 116 ~~~~~~~~~~~~~-~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~ 167 (209)
++.... .++|||++||+++.+. .||+|++|++|++++.|+++++.
T Consensus 188 -------l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 234 (243)
T TIGR02315 188 -------LKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPSELD 234 (243)
T ss_pred -------HHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecCCHHHhC
Confidence 222222 3789999999999985 58999999999999999988863
No 98
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.88 E-value=2.9e-23 Score=176.94 Aligned_cols=101 Identities=34% Similarity=0.446 Sum_probs=84.6
Q ss_pred CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535 36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG 115 (209)
Q Consensus 36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (209)
|+.......+.+|||||||||+|||||+.+|++|||||||++||+.+...+.+.
T Consensus 125 ~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~-------------------------- 178 (239)
T cd03296 125 QLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRW-------------------------- 178 (239)
T ss_pred CChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH--------------------------
Confidence 344455667789999999999999999999999999999999999988877663
Q ss_pred ccchhhhhhhhcc-ccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhc
Q psy12535 116 VRGALSLVRTSFL-KEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLAS 169 (209)
Q Consensus 116 ~~~~~~~~~~~~~-~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~ 169 (209)
+..... .++|||++||+++.+. .+|+|++|++|++++.|+++++...
T Consensus 179 -------l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 227 (239)
T cd03296 179 -------LRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYDH 227 (239)
T ss_pred -------HHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHhcC
Confidence 222223 3789999999999875 4899999999999999999888643
No 99
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.88 E-value=3.5e-23 Score=176.10 Aligned_cols=101 Identities=28% Similarity=0.427 Sum_probs=87.3
Q ss_pred CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535 36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG 115 (209)
Q Consensus 36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (209)
|+.......+.+|||||+||++|||||+.+|+||||||||++||+.+...+.+.+
T Consensus 121 gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l------------------------- 175 (236)
T TIGR03864 121 GLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHV------------------------- 175 (236)
T ss_pred CChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHH-------------------------
Confidence 5556667788899999999999999999999999999999999999888887632
Q ss_pred ccchhhhhhhhc-cccceeeeeeeehheecccceEEEeeccceeecchhhHHhhc
Q psy12535 116 VRGALSLVRTSF-LKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLAS 169 (209)
Q Consensus 116 ~~~~~~~~~~~~-~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~~~ 169 (209)
.+.. .+++|+|++||+++.+..+|+|++|++|++++.|+++++..+
T Consensus 176 --------~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (236)
T TIGR03864 176 --------RALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGA 222 (236)
T ss_pred --------HHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHHHH
Confidence 2222 247899999999998877999999999999999999888765
No 100
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.88 E-value=3.4e-23 Score=175.12 Aligned_cols=100 Identities=27% Similarity=0.377 Sum_probs=84.7
Q ss_pred CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535 36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG 115 (209)
Q Consensus 36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (209)
|+.......+.+||||||||++|||||+.+|++|||||||++||+.+...+.+.
T Consensus 122 ~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~-------------------------- 175 (232)
T cd03218 122 HITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKI-------------------------- 175 (232)
T ss_pred CChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHH--------------------------
Confidence 455556777889999999999999999999999999999999999988877663
Q ss_pred ccchhhhhhhhccccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhh
Q psy12535 116 VRGALSLVRTSFLKEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLA 168 (209)
Q Consensus 116 ~~~~~~~~~~~~~~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~ 168 (209)
++.....++|||++||+++.+. .+|+|++|++|++++.|+++++..
T Consensus 176 -------l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 222 (232)
T cd03218 176 -------IKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAA 222 (232)
T ss_pred -------HHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhhc
Confidence 2222335789999999998765 589999999999999999888753
No 101
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.87 E-value=1.9e-23 Score=191.18 Aligned_cols=96 Identities=27% Similarity=0.460 Sum_probs=83.5
Q ss_pred ccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhh
Q psy12535 43 DKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSL 122 (209)
Q Consensus 43 ~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (209)
+.+.++|||||||+|||||++-+|++++||||||+||...+.++.+.
T Consensus 422 RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~L--------------------------------- 468 (534)
T COG4172 422 RYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDL--------------------------------- 468 (534)
T ss_pred cCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHH---------------------------------
Confidence 33459999999999999999999999999999999999888888763
Q ss_pred hhhhc-cccceeeeeeeehheecc-cceEEEeeccceeecchhhHHhhccC
Q psy12535 123 VRTSF-LKEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQLLASGL 171 (209)
Q Consensus 123 ~~~~~-~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l~~~~~ 171 (209)
++.+. +.+-+-++||||+..++. ||+|+||++|+|+++|+.++++++..
T Consensus 469 Lr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~~GkiVE~G~~~~if~~P~ 519 (534)
T COG4172 469 LRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGKIVEQGPTEAVFANPQ 519 (534)
T ss_pred HHHHHHHhCCeEEEEeccHHHHHHhhceEEEEeCCEEeeeCCHHHHhcCCC
Confidence 33332 247799999999999975 89999999999999999999998764
No 102
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.87 E-value=1.3e-23 Score=191.89 Aligned_cols=102 Identities=27% Similarity=0.412 Sum_probs=85.4
Q ss_pred CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535 36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG 115 (209)
Q Consensus 36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (209)
|+.......+.+|||||||||+|||||+.+|++||||||||+||+..+..+.+.+
T Consensus 133 ~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L------------------------- 187 (375)
T PRK09452 133 QLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNEL------------------------- 187 (375)
T ss_pred CCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHH-------------------------
Confidence 3444455666799999999999999999999999999999999999888876643
Q ss_pred ccchhhhhhhhcc-ccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhcc
Q psy12535 116 VRGALSLVRTSFL-KEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLASG 170 (209)
Q Consensus 116 ~~~~~~~~~~~~~-~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~~ 170 (209)
+.... .+.|+|+|||+++.+. .+|+|++|++|+|++.|+++++....
T Consensus 188 --------~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~p 236 (375)
T PRK09452 188 --------KALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEEP 236 (375)
T ss_pred --------HHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 22222 3789999999999864 58999999999999999999997653
No 103
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.87 E-value=2.8e-23 Score=175.60 Aligned_cols=101 Identities=22% Similarity=0.370 Sum_probs=88.3
Q ss_pred CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535 36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG 115 (209)
Q Consensus 36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (209)
++...+..+..+||-||||||+|||||+++|+++||||||||||..+.+.+.+
T Consensus 122 ~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~d--------------------------- 174 (245)
T COG4555 122 QLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHD--------------------------- 174 (245)
T ss_pred ChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHH---------------------------
Confidence 45556677888999999999999999999999999999999999987776655
Q ss_pred ccchhhhhhhhccccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhc
Q psy12535 116 VRGALSLVRTSFLKEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLAS 169 (209)
Q Consensus 116 ~~~~~~~~~~~~~~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~ 169 (209)
.+..+..+|++||++||.++.++ .||+|++|++|+++..|+.+++.+.
T Consensus 175 ------fi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~r 223 (245)
T COG4555 175 ------FIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDAR 223 (245)
T ss_pred ------HHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHHH
Confidence 34444567999999999999998 6999999999999999999998754
No 104
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=1.5e-23 Score=183.01 Aligned_cols=95 Identities=28% Similarity=0.415 Sum_probs=80.6
Q ss_pred eecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccch
Q psy12535 40 LVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGA 119 (209)
Q Consensus 40 ~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (209)
.....+.+||||||||++|||||+.+|++|||||||++||+.+...+++.
T Consensus 131 ~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~------------------------------ 180 (274)
T PRK13647 131 FRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEI------------------------------ 180 (274)
T ss_pred HhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHH------------------------------
Confidence 34455569999999999999999999999999999999999988888663
Q ss_pred hhhhhhhccccceeeeeeeehheec-ccceEEEeeccceeecchhhHHh
Q psy12535 120 LSLVRTSFLKEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLL 167 (209)
Q Consensus 120 ~~~~~~~~~~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~ 167 (209)
++.....++|||++||+++.+. .||+|++|++|++++.|+++++.
T Consensus 181 ---l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 226 (274)
T PRK13647 181 ---LDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLLT 226 (274)
T ss_pred ---HHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHhc
Confidence 2232334789999999999885 58999999999999999987653
No 105
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.87 E-value=5e-23 Score=176.13 Aligned_cols=101 Identities=27% Similarity=0.500 Sum_probs=85.3
Q ss_pred CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535 36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG 115 (209)
Q Consensus 36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (209)
|+.......+.+|||||||||+|||||+.+|+||||||||++||+.+...+.+.
T Consensus 133 gl~~~~~~~~~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~-------------------------- 186 (250)
T PRK11264 133 GLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNT-------------------------- 186 (250)
T ss_pred CCcchhhCChhhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHH--------------------------
Confidence 444445667889999999999999999999999999999999999988877663
Q ss_pred ccchhhhhhhhccccceeeeeeeehheecc-cceEEEeeccceeecchhhHHhhc
Q psy12535 116 VRGALSLVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQLLAS 169 (209)
Q Consensus 116 ~~~~~~~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l~~~ 169 (209)
+.....+++|||++||+++.+.. +|+|++|++|++++.|+++++...
T Consensus 187 -------l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 234 (250)
T PRK11264 187 -------IRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALFAD 234 (250)
T ss_pred -------HHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHhcC
Confidence 22223347899999999998864 899999999999999999988653
No 106
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=5.2e-23 Score=180.99 Aligned_cols=97 Identities=27% Similarity=0.440 Sum_probs=83.4
Q ss_pred eecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccch
Q psy12535 40 LVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGA 119 (209)
Q Consensus 40 ~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (209)
.....+..||||||||++|||||+.+|+||||||||++||+.+...+.+.
T Consensus 137 ~~~~~~~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~------------------------------ 186 (288)
T PRK13643 137 FWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQL------------------------------ 186 (288)
T ss_pred hccCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHH------------------------------
Confidence 34567789999999999999999999999999999999999988877663
Q ss_pred hhhhhhhccccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhc
Q psy12535 120 LSLVRTSFLKEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLAS 169 (209)
Q Consensus 120 ~~~~~~~~~~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~ 169 (209)
+......++|||++||+++.+. .||+|++|++|++++.|+++++...
T Consensus 187 ---l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 234 (288)
T PRK13643 187 ---FESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQE 234 (288)
T ss_pred ---HHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHcC
Confidence 2222335889999999999875 5899999999999999999998653
No 107
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.87 E-value=4e-23 Score=182.72 Aligned_cols=100 Identities=28% Similarity=0.460 Sum_probs=85.0
Q ss_pred CceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccc
Q psy12535 37 DRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGV 116 (209)
Q Consensus 37 ~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (209)
+.......+.+||||||||++|||||+.+|++|||||||++||+.+...+.+.
T Consensus 125 l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~--------------------------- 177 (303)
T TIGR01288 125 LESKADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWER--------------------------- 177 (303)
T ss_pred ChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHH---------------------------
Confidence 33344566779999999999999999999999999999999999988877663
Q ss_pred cchhhhhhhhccccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhc
Q psy12535 117 RGALSLVRTSFLKEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLAS 169 (209)
Q Consensus 117 ~~~~~~~~~~~~~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~ 169 (209)
++....+++|||++||+++.+. .||+|++|++|+++..|+++++...
T Consensus 178 ------l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 225 (303)
T TIGR01288 178 ------LRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALIDE 225 (303)
T ss_pred ------HHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 2333335889999999999986 4899999999999999999998754
No 108
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.87 E-value=4.2e-23 Score=173.27 Aligned_cols=98 Identities=28% Similarity=0.477 Sum_probs=83.0
Q ss_pred ceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccccc
Q psy12535 38 RTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVR 117 (209)
Q Consensus 38 ~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (209)
.......+.+||||||||++|||||+.+|++|||||||++||+.+...+.+.
T Consensus 123 ~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~---------------------------- 174 (222)
T cd03224 123 KERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEA---------------------------- 174 (222)
T ss_pred hhhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHH----------------------------
Confidence 3445667789999999999999999999999999999999999988887663
Q ss_pred chhhhhhhhccccceeeeeeeehheecc-cceEEEeeccceeecchhhHHhh
Q psy12535 118 GALSLVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQLLA 168 (209)
Q Consensus 118 ~~~~~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l~~ 168 (209)
++.....++|||++||+++.+.. +|+|++|++|++++.|+++++..
T Consensus 175 -----l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 221 (222)
T cd03224 175 -----IRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLA 221 (222)
T ss_pred -----HHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHhc
Confidence 22223357899999999998754 89999999999999998887653
No 109
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.87 E-value=5e-23 Score=184.28 Aligned_cols=101 Identities=28% Similarity=0.437 Sum_probs=85.6
Q ss_pred CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535 36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG 115 (209)
Q Consensus 36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (209)
|+.......+.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.+
T Consensus 89 ~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l------------------------- 143 (325)
T TIGR01187 89 QLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLEL------------------------- 143 (325)
T ss_pred CCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHH-------------------------
Confidence 4445556677899999999999999999999999999999999999888876632
Q ss_pred ccchhhhhhhhcc-ccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhc
Q psy12535 116 VRGALSLVRTSFL-KEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLAS 169 (209)
Q Consensus 116 ~~~~~~~~~~~~~-~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~ 169 (209)
++... .++|+|+|||+++.+. .||+|++|++|++++.|+++++...
T Consensus 144 --------~~l~~~~g~tiiivTHd~~e~~~~~d~i~vl~~G~i~~~g~~~~~~~~ 191 (325)
T TIGR01187 144 --------KTIQEQLGITFVFVTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEIYEE 191 (325)
T ss_pred --------HHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 22222 3789999999999875 5899999999999999999998764
No 110
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.87 E-value=4.5e-23 Score=187.71 Aligned_cols=101 Identities=28% Similarity=0.435 Sum_probs=85.2
Q ss_pred CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535 36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG 115 (209)
Q Consensus 36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (209)
|+.......+.+|||||||||+|||||+.+|+||||||||++||+.++..+.+.+
T Consensus 122 gL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L------------------------- 176 (369)
T PRK11000 122 QLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEI------------------------- 176 (369)
T ss_pred CChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH-------------------------
Confidence 3444556667799999999999999999999999999999999999888876632
Q ss_pred ccchhhhhhhhcc-ccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhc
Q psy12535 116 VRGALSLVRTSFL-KEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLAS 169 (209)
Q Consensus 116 ~~~~~~~~~~~~~-~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~ 169 (209)
++... .+.|+|+|||+++.+. .||+|++|++|++++.|+++++...
T Consensus 177 --------~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~~ 224 (369)
T PRK11000 177 --------SRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY 224 (369)
T ss_pred --------HHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 22222 3789999999999875 5899999999999999999998764
No 111
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.87 E-value=4.3e-23 Score=173.65 Aligned_cols=97 Identities=27% Similarity=0.431 Sum_probs=81.1
Q ss_pred CceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccc
Q psy12535 37 DRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGV 116 (209)
Q Consensus 37 ~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (209)
+.......+.+||||||||++||||++.+|++|||||||++||+.+...+.+.
T Consensus 121 l~~~~~~~~~~LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~--------------------------- 173 (220)
T cd03265 121 LLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEY--------------------------- 173 (220)
T ss_pred CHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHH---------------------------
Confidence 33444566779999999999999999999999999999999999988877663
Q ss_pred cchhhhhhhhccc-cceeeeeeeehheecc-cceEEEeeccceeecchhhHH
Q psy12535 117 RGALSLVRTSFLK-EKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQL 166 (209)
Q Consensus 117 ~~~~~~~~~~~~~-~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l 166 (209)
+.....+ ++|||++||+++.+.. +|+|++|++|++++.|+++++
T Consensus 174 ------l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 174 ------IEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred ------HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 2222333 7899999999998865 899999999999999887764
No 112
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.87 E-value=3.7e-23 Score=173.04 Aligned_cols=93 Identities=31% Similarity=0.490 Sum_probs=77.5
Q ss_pred CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535 36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG 115 (209)
Q Consensus 36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (209)
|+.......+.+||||||||++|||||+.+|++|||||||++||+.+...+++.
T Consensus 119 ~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~-------------------------- 172 (213)
T cd03259 119 GLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREE-------------------------- 172 (213)
T ss_pred CChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH--------------------------
Confidence 444455666789999999999999999999999999999999999988887663
Q ss_pred ccchhhhhhhhcc-ccceeeeeeeehheecc-cceEEEeeccceeecc
Q psy12535 116 VRGALSLVRTSFL-KEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFG 161 (209)
Q Consensus 116 ~~~~~~~~~~~~~-~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G 161 (209)
+..... .++|||++||+++.+.. ||+|++|++|++++.|
T Consensus 173 -------l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 173 -------LKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred -------HHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 222222 37899999999998764 8999999999998765
No 113
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=4.9e-23 Score=185.69 Aligned_cols=101 Identities=27% Similarity=0.431 Sum_probs=86.1
Q ss_pred CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535 36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG 115 (209)
Q Consensus 36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (209)
|+.......+.+|||||||||+|||||+.+|+||||||||++||+.+...+.+.
T Consensus 129 gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~-------------------------- 182 (343)
T PRK11153 129 GLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILEL-------------------------- 182 (343)
T ss_pred CCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHH--------------------------
Confidence 444555667789999999999999999999999999999999999988887663
Q ss_pred ccchhhhhhhhcc-ccceeeeeeeehheecc-cceEEEeeccceeecchhhHHhhc
Q psy12535 116 VRGALSLVRTSFL-KEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQLLAS 169 (209)
Q Consensus 116 ~~~~~~~~~~~~~-~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l~~~ 169 (209)
++.... .++|||++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 183 -------L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~~~ 231 (343)
T PRK11153 183 -------LKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFSH 231 (343)
T ss_pred -------HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 233222 37899999999998765 899999999999999999998765
No 114
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.87 E-value=5.2e-23 Score=174.32 Aligned_cols=100 Identities=31% Similarity=0.463 Sum_probs=84.4
Q ss_pred CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535 36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG 115 (209)
Q Consensus 36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (209)
|+.........+||||||||++|||||+.+|++|||||||++||+.+...+++.
T Consensus 129 ~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~-------------------------- 182 (233)
T cd03258 129 GLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILAL-------------------------- 182 (233)
T ss_pred CChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHH--------------------------
Confidence 445555667789999999999999999999999999999999999988877663
Q ss_pred ccchhhhhhhhccc-cceeeeeeeehheecc-cceEEEeeccceeecchhhHHhh
Q psy12535 116 VRGALSLVRTSFLK-EKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQLLA 168 (209)
Q Consensus 116 ~~~~~~~~~~~~~~-~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l~~ 168 (209)
++....+ ++|||++||+++.+.. +|++++|++|++++.|+++++..
T Consensus 183 -------l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (233)
T cd03258 183 -------LRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFA 230 (233)
T ss_pred -------HHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhc
Confidence 2232333 7899999999998764 89999999999999999888754
No 115
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.87 E-value=5.9e-23 Score=174.29 Aligned_cols=98 Identities=20% Similarity=0.328 Sum_probs=83.9
Q ss_pred eeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccc
Q psy12535 39 TLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRG 118 (209)
Q Consensus 39 t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (209)
+.....+.+|||||||||+|||||+.+|+||||||||++||+.+...+.+.+
T Consensus 117 ~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~~~~l~~~l---------------------------- 168 (230)
T TIGR02770 117 EVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLL---------------------------- 168 (230)
T ss_pred HHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHH----------------------------
Confidence 4456777899999999999999999999999999999999999887776632
Q ss_pred hhhhhhhhcc-ccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhc
Q psy12535 119 ALSLVRTSFL-KEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLAS 169 (209)
Q Consensus 119 ~~~~~~~~~~-~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~ 169 (209)
.+... .++|||++||+++.+. .+|+|++|++|++++.|+++++...
T Consensus 169 -----~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 216 (230)
T TIGR02770 169 -----RELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYN 216 (230)
T ss_pred -----HHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 22222 3789999999999986 5899999999999999999998754
No 116
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=3.8e-23 Score=180.92 Aligned_cols=101 Identities=22% Similarity=0.387 Sum_probs=86.3
Q ss_pred CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535 36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG 115 (209)
Q Consensus 36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (209)
|+...+...+.+||||||||++|||||+.+|++|||||||++||+.+...+.+.
T Consensus 133 gL~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~-------------------------- 186 (280)
T PRK13633 133 GMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNT-------------------------- 186 (280)
T ss_pred CCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHH--------------------------
Confidence 444455666779999999999999999999999999999999999988888663
Q ss_pred ccchhhhhhhhcc-ccceeeeeeeehheecccceEEEeeccceeecchhhHHhhc
Q psy12535 116 VRGALSLVRTSFL-KEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLAS 169 (209)
Q Consensus 116 ~~~~~~~~~~~~~-~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~~~ 169 (209)
++.... .+.|||++||+++.+..||++++|++|++++.|+++++..+
T Consensus 187 -------l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 234 (280)
T PRK13633 187 -------IKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIFKE 234 (280)
T ss_pred -------HHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHHHhcC
Confidence 222222 37899999999999877999999999999999999998764
No 117
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.87 E-value=5.2e-23 Score=169.78 Aligned_cols=91 Identities=24% Similarity=0.475 Sum_probs=79.4
Q ss_pred cceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhhh
Q psy12535 44 KGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLV 123 (209)
Q Consensus 44 ~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (209)
.+-.|||||+|||+|||||+.+|++|++||||++|||+...++.+ ++
T Consensus 138 ~plhlsggqqqrvaiaralmmkpqvllfdeptaaldpeitaqvv~---------------------------------ii 184 (242)
T COG4161 138 YPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVS---------------------------------II 184 (242)
T ss_pred CceecccchhhhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHH---------------------------------HH
Confidence 334999999999999999999999999999999999987666654 55
Q ss_pred hhhccccceeeeeeeehheecc-cceEEEeeccceeecchhhHHh
Q psy12535 124 RTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQLL 167 (209)
Q Consensus 124 ~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l~ 167 (209)
+++...|.|-++|||..+..+. +.+|++|++|+|++.|+.+-.-
T Consensus 185 kel~~tgitqvivthev~va~k~as~vvyme~g~ive~g~a~~ft 229 (242)
T COG4161 185 KELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCFT 229 (242)
T ss_pred HHHHhcCceEEEEEeehhHHHhhhhheEeeecCeeEeecchhhcc
Confidence 5656678999999999999876 7999999999999999986543
No 118
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=6.3e-23 Score=179.15 Aligned_cols=101 Identities=24% Similarity=0.417 Sum_probs=86.3
Q ss_pred CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535 36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG 115 (209)
Q Consensus 36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (209)
|++......+..|||||+||++|||||+.+|+||||||||++||+.++..+++.
T Consensus 125 gl~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~-------------------------- 178 (274)
T PRK13644 125 GLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLER-------------------------- 178 (274)
T ss_pred CCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHH--------------------------
Confidence 444555667789999999999999999999999999999999999988877663
Q ss_pred ccchhhhhhhhccccceeeeeeeehheecccceEEEeeccceeecchhhHHhhc
Q psy12535 116 VRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLAS 169 (209)
Q Consensus 116 ~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~~~ 169 (209)
++....++.|||++||+++.+..||+|++|++|++++.|+++++...
T Consensus 179 -------l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 225 (274)
T PRK13644 179 -------IKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLSD 225 (274)
T ss_pred -------HHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHHhcC
Confidence 22223358899999999999877999999999999999999988654
No 119
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.87 E-value=5.9e-23 Score=174.93 Aligned_cols=101 Identities=24% Similarity=0.447 Sum_probs=85.9
Q ss_pred CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535 36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG 115 (209)
Q Consensus 36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (209)
|++......+.+||||||||++|||||+.+|+|+||||||++||+.+...+.+.
T Consensus 125 gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~-------------------------- 178 (240)
T PRK09493 125 GLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKV-------------------------- 178 (240)
T ss_pred CChHHHhcChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH--------------------------
Confidence 555566677789999999999999999999999999999999999988877662
Q ss_pred ccchhhhhhhhccccceeeeeeeehheecc-cceEEEeeccceeecchhhHHhhc
Q psy12535 116 VRGALSLVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQLLAS 169 (209)
Q Consensus 116 ~~~~~~~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l~~~ 169 (209)
+......++|||++||+++.+.. ||+|++|++|++++.|+++++.++
T Consensus 179 -------l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (240)
T PRK09493 179 -------MQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKN 226 (240)
T ss_pred -------HHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhcC
Confidence 22223347899999999999864 899999999999999999887653
No 120
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=6.5e-23 Score=180.55 Aligned_cols=96 Identities=27% Similarity=0.437 Sum_probs=82.6
Q ss_pred ecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchh
Q psy12535 41 VGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGAL 120 (209)
Q Consensus 41 vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (209)
....+.+|||||||||+|||||+.+|+||||||||++||+.+...+++.
T Consensus 139 ~~~~~~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~------------------------------- 187 (290)
T PRK13634 139 LARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEM------------------------------- 187 (290)
T ss_pred hhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHH-------------------------------
Confidence 4566789999999999999999999999999999999999988877663
Q ss_pred hhhhhhcc-ccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhc
Q psy12535 121 SLVRTSFL-KEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLAS 169 (209)
Q Consensus 121 ~~~~~~~~-~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~ 169 (209)
++.... .+.|||++||+++.+. .||||++|++|++++.|+++++...
T Consensus 188 --L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 236 (290)
T PRK13634 188 --FYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIFAD 236 (290)
T ss_pred --HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHhcC
Confidence 223223 3789999999999875 5899999999999999999988654
No 121
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=7.8e-23 Score=179.65 Aligned_cols=97 Identities=24% Similarity=0.442 Sum_probs=83.4
Q ss_pred eecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccch
Q psy12535 40 LVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGA 119 (209)
Q Consensus 40 ~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (209)
.....+.+||||||||++|||||+.+|++|||||||++||+.+...+.+.
T Consensus 138 ~~~~~~~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~------------------------------ 187 (287)
T PRK13641 138 LISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQL------------------------------ 187 (287)
T ss_pred HhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHH------------------------------
Confidence 44667789999999999999999999999999999999999888777653
Q ss_pred hhhhhhhccccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhc
Q psy12535 120 LSLVRTSFLKEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLAS 169 (209)
Q Consensus 120 ~~~~~~~~~~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~ 169 (209)
+......+.|||++||+++.+. .||+|++|++|++++.|+++++...
T Consensus 188 ---l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 235 (287)
T PRK13641 188 ---FKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIFSD 235 (287)
T ss_pred ---HHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 2233335889999999999876 5899999999999999999988654
No 122
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.87 E-value=5.1e-23 Score=173.76 Aligned_cols=88 Identities=34% Similarity=0.515 Sum_probs=76.2
Q ss_pred ceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhhhh
Q psy12535 45 GVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVR 124 (209)
Q Consensus 45 g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (209)
+.+||||||||++|||||+.+|++|||||||++||+.+...+++. ++
T Consensus 139 ~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~---------------------------------l~ 185 (227)
T cd03260 139 ALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEEL---------------------------------IA 185 (227)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHH---------------------------------HH
Confidence 479999999999999999999999999999999999988888663 33
Q ss_pred hhccccceeeeeeeehheec-ccceEEEeeccceeecchhhHH
Q psy12535 125 TSFLKEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQL 166 (209)
Q Consensus 125 ~~~~~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l 166 (209)
+...+ +|||++||+++.+. .||+|++|++|++++.|+++++
T Consensus 186 ~~~~~-~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 227 (227)
T cd03260 186 ELKKE-YTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQI 227 (227)
T ss_pred HHhhC-cEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCcccC
Confidence 33334 89999999999876 5899999999999999887653
No 123
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.87 E-value=6.6e-23 Score=184.98 Aligned_cols=97 Identities=29% Similarity=0.502 Sum_probs=84.4
Q ss_pred eecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccch
Q psy12535 40 LVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGA 119 (209)
Q Consensus 40 ~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (209)
....+..+||||||||++|||||+.+|++|||||||+|||+.+...+++.
T Consensus 165 ~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~------------------------------ 214 (340)
T PRK13536 165 KADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWER------------------------------ 214 (340)
T ss_pred hhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHH------------------------------
Confidence 34556679999999999999999999999999999999999988888663
Q ss_pred hhhhhhhccccceeeeeeeehheecc-cceEEEeeccceeecchhhHHhhc
Q psy12535 120 LSLVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQLLAS 169 (209)
Q Consensus 120 ~~~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l~~~ 169 (209)
++.....|+|||++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 215 ---l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 262 (340)
T PRK13536 215 ---LRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDE 262 (340)
T ss_pred ---HHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 33333358999999999999864 899999999999999999998764
No 124
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.87 E-value=7.5e-23 Score=178.11 Aligned_cols=101 Identities=26% Similarity=0.414 Sum_probs=84.7
Q ss_pred CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535 36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG 115 (209)
Q Consensus 36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (209)
|+...+...+.+||||||||++|||||+.+|+||||||||++||+.+...+.+.+
T Consensus 149 ~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l------------------------- 203 (269)
T cd03294 149 GLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDEL------------------------- 203 (269)
T ss_pred CCHhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHH-------------------------
Confidence 3444456667799999999999999999999999999999999999888776632
Q ss_pred ccchhhhhhhhcc-ccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhc
Q psy12535 116 VRGALSLVRTSFL-KEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLAS 169 (209)
Q Consensus 116 ~~~~~~~~~~~~~-~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~ 169 (209)
..... .++|||++||+++.+. .+|+|++|++|++++.|+++++.++
T Consensus 204 --------~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 251 (269)
T cd03294 204 --------LRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTN 251 (269)
T ss_pred --------HHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHhC
Confidence 22222 3789999999999875 5899999999999999999988754
No 125
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.87 E-value=7.6e-23 Score=185.01 Aligned_cols=102 Identities=27% Similarity=0.500 Sum_probs=86.5
Q ss_pred CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535 36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG 115 (209)
Q Consensus 36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (209)
|+.......+.+|||||||||+|||||+.+|++|||||||++||+.++..+++.+
T Consensus 117 gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L------------------------- 171 (352)
T PRK11144 117 GIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYL------------------------- 171 (352)
T ss_pred CCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHH-------------------------
Confidence 4455566777899999999999999999999999999999999999888776632
Q ss_pred ccchhhhhhhhccc-cceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhcc
Q psy12535 116 VRGALSLVRTSFLK-EKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLASG 170 (209)
Q Consensus 116 ~~~~~~~~~~~~~~-~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~~ 170 (209)
+....+ ++|+|+|||+++.+. .+|+|++|++|++++.|+++++..+.
T Consensus 172 --------~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~~p 220 (352)
T PRK11144 172 --------ERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWASS 220 (352)
T ss_pred --------HHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHhCc
Confidence 222223 789999999999875 48999999999999999999997654
No 126
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=8.2e-23 Score=179.44 Aligned_cols=101 Identities=20% Similarity=0.446 Sum_probs=85.7
Q ss_pred CCc-eeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccc
Q psy12535 36 GDR-TLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSAL 114 (209)
Q Consensus 36 g~~-t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (209)
|++ ......+.+||||||||++|||||+.+|+||||||||++||+.+...+.+.
T Consensus 133 gL~~~~~~~~~~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~------------------------- 187 (286)
T PRK13646 133 GFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRL------------------------- 187 (286)
T ss_pred CCChhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHH-------------------------
Confidence 554 345667889999999999999999999999999999999999988887663
Q ss_pred cccchhhhhhhhcc-ccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhc
Q psy12535 115 GVRGALSLVRTSFL-KEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLAS 169 (209)
Q Consensus 115 ~~~~~~~~~~~~~~-~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~ 169 (209)
++.... .++|||+|||+++.+. .+|+|++|++|++++.|+++++...
T Consensus 188 --------l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 236 (286)
T PRK13646 188 --------LKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFKD 236 (286)
T ss_pred --------HHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 333332 4789999999999875 5899999999999999999988764
No 127
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.87 E-value=9.1e-23 Score=174.94 Aligned_cols=97 Identities=26% Similarity=0.432 Sum_probs=83.8
Q ss_pred eeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccc
Q psy12535 39 TLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRG 118 (209)
Q Consensus 39 t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (209)
+.+...+.+||||||||++|||||+.+|++|||||||++||+.+...+.+.
T Consensus 138 ~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~----------------------------- 188 (250)
T PRK14245 138 DKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEEL----------------------------- 188 (250)
T ss_pred hhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHH-----------------------------
Confidence 345667789999999999999999999999999999999999988887663
Q ss_pred hhhhhhhhccccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhc
Q psy12535 119 ALSLVRTSFLKEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLAS 169 (209)
Q Consensus 119 ~~~~~~~~~~~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~ 169 (209)
+++. .+++|||++||+++.+. .+|+|++|++|++++.|+++++.++
T Consensus 189 ----l~~~-~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~~~~~ 235 (250)
T PRK14245 189 ----IHEL-KKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKIFTN 235 (250)
T ss_pred ----HHHH-hcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHHHhcC
Confidence 3333 24689999999999875 5899999999999999999998754
No 128
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=8.8e-23 Score=177.51 Aligned_cols=97 Identities=24% Similarity=0.388 Sum_probs=82.9
Q ss_pred eecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccch
Q psy12535 40 LVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGA 119 (209)
Q Consensus 40 ~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (209)
.....+.+||||||||++|||||+.+|+||||||||++||+.+...+.+.
T Consensus 129 ~~~~~~~~LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~------------------------------ 178 (271)
T PRK13638 129 FRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAI------------------------------ 178 (271)
T ss_pred HhcCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHH------------------------------
Confidence 34556779999999999999999999999999999999999988877663
Q ss_pred hhhhhhhccccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhc
Q psy12535 120 LSLVRTSFLKEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLAS 169 (209)
Q Consensus 120 ~~~~~~~~~~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~ 169 (209)
+.+...+++|||++||+++.+. .+|+|++|++|++++.|+++++...
T Consensus 179 ---l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (271)
T PRK13638 179 ---IRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFAC 226 (271)
T ss_pred ---HHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 2232334789999999999985 5899999999999999999888654
No 129
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=7.9e-23 Score=175.37 Aligned_cols=100 Identities=23% Similarity=0.359 Sum_probs=85.6
Q ss_pred CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535 36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG 115 (209)
Q Consensus 36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (209)
|+.......+.+||||||||++|||||+.+|++|||||||++||+.+...+.+.+
T Consensus 142 gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L------------------------- 196 (255)
T PRK11300 142 GLLEHANRQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELI------------------------- 196 (255)
T ss_pred ChhhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHH-------------------------
Confidence 5556677888899999999999999999999999999999999999888776632
Q ss_pred ccchhhhhhhhccc-cceeeeeeeehheecc-cceEEEeeccceeecchhhHHhh
Q psy12535 116 VRGALSLVRTSFLK-EKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQLLA 168 (209)
Q Consensus 116 ~~~~~~~~~~~~~~-~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l~~ 168 (209)
.....+ ++|||++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 197 --------~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~ 243 (255)
T PRK11300 197 --------AELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTPEEIRN 243 (255)
T ss_pred --------HHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEecCCHHHHhh
Confidence 222233 7899999999999864 89999999999999999988754
No 130
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.87 E-value=5.4e-23 Score=171.21 Aligned_cols=107 Identities=59% Similarity=1.030 Sum_probs=90.8
Q ss_pred cceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccC
Q psy12535 18 RRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTG 97 (209)
Q Consensus 18 ~~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~ 97 (209)
.++++.+++.+++..+|.|+++.++..+.+||+|||||++||||++.+|+++||||||++||+.+...+++.++.
T Consensus 98 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~----- 172 (204)
T cd03250 98 EKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCIL----- 172 (204)
T ss_pred HHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHH-----
Confidence 344555677778888999999999999999999999999999999999999999999999999887777664322
Q ss_pred CCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeeccc
Q psy12535 98 VPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGS 156 (209)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~ 156 (209)
.....++|||++||+++.+..+|+|++|++|+
T Consensus 173 ---------------------------~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 173 ---------------------------GLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred ---------------------------HhccCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 11234789999999999887799999999985
No 131
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.87 E-value=7.6e-23 Score=177.38 Aligned_cols=97 Identities=26% Similarity=0.364 Sum_probs=83.8
Q ss_pred eecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccch
Q psy12535 40 LVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGA 119 (209)
Q Consensus 40 ~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (209)
.....+..||||||||++|||||+.+|++|||||||++||+.+...+.+.
T Consensus 143 ~~~~~~~~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~------------------------------ 192 (265)
T TIGR02769 143 DADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILEL------------------------------ 192 (265)
T ss_pred hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH------------------------------
Confidence 45667789999999999999999999999999999999999888777663
Q ss_pred hhhhhhhcc-ccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhc
Q psy12535 120 LSLVRTSFL-KEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLAS 169 (209)
Q Consensus 120 ~~~~~~~~~-~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~ 169 (209)
++.... .++|||++||+++.+. .+|++++|++|++++.|+++++...
T Consensus 193 ---l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 241 (265)
T TIGR02769 193 ---LRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEECDVAQLLSF 241 (265)
T ss_pred ---HHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEEECCHHHHcCC
Confidence 222222 3789999999999987 4899999999999999999998764
No 132
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=3.8e-23 Score=188.98 Aligned_cols=102 Identities=24% Similarity=0.409 Sum_probs=84.9
Q ss_pred CceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccc
Q psy12535 37 DRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGV 116 (209)
Q Consensus 37 ~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (209)
+.......+.+|||||||||+|||||+.+|+||||||||++||...+..+.+.+...
T Consensus 139 L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l----------------------- 195 (377)
T PRK11607 139 MQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDI----------------------- 195 (377)
T ss_pred CchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH-----------------------
Confidence 334455667799999999999999999999999999999999999888776543211
Q ss_pred cchhhhhhhhccccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhcc
Q psy12535 117 RGALSLVRTSFLKEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLASG 170 (209)
Q Consensus 117 ~~~~~~~~~~~~~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~~ 170 (209)
. ...+.|+|+|||+++.+. .+|+|++|++|++++.|+++++..+.
T Consensus 196 ------~---~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~p 241 (377)
T PRK11607 196 ------L---ERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHP 241 (377)
T ss_pred ------H---HhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhCC
Confidence 1 123789999999999864 68999999999999999999997653
No 133
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.87 E-value=1e-22 Score=180.31 Aligned_cols=95 Identities=31% Similarity=0.503 Sum_probs=83.7
Q ss_pred cccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhh
Q psy12535 42 GDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALS 121 (209)
Q Consensus 42 g~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (209)
..+..+||+|||||++||+||+.+|++|||||||+|||+.....+++
T Consensus 131 ~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~--------------------------------- 177 (293)
T COG1131 131 NKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWE--------------------------------- 177 (293)
T ss_pred CcchhhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHH---------------------------------
Confidence 45578999999999999999999999999999999999998887766
Q ss_pred hhhhhcccc-ceeeeeeeehheecc-cceEEEeeccceeecchhhHHhhc
Q psy12535 122 LVRTSFLKE-KTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQLLAS 169 (209)
Q Consensus 122 ~~~~~~~~~-~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l~~~ 169 (209)
+++....++ +||+++||.++.+.. ||+|++|++|++++.|+++++...
T Consensus 178 ~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~~ 227 (293)
T COG1131 178 LLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEK 227 (293)
T ss_pred HHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHHh
Confidence 344445555 799999999999876 899999999999999999998765
No 134
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.86 E-value=1.1e-22 Score=175.47 Aligned_cols=98 Identities=22% Similarity=0.412 Sum_probs=84.5
Q ss_pred eeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccc
Q psy12535 39 TLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRG 118 (209)
Q Consensus 39 t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (209)
+.++..+.+|||||||||+|||||+.+|+||||||||++||+.+...+.+.+
T Consensus 143 ~~~~~~~~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l---------------------------- 194 (258)
T PRK11701 143 ARIDDLPTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLL---------------------------- 194 (258)
T ss_pred hHHhCCCccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHH----------------------------
Confidence 4567788999999999999999999999999999999999999888776632
Q ss_pred hhhhhhhhcc-ccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhc
Q psy12535 119 ALSLVRTSFL-KEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLAS 169 (209)
Q Consensus 119 ~~~~~~~~~~-~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~ 169 (209)
+.... .+.|||++||+++.+. .+|+|++|++|++++.|+++++..+
T Consensus 195 -----~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~~ 242 (258)
T PRK11701 195 -----RGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGLTDQVLDD 242 (258)
T ss_pred -----HHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHhcC
Confidence 22222 3789999999999987 5899999999999999999988654
No 135
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=1e-22 Score=178.63 Aligned_cols=101 Identities=23% Similarity=0.340 Sum_probs=85.7
Q ss_pred CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535 36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG 115 (209)
Q Consensus 36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (209)
|+.......+.+||||||||++|||||+.+|+||||||||++||+.+...+++.+
T Consensus 130 gL~~~~~~~~~~LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l------------------------- 184 (283)
T PRK13636 130 GIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLL------------------------- 184 (283)
T ss_pred CChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHH-------------------------
Confidence 3344456677899999999999999999999999999999999999888776632
Q ss_pred ccchhhhhhhhccc-cceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhc
Q psy12535 116 VRGALSLVRTSFLK-EKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLAS 169 (209)
Q Consensus 116 ~~~~~~~~~~~~~~-~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~ 169 (209)
+....+ ++|||++||+++.+. .||+|++|++|++++.|+++++...
T Consensus 185 --------~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 232 (283)
T PRK13636 185 --------VEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE 232 (283)
T ss_pred --------HHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 222323 789999999999986 5899999999999999999998764
No 136
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=7.1e-23 Score=178.91 Aligned_cols=100 Identities=25% Similarity=0.407 Sum_probs=84.5
Q ss_pred CceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccc
Q psy12535 37 DRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGV 116 (209)
Q Consensus 37 ~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (209)
+...+...+.+||||||||++|||||+.+|++|||||||++||+.+...+++.
T Consensus 127 l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~--------------------------- 179 (277)
T PRK13652 127 LEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDF--------------------------- 179 (277)
T ss_pred ChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHH---------------------------
Confidence 33345566779999999999999999999999999999999999988877663
Q ss_pred cchhhhhhhhcc-ccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhc
Q psy12535 117 RGALSLVRTSFL-KEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLAS 169 (209)
Q Consensus 117 ~~~~~~~~~~~~-~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~ 169 (209)
++.... .+.|||++||+++.+. .||+|++|++|++++.|+++++.+.
T Consensus 180 ------l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 228 (277)
T PRK13652 180 ------LNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQ 228 (277)
T ss_pred ------HHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhcC
Confidence 222233 3789999999999985 5899999999999999999998754
No 137
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.86 E-value=1e-22 Score=184.16 Aligned_cols=101 Identities=28% Similarity=0.463 Sum_probs=86.6
Q ss_pred CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535 36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG 115 (209)
Q Consensus 36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (209)
|++...+..+.+|||||||||+|||||+.+|++|||||||++||+.+...+.+.+
T Consensus 120 gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~~~L------------------------- 174 (354)
T TIGR02142 120 GIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYL------------------------- 174 (354)
T ss_pred CChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHH-------------------------
Confidence 4555667778899999999999999999999999999999999999888876633
Q ss_pred ccchhhhhhhhccc-cceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhc
Q psy12535 116 VRGALSLVRTSFLK-EKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLAS 169 (209)
Q Consensus 116 ~~~~~~~~~~~~~~-~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~ 169 (209)
+....+ ++|+|++||+++.+. .+|+|++|++|++++.|+++++...
T Consensus 175 --------~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 222 (354)
T TIGR02142 175 --------ERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWAS 222 (354)
T ss_pred --------HHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHHhcC
Confidence 222333 789999999999876 4899999999999999999998754
No 138
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.86 E-value=1.2e-22 Score=173.92 Aligned_cols=97 Identities=30% Similarity=0.486 Sum_probs=82.6
Q ss_pred eeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccc
Q psy12535 39 TLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRG 118 (209)
Q Consensus 39 t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (209)
..+...+.+||||||||++|||||+.+|++|||||||++||+.+...+++.
T Consensus 136 ~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~----------------------------- 186 (247)
T TIGR00972 136 DRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEEL----------------------------- 186 (247)
T ss_pred hHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH-----------------------------
Confidence 345667789999999999999999999999999999999999988877663
Q ss_pred hhhhhhhhccccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhc
Q psy12535 119 ALSLVRTSFLKEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLAS 169 (209)
Q Consensus 119 ~~~~~~~~~~~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~ 169 (209)
++... +++|||++||+++.+. .+|+|++|++|++++.|+++++..+
T Consensus 187 ----l~~~~-~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 233 (247)
T TIGR00972 187 ----IQELK-KKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIFTN 233 (247)
T ss_pred ----HHHHH-hcCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 22222 2479999999999876 5899999999999999999988654
No 139
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=4.7e-23 Score=180.54 Aligned_cols=100 Identities=27% Similarity=0.441 Sum_probs=84.8
Q ss_pred CceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccc
Q psy12535 37 DRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGV 116 (209)
Q Consensus 37 ~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (209)
+...+...+..|||||||||+|||||+.+|+||||||||++||+.+...+++.
T Consensus 130 L~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~--------------------------- 182 (279)
T PRK13635 130 MEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLET--------------------------- 182 (279)
T ss_pred ChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHH---------------------------
Confidence 33444556679999999999999999999999999999999999988888763
Q ss_pred cchhhhhhhhccc-cceeeeeeeehheecccceEEEeeccceeecchhhHHhhc
Q psy12535 117 RGALSLVRTSFLK-EKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLAS 169 (209)
Q Consensus 117 ~~~~~~~~~~~~~-~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~~~ 169 (209)
++....+ +.|||++||+++.+..||+|++|++|++++.|+++++...
T Consensus 183 ------l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13635 183 ------VRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFKS 230 (279)
T ss_pred ------HHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHhcC
Confidence 2232333 7899999999998878999999999999999999888654
No 140
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.86 E-value=2.5e-23 Score=174.43 Aligned_cols=103 Identities=27% Similarity=0.463 Sum_probs=88.2
Q ss_pred CCCcceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhcc
Q psy12535 15 PNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGL 94 (209)
Q Consensus 15 ~~~~~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~ 94 (209)
++..++++.++|.+....+|. +||||||||++||||++++|++||.||||.+|||.....++.
T Consensus 116 ~rV~~~L~~VgL~~k~~~lP~-----------~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~------ 178 (223)
T COG2884 116 RRVSEVLDLVGLKHKARALPS-----------QLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMR------ 178 (223)
T ss_pred HHHHHHHHHhccchhhhcCcc-----------ccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHH------
Confidence 344556677777777777776 999999999999999999999999999999999998887766
Q ss_pred ccCCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheeccc-ceEEEeeccceeecc
Q psy12535 95 HTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHV-DHVMLLEKGSVEAFG 161 (209)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~-DrV~~L~~G~i~~~G 161 (209)
++.+..+.|.|||++|||.+.+... .|++.|++|+++...
T Consensus 179 ---------------------------lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~ 219 (223)
T COG2884 179 ---------------------------LFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDE 219 (223)
T ss_pred ---------------------------HHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEecc
Confidence 4445566799999999999999875 899999999998654
No 141
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.86 E-value=1.1e-22 Score=176.96 Aligned_cols=100 Identities=23% Similarity=0.299 Sum_probs=84.3
Q ss_pred CceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccc
Q psy12535 37 DRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGV 116 (209)
Q Consensus 37 ~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (209)
+.......+.+||||||||++|||||+.+|++|||||||++||+.+...+.+.
T Consensus 133 l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~--------------------------- 185 (269)
T PRK11831 133 LRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKL--------------------------- 185 (269)
T ss_pred ChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHH---------------------------
Confidence 33445566789999999999999999999999999999999999988877663
Q ss_pred cchhhhhhhhcc-ccceeeeeeeehheecc-cceEEEeeccceeecchhhHHhhc
Q psy12535 117 RGALSLVRTSFL-KEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQLLAS 169 (209)
Q Consensus 117 ~~~~~~~~~~~~-~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l~~~ 169 (209)
++.... .++|||++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 186 ------l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 234 (269)
T PRK11831 186 ------ISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQAN 234 (269)
T ss_pred ------HHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHHhcC
Confidence 222222 37899999999998765 899999999999999999998754
No 142
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.86 E-value=1.3e-22 Score=174.79 Aligned_cols=101 Identities=33% Similarity=0.545 Sum_probs=85.0
Q ss_pred CCceee-cccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccc
Q psy12535 36 GDRTLV-GDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSAL 114 (209)
Q Consensus 36 g~~t~v-g~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (209)
|+.... ...+.+||||||||++|||||+.+|++|||||||++||+.+...+.+.
T Consensus 140 gl~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~------------------------- 194 (257)
T PRK10619 140 GIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRI------------------------- 194 (257)
T ss_pred CCChhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH-------------------------
Confidence 344333 566789999999999999999999999999999999999988887663
Q ss_pred cccchhhhhhhhccccceeeeeeeehheecc-cceEEEeeccceeecchhhHHhhc
Q psy12535 115 GVRGALSLVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQLLAS 169 (209)
Q Consensus 115 ~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l~~~ 169 (209)
+++....++|||+|||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 195 --------l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 242 (257)
T PRK10619 195 --------MQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQLFGN 242 (257)
T ss_pred --------HHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHhhhC
Confidence 22333358999999999999875 899999999999999999988643
No 143
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.86 E-value=6.2e-23 Score=170.97 Aligned_cols=88 Identities=32% Similarity=0.509 Sum_probs=73.8
Q ss_pred ceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccccc
Q psy12535 38 RTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVR 117 (209)
Q Consensus 38 ~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (209)
...+...+.+||||||||++|||||+.+|++|||||||++||+.+...+.+.
T Consensus 117 ~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~---------------------------- 168 (205)
T cd03226 117 YALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGEL---------------------------- 168 (205)
T ss_pred chhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHH----------------------------
Confidence 3344556679999999999999999999999999999999999988877663
Q ss_pred chhhhhhhhccccceeeeeeeehheec-ccceEEEeecccee
Q psy12535 118 GALSLVRTSFLKEKTVMLITHQIQYLT-HVDHVMLLEKGSVE 158 (209)
Q Consensus 118 ~~~~~~~~~~~~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~ 158 (209)
++....+++|||++||+++.+. .+|+|++|++|+++
T Consensus 169 -----l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 169 -----IRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred -----HHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 2232335789999999999886 48999999999874
No 144
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=1.2e-22 Score=172.64 Aligned_cols=94 Identities=22% Similarity=0.358 Sum_probs=81.1
Q ss_pred cccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhh
Q psy12535 42 GDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALS 121 (209)
Q Consensus 42 g~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (209)
...+.+||||||||++|||||+.+|+||||||||++||+.+...+.+.
T Consensus 132 ~~~~~~LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~-------------------------------- 179 (237)
T PRK11614 132 IQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDT-------------------------------- 179 (237)
T ss_pred hCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHH--------------------------------
Confidence 456678999999999999999999999999999999999988877663
Q ss_pred hhhhhccccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhh
Q psy12535 122 LVRTSFLKEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLA 168 (209)
Q Consensus 122 ~~~~~~~~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~ 168 (209)
++....+++|||++||+++.+. .+|++++|++|++++.|+++++..
T Consensus 180 -l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (237)
T PRK11614 180 -IEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLA 226 (237)
T ss_pred -HHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhc
Confidence 2222335889999999999765 589999999999999999998864
No 145
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.86 E-value=1.4e-22 Score=172.60 Aligned_cols=99 Identities=22% Similarity=0.358 Sum_probs=84.8
Q ss_pred CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535 36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG 115 (209)
Q Consensus 36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (209)
|++......+..|||||+||++||||++.+|++|||||||++||+.+...+.+.
T Consensus 132 ~l~~~~~~~~~~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~-------------------------- 185 (242)
T TIGR03411 132 GLADEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAEL-------------------------- 185 (242)
T ss_pred CCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHH--------------------------
Confidence 455556777889999999999999999999999999999999999988887663
Q ss_pred ccchhhhhhhhccccceeeeeeeehheecc-cceEEEeeccceeecchhhHHhh
Q psy12535 116 VRGALSLVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQLLA 168 (209)
Q Consensus 116 ~~~~~~~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l~~ 168 (209)
++... +++|||++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 186 -------l~~~~-~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~ 231 (242)
T TIGR03411 186 -------LKSLA-GKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQVQA 231 (242)
T ss_pred -------HHHHh-cCCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHHHhc
Confidence 22222 36899999999999864 89999999999999999988754
No 146
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.86 E-value=1.2e-22 Score=187.26 Aligned_cols=98 Identities=33% Similarity=0.481 Sum_probs=83.8
Q ss_pred eeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccc
Q psy12535 39 TLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRG 118 (209)
Q Consensus 39 t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (209)
........+||||||||++|||||+++|+||||||||++||+.++..+++
T Consensus 131 ~~~~~~~~~LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~------------------------------ 180 (402)
T PRK09536 131 QFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLE------------------------------ 180 (402)
T ss_pred hhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHH------------------------------
Confidence 33455667999999999999999999999999999999999988877765
Q ss_pred hhhhhhhhccccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhc
Q psy12535 119 ALSLVRTSFLKEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLAS 169 (209)
Q Consensus 119 ~~~~~~~~~~~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~ 169 (209)
+++++...++|||++||+++.+. .||++++|++|++++.|++++++..
T Consensus 181 ---lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~~~ 229 (402)
T PRK09536 181 ---LVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLTA 229 (402)
T ss_pred ---HHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHhCc
Confidence 33333335789999999999985 5899999999999999999997653
No 147
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=5.7e-23 Score=180.08 Aligned_cols=101 Identities=25% Similarity=0.408 Sum_probs=85.5
Q ss_pred CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535 36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG 115 (209)
Q Consensus 36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (209)
|+...+...+.+|||||+||++|||||+.+|++|||||||++||+.+...+.+.+
T Consensus 132 ~L~~~~~~~~~~LS~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l------------------------- 186 (282)
T PRK13640 132 GMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLI------------------------- 186 (282)
T ss_pred CChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHH-------------------------
Confidence 3344456667799999999999999999999999999999999999888876632
Q ss_pred ccchhhhhhhhcc-ccceeeeeeeehheecccceEEEeeccceeecchhhHHhhc
Q psy12535 116 VRGALSLVRTSFL-KEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLAS 169 (209)
Q Consensus 116 ~~~~~~~~~~~~~-~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~~~ 169 (209)
..... .++|||++||+++.+..||++++|++|++++.|+++++...
T Consensus 187 --------~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 233 (282)
T PRK13640 187 --------RKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIFSK 233 (282)
T ss_pred --------HHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 22222 37899999999998877999999999999999999988653
No 148
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.86 E-value=1.1e-22 Score=171.29 Aligned_cols=96 Identities=36% Similarity=0.478 Sum_probs=79.5
Q ss_pred CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535 36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG 115 (209)
Q Consensus 36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (209)
|+...+.....+||||||||++|||||+.+|++|||||||++||+.+...+++.
T Consensus 120 ~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~-------------------------- 173 (220)
T cd03293 120 GLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEE-------------------------- 173 (220)
T ss_pred CChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHH--------------------------
Confidence 344455666789999999999999999999999999999999999988888663
Q ss_pred ccchhhhhhhhcc-ccceeeeeeeehheec-ccceEEEee--ccceeecchhh
Q psy12535 116 VRGALSLVRTSFL-KEKTVMLITHQIQYLT-HVDHVMLLE--KGSVEAFGTTT 164 (209)
Q Consensus 116 ~~~~~~~~~~~~~-~~~TiIvitH~l~~l~-~~DrV~~L~--~G~i~~~G~~~ 164 (209)
+++... .++|||++||+++.+. .||++++|+ +|++++.++.+
T Consensus 174 -------l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~~ 219 (220)
T cd03293 174 -------LLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEVD 219 (220)
T ss_pred -------HHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEec
Confidence 222222 3789999999999875 589999999 79999887653
No 149
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=5.5e-23 Score=189.35 Aligned_cols=101 Identities=26% Similarity=0.444 Sum_probs=85.4
Q ss_pred CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535 36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG 115 (209)
Q Consensus 36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (209)
|++......+.+|||||||||+|||||+.+|+||||||||++||+.+...+.+.+
T Consensus 153 gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L------------------------- 207 (400)
T PRK10070 153 GLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDEL------------------------- 207 (400)
T ss_pred CCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHH-------------------------
Confidence 3444556667799999999999999999999999999999999999888886643
Q ss_pred ccchhhhhhhhcc-ccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhc
Q psy12535 116 VRGALSLVRTSFL-KEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLAS 169 (209)
Q Consensus 116 ~~~~~~~~~~~~~-~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~ 169 (209)
..... .++|||++||+++.+. .+|+|++|++|++++.|+++++...
T Consensus 208 --------~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~g~~~~l~~~ 255 (400)
T PRK10070 208 --------VKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNN 255 (400)
T ss_pred --------HHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEecCCHHHHHhC
Confidence 22222 4789999999999875 5899999999999999999998764
No 150
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.86 E-value=1e-22 Score=170.68 Aligned_cols=88 Identities=22% Similarity=0.399 Sum_probs=73.7
Q ss_pred CceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccc
Q psy12535 37 DRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGV 116 (209)
Q Consensus 37 ~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (209)
+.......+.+|||||||||+|||||+.+|++|||||||++||+.+...+.+.
T Consensus 128 l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~--------------------------- 180 (216)
T TIGR00960 128 LEGKAHALPMQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRL--------------------------- 180 (216)
T ss_pred ChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHH---------------------------
Confidence 33445556679999999999999999999999999999999999988887663
Q ss_pred cchhhhhhhhccccceeeeeeeehheecc-cceEEEeeccce
Q psy12535 117 RGALSLVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGSV 157 (209)
Q Consensus 117 ~~~~~~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i 157 (209)
+.....+++|||+|||+++.+.. ||+|++|++|+|
T Consensus 181 ------l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 181 ------FEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred ------HHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 22223347899999999998874 899999999975
No 151
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.86 E-value=1.9e-22 Score=173.32 Aligned_cols=96 Identities=27% Similarity=0.415 Sum_probs=82.6
Q ss_pred ecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchh
Q psy12535 41 VGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGAL 120 (209)
Q Consensus 41 vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (209)
....+.+|||||||||+|||||+.+|++|||||||++||+.+...+++.
T Consensus 144 ~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~------------------------------- 192 (254)
T PRK14273 144 LNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEEL------------------------------- 192 (254)
T ss_pred HhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHH-------------------------------
Confidence 3556789999999999999999999999999999999999988887663
Q ss_pred hhhhhhccccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhcc
Q psy12535 121 SLVRTSFLKEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLASG 170 (209)
Q Consensus 121 ~~~~~~~~~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~~ 170 (209)
++... +++|||++||+++.+. .+|+|++|++|++++.|+++++..+.
T Consensus 193 --l~~~~-~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 240 (254)
T PRK14273 193 --IINLK-ESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDELFFNP 240 (254)
T ss_pred --HHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCC
Confidence 22322 3689999999999875 48999999999999999999987543
No 152
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.86 E-value=8.7e-23 Score=173.65 Aligned_cols=98 Identities=30% Similarity=0.474 Sum_probs=81.6
Q ss_pred CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535 36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG 115 (209)
Q Consensus 36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (209)
|+.......+.+||||||||++|||||+.+|++|||||||++||+.+...+.+.+
T Consensus 103 ~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l------------------------- 157 (230)
T TIGR01184 103 GLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEEL------------------------- 157 (230)
T ss_pred CCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHH-------------------------
Confidence 3344455667899999999999999999999999999999999999888876632
Q ss_pred ccchhhhhhhhcc-ccceeeeeeeehheec-ccceEEEeeccceeecchhhHH
Q psy12535 116 VRGALSLVRTSFL-KEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQL 166 (209)
Q Consensus 116 ~~~~~~~~~~~~~-~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l 166 (209)
.+... .++|||+|||+++.+. .+|+|++|++|++++.|+..++
T Consensus 158 --------~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 202 (230)
T TIGR01184 158 --------MQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILEV 202 (230)
T ss_pred --------HHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEecccCceec
Confidence 22223 3789999999999876 4899999999999998876655
No 153
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.86 E-value=1.3e-22 Score=185.86 Aligned_cols=101 Identities=27% Similarity=0.463 Sum_probs=85.5
Q ss_pred CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535 36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG 115 (209)
Q Consensus 36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (209)
|+.......+.+||||||||++|||||+.+|+||||||||++||+.+...+.+.+.
T Consensus 153 gL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlDEPts~LD~~~r~~l~~~L~------------------------ 208 (382)
T TIGR03415 153 GLAQWADKKPGELSGGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELL------------------------ 208 (382)
T ss_pred CCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHH------------------------
Confidence 34444556677999999999999999999999999999999999998888876432
Q ss_pred ccchhhhhhhhcc-ccceeeeeeeehhee-cccceEEEeeccceeecchhhHHhhc
Q psy12535 116 VRGALSLVRTSFL-KEKTVMLITHQIQYL-THVDHVMLLEKGSVEAFGTTTQLLAS 169 (209)
Q Consensus 116 ~~~~~~~~~~~~~-~~~TiIvitH~l~~l-~~~DrV~~L~~G~i~~~G~~~~l~~~ 169 (209)
.... .++|||+|||+++.+ +.+|+|++|++|++++.|+++++..+
T Consensus 209 ---------~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~~ 255 (382)
T TIGR03415 209 ---------ELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLN 255 (382)
T ss_pred ---------HHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhhC
Confidence 2222 378999999999986 45899999999999999999999754
No 154
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.86 E-value=1.2e-22 Score=170.34 Aligned_cols=93 Identities=28% Similarity=0.529 Sum_probs=78.7
Q ss_pred CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535 36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG 115 (209)
Q Consensus 36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (209)
|+...+...+.+||||||||++|||||+.+|++|||||||++||+.+...+.+.
T Consensus 120 ~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~-------------------------- 173 (214)
T cd03297 120 GLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPE-------------------------- 173 (214)
T ss_pred CCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH--------------------------
Confidence 455556777889999999999999999999999999999999999988877663
Q ss_pred ccchhhhhhhhccc-cceeeeeeeehheec-ccceEEEeeccceeecc
Q psy12535 116 VRGALSLVRTSFLK-EKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFG 161 (209)
Q Consensus 116 ~~~~~~~~~~~~~~-~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G 161 (209)
+++...+ ++|||++||+++.+. .+|++++|++|++++.|
T Consensus 174 -------l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 174 -------LKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred -------HHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 2232233 789999999999886 58999999999998765
No 155
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.86 E-value=1e-22 Score=177.98 Aligned_cols=95 Identities=26% Similarity=0.428 Sum_probs=82.9
Q ss_pred cceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhhh
Q psy12535 44 KGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLV 123 (209)
Q Consensus 44 ~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (209)
.+.+|||||+||++|||||+.+|+++++|||+|+||...+.++... +
T Consensus 106 yPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnL---------------------------------L 152 (268)
T COG4608 106 YPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNL---------------------------------L 152 (268)
T ss_pred CCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHH---------------------------------H
Confidence 3349999999999999999999999999999999999888777652 2
Q ss_pred hhhc-cccceeeeeeeehheecc-cceEEEeeccceeecchhhHHhhccC
Q psy12535 124 RTSF-LKEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQLLASGL 171 (209)
Q Consensus 124 ~~~~-~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l~~~~~ 171 (209)
.... ..+.|.++||||++.+++ +|||++|..|+|++.|+.++++.+..
T Consensus 153 ~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g~~~~~~~~p~ 202 (268)
T COG4608 153 KDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFSNPL 202 (268)
T ss_pred HHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCceeEecCHHHHhhCCC
Confidence 2322 348899999999999987 79999999999999999999998654
No 156
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.86 E-value=1.5e-22 Score=172.54 Aligned_cols=100 Identities=26% Similarity=0.372 Sum_probs=84.3
Q ss_pred CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535 36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG 115 (209)
Q Consensus 36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (209)
|+..........|||||+||++||||++.+|++|||||||++||+.+...+.+.
T Consensus 126 ~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~-------------------------- 179 (241)
T PRK10895 126 HIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRI-------------------------- 179 (241)
T ss_pred CCHHHhhcchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH--------------------------
Confidence 445556677889999999999999999999999999999999999888777552
Q ss_pred ccchhhhhhhhccccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhh
Q psy12535 116 VRGALSLVRTSFLKEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLA 168 (209)
Q Consensus 116 ~~~~~~~~~~~~~~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~ 168 (209)
+......++|||++||+++.+. .+|+|++|++|++++.|+++++..
T Consensus 180 -------l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 226 (241)
T PRK10895 180 -------IEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQ 226 (241)
T ss_pred -------HHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhc
Confidence 2222335789999999998775 589999999999999999988764
No 157
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=1.3e-22 Score=172.98 Aligned_cols=99 Identities=23% Similarity=0.407 Sum_probs=84.7
Q ss_pred CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535 36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG 115 (209)
Q Consensus 36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (209)
|++..+...+.+||||||||++|||||+.+|++|||||||++||+.+...+.+.
T Consensus 130 gl~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~-------------------------- 183 (242)
T PRK11124 130 RLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSI-------------------------- 183 (242)
T ss_pred CChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHH--------------------------
Confidence 555666777889999999999999999999999999999999999888777662
Q ss_pred ccchhhhhhhhccccceeeeeeeehheec-ccceEEEeeccceeecchhhHHh
Q psy12535 116 VRGALSLVRTSFLKEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLL 167 (209)
Q Consensus 116 ~~~~~~~~~~~~~~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~ 167 (209)
++.....++|+|++||+++.+. .+|++++|++|++++.|+++++.
T Consensus 184 -------l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~ 229 (242)
T PRK11124 184 -------IRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCFT 229 (242)
T ss_pred -------HHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHhc
Confidence 2232334789999999999986 48999999999999999988764
No 158
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.86 E-value=1.5e-22 Score=172.90 Aligned_cols=96 Identities=27% Similarity=0.466 Sum_probs=82.0
Q ss_pred eecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccch
Q psy12535 40 LVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGA 119 (209)
Q Consensus 40 ~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (209)
.....+.+|||||||||+|||||+.+|++|||||||++||+.+...+.+.+
T Consensus 128 ~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L----------------------------- 178 (242)
T cd03295 128 FADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEF----------------------------- 178 (242)
T ss_pred HHhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHH-----------------------------
Confidence 456677899999999999999999999999999999999998887776632
Q ss_pred hhhhhhhcc-ccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhh
Q psy12535 120 LSLVRTSFL-KEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLA 168 (209)
Q Consensus 120 ~~~~~~~~~-~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~ 168 (209)
..... .++|||++||+++.+. .+|+|++|++|++++.|+++++..
T Consensus 179 ----~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 225 (242)
T cd03295 179 ----KRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILR 225 (242)
T ss_pred ----HHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHc
Confidence 22222 3789999999999865 589999999999999999888754
No 159
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.86 E-value=1.7e-22 Score=173.38 Aligned_cols=96 Identities=27% Similarity=0.440 Sum_probs=82.5
Q ss_pred eecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccch
Q psy12535 40 LVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGA 119 (209)
Q Consensus 40 ~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (209)
.++..+.+|||||||||+|||||+.+|+||||||||++||+.+...+.+.
T Consensus 142 ~~~~~~~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~------------------------------ 191 (253)
T PRK14242 142 RLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEEL------------------------------ 191 (253)
T ss_pred HhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH------------------------------
Confidence 44667789999999999999999999999999999999999988777663
Q ss_pred hhhhhhhccccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhc
Q psy12535 120 LSLVRTSFLKEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLAS 169 (209)
Q Consensus 120 ~~~~~~~~~~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~ 169 (209)
++.. .+++|||++||+++.+. .+|+|++|++|++++.|+++++...
T Consensus 192 ---l~~~-~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 238 (253)
T PRK14242 192 ---IHEL-KARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQIFTR 238 (253)
T ss_pred ---HHHH-hcCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHHHHHcC
Confidence 2232 23689999999999885 5899999999999999999988653
No 160
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=1.6e-22 Score=171.59 Aligned_cols=101 Identities=27% Similarity=0.485 Sum_probs=85.0
Q ss_pred CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535 36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG 115 (209)
Q Consensus 36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (209)
|++..+......||||||||++||||++.+|++|||||||++||+.++..+.+.
T Consensus 118 ~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~-------------------------- 171 (232)
T PRK10771 118 GIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTL-------------------------- 171 (232)
T ss_pred CcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH--------------------------
Confidence 344455666679999999999999999999999999999999999988877663
Q ss_pred ccchhhhhhhhcc-ccceeeeeeeehheecc-cceEEEeeccceeecchhhHHhhc
Q psy12535 116 VRGALSLVRTSFL-KEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQLLAS 169 (209)
Q Consensus 116 ~~~~~~~~~~~~~-~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l~~~ 169 (209)
+..... .++|+|++||+++.+.. +|+|++|++|++++.|+++++..+
T Consensus 172 -------l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~~ 220 (232)
T PRK10771 172 -------VSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLSG 220 (232)
T ss_pred -------HHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 222222 37899999999998765 799999999999999999988754
No 161
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=2e-22 Score=175.79 Aligned_cols=97 Identities=26% Similarity=0.421 Sum_probs=83.2
Q ss_pred eecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccch
Q psy12535 40 LVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGA 119 (209)
Q Consensus 40 ~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (209)
.....+.+||||||||++|||||+.+|++|||||||++||+.+...+.+.
T Consensus 138 ~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~------------------------------ 187 (280)
T PRK13649 138 LFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTL------------------------------ 187 (280)
T ss_pred hhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHH------------------------------
Confidence 44667789999999999999999999999999999999999988877663
Q ss_pred hhhhhhhccccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhc
Q psy12535 120 LSLVRTSFLKEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLAS 169 (209)
Q Consensus 120 ~~~~~~~~~~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~ 169 (209)
+......++|||++||+++.+. .+|+|++|++|++++.|+++++...
T Consensus 188 ---l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 235 (280)
T PRK13649 188 ---FKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDIFQD 235 (280)
T ss_pred ---HHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 2222234789999999999886 4899999999999999999988654
No 162
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=1.8e-22 Score=176.40 Aligned_cols=97 Identities=23% Similarity=0.384 Sum_probs=83.7
Q ss_pred eecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccch
Q psy12535 40 LVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGA 119 (209)
Q Consensus 40 ~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (209)
.....+..|||||+||++|||||+.+|++|||||||++||+.+...+.+.+
T Consensus 133 ~~~~~~~~LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l----------------------------- 183 (277)
T PRK13642 133 FKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVI----------------------------- 183 (277)
T ss_pred HhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHH-----------------------------
Confidence 344566799999999999999999999999999999999999888886632
Q ss_pred hhhhhhhccc-cceeeeeeeehheecccceEEEeeccceeecchhhHHhhc
Q psy12535 120 LSLVRTSFLK-EKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLAS 169 (209)
Q Consensus 120 ~~~~~~~~~~-~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~~~ 169 (209)
.....+ ++|||++||+++.+..+|+|++|++|++++.|+++++...
T Consensus 184 ----~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (277)
T PRK13642 184 ----HEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFAT 230 (277)
T ss_pred ----HHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 222333 7899999999999877999999999999999999998754
No 163
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=1.8e-22 Score=177.14 Aligned_cols=97 Identities=22% Similarity=0.423 Sum_probs=82.5
Q ss_pred eecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccch
Q psy12535 40 LVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGA 119 (209)
Q Consensus 40 ~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (209)
.....+.+||||||||++|||||+.+|+||||||||++||+.+...+++.
T Consensus 143 ~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~------------------------------ 192 (289)
T PRK13645 143 YVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINL------------------------------ 192 (289)
T ss_pred HhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHH------------------------------
Confidence 34567789999999999999999999999999999999999988777663
Q ss_pred hhhhhhhcc-ccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhc
Q psy12535 120 LSLVRTSFL-KEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLAS 169 (209)
Q Consensus 120 ~~~~~~~~~-~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~ 169 (209)
++.... .++|||+|||+++.+. .||+|++|++|++++.|+++++.++
T Consensus 193 ---l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 241 (289)
T PRK13645 193 ---FERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEIFSN 241 (289)
T ss_pred ---HHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 222222 3789999999999875 5899999999999999999887653
No 164
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.86 E-value=1.7e-22 Score=173.49 Aligned_cols=101 Identities=27% Similarity=0.457 Sum_probs=85.4
Q ss_pred CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535 36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG 115 (209)
Q Consensus 36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (209)
|++..+...+.+|||||+||++|||||+.+|++|||||||++||+.+...+++.
T Consensus 135 gl~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~-------------------------- 188 (252)
T TIGR03005 135 GLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNV-------------------------- 188 (252)
T ss_pred CChhHhhcChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHH--------------------------
Confidence 445556677789999999999999999999999999999999999988877663
Q ss_pred ccchhhhhhhhcc-ccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhc
Q psy12535 116 VRGALSLVRTSFL-KEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLAS 169 (209)
Q Consensus 116 ~~~~~~~~~~~~~-~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~ 169 (209)
++.... .++|+|++||+++.+. .+|++++|++|++++.|+++++...
T Consensus 189 -------l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 237 (252)
T TIGR03005 189 -------IRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKPDEIFRQ 237 (252)
T ss_pred -------HHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHhcC
Confidence 222222 3789999999999885 5899999999999999999988654
No 165
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.86 E-value=1.4e-22 Score=169.27 Aligned_cols=93 Identities=28% Similarity=0.501 Sum_probs=78.0
Q ss_pred CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535 36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG 115 (209)
Q Consensus 36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (209)
|++..+...+.+||||||||++|||||+.+|+++||||||++||+.+...+.+.
T Consensus 119 ~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~-------------------------- 172 (213)
T cd03301 119 QIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAE-------------------------- 172 (213)
T ss_pred CCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH--------------------------
Confidence 444455667789999999999999999999999999999999999988887663
Q ss_pred ccchhhhhhhhcc-ccceeeeeeeehheecc-cceEEEeeccceeecc
Q psy12535 116 VRGALSLVRTSFL-KEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFG 161 (209)
Q Consensus 116 ~~~~~~~~~~~~~-~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G 161 (209)
+++... .++|||++||+++.+.. +|+|++|++|++++.|
T Consensus 173 -------l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 173 -------LKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred -------HHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 222222 37899999999998765 8999999999998765
No 166
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.86 E-value=1.4e-22 Score=170.26 Aligned_cols=90 Identities=23% Similarity=0.440 Sum_probs=76.1
Q ss_pred CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535 36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG 115 (209)
Q Consensus 36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (209)
|++..+...+..|||||||||+|||||+.+|+||||||||++||+.+...+.+.+
T Consensus 130 ~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l------------------------- 184 (221)
T TIGR02211 130 GLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLM------------------------- 184 (221)
T ss_pred CChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHH-------------------------
Confidence 4455566777899999999999999999999999999999999999888876632
Q ss_pred ccchhhhhhhhcc-ccceeeeeeeehheecccceEEEeecccee
Q psy12535 116 VRGALSLVRTSFL-KEKTVMLITHQIQYLTHVDHVMLLEKGSVE 158 (209)
Q Consensus 116 ~~~~~~~~~~~~~-~~~TiIvitH~l~~l~~~DrV~~L~~G~i~ 158 (209)
..... .++|||++||+++.+..+|+|++|++|+++
T Consensus 185 --------~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 185 --------LELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred --------HHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence 22222 378999999999988778999999999875
No 167
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=1.2e-22 Score=176.23 Aligned_cols=98 Identities=30% Similarity=0.353 Sum_probs=82.5
Q ss_pred ceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccccc
Q psy12535 38 RTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVR 117 (209)
Q Consensus 38 ~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (209)
...+.....+|||||||||+|||||+.+|+||||||||++||+.+...+.+.
T Consensus 138 ~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~---------------------------- 189 (265)
T PRK10575 138 KPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLAL---------------------------- 189 (265)
T ss_pred HHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH----------------------------
Confidence 3344556679999999999999999999999999999999999988877663
Q ss_pred chhhhhhhhcc-ccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhh
Q psy12535 118 GALSLVRTSFL-KEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLA 168 (209)
Q Consensus 118 ~~~~~~~~~~~-~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~ 168 (209)
+..... .+.|||++||+++.+. .+|+|++|++|++++.|+++++..
T Consensus 190 -----l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~~~ 237 (265)
T PRK10575 190 -----VHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELMR 237 (265)
T ss_pred -----HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHhcC
Confidence 222222 3789999999999886 589999999999999999988764
No 168
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.86 E-value=1.5e-22 Score=170.28 Aligned_cols=90 Identities=27% Similarity=0.439 Sum_probs=76.6
Q ss_pred eeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccc
Q psy12535 39 TLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRG 118 (209)
Q Consensus 39 t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (209)
..+...+.+||||||||++|||||+.+|+||||||||++||+.+...+.+.
T Consensus 137 ~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~----------------------------- 187 (228)
T cd03257 137 EVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDL----------------------------- 187 (228)
T ss_pred hHhhCCchhcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHH-----------------------------
Confidence 345677789999999999999999999999999999999999988877663
Q ss_pred hhhhhhhhccc-cceeeeeeeehheec-ccceEEEeeccceeecc
Q psy12535 119 ALSLVRTSFLK-EKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFG 161 (209)
Q Consensus 119 ~~~~~~~~~~~-~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G 161 (209)
+.....+ ++|||++||+++.+. .+|+|++|++|++++.|
T Consensus 188 ----l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 188 ----LKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred ----HHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence 2222333 789999999999887 58999999999998654
No 169
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.86 E-value=1.4e-22 Score=169.98 Aligned_cols=89 Identities=27% Similarity=0.455 Sum_probs=75.1
Q ss_pred CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535 36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG 115 (209)
Q Consensus 36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (209)
|++..+...+.+|||||||||+|||||+.+|+||||||||++||+.+...+.+.
T Consensus 129 ~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~-------------------------- 182 (218)
T cd03255 129 GLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMEL-------------------------- 182 (218)
T ss_pred CCchhhhcChhhcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHH--------------------------
Confidence 445555677789999999999999999999999999999999999988777663
Q ss_pred ccchhhhhhhhcc-ccceeeeeeeehheecccceEEEeeccce
Q psy12535 116 VRGALSLVRTSFL-KEKTVMLITHQIQYLTHVDHVMLLEKGSV 157 (209)
Q Consensus 116 ~~~~~~~~~~~~~-~~~TiIvitH~l~~l~~~DrV~~L~~G~i 157 (209)
+..... .++|||++||+++.+..||+|++|++|++
T Consensus 183 -------l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 183 -------LRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218 (218)
T ss_pred -------HHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence 233233 37899999999998877899999999975
No 170
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.86 E-value=1.5e-22 Score=174.88 Aligned_cols=97 Identities=27% Similarity=0.462 Sum_probs=82.2
Q ss_pred CceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccc
Q psy12535 37 DRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGV 116 (209)
Q Consensus 37 ~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (209)
+...+...+.+|||||||||+|||||+.+|+||||||||++||+.+...+.+.
T Consensus 142 l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~--------------------------- 194 (262)
T PRK09984 142 MVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDT--------------------------- 194 (262)
T ss_pred CHHHHhCCccccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHH---------------------------
Confidence 33345667789999999999999999999999999999999999988887663
Q ss_pred cchhhhhhhhcc-ccceeeeeeeehheec-ccceEEEeeccceeecchhhHH
Q psy12535 117 RGALSLVRTSFL-KEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQL 166 (209)
Q Consensus 117 ~~~~~~~~~~~~-~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l 166 (209)
++.... .++|||++||+++.+. .||+|++|++|++++.|+++++
T Consensus 195 ------l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~ 240 (262)
T PRK09984 195 ------LRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGSSQQF 240 (262)
T ss_pred ------HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHh
Confidence 222222 3789999999999865 5899999999999999999886
No 171
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=2.2e-22 Score=173.20 Aligned_cols=99 Identities=30% Similarity=0.414 Sum_probs=83.6
Q ss_pred CceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccc
Q psy12535 37 DRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGV 116 (209)
Q Consensus 37 ~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (209)
+.......+.+|||||+||++||||++.+|++|||||||++||+.+...+.+.
T Consensus 128 l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~--------------------------- 180 (255)
T PRK11231 128 INHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRL--------------------------- 180 (255)
T ss_pred CHHHHcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH---------------------------
Confidence 33444566779999999999999999999999999999999999988877663
Q ss_pred cchhhhhhhhccccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhh
Q psy12535 117 RGALSLVRTSFLKEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLA 168 (209)
Q Consensus 117 ~~~~~~~~~~~~~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~ 168 (209)
++....+++|||++||+++.+. .+|+|++|++|+++..|+++++..
T Consensus 181 ------l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 227 (255)
T PRK11231 181 ------MRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMT 227 (255)
T ss_pred ------HHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhcC
Confidence 2222334789999999999876 589999999999999999988764
No 172
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.86 E-value=1.4e-22 Score=169.99 Aligned_cols=93 Identities=29% Similarity=0.425 Sum_probs=78.4
Q ss_pred CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535 36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG 115 (209)
Q Consensus 36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (209)
|+...+...+.+||||||||++||||++.+|++|||||||++||+.+...+.+.
T Consensus 125 ~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~-------------------------- 178 (218)
T cd03266 125 GMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREF-------------------------- 178 (218)
T ss_pred CCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHH--------------------------
Confidence 455556677889999999999999999999999999999999999988877663
Q ss_pred ccchhhhhhhhccccceeeeeeeehheecc-cceEEEeeccceeecc
Q psy12535 116 VRGALSLVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFG 161 (209)
Q Consensus 116 ~~~~~~~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G 161 (209)
+.....+++|||+|||+++.+.. +|+|++|++|++++.|
T Consensus 179 -------l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 179 -------IRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred -------HHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 22323357899999999998764 8999999999998754
No 173
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.86 E-value=1.3e-22 Score=169.14 Aligned_cols=93 Identities=24% Similarity=0.314 Sum_probs=77.6
Q ss_pred CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535 36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG 115 (209)
Q Consensus 36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (209)
|+...+...+.+|||||||||+||||++.+|++|||||||++||+.+...+.+.
T Consensus 115 ~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~-------------------------- 168 (208)
T cd03268 115 GLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELREL-------------------------- 168 (208)
T ss_pred CCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHH--------------------------
Confidence 334445666789999999999999999999999999999999999988877663
Q ss_pred ccchhhhhhhhccccceeeeeeeehheec-ccceEEEeeccceeecc
Q psy12535 116 VRGALSLVRTSFLKEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFG 161 (209)
Q Consensus 116 ~~~~~~~~~~~~~~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G 161 (209)
+......++|+|++||+++.+. .+|+|++|++|++++.|
T Consensus 169 -------l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 169 -------ILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred -------HHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 2222235789999999999886 48999999999998764
No 174
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.86 E-value=2.2e-22 Score=173.69 Aligned_cols=96 Identities=27% Similarity=0.429 Sum_probs=82.6
Q ss_pred eecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccch
Q psy12535 40 LVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGA 119 (209)
Q Consensus 40 ~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (209)
.....+.+|||||+|||+|||||+.+|+||||||||++||+.+...+.+.
T Consensus 147 ~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~------------------------------ 196 (258)
T PRK14268 147 RLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDL------------------------------ 196 (258)
T ss_pred hhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHH------------------------------
Confidence 34567789999999999999999999999999999999999988877653
Q ss_pred hhhhhhhccccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhc
Q psy12535 120 LSLVRTSFLKEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLAS 169 (209)
Q Consensus 120 ~~~~~~~~~~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~ 169 (209)
++... +++|||++||+++.+. .||+|++|++|++++.|+++++..+
T Consensus 197 ---l~~l~-~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 243 (258)
T PRK14268 197 ---IMNLK-KDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIFHN 243 (258)
T ss_pred ---HHHHh-hCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 33322 3689999999999875 5899999999999999999988654
No 175
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.86 E-value=1.7e-22 Score=173.83 Aligned_cols=94 Identities=24% Similarity=0.414 Sum_probs=82.4
Q ss_pred ccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhh
Q psy12535 43 DKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSL 122 (209)
Q Consensus 43 ~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (209)
.+..+|||||+|||+|||||+.+|+|+|.|||+++|||.+.+.+++.+...
T Consensus 143 qra~~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~i----------------------------- 193 (258)
T COG3638 143 QRASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDI----------------------------- 193 (258)
T ss_pred HHhccCCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHH-----------------------------
Confidence 456799999999999999999999999999999999999999998853221
Q ss_pred hhhhccccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhh
Q psy12535 123 VRTSFLKEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLA 168 (209)
Q Consensus 123 ~~~~~~~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~ 168 (209)
....|.|+|+..|+++.+. +||||+-|++|+|++.|++.++-.
T Consensus 194 ---n~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfDg~~~el~~ 237 (258)
T COG3638 194 ---NQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGPASELTD 237 (258)
T ss_pred ---HHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEeCChhhhhH
Confidence 1346899999999999976 589999999999999999988644
No 176
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=2.6e-22 Score=174.33 Aligned_cols=98 Identities=29% Similarity=0.439 Sum_probs=83.9
Q ss_pred eecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccch
Q psy12535 40 LVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGA 119 (209)
Q Consensus 40 ~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (209)
.....+.+||||||||++||||++.+|++|||||||++||+.+...+++.
T Consensus 135 ~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~------------------------------ 184 (269)
T PRK13648 135 RADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDL------------------------------ 184 (269)
T ss_pred hhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHH------------------------------
Confidence 44556779999999999999999999999999999999999988887663
Q ss_pred hhhhhhhcc-ccceeeeeeeehheecccceEEEeeccceeecchhhHHhhcc
Q psy12535 120 LSLVRTSFL-KEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASG 170 (209)
Q Consensus 120 ~~~~~~~~~-~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~~~~ 170 (209)
++.... .++|||++||+++.+..+|+|++|++|++++.|+++++..+.
T Consensus 185 ---L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 233 (269)
T PRK13648 185 ---VRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDHA 233 (269)
T ss_pred ---HHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHHhcCH
Confidence 222222 378999999999988779999999999999999999987653
No 177
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.86 E-value=2.8e-22 Score=170.43 Aligned_cols=93 Identities=20% Similarity=0.246 Sum_probs=78.7
Q ss_pred cccce-ecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchh
Q psy12535 42 GDKGV-SLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGAL 120 (209)
Q Consensus 42 g~~g~-~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (209)
..... +|||||||||+|||||+.+|++|||||||++||+.+...+.+.
T Consensus 138 ~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~------------------------------- 186 (243)
T TIGR01978 138 NRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEG------------------------------- 186 (243)
T ss_pred ccccccCcCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHH-------------------------------
Confidence 34444 5999999999999999999999999999999999988877663
Q ss_pred hhhhhhccccceeeeeeeehheecc--cceEEEeeccceeecchhhHHh
Q psy12535 121 SLVRTSFLKEKTVMLITHQIQYLTH--VDHVMLLEKGSVEAFGTTTQLL 167 (209)
Q Consensus 121 ~~~~~~~~~~~TiIvitH~l~~l~~--~DrV~~L~~G~i~~~G~~~~l~ 167 (209)
++....+++|||++||+++.+.. +|+|++|++|++++.|+++++.
T Consensus 187 --l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (243)
T TIGR01978 187 --INRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGDVELAK 233 (243)
T ss_pred --HHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEecCHHHhc
Confidence 22323357899999999999864 6999999999999999987654
No 178
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.86 E-value=2.3e-22 Score=172.55 Aligned_cols=98 Identities=24% Similarity=0.428 Sum_probs=84.5
Q ss_pred eeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccc
Q psy12535 39 TLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRG 118 (209)
Q Consensus 39 t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (209)
+..+..+..|||||||||+|||||+.+|++|||||||++||+.+...+.+.+
T Consensus 140 ~~~~~~~~~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l---------------------------- 191 (253)
T TIGR02323 140 TRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLL---------------------------- 191 (253)
T ss_pred hhhhcCchhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHH----------------------------
Confidence 4567788899999999999999999999999999999999999888876632
Q ss_pred hhhhhhhhcc-ccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhc
Q psy12535 119 ALSLVRTSFL-KEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLAS 169 (209)
Q Consensus 119 ~~~~~~~~~~-~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~ 169 (209)
..... .+.|+|+|||+++.+. .+|++++|++|++++.|+++++...
T Consensus 192 -----~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~~~~~~~~~~~ 239 (253)
T TIGR02323 192 -----RGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGLTDQVLDD 239 (253)
T ss_pred -----HHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEECCHHHHhcC
Confidence 22222 3789999999999987 4899999999999999999888654
No 179
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.86 E-value=3e-22 Score=172.46 Aligned_cols=99 Identities=29% Similarity=0.426 Sum_probs=84.2
Q ss_pred CceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccc
Q psy12535 37 DRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGV 116 (209)
Q Consensus 37 ~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (209)
+.......+.+|||||+||++|||||+.+|+++||||||++||+.+...+.+.
T Consensus 127 l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~--------------------------- 179 (256)
T TIGR03873 127 LSHLADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLAL--------------------------- 179 (256)
T ss_pred cHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHH---------------------------
Confidence 34445667789999999999999999999999999999999999988877663
Q ss_pred cchhhhhhhhccccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhh
Q psy12535 117 RGALSLVRTSFLKEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLA 168 (209)
Q Consensus 117 ~~~~~~~~~~~~~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~ 168 (209)
++....+++|||++||+++.+. .+|+|++|++|++++.|+.+++..
T Consensus 180 ------l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (256)
T TIGR03873 180 ------VRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLT 226 (256)
T ss_pred ------HHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHhhC
Confidence 2232334789999999999985 589999999999999999988764
No 180
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=2e-22 Score=171.13 Aligned_cols=94 Identities=22% Similarity=0.387 Sum_probs=79.5
Q ss_pred CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535 36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG 115 (209)
Q Consensus 36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (209)
|+.......+.+||||||||++||||++.+|+||||||||++||+.+...+.+.
T Consensus 134 gl~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~-------------------------- 187 (233)
T PRK11629 134 GLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQL-------------------------- 187 (233)
T ss_pred CCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH--------------------------
Confidence 445556677789999999999999999999999999999999999988877663
Q ss_pred ccchhhhhhhhcc-ccceeeeeeeehheecccceEEEeeccceeecch
Q psy12535 116 VRGALSLVRTSFL-KEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGT 162 (209)
Q Consensus 116 ~~~~~~~~~~~~~-~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~ 162 (209)
++.... +++|||++||+++.+..+|++++|++|++++.++
T Consensus 188 -------l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 188 -------LGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELS 228 (233)
T ss_pred -------HHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEEEec
Confidence 223222 4789999999999988888999999999987765
No 181
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.86 E-value=3e-22 Score=177.19 Aligned_cols=100 Identities=30% Similarity=0.393 Sum_probs=86.4
Q ss_pred CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535 36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG 115 (209)
Q Consensus 36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (209)
|+.......+..||||||||++|||||+.+|++|||||||+|||+.+.+.+++.
T Consensus 122 gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~-------------------------- 175 (301)
T TIGR03522 122 GLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNV-------------------------- 175 (301)
T ss_pred CCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH--------------------------
Confidence 455556777889999999999999999999999999999999999988877663
Q ss_pred ccchhhhhhhhccccceeeeeeeehheecc-cceEEEeeccceeecchhhHHhhc
Q psy12535 116 VRGALSLVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQLLAS 169 (209)
Q Consensus 116 ~~~~~~~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l~~~ 169 (209)
++... +++|||++||+++.+.. ||+|++|++|++++.|+.+++...
T Consensus 176 -------l~~~~-~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 222 (301)
T TIGR03522 176 -------IKNIG-KDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSAA 222 (301)
T ss_pred -------HHHhc-CCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHHh
Confidence 22222 36899999999998765 899999999999999999998764
No 182
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.86 E-value=2.2e-22 Score=168.99 Aligned_cols=96 Identities=24% Similarity=0.432 Sum_probs=80.8
Q ss_pred CceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccc
Q psy12535 37 DRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGV 116 (209)
Q Consensus 37 ~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (209)
+.........+||+||+||++|||||+.+|++|||||||++||+.+...+.+.+
T Consensus 123 l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l-------------------------- 176 (220)
T cd03263 123 LTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLI-------------------------- 176 (220)
T ss_pred CHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHH--------------------------
Confidence 333445566799999999999999999999999999999999999888876632
Q ss_pred cchhhhhhhhccccceeeeeeeehheecc-cceEEEeeccceeecchhhHH
Q psy12535 117 RGALSLVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQL 166 (209)
Q Consensus 117 ~~~~~~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l 166 (209)
+... +++|||++||+++.+.. +|+|++|++|++++.|+++++
T Consensus 177 -------~~~~-~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 177 -------LEVR-KGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred -------HHHh-cCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 2222 35899999999998864 899999999999999988765
No 183
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=3.2e-22 Score=171.06 Aligned_cols=97 Identities=28% Similarity=0.371 Sum_probs=82.6
Q ss_pred eecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccch
Q psy12535 40 LVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGA 119 (209)
Q Consensus 40 ~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (209)
.....+.+||||||||++||||++.+|++|||||||++||+.+...+.+.
T Consensus 124 ~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~------------------------------ 173 (241)
T PRK14250 124 YATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEEL------------------------------ 173 (241)
T ss_pred HhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH------------------------------
Confidence 34566779999999999999999999999999999999999888777653
Q ss_pred hhhhhhhcc-ccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhc
Q psy12535 120 LSLVRTSFL-KEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLAS 169 (209)
Q Consensus 120 ~~~~~~~~~-~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~ 169 (209)
++.... .++|||++||+++.+. .||+|++|++|++++.|+++++...
T Consensus 174 ---l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (241)
T PRK14250 174 ---IVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTN 222 (241)
T ss_pred ---HHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhcC
Confidence 222222 3789999999999876 4899999999999999999988754
No 184
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.85 E-value=2.9e-22 Score=172.61 Aligned_cols=97 Identities=19% Similarity=0.341 Sum_probs=83.5
Q ss_pred eecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccch
Q psy12535 40 LVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGA 119 (209)
Q Consensus 40 ~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (209)
.++..+.+|||||+|||+|||||+.+|+||||||||++||+.+...+.+.
T Consensus 133 ~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~------------------------------ 182 (254)
T PRK10418 133 VLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDL------------------------------ 182 (254)
T ss_pred hhhcCCcccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHH------------------------------
Confidence 45677889999999999999999999999999999999999888777663
Q ss_pred hhhhhhhcc-ccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhc
Q psy12535 120 LSLVRTSFL-KEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLAS 169 (209)
Q Consensus 120 ~~~~~~~~~-~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~ 169 (209)
++.... .+.|||++||+++.+. .+|+|++|++|++++.|+++++...
T Consensus 183 ---L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 231 (254)
T PRK10418 183 ---LESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLFNA 231 (254)
T ss_pred ---HHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHhhC
Confidence 222222 3789999999999986 5899999999999999999998754
No 185
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=3.1e-22 Score=174.70 Aligned_cols=98 Identities=20% Similarity=0.384 Sum_probs=83.9
Q ss_pred eeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccc
Q psy12535 39 TLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRG 118 (209)
Q Consensus 39 t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (209)
......+.+|||||+||++|||||+.+|++|||||||++||+.++..+.+.
T Consensus 129 ~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~----------------------------- 179 (275)
T PRK13639 129 GFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKL----------------------------- 179 (275)
T ss_pred hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHH-----------------------------
Confidence 344556779999999999999999999999999999999999988887663
Q ss_pred hhhhhhhhccccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhc
Q psy12535 119 ALSLVRTSFLKEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLAS 169 (209)
Q Consensus 119 ~~~~~~~~~~~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~ 169 (209)
+......++|||++||+++.+. .||+|++|++|++++.|+++++...
T Consensus 180 ----l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 227 (275)
T PRK13639 180 ----LYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSD 227 (275)
T ss_pred ----HHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 2232334789999999999876 5899999999999999999998754
No 186
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.85 E-value=2.7e-22 Score=169.29 Aligned_cols=99 Identities=31% Similarity=0.555 Sum_probs=84.8
Q ss_pred echhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCcccc
Q psy12535 25 ALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSR 104 (209)
Q Consensus 25 ~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (209)
.+.+++..++.|+++.+...+.+|||||||||+|||||+.+|++|||||||++||+.+...+.+.
T Consensus 128 ~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~--------------- 192 (226)
T cd03248 128 HAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQA--------------- 192 (226)
T ss_pred CcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH---------------
Confidence 34556777777888889999999999999999999999999999999999999999988877663
Q ss_pred chhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeeccce
Q psy12535 105 WGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSV 157 (209)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i 157 (209)
++... +++|+|++||+++.+..+|+|++|++|++
T Consensus 193 ------------------l~~~~-~~~tii~~sh~~~~~~~~d~i~~l~~g~i 226 (226)
T cd03248 193 ------------------LYDWP-ERRTVLVIAHRLSTVERADQILVLDGGRI 226 (226)
T ss_pred ------------------HHHHc-CCCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence 22222 35899999999999877999999999975
No 187
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.85 E-value=2.9e-22 Score=169.67 Aligned_cols=99 Identities=33% Similarity=0.400 Sum_probs=83.3
Q ss_pred CceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccc
Q psy12535 37 DRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGV 116 (209)
Q Consensus 37 ~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (209)
+.......+.+||||||||++|||||+.+|+++||||||++||+.+...+.+.+
T Consensus 103 l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l-------------------------- 156 (223)
T TIGR03771 103 LTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELF-------------------------- 156 (223)
T ss_pred CchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH--------------------------
Confidence 334445566789999999999999999999999999999999999888887632
Q ss_pred cchhhhhhhhccccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhc
Q psy12535 117 RGALSLVRTSFLKEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLAS 169 (209)
Q Consensus 117 ~~~~~~~~~~~~~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~ 169 (209)
.....+++|+|++||+++.+. .+|+|+++ +|++++.|+++++.++
T Consensus 157 -------~~~~~~~~tvii~sH~~~~~~~~~d~i~~l-~G~i~~~~~~~~~~~~ 202 (223)
T TIGR03771 157 -------IELAGAGTAILMTTHDLAQAMATCDRVVLL-NGRVIADGTPQQLQDP 202 (223)
T ss_pred -------HHHHHcCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHHhcCh
Confidence 222335789999999999876 48999999 8999999999988654
No 188
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.85 E-value=3.4e-22 Score=171.20 Aligned_cols=96 Identities=26% Similarity=0.417 Sum_probs=82.8
Q ss_pred eecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccch
Q psy12535 40 LVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGA 119 (209)
Q Consensus 40 ~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (209)
..+..+.+||||||||++|||||+.+|+||||||||++||+.+...+++.
T Consensus 141 ~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~------------------------------ 190 (252)
T PRK14239 141 RLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEET------------------------------ 190 (252)
T ss_pred HHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHH------------------------------
Confidence 45667789999999999999999999999999999999999988887663
Q ss_pred hhhhhhhccccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhc
Q psy12535 120 LSLVRTSFLKEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLAS 169 (209)
Q Consensus 120 ~~~~~~~~~~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~ 169 (209)
++... +++|||++||+++.+. .||+|++|++|++++.|+++++..+
T Consensus 191 ---l~~~~-~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 237 (252)
T PRK14239 191 ---LLGLK-DDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQMFMN 237 (252)
T ss_pred ---HHHHh-hCCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 22222 3589999999999875 5899999999999999999998754
No 189
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.85 E-value=2.4e-22 Score=170.01 Aligned_cols=95 Identities=26% Similarity=0.503 Sum_probs=81.9
Q ss_pred eeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccc
Q psy12535 39 TLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRG 118 (209)
Q Consensus 39 t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (209)
......+.+|||||+||++|||||+.+|++|||||||++||+.+...+.+.
T Consensus 123 ~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~----------------------------- 173 (230)
T TIGR03410 123 EMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRV----------------------------- 173 (230)
T ss_pred HHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHH-----------------------------
Confidence 345667789999999999999999999999999999999999988887663
Q ss_pred hhhhhhhhcc-ccceeeeeeeehheecc-cceEEEeeccceeecchhhHH
Q psy12535 119 ALSLVRTSFL-KEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQL 166 (209)
Q Consensus 119 ~~~~~~~~~~-~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l 166 (209)
+..... .++|||++||+++.+.. +|+|++|++|++++.|+++++
T Consensus 174 ----l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 174 ----IRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219 (230)
T ss_pred ----HHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHc
Confidence 222222 37899999999999875 899999999999999999887
No 190
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=3.8e-22 Score=170.87 Aligned_cols=96 Identities=28% Similarity=0.387 Sum_probs=82.5
Q ss_pred eecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccch
Q psy12535 40 LVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGA 119 (209)
Q Consensus 40 ~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (209)
.....+.+|||||||||+|||||+.+|+||||||||++||+.+...+.+.
T Consensus 139 ~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~------------------------------ 188 (250)
T PRK14247 139 RLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESL------------------------------ 188 (250)
T ss_pred hhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHH------------------------------
Confidence 34566789999999999999999999999999999999999988877663
Q ss_pred hhhhhhhccccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhc
Q psy12535 120 LSLVRTSFLKEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLAS 169 (209)
Q Consensus 120 ~~~~~~~~~~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~ 169 (209)
+.... +++|+|++||+++.+. .+|+|++|++|++++.|+++++...
T Consensus 189 ---l~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 235 (250)
T PRK14247 189 ---FLELK-KDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREVFTN 235 (250)
T ss_pred ---HHHHh-cCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHHHHcC
Confidence 22222 3689999999999875 5899999999999999999988654
No 191
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=3.7e-22 Score=173.73 Aligned_cols=101 Identities=22% Similarity=0.366 Sum_probs=85.1
Q ss_pred CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535 36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG 115 (209)
Q Consensus 36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (209)
|+...+...+.+|||||+||++|||||+.+|+||||||||++||+.+...+++.+
T Consensus 131 ~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l------------------------- 185 (271)
T PRK13632 131 GMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIM------------------------- 185 (271)
T ss_pred CCHHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHH-------------------------
Confidence 3444456677899999999999999999999999999999999999888876632
Q ss_pred ccchhhhhhhhccc-cceeeeeeeehheecccceEEEeeccceeecchhhHHhhc
Q psy12535 116 VRGALSLVRTSFLK-EKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLAS 169 (209)
Q Consensus 116 ~~~~~~~~~~~~~~-~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~~~ 169 (209)
++...+ ++|||++||+++.+..||+|++|++|++++.|+++++...
T Consensus 186 --------~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 232 (271)
T PRK13632 186 --------VDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNN 232 (271)
T ss_pred --------HHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHHhcC
Confidence 222223 4899999999998877999999999999999999887654
No 192
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.85 E-value=3e-22 Score=167.14 Aligned_cols=88 Identities=31% Similarity=0.535 Sum_probs=74.1
Q ss_pred CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535 36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG 115 (209)
Q Consensus 36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (209)
|+...+...+..|||||||||+|||||+.+|++|||||||++||+.+...+++.
T Consensus 123 ~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~-------------------------- 176 (211)
T cd03225 123 GLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLEL-------------------------- 176 (211)
T ss_pred CcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH--------------------------
Confidence 344455667789999999999999999999999999999999999988888663
Q ss_pred ccchhhhhhhhccccceeeeeeeehheecc-cceEEEeeccc
Q psy12535 116 VRGALSLVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGS 156 (209)
Q Consensus 116 ~~~~~~~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~ 156 (209)
+.....+++|||++||+++.+.. ||+|++|++|+
T Consensus 177 -------l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 177 -------LKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred -------HHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 22223347899999999999876 89999999985
No 193
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.85 E-value=1.5e-22 Score=195.03 Aligned_cols=97 Identities=21% Similarity=0.309 Sum_probs=84.2
Q ss_pred eecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccch
Q psy12535 40 LVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGA 119 (209)
Q Consensus 40 ~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (209)
.....+.+|||||||||+|||||+.+|+||||||||++||+.++..+++.
T Consensus 456 ~~~~~~~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~l------------------------------ 505 (623)
T PRK10261 456 HAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINL------------------------------ 505 (623)
T ss_pred HhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH------------------------------
Confidence 44566789999999999999999999999999999999999988888763
Q ss_pred hhhhhhhcc-ccceeeeeeeehheecc-cceEEEeeccceeecchhhHHhhc
Q psy12535 120 LSLVRTSFL-KEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQLLAS 169 (209)
Q Consensus 120 ~~~~~~~~~-~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l~~~ 169 (209)
+++... .+.|||+|||+++.+.. ||+|++|++|+|++.|++++++.+
T Consensus 506 ---l~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~iv~~g~~~~i~~~ 554 (623)
T PRK10261 506 ---LLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVEIGPRRAVFEN 554 (623)
T ss_pred ---HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhcC
Confidence 333333 37899999999999865 899999999999999999998764
No 194
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=4.4e-22 Score=171.70 Aligned_cols=96 Identities=27% Similarity=0.440 Sum_probs=82.7
Q ss_pred eecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccch
Q psy12535 40 LVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGA 119 (209)
Q Consensus 40 ~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (209)
.+...+.+||||||||++|||||+.+|+||||||||++||+.+...+.+.
T Consensus 148 ~l~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~------------------------------ 197 (259)
T PRK14274 148 RLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEEL------------------------------ 197 (259)
T ss_pred hhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH------------------------------
Confidence 45667789999999999999999999999999999999999988777653
Q ss_pred hhhhhhhccccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhc
Q psy12535 120 LSLVRTSFLKEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLAS 169 (209)
Q Consensus 120 ~~~~~~~~~~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~ 169 (209)
+.... +++|+|+|||+++.+. .+|+|++|++|++++.|+++++..+
T Consensus 198 ---l~~~~-~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 244 (259)
T PRK14274 198 ---ILKLK-EKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKMFSN 244 (259)
T ss_pred ---HHHHh-cCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHHHHhhC
Confidence 22222 3689999999999876 4899999999999999999998754
No 195
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=3.7e-22 Score=171.23 Aligned_cols=96 Identities=26% Similarity=0.468 Sum_probs=82.5
Q ss_pred eecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccch
Q psy12535 40 LVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGA 119 (209)
Q Consensus 40 ~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (209)
.++..+.+||||||||++|||||+.+|+||||||||++||+.+...+.+.
T Consensus 142 ~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~------------------------------ 191 (251)
T PRK14244 142 RLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENL------------------------------ 191 (251)
T ss_pred HhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHH------------------------------
Confidence 45567789999999999999999999999999999999999888777552
Q ss_pred hhhhhhhccccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhc
Q psy12535 120 LSLVRTSFLKEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLAS 169 (209)
Q Consensus 120 ~~~~~~~~~~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~ 169 (209)
+... .+++|||++||+++.+. .+|+|++|++|++++.|+++++...
T Consensus 192 ---l~~~-~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 238 (251)
T PRK14244 192 ---IQEL-KKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEIFKN 238 (251)
T ss_pred ---HHHH-hcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHHHHhcC
Confidence 2232 24789999999999876 4899999999999999999988654
No 196
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=5.2e-22 Score=170.05 Aligned_cols=96 Identities=25% Similarity=0.432 Sum_probs=82.3
Q ss_pred eecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccch
Q psy12535 40 LVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGA 119 (209)
Q Consensus 40 ~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (209)
.+.+.+.+||||||||++|||||+.+|+||||||||++||+.+...+.+.
T Consensus 135 ~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~------------------------------ 184 (246)
T PRK14269 135 KLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEEL------------------------------ 184 (246)
T ss_pred HhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH------------------------------
Confidence 34567789999999999999999999999999999999999888777653
Q ss_pred hhhhhhhccccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhc
Q psy12535 120 LSLVRTSFLKEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLAS 169 (209)
Q Consensus 120 ~~~~~~~~~~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~ 169 (209)
+.... +++|+|++||+++.+. .+|+|++|++|++++.|+++++...
T Consensus 185 ---l~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 231 (246)
T PRK14269 185 ---LKELS-HNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFEN 231 (246)
T ss_pred ---HHHHh-CCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHHhC
Confidence 22222 3789999999999876 5899999999999999999988653
No 197
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.85 E-value=3.5e-22 Score=166.92 Aligned_cols=92 Identities=30% Similarity=0.470 Sum_probs=76.2
Q ss_pred CceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccc
Q psy12535 37 DRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGV 116 (209)
Q Consensus 37 ~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (209)
+.......+.+||||||||++|||||+.+|++|||||||++||+.+...+.+.
T Consensus 118 l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~--------------------------- 170 (211)
T cd03298 118 LAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDL--------------------------- 170 (211)
T ss_pred CHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH---------------------------
Confidence 33344556679999999999999999999999999999999999988887663
Q ss_pred cchhhhhhhhcc-ccceeeeeeeehheecc-cceEEEeeccceeecc
Q psy12535 117 RGALSLVRTSFL-KEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFG 161 (209)
Q Consensus 117 ~~~~~~~~~~~~-~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G 161 (209)
++.... .++|||++||+++.+.. +|+|++|++|++++.|
T Consensus 171 ------l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 171 ------VLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred ------HHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 222222 37899999999999865 8999999999998654
No 198
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.85 E-value=3.9e-22 Score=172.34 Aligned_cols=97 Identities=31% Similarity=0.477 Sum_probs=83.0
Q ss_pred eeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccc
Q psy12535 39 TLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRG 118 (209)
Q Consensus 39 t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (209)
..++..+.+|||||+||++|||||+.+|+||||||||++||+.+...+.+.
T Consensus 148 ~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~----------------------------- 198 (260)
T PRK10744 148 DKLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEEL----------------------------- 198 (260)
T ss_pred HHHhcCCCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHH-----------------------------
Confidence 345667789999999999999999999999999999999999888777663
Q ss_pred hhhhhhhhccccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhc
Q psy12535 119 ALSLVRTSFLKEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLAS 169 (209)
Q Consensus 119 ~~~~~~~~~~~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~ 169 (209)
++.. .+++|||++||+++.+. .+|+|++|++|++++.|+++++...
T Consensus 199 ----L~~~-~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 245 (260)
T PRK10744 199 ----ITEL-KQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTDTIFTK 245 (260)
T ss_pred ----HHHH-hcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 2222 23679999999999886 5899999999999999999988653
No 199
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=4.7e-22 Score=170.60 Aligned_cols=96 Identities=29% Similarity=0.394 Sum_probs=82.5
Q ss_pred eecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccch
Q psy12535 40 LVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGA 119 (209)
Q Consensus 40 ~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (209)
.....+.+||||||||++|||||+.+|++|||||||++||+.+...+.+.
T Consensus 142 ~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~------------------------------ 191 (253)
T PRK14267 142 RLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEEL------------------------------ 191 (253)
T ss_pred hhccChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHH------------------------------
Confidence 34567789999999999999999999999999999999999988877663
Q ss_pred hhhhhhhccccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhc
Q psy12535 120 LSLVRTSFLKEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLAS 169 (209)
Q Consensus 120 ~~~~~~~~~~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~ 169 (209)
++... +++|||++||+++.+. .||+|++|++|++++.|+++++...
T Consensus 192 ---l~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 238 (253)
T PRK14267 192 ---LFELK-KEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRKVFEN 238 (253)
T ss_pred ---HHHHh-hCCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 22322 3589999999999876 4899999999999999999988654
No 200
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.85 E-value=4.9e-22 Score=172.30 Aligned_cols=100 Identities=25% Similarity=0.340 Sum_probs=84.1
Q ss_pred CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535 36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG 115 (209)
Q Consensus 36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (209)
|+.......+.+||||||||++||||++.+|++|||||||++||+.+...+.+.+
T Consensus 132 ~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L------------------------- 186 (265)
T PRK10253 132 GITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELL------------------------- 186 (265)
T ss_pred CCHHHhcCCcccCChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHH-------------------------
Confidence 3344456677899999999999999999999999999999999999888886633
Q ss_pred ccchhhhhhhhcc-ccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhh
Q psy12535 116 VRGALSLVRTSFL-KEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLA 168 (209)
Q Consensus 116 ~~~~~~~~~~~~~-~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~ 168 (209)
..... .++|||++||+++.+. .+|+|++|++|++++.|+++++..
T Consensus 187 --------~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 233 (265)
T PRK10253 187 --------SELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIVT 233 (265)
T ss_pred --------HHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhh
Confidence 22222 3789999999999875 589999999999999999988764
No 201
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=5.3e-22 Score=172.16 Aligned_cols=96 Identities=28% Similarity=0.452 Sum_probs=82.4
Q ss_pred eecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccch
Q psy12535 40 LVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGA 119 (209)
Q Consensus 40 ~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (209)
..+..+.+||||||||++|||||+.+|++|||||||++||+.+...+.+.
T Consensus 157 ~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~------------------------------ 206 (268)
T PRK14248 157 RLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEEL------------------------------ 206 (268)
T ss_pred HHhcCcccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHH------------------------------
Confidence 34567789999999999999999999999999999999999988877653
Q ss_pred hhhhhhhccccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhc
Q psy12535 120 LSLVRTSFLKEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLAS 169 (209)
Q Consensus 120 ~~~~~~~~~~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~ 169 (209)
++... +++|||++||+++.+. .||+|++|++|++++.|+++++..+
T Consensus 207 ---l~~~~-~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 253 (268)
T PRK14248 207 ---ITELK-EEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQIFTS 253 (268)
T ss_pred ---HHHHh-cCCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 22322 3579999999999875 5899999999999999999988754
No 202
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=4.9e-22 Score=170.52 Aligned_cols=97 Identities=27% Similarity=0.448 Sum_probs=83.5
Q ss_pred eeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccc
Q psy12535 39 TLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRG 118 (209)
Q Consensus 39 t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (209)
+.....+.+|||||||||+|||||+.+|++|||||||++||+.+...+.+.
T Consensus 139 ~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~----------------------------- 189 (251)
T PRK14249 139 DNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEEL----------------------------- 189 (251)
T ss_pred hHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHH-----------------------------
Confidence 345677889999999999999999999999999999999999988777652
Q ss_pred hhhhhhhhccccceeeeeeeehheecc-cceEEEeeccceeecchhhHHhhc
Q psy12535 119 ALSLVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQLLAS 169 (209)
Q Consensus 119 ~~~~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l~~~ 169 (209)
++.. .+++|||++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 190 ----l~~~-~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 236 (251)
T PRK14249 190 ----MQEL-KQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEIFSR 236 (251)
T ss_pred ----HHHH-hcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHHHHhC
Confidence 2222 247899999999999875 799999999999999999988654
No 203
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.85 E-value=4.3e-22 Score=173.23 Aligned_cols=105 Identities=20% Similarity=0.310 Sum_probs=87.3
Q ss_pred CCce-eecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccc
Q psy12535 36 GDRT-LVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSAL 114 (209)
Q Consensus 36 g~~t-~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (209)
|+.+ ..+..+..|||||+||++|||||+.+|+||||||||++||+.+...+.+.
T Consensus 139 gl~~~~~~~~~~~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~------------------------- 193 (268)
T PRK10419 139 DLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRL------------------------- 193 (268)
T ss_pred CCChhHhhCCCccCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHH-------------------------
Confidence 5543 55777889999999999999999999999999999999999888777663
Q ss_pred cccchhhhhhhhcc-ccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhccCCc
Q psy12535 115 GVRGALSLVRTSFL-KEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLASGLDF 173 (209)
Q Consensus 115 ~~~~~~~~~~~~~~-~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~~~~~ 173 (209)
++.... .++|+|++||+++.+. .||+|++|++|++++.|+++++......+
T Consensus 194 --------l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~ 246 (268)
T PRK10419 194 --------LKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVETQPVGDKLTFSSPA 246 (268)
T ss_pred --------HHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEeeeCChhhccCCCCHH
Confidence 222222 3789999999999987 48999999999999999999987544434
No 204
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.85 E-value=4.1e-22 Score=166.75 Aligned_cols=92 Identities=34% Similarity=0.538 Sum_probs=74.4
Q ss_pred CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535 36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG 115 (209)
Q Consensus 36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (209)
|++..+...+.+||||||||++|||||+.+|++|||||||++||+.+...+.+.
T Consensus 121 ~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~-------------------------- 174 (213)
T cd03235 121 GLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYEL-------------------------- 174 (213)
T ss_pred CCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHH--------------------------
Confidence 334445566779999999999999999999999999999999999988877663
Q ss_pred ccchhhhhhhhccccceeeeeeeehheecc-cceEEEeeccceeecc
Q psy12535 116 VRGALSLVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFG 161 (209)
Q Consensus 116 ~~~~~~~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G 161 (209)
+.+...+++|||++||+++.+.. +|+|++|++| +++.|
T Consensus 175 -------l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 175 -------LRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred -------HHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-EeecC
Confidence 22223357899999999998865 8999999886 55443
No 205
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.85 E-value=4.2e-22 Score=166.44 Aligned_cols=87 Identities=25% Similarity=0.378 Sum_probs=74.1
Q ss_pred ecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchh
Q psy12535 41 VGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGAL 120 (209)
Q Consensus 41 vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (209)
....+.+||||||||++|||||+.+|++|||||||++||+.+...+.+.
T Consensus 124 ~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~------------------------------- 172 (211)
T cd03264 124 AKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNL------------------------------- 172 (211)
T ss_pred HhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH-------------------------------
Confidence 3456679999999999999999999999999999999999988888663
Q ss_pred hhhhhhccccceeeeeeeehheec-ccceEEEeeccceeecc
Q psy12535 121 SLVRTSFLKEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFG 161 (209)
Q Consensus 121 ~~~~~~~~~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G 161 (209)
++... +++|||++||+++.+. .+|++++|++|++++.|
T Consensus 173 --l~~~~-~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 173 --LSELG-EDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred --HHHHh-CCCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 22222 2589999999999986 48999999999998764
No 206
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.85 E-value=5.7e-22 Score=171.46 Aligned_cols=100 Identities=29% Similarity=0.431 Sum_probs=84.1
Q ss_pred CCceeecccceecCCccchhhhhHHHHh------hhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhh
Q psy12535 36 GDRTLVGDKGVSLSGGQRARISLARAVY------KRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSF 109 (209)
Q Consensus 36 g~~t~vg~~g~~LSgGqrQRlaiARal~------~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (209)
|+.......+.+|||||||||+|||||+ .+|++|||||||++||+.+...+.+.
T Consensus 123 ~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~-------------------- 182 (258)
T PRK13548 123 DLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRL-------------------- 182 (258)
T ss_pred CCHhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHH--------------------
Confidence 4444556677899999999999999999 59999999999999999988877663
Q ss_pred hcccccccchhhhhhhhc-cccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhh
Q psy12535 110 FGSALGVRGALSLVRTSF-LKEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLA 168 (209)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~-~~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~ 168 (209)
++... ..++|||++||+++.+. .||+|++|++|++++.|+++++..
T Consensus 183 -------------l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (258)
T PRK13548 183 -------------ARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEVLT 230 (258)
T ss_pred -------------HHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHHHhC
Confidence 22222 34789999999999886 589999999999999999988764
No 207
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.85 E-value=1.8e-22 Score=170.53 Aligned_cols=89 Identities=27% Similarity=0.434 Sum_probs=74.7
Q ss_pred eeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccc
Q psy12535 39 TLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRG 118 (209)
Q Consensus 39 t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (209)
..+...+..||||||||++|||||+.+|++|||||||++||+.+...+++.
T Consensus 138 ~~~~~~~~~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~----------------------------- 188 (228)
T PRK10584 138 KRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADL----------------------------- 188 (228)
T ss_pred hHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH-----------------------------
Confidence 334556679999999999999999999999999999999999988777663
Q ss_pred hhhhhhhhcc-ccceeeeeeeehheecccceEEEeeccceeec
Q psy12535 119 ALSLVRTSFL-KEKTVMLITHQIQYLTHVDHVMLLEKGSVEAF 160 (209)
Q Consensus 119 ~~~~~~~~~~-~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~ 160 (209)
+++... .++|||++||+++.+..+|++++|++|++++.
T Consensus 189 ----l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 189 ----LFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQEE 227 (228)
T ss_pred ----HHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEec
Confidence 223222 37899999999998877999999999998753
No 208
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.85 E-value=6.5e-22 Score=184.75 Aligned_cols=100 Identities=20% Similarity=0.331 Sum_probs=85.3
Q ss_pred CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535 36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG 115 (209)
Q Consensus 36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (209)
|+.......+.+|||||||||+|||||+.+|++|||||||++||+.+...+.+.
T Consensus 124 ~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~-------------------------- 177 (490)
T PRK10938 124 GITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAEL-------------------------- 177 (490)
T ss_pred CCHhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHH--------------------------
Confidence 444455677889999999999999999999999999999999999988888663
Q ss_pred ccchhhhhhhhccccceeeeeeeehheecc-cceEEEeeccceeecchhhHHhh
Q psy12535 116 VRGALSLVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQLLA 168 (209)
Q Consensus 116 ~~~~~~~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l~~ 168 (209)
+.+...+++|||+|||+++.+.. ||+|++|++|+++..|+++++..
T Consensus 178 -------l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 224 (490)
T PRK10938 178 -------LASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEILQ 224 (490)
T ss_pred -------HHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHHhc
Confidence 33333357899999999998865 89999999999999999888754
No 209
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.85 E-value=3.9e-22 Score=166.53 Aligned_cols=93 Identities=28% Similarity=0.430 Sum_probs=77.8
Q ss_pred CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535 36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG 115 (209)
Q Consensus 36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (209)
|+.......+.+||||||||++|||||+.+|++|||||||++||+.+...+.+.
T Consensus 117 ~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~-------------------------- 170 (210)
T cd03269 117 ELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDV-------------------------- 170 (210)
T ss_pred CChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHH--------------------------
Confidence 445555667789999999999999999999999999999999999988877663
Q ss_pred ccchhhhhhhhccccceeeeeeeehheecc-cceEEEeeccceeecc
Q psy12535 116 VRGALSLVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFG 161 (209)
Q Consensus 116 ~~~~~~~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G 161 (209)
++....+++|||++||+++.+.. +|++++|++|++++.|
T Consensus 171 -------l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 171 -------IRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred -------HHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 22223347899999999998764 8999999999998654
No 210
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.85 E-value=5.1e-22 Score=173.23 Aligned_cols=109 Identities=16% Similarity=0.295 Sum_probs=89.6
Q ss_pred CceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccc
Q psy12535 37 DRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGV 116 (209)
Q Consensus 37 ~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (209)
+...+...+.+|||||+||++||||++.+|+||||||||++||+.+...+.+.+
T Consensus 133 l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L-------------------------- 186 (264)
T PRK13546 133 LGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKI-------------------------- 186 (264)
T ss_pred CchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHH--------------------------
Confidence 344556677899999999999999999999999999999999998877776632
Q ss_pred cchhhhhhhhccccceeeeeeeehheecc-cceEEEeeccceeecchhhHHhhccCCchhccC
Q psy12535 117 RGALSLVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQLLASGLDFTQLLD 178 (209)
Q Consensus 117 ~~~~~~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l~~~~~~~~~~~~ 178 (209)
......++|||++||+++.+.. +|+|++|++|++++.|+++++......+.+.+.
T Consensus 187 -------~~~~~~g~tiIiisH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~~~~ 242 (264)
T PRK13546 187 -------YEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKDYGELDDVLPKYEAFLNDFK 242 (264)
T ss_pred -------HHHHHCCCEEEEEcCCHHHHHHHcCEEEEEECCEEEEeCCHHHHHHHhHHHHHHHH
Confidence 2222357899999999998865 899999999999999999999876555544443
No 211
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=7.2e-22 Score=169.27 Aligned_cols=95 Identities=29% Similarity=0.461 Sum_probs=81.7
Q ss_pred ecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchh
Q psy12535 41 VGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGAL 120 (209)
Q Consensus 41 vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (209)
....+.+|||||+||++|||||+.+|++|||||||++||+.+...+.+.
T Consensus 141 ~~~~~~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~------------------------------- 189 (251)
T PRK14251 141 LDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEET------------------------------- 189 (251)
T ss_pred hccChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHH-------------------------------
Confidence 4567789999999999999999999999999999999999988777663
Q ss_pred hhhhhhccccceeeeeeeehheecc-cceEEEeeccceeecchhhHHhhc
Q psy12535 121 SLVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQLLAS 169 (209)
Q Consensus 121 ~~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l~~~ 169 (209)
+.+. .+++|||+|||+++.+.. +|+|++|++|++++.|+++++...
T Consensus 190 --l~~~-~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 236 (251)
T PRK14251 190 --LMEL-KHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEMFIA 236 (251)
T ss_pred --HHHH-HcCCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHHHHhC
Confidence 2222 236899999999998764 899999999999999999988644
No 212
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=6.2e-22 Score=169.86 Aligned_cols=96 Identities=27% Similarity=0.425 Sum_probs=82.5
Q ss_pred eecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccch
Q psy12535 40 LVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGA 119 (209)
Q Consensus 40 ~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (209)
.....+.+||+|||||++||||++.+|+||||||||++||+.+...+.+.
T Consensus 140 ~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~------------------------------ 189 (251)
T PRK14270 140 DLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDL------------------------------ 189 (251)
T ss_pred HhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH------------------------------
Confidence 34567789999999999999999999999999999999999988877663
Q ss_pred hhhhhhhccccceeeeeeeehheecc-cceEEEeeccceeecchhhHHhhc
Q psy12535 120 LSLVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQLLAS 169 (209)
Q Consensus 120 ~~~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l~~~ 169 (209)
++... +++|||++||+++.+.. +|+|++|++|++++.|+++++..+
T Consensus 190 ---L~~~~-~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 236 (251)
T PRK14270 190 ---MVELK-KEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKIFLE 236 (251)
T ss_pred ---HHHHH-hCCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHHHhcC
Confidence 22222 35899999999998764 899999999999999999998654
No 213
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.85 E-value=8.2e-22 Score=168.82 Aligned_cols=96 Identities=29% Similarity=0.498 Sum_probs=82.0
Q ss_pred eecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccch
Q psy12535 40 LVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGA 119 (209)
Q Consensus 40 ~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (209)
.++..+.+|||||+||++|||||+.+|++|||||||++||+.+...+.+.
T Consensus 139 ~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~------------------------------ 188 (250)
T PRK14240 139 RLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEEL------------------------------ 188 (250)
T ss_pred HHhcCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHH------------------------------
Confidence 34566789999999999999999999999999999999999988877653
Q ss_pred hhhhhhhccccceeeeeeeehheecc-cceEEEeeccceeecchhhHHhhc
Q psy12535 120 LSLVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQLLAS 169 (209)
Q Consensus 120 ~~~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l~~~ 169 (209)
++.. .+++|||++||+++.+.. +|+|++|++|++++.|+++++...
T Consensus 189 ---l~~~-~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 235 (250)
T PRK14240 189 ---IQEL-KKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVDLFTN 235 (250)
T ss_pred ---HHHH-hcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 2222 236899999999998764 899999999999999999988643
No 214
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.85 E-value=7.8e-22 Score=171.38 Aligned_cols=96 Identities=26% Similarity=0.391 Sum_probs=82.0
Q ss_pred cccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhh
Q psy12535 42 GDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALS 121 (209)
Q Consensus 42 g~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (209)
...+.+|||||||||+|||||+.+|+||||||||++||+.+...+.+.+
T Consensus 144 ~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l------------------------------- 192 (267)
T PRK15112 144 SYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLM------------------------------- 192 (267)
T ss_pred hcCchhcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHH-------------------------------
Confidence 3455789999999999999999999999999999999998887776632
Q ss_pred hhhhhcc-ccceeeeeeeehheecc-cceEEEeeccceeecchhhHHhhcc
Q psy12535 122 LVRTSFL-KEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQLLASG 170 (209)
Q Consensus 122 ~~~~~~~-~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l~~~~ 170 (209)
..... .+.|||++||+++.+.. ||+|++|++|++++.|+++++....
T Consensus 193 --~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~ 241 (267)
T PRK15112 193 --LELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGSTADVLASP 241 (267)
T ss_pred --HHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHhcCC
Confidence 22222 37899999999999875 8999999999999999999987653
No 215
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.85 E-value=7.5e-22 Score=169.80 Aligned_cols=100 Identities=27% Similarity=0.410 Sum_probs=83.4
Q ss_pred CCceeecccceecCCccchhhhhHHHHhh-------hcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhh
Q psy12535 36 GDRTLVGDKGVSLSGGQRARISLARAVYK-------RADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRS 108 (209)
Q Consensus 36 g~~t~vg~~g~~LSgGqrQRlaiARal~~-------~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (209)
|+...+...+..||||||||++|||||+. +|++|||||||++||+.+...+.+.
T Consensus 115 ~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~------------------- 175 (248)
T PRK03695 115 GLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRL------------------- 175 (248)
T ss_pred CCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHHHHHHHHHH-------------------
Confidence 34445566778999999999999999997 6799999999999999988777653
Q ss_pred hhcccccccchhhhhhhhccccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhh
Q psy12535 109 FFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLA 168 (209)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~ 168 (209)
++....+++|||++||+++.+. .||+|++|++|++++.|+++++..
T Consensus 176 --------------L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 222 (248)
T PRK03695 176 --------------LSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLT 222 (248)
T ss_pred --------------HHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhC
Confidence 2232335789999999999765 589999999999999999988754
No 216
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.85 E-value=6.6e-22 Score=162.28 Aligned_cols=91 Identities=34% Similarity=0.481 Sum_probs=75.2
Q ss_pred ceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccccc
Q psy12535 38 RTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVR 117 (209)
Q Consensus 38 ~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (209)
...+...+.+|||||+||++||||++.+|+++||||||++||+.+...+.+.
T Consensus 88 ~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~---------------------------- 139 (180)
T cd03214 88 AHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLEL---------------------------- 139 (180)
T ss_pred HhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHH----------------------------
Confidence 3344556779999999999999999999999999999999999888777663
Q ss_pred chhhhhhhhccc-cceeeeeeeehheec-ccceEEEeeccceeecc
Q psy12535 118 GALSLVRTSFLK-EKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFG 161 (209)
Q Consensus 118 ~~~~~~~~~~~~-~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G 161 (209)
+.....+ ++|+|++||+++.+. .+|++++|++|++++.|
T Consensus 140 -----l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 140 -----LRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180 (180)
T ss_pred -----HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 2222233 689999999999875 58999999999997653
No 217
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.84 E-value=4.1e-22 Score=167.51 Aligned_cols=106 Identities=42% Similarity=0.802 Sum_probs=87.5
Q ss_pred ceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhh-hhhccccC
Q psy12535 19 RVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFED-CITGLHTG 97 (209)
Q Consensus 19 ~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~-~~~~~~~~ 97 (209)
++++.+++.+.+..+|.|+++.++..+..|||||||||+||||++.+|++|||||||++||+.+...+++. ++..
T Consensus 112 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~---- 187 (218)
T cd03290 112 AVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKF---- 187 (218)
T ss_pred HHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHH----
Confidence 34455566666777788999999999999999999999999999999999999999999999888777652 2211
Q ss_pred CCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeeccc
Q psy12535 98 VPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGS 156 (209)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~ 156 (209)
....+.|+|++||+++.+..+|++++|++|.
T Consensus 188 ----------------------------~~~~~~tii~~sH~~~~~~~~d~i~~l~~G~ 218 (218)
T cd03290 188 ----------------------------LQDDKRTLVLVTHKLQYLPHADWIIAMKDGS 218 (218)
T ss_pred ----------------------------HhcCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence 1224789999999999887899999999884
No 218
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=9.3e-22 Score=168.46 Aligned_cols=95 Identities=26% Similarity=0.443 Sum_probs=82.1
Q ss_pred ecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchh
Q psy12535 41 VGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGAL 120 (209)
Q Consensus 41 vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (209)
....+.+|||||+||++|||||+.+|+||||||||++||+.+...+.+.
T Consensus 142 ~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~------------------------------- 190 (252)
T PRK14272 142 LKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDL------------------------------- 190 (252)
T ss_pred hcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHH-------------------------------
Confidence 3456789999999999999999999999999999999999988777663
Q ss_pred hhhhhhccccceeeeeeeehheecc-cceEEEeeccceeecchhhHHhhc
Q psy12535 121 SLVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQLLAS 169 (209)
Q Consensus 121 ~~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l~~~ 169 (209)
++... +++|+|++||+++.+.. ||+|++|++|++++.|+++++..+
T Consensus 191 --l~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 237 (252)
T PRK14272 191 --MTDLK-KVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQLFTN 237 (252)
T ss_pred --HHHHh-cCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 22222 36899999999999875 899999999999999999998754
No 219
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.84 E-value=6.4e-22 Score=186.68 Aligned_cols=96 Identities=24% Similarity=0.445 Sum_probs=82.6
Q ss_pred ecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchh
Q psy12535 41 VGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGAL 120 (209)
Q Consensus 41 vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (209)
....+.+|||||||||+|||||+.+|+||||||||++||+.+...+.+.
T Consensus 150 ~~~~~~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~------------------------------- 198 (529)
T PRK15134 150 LTDYPHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQL------------------------------- 198 (529)
T ss_pred HhhCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHH-------------------------------
Confidence 3556789999999999999999999999999999999999988888663
Q ss_pred hhhhhhcc-ccceeeeeeeehheecc-cceEEEeeccceeecchhhHHhhc
Q psy12535 121 SLVRTSFL-KEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQLLAS 169 (209)
Q Consensus 121 ~~~~~~~~-~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l~~~ 169 (209)
+++... .++|||+|||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 199 --l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 247 (529)
T PRK15134 199 --LRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVEQNRAATLFSA 247 (529)
T ss_pred --HHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEEEeCCHHHHhhC
Confidence 333222 37899999999998764 899999999999999999888653
No 220
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.84 E-value=9.1e-22 Score=168.54 Aligned_cols=93 Identities=22% Similarity=0.345 Sum_probs=78.6
Q ss_pred eecccce-ecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccc
Q psy12535 40 LVGDKGV-SLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRG 118 (209)
Q Consensus 40 ~vg~~g~-~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (209)
.++.... .|||||+|||+|||||+.+|+||||||||++||+.+...+.+.
T Consensus 143 ~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~----------------------------- 193 (252)
T CHL00131 143 FLSRNVNEGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEG----------------------------- 193 (252)
T ss_pred hhccccccCCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHH-----------------------------
Confidence 3445555 5999999999999999999999999999999999988887663
Q ss_pred hhhhhhhhccccceeeeeeeehheecc--cceEEEeeccceeecchhhH
Q psy12535 119 ALSLVRTSFLKEKTVMLITHQIQYLTH--VDHVMLLEKGSVEAFGTTTQ 165 (209)
Q Consensus 119 ~~~~~~~~~~~~~TiIvitH~l~~l~~--~DrV~~L~~G~i~~~G~~~~ 165 (209)
++....+++|||++||+++.+.. +|+|++|++|++++.|+++.
T Consensus 194 ----l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 238 (252)
T CHL00131 194 ----INKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKTGDAEL 238 (252)
T ss_pred ----HHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEEecChhh
Confidence 22323357899999999998864 79999999999999998874
No 221
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=8e-22 Score=168.81 Aligned_cols=96 Identities=26% Similarity=0.411 Sum_probs=81.8
Q ss_pred eeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccc
Q psy12535 39 TLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRG 118 (209)
Q Consensus 39 t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (209)
+.+...+.+|||||+|||+|||||+.+|+||||||||++||+.+...+.+.
T Consensus 137 ~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~----------------------------- 187 (249)
T PRK14253 137 DRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEEL----------------------------- 187 (249)
T ss_pred HHhhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHH-----------------------------
Confidence 344567789999999999999999999999999999999999988777663
Q ss_pred hhhhhhhhccccceeeeeeeehheecc-cceEEEeeccceeecchhhHHhh
Q psy12535 119 ALSLVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQLLA 168 (209)
Q Consensus 119 ~~~~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l~~ 168 (209)
++... +++|||++||+++.+.. ||++++|++|++++.|+++++..
T Consensus 188 ----l~~~~-~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 233 (249)
T PRK14253 188 ----MEELK-KNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIFS 233 (249)
T ss_pred ----HHHHh-cCCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHc
Confidence 22222 35799999999998775 89999999999999999988754
No 222
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.84 E-value=8.2e-22 Score=171.25 Aligned_cols=96 Identities=26% Similarity=0.455 Sum_probs=82.0
Q ss_pred eecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccch
Q psy12535 40 LVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGA 119 (209)
Q Consensus 40 ~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (209)
.++..+.+||||||||++|||||+.+|++|||||||++||+.+...+.+.
T Consensus 156 ~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~------------------------------ 205 (267)
T PRK14235 156 RLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEEL------------------------------ 205 (267)
T ss_pred HhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHH------------------------------
Confidence 34566789999999999999999999999999999999999988777663
Q ss_pred hhhhhhhccccceeeeeeeehheecc-cceEEEeeccceeecchhhHHhhc
Q psy12535 120 LSLVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQLLAS 169 (209)
Q Consensus 120 ~~~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l~~~ 169 (209)
++... +++|||++||+++.+.. +|++++|++|++++.|+++++...
T Consensus 206 ---L~~l~-~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 252 (267)
T PRK14235 206 ---IDELR-QNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDTEKMFTN 252 (267)
T ss_pred ---HHHHh-cCCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 22222 36799999999999864 799999999999999999988643
No 223
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.84 E-value=4.3e-22 Score=167.01 Aligned_cols=93 Identities=23% Similarity=0.454 Sum_probs=77.3
Q ss_pred CceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccc
Q psy12535 37 DRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGV 116 (209)
Q Consensus 37 ~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (209)
+.......+.+|||||+||++||||++.+|+|+||||||++||+.+...+++.+
T Consensus 118 l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l-------------------------- 171 (213)
T TIGR01277 118 IADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALV-------------------------- 171 (213)
T ss_pred cHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHH--------------------------
Confidence 333445556799999999999999999999999999999999999888886632
Q ss_pred cchhhhhhhhcc-ccceeeeeeeehheec-ccceEEEeeccceeecch
Q psy12535 117 RGALSLVRTSFL-KEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGT 162 (209)
Q Consensus 117 ~~~~~~~~~~~~-~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~ 162 (209)
..... .+.|||+|||+++.+. .+|+|++|++|++++.|.
T Consensus 172 -------~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 172 -------KQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred -------HHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence 22222 3789999999999876 489999999999998764
No 224
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.84 E-value=1.1e-21 Score=167.48 Aligned_cols=87 Identities=22% Similarity=0.314 Sum_probs=75.5
Q ss_pred ecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhhhhhh
Q psy12535 47 SLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTS 126 (209)
Q Consensus 47 ~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (209)
.|||||||||+||||++.+|+||||||||++||+.+...+.+. ++..
T Consensus 145 ~LS~G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~---------------------------------l~~l 191 (248)
T PRK09580 145 GFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADG---------------------------------VNSL 191 (248)
T ss_pred CCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHH---------------------------------HHHH
Confidence 7999999999999999999999999999999999988777652 2222
Q ss_pred ccccceeeeeeeehheecc--cceEEEeeccceeecchhhHH
Q psy12535 127 FLKEKTVMLITHQIQYLTH--VDHVMLLEKGSVEAFGTTTQL 166 (209)
Q Consensus 127 ~~~~~TiIvitH~l~~l~~--~DrV~~L~~G~i~~~G~~~~l 166 (209)
...++|||++||+++.+.. +|+|++|++|++++.|+++.+
T Consensus 192 ~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~~g~~~~~ 233 (248)
T PRK09580 192 RDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLV 233 (248)
T ss_pred HhCCCEEEEEeCCHHHHHhhhCCEEEEEECCeEEEeCCHHHH
Confidence 2347899999999998875 799999999999999998754
No 225
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.84 E-value=1.4e-21 Score=179.03 Aligned_cols=103 Identities=27% Similarity=0.473 Sum_probs=87.6
Q ss_pred ecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchh
Q psy12535 41 VGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGAL 120 (209)
Q Consensus 41 vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (209)
+...+.+|||||||||.||.||+++|++||.||||.+||...+.++++
T Consensus 151 l~~yPHeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~-------------------------------- 198 (534)
T COG4172 151 LDAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILD-------------------------------- 198 (534)
T ss_pred hhhCCcccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHH--------------------------------
Confidence 344455999999999999999999999999999999999988877766
Q ss_pred hhhhhhc-cccceeeeeeeehheecc-cceEEEeeccceeecchhhHHhhccC-Cchhc
Q psy12535 121 SLVRTSF-LKEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQLLASGL-DFTQL 176 (209)
Q Consensus 121 ~~~~~~~-~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l~~~~~-~~~~~ 176 (209)
+++.+. +-|+.+++||||+..++. +|||+||.+|+|++.|+.++++.+.. .|++.
T Consensus 199 -Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~ivE~~~t~~lF~~PqHpYTr~ 256 (534)
T COG4172 199 -LLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVETGTTETLFAAPQHPYTRK 256 (534)
T ss_pred -HHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEeecCcHHHHhhCCCChHHHH
Confidence 333333 348999999999999986 69999999999999999999998764 45544
No 226
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.84 E-value=8.3e-22 Score=185.42 Aligned_cols=101 Identities=23% Similarity=0.385 Sum_probs=84.8
Q ss_pred CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535 36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG 115 (209)
Q Consensus 36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (209)
|++......+.+|||||||||+|||||+.+|+||||||||++||+.+...+.+.
T Consensus 157 gl~~~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~-------------------------- 210 (520)
T TIGR03269 157 QLSHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNA-------------------------- 210 (520)
T ss_pred CChhhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHH--------------------------
Confidence 344445667789999999999999999999999999999999999988888663
Q ss_pred ccchhhhhhhhcc-ccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhc
Q psy12535 116 VRGALSLVRTSFL-KEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLAS 169 (209)
Q Consensus 116 ~~~~~~~~~~~~~-~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~ 169 (209)
+++... .++|||+|||+++.+. .||+|++|++|+++..|+++++...
T Consensus 211 -------l~~l~~~~g~tviivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 259 (520)
T TIGR03269 211 -------LEEAVKASGISMVLTSHWPEVIEDLSDKAIWLENGEIKEEGTPDEVVAV 259 (520)
T ss_pred -------HHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEeCCEEeeecCHHHHHHH
Confidence 223222 3789999999999986 4899999999999999998887653
No 227
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=9.9e-22 Score=170.05 Aligned_cols=97 Identities=25% Similarity=0.456 Sum_probs=83.1
Q ss_pred eecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccch
Q psy12535 40 LVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGA 119 (209)
Q Consensus 40 ~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (209)
.++..+.+|||||+||++|||||+.+|+||||||||++||+.+...+.+.+
T Consensus 143 ~~~~~~~~LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l----------------------------- 193 (261)
T PRK14258 143 KIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLI----------------------------- 193 (261)
T ss_pred HhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHH-----------------------------
Confidence 346677899999999999999999999999999999999999888776632
Q ss_pred hhhhhhhcc-ccceeeeeeeehheecc-cceEEEeec-----cceeecchhhHHhhc
Q psy12535 120 LSLVRTSFL-KEKTVMLITHQIQYLTH-VDHVMLLEK-----GSVEAFGTTTQLLAS 169 (209)
Q Consensus 120 ~~~~~~~~~-~~~TiIvitH~l~~l~~-~DrV~~L~~-----G~i~~~G~~~~l~~~ 169 (209)
..... .++|||+|||+++.+.. ||+|++|++ |++++.|+++++..+
T Consensus 194 ----~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~~~~~~~~~ 246 (261)
T PRK14258 194 ----QSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVEFGLTKKIFNS 246 (261)
T ss_pred ----HHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEEEeCCHHHHHhC
Confidence 22222 37899999999998864 799999999 999999999998754
No 228
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.84 E-value=9.1e-22 Score=171.46 Aligned_cols=97 Identities=28% Similarity=0.450 Sum_probs=83.4
Q ss_pred eeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccc
Q psy12535 39 TLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRG 118 (209)
Q Consensus 39 t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (209)
..+...+..||||||||++|||||+.+|+||||||||++||+.+...+.+.
T Consensus 159 ~~~~~~~~~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~----------------------------- 209 (271)
T PRK14238 159 DRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEEL----------------------------- 209 (271)
T ss_pred HHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHH-----------------------------
Confidence 345667889999999999999999999999999999999999988877663
Q ss_pred hhhhhhhhccccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhc
Q psy12535 119 ALSLVRTSFLKEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLAS 169 (209)
Q Consensus 119 ~~~~~~~~~~~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~ 169 (209)
+.... +++|||++||+++.+. .||++++|++|++++.|+++++..+
T Consensus 210 ----l~~~~-~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~~~ 256 (271)
T PRK14238 210 ----VQELK-KDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDKIFSN 256 (271)
T ss_pred ----HHHHH-cCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCHHHHHcC
Confidence 22222 3689999999999876 4899999999999999999998654
No 229
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.84 E-value=9e-22 Score=186.38 Aligned_cols=102 Identities=23% Similarity=0.383 Sum_probs=81.6
Q ss_pred hhhhccCCCCCceeeccc---ceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccc
Q psy12535 27 KEDFAQLPSGDRTLVGDK---GVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDS 103 (209)
Q Consensus 27 ~~~i~~lp~g~~t~vg~~---g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~ 103 (209)
.++++.++.+..+..+++ |.+||||||||++||||++++|++||||||||+||+.++..+.+.+...
T Consensus 426 ~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~---------- 495 (547)
T PRK10522 426 EKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPL---------- 495 (547)
T ss_pred HHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHH----------
Confidence 344555555444444433 7899999999999999999999999999999999999988876643211
Q ss_pred cchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeeccceeec
Q psy12535 104 RWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAF 160 (209)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~ 160 (209)
....++|+|+|||+++.+..+|+|++|++|++++.
T Consensus 496 ----------------------~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~e~ 530 (547)
T PRK10522 496 ----------------------LQEMGKTIFAISHDDHYFIHADRLLEMRNGQLSEL 530 (547)
T ss_pred ----------------------HHhCCCEEEEEEechHHHHhCCEEEEEECCEEEEe
Confidence 11247899999999999889999999999999876
No 230
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.84 E-value=6.5e-22 Score=165.21 Aligned_cols=89 Identities=22% Similarity=0.374 Sum_probs=73.9
Q ss_pred CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535 36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG 115 (209)
Q Consensus 36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (209)
|++..+...+.+||||||||++|||||+.+|++|||||||++||+.+...+.+.
T Consensus 125 ~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~-------------------------- 178 (214)
T cd03292 125 GLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNL-------------------------- 178 (214)
T ss_pred CCHHHhhCChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHH--------------------------
Confidence 333344556679999999999999999999999999999999999988877663
Q ss_pred ccchhhhhhhhccccceeeeeeeehheecc-cceEEEeeccce
Q psy12535 116 VRGALSLVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGSV 157 (209)
Q Consensus 116 ~~~~~~~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i 157 (209)
++....+++|||++||+++.+.. ||++++|++|++
T Consensus 179 -------l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 179 -------LKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred -------HHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 33323357899999999999875 899999999975
No 231
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.84 E-value=8.3e-22 Score=185.94 Aligned_cols=97 Identities=25% Similarity=0.438 Sum_probs=83.5
Q ss_pred eecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccch
Q psy12535 40 LVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGA 119 (209)
Q Consensus 40 ~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (209)
.....+.+|||||||||+|||||+.+|+||||||||++||+.+...+++.+
T Consensus 418 ~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l----------------------------- 468 (529)
T PRK15134 418 TRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALL----------------------------- 468 (529)
T ss_pred HHhcCCccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHH-----------------------------
Confidence 345667899999999999999999999999999999999999888887632
Q ss_pred hhhhhhhcc-ccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhc
Q psy12535 120 LSLVRTSFL-KEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLAS 169 (209)
Q Consensus 120 ~~~~~~~~~-~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~ 169 (209)
+.... .++|||+|||+++.+. .||+|++|++|++++.|+++++.++
T Consensus 469 ----~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 516 (529)
T PRK15134 469 ----KSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVVEQGDCERVFAA 516 (529)
T ss_pred ----HHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEECCEEEEEcCHHHHhcC
Confidence 22222 3789999999999876 4899999999999999999998754
No 232
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.84 E-value=7e-22 Score=171.63 Aligned_cols=96 Identities=32% Similarity=0.462 Sum_probs=80.4
Q ss_pred CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535 36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG 115 (209)
Q Consensus 36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (209)
|+.......+.+||||||||++|||||+.+|++|||||||++||+.+...+.+.+
T Consensus 122 gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L------------------------- 176 (257)
T PRK11247 122 GLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLI------------------------- 176 (257)
T ss_pred CChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHH-------------------------
Confidence 4444556777899999999999999999999999999999999999888776632
Q ss_pred ccchhhhhhhhcc-ccceeeeeeeehheec-ccceEEEeeccceeecchhh
Q psy12535 116 VRGALSLVRTSFL-KEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTT 164 (209)
Q Consensus 116 ~~~~~~~~~~~~~-~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~ 164 (209)
..... .++|||+|||+++.+. .||+|++|++|++++.|+.+
T Consensus 177 --------~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 177 --------ESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred --------HHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence 22222 3789999999999875 58999999999999888764
No 233
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.84 E-value=9.8e-22 Score=171.99 Aligned_cols=100 Identities=31% Similarity=0.513 Sum_probs=85.9
Q ss_pred CCceeecccceecCCccchhhhhHHHHh---------hhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccch
Q psy12535 36 GDRTLVGDKGVSLSGGQRARISLARAVY---------KRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWG 106 (209)
Q Consensus 36 g~~t~vg~~g~~LSgGqrQRlaiARal~---------~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (209)
|+.+.++..+.+|||||+|||+|||||+ .+|++|||||||++||+.+...+.+.
T Consensus 134 ~l~~~~~~~~~~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~----------------- 196 (272)
T PRK13547 134 GATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDT----------------- 196 (272)
T ss_pred CcHhhhcCCcccCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHH-----------------
Confidence 5666777888999999999999999999 49999999999999999988888663
Q ss_pred hhhhcccccccchhhhhhhhccc-cceeeeeeeehheec-ccceEEEeeccceeecchhhHHhh
Q psy12535 107 RSFFGSALGVRGALSLVRTSFLK-EKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLA 168 (209)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~-~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~ 168 (209)
++....+ ++|||+|||+++.+. .||++++|++|++++.|+++++..
T Consensus 197 ----------------l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 244 (272)
T PRK13547 197 ----------------VRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVAHGAPADVLT 244 (272)
T ss_pred ----------------HHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEEecCHHHHcC
Confidence 2222233 789999999999886 589999999999999999988754
No 234
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.84 E-value=9e-22 Score=166.97 Aligned_cols=93 Identities=26% Similarity=0.344 Sum_probs=77.3
Q ss_pred CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535 36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG 115 (209)
Q Consensus 36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (209)
|+.........+||||||||++||||++.+|+++||||||++||+.+...+++.+
T Consensus 131 ~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~~~~~~~~l------------------------- 185 (224)
T cd03220 131 ELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRL------------------------- 185 (224)
T ss_pred CChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH-------------------------
Confidence 3344455667899999999999999999999999999999999999888876632
Q ss_pred ccchhhhhhhhccccceeeeeeeehheec-ccceEEEeeccceeecc
Q psy12535 116 VRGALSLVRTSFLKEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFG 161 (209)
Q Consensus 116 ~~~~~~~~~~~~~~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G 161 (209)
.....+++|||++||+++.+. .+|+|++|++|++++.|
T Consensus 186 --------~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 186 --------RELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred --------HHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 222234789999999999876 48999999999998765
No 235
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=1.1e-21 Score=168.23 Aligned_cols=97 Identities=28% Similarity=0.445 Sum_probs=82.5
Q ss_pred eecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccch
Q psy12535 40 LVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGA 119 (209)
Q Consensus 40 ~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (209)
.....+.+||||||||++|||||+.+|+||||||||++||+.+...+.+.
T Consensus 141 ~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~------------------------------ 190 (252)
T PRK14255 141 HLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENM------------------------------ 190 (252)
T ss_pred HHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHH------------------------------
Confidence 34567789999999999999999999999999999999999988877663
Q ss_pred hhhhhhhccccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhcc
Q psy12535 120 LSLVRTSFLKEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLASG 170 (209)
Q Consensus 120 ~~~~~~~~~~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~~ 170 (209)
++... +++|+|+|||+++.+. .+|+|++|++|++++.|++.++..+.
T Consensus 191 ---l~~~~-~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~ 238 (252)
T PRK14255 191 ---LLELR-DQYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQMFLNP 238 (252)
T ss_pred ---HHHHH-hCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcCC
Confidence 22222 2579999999999986 48999999999999999998887543
No 236
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=1.3e-21 Score=168.06 Aligned_cols=95 Identities=25% Similarity=0.439 Sum_probs=81.6
Q ss_pred ecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchh
Q psy12535 41 VGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGAL 120 (209)
Q Consensus 41 vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (209)
.+..+.+||||||||++|||||+.+|++|||||||++||+.+...+.+.
T Consensus 142 ~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~------------------------------- 190 (252)
T PRK14256 142 LKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEEL------------------------------- 190 (252)
T ss_pred hhCCcCcCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH-------------------------------
Confidence 4456779999999999999999999999999999999999988877663
Q ss_pred hhhhhhccccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhc
Q psy12535 121 SLVRTSFLKEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLAS 169 (209)
Q Consensus 121 ~~~~~~~~~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~ 169 (209)
++... +++|||++||+++.+. .||++++|++|++++.|+++++...
T Consensus 191 --l~~~~-~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 237 (252)
T PRK14256 191 --IEELK-EKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETKKIFTT 237 (252)
T ss_pred --HHHHH-hCCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 22222 3579999999999875 5899999999999999999988654
No 237
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.84 E-value=7.2e-22 Score=190.26 Aligned_cols=97 Identities=25% Similarity=0.463 Sum_probs=83.9
Q ss_pred eecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccch
Q psy12535 40 LVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGA 119 (209)
Q Consensus 40 ~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (209)
.+...+.+|||||||||+|||||+.+|+||||||||++||+.++..+.+
T Consensus 161 ~~~~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~------------------------------- 209 (623)
T PRK10261 161 ILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQ------------------------------- 209 (623)
T ss_pred HHhCCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHH-------------------------------
Confidence 4567788999999999999999999999999999999999998888766
Q ss_pred hhhhhhhccc-cceeeeeeeehheecc-cceEEEeeccceeecchhhHHhhc
Q psy12535 120 LSLVRTSFLK-EKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQLLAS 169 (209)
Q Consensus 120 ~~~~~~~~~~-~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l~~~ 169 (209)
+++.+..+ |+|||+|||+++.+.. ||+|++|++|+|++.|+++++...
T Consensus 210 --ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~~G~i~~~g~~~~~~~~ 259 (623)
T PRK10261 210 --LIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAVETGSVEQIFHA 259 (623)
T ss_pred --HHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEeeCCeecccCCHHHhhcC
Confidence 33333333 8899999999998764 899999999999999999988653
No 238
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=1.2e-21 Score=168.24 Aligned_cols=97 Identities=31% Similarity=0.450 Sum_probs=83.4
Q ss_pred eeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccc
Q psy12535 39 TLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRG 118 (209)
Q Consensus 39 t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (209)
+.++..+.+||||||||++|||||+.+|++|||||||++||+.+...+.+.
T Consensus 141 ~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~----------------------------- 191 (253)
T PRK14261 141 DRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDL----------------------------- 191 (253)
T ss_pred HHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH-----------------------------
Confidence 445677889999999999999999999999999999999999988877653
Q ss_pred hhhhhhhhccccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhc
Q psy12535 119 ALSLVRTSFLKEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLAS 169 (209)
Q Consensus 119 ~~~~~~~~~~~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~ 169 (209)
++... +++|||++||+++.+. .+|+|++|++|++++.|+++++..+
T Consensus 192 ----l~~~~-~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 238 (253)
T PRK14261 192 ----IEDLK-KEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQIFEN 238 (253)
T ss_pred ----HHHHh-hCceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHHHHHhC
Confidence 22222 3579999999999986 5899999999999999999988654
No 239
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.84 E-value=1.2e-21 Score=170.63 Aligned_cols=97 Identities=29% Similarity=0.438 Sum_probs=82.8
Q ss_pred eeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccc
Q psy12535 39 TLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRG 118 (209)
Q Consensus 39 t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (209)
+.++..+.+|||||||||+|||||+.+|+||||||||++||+.+...+.+.
T Consensus 160 ~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~----------------------------- 210 (272)
T PRK14236 160 DRLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEEL----------------------------- 210 (272)
T ss_pred HHhhCCcccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHH-----------------------------
Confidence 345677889999999999999999999999999999999999988777653
Q ss_pred hhhhhhhhccccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhc
Q psy12535 119 ALSLVRTSFLKEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLAS 169 (209)
Q Consensus 119 ~~~~~~~~~~~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~ 169 (209)
+.+.. ++.|||++||+++.+. .||+|++|++|++++.|+++++...
T Consensus 211 ----L~~~~-~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 257 (272)
T PRK14236 211 ----ITELK-SKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTDTLFTS 257 (272)
T ss_pred ----HHHHH-hCCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCCHHHHhcC
Confidence 22222 3679999999999875 5899999999999999999988643
No 240
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.84 E-value=8.6e-22 Score=166.08 Aligned_cols=97 Identities=22% Similarity=0.288 Sum_probs=80.9
Q ss_pred CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535 36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG 115 (209)
Q Consensus 36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (209)
|++......+.+|||||+||++||||++.+|++|||||||++||+.+...+.+.
T Consensus 113 ~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~-------------------------- 166 (223)
T TIGR03740 113 DLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELREL-------------------------- 166 (223)
T ss_pred CCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHH--------------------------
Confidence 344445566779999999999999999999999999999999999988877663
Q ss_pred ccchhhhhhhhccccceeeeeeeehheec-ccceEEEeeccceeecchhhH
Q psy12535 116 VRGALSLVRTSFLKEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQ 165 (209)
Q Consensus 116 ~~~~~~~~~~~~~~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~ 165 (209)
+.....+++|||++||+++.+. .+|+|++|++|++++.|++.+
T Consensus 167 -------L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 167 -------IRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred -------HHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChhh
Confidence 2232334789999999999885 589999999999999988754
No 241
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.84 E-value=1.4e-21 Score=166.49 Aligned_cols=101 Identities=28% Similarity=0.434 Sum_probs=84.1
Q ss_pred CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535 36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG 115 (209)
Q Consensus 36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (209)
|+...+...+.+|||||+||++||||++.+|+++||||||++||+.+...+.+.+
T Consensus 118 ~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l------------------------- 172 (235)
T cd03299 118 GIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREEL------------------------- 172 (235)
T ss_pred CChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHH-------------------------
Confidence 3334455667799999999999999999999999999999999999888776632
Q ss_pred ccchhhhhhhhcc-ccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhc
Q psy12535 116 VRGALSLVRTSFL-KEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLAS 169 (209)
Q Consensus 116 ~~~~~~~~~~~~~-~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~ 169 (209)
+.... .++|+|++||+++.+. .+|+|++|++|++++.|+++++.+.
T Consensus 173 --------~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 220 (235)
T cd03299 173 --------KKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKK 220 (235)
T ss_pred --------HHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHhC
Confidence 22222 3789999999999876 4899999999999999999887653
No 242
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.84 E-value=1.4e-21 Score=166.12 Aligned_cols=101 Identities=27% Similarity=0.437 Sum_probs=84.5
Q ss_pred CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535 36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG 115 (209)
Q Consensus 36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (209)
|++..+.....+||+||+||++|||||+.+|+++||||||++||+.+...+.+.+
T Consensus 119 ~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l------------------------- 173 (232)
T cd03300 119 QLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLEL------------------------- 173 (232)
T ss_pred CCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHH-------------------------
Confidence 4444556667799999999999999999999999999999999999888776632
Q ss_pred ccchhhhhhhhccc-cceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhc
Q psy12535 116 VRGALSLVRTSFLK-EKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLAS 169 (209)
Q Consensus 116 ~~~~~~~~~~~~~~-~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~ 169 (209)
.....+ ++|||++||+++.+. .+|+|++|++|++.+.|+++++...
T Consensus 174 --------~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~~~ 221 (232)
T cd03300 174 --------KRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEE 221 (232)
T ss_pred --------HHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHHhC
Confidence 222222 789999999999876 4899999999999999998887653
No 243
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.84 E-value=9.2e-22 Score=164.50 Aligned_cols=84 Identities=23% Similarity=0.464 Sum_probs=71.2
Q ss_pred eecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccch
Q psy12535 40 LVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGA 119 (209)
Q Consensus 40 ~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (209)
.+...+.+||||||||++|||||+.+|++|||||||++||+.+...+.+.
T Consensus 130 ~~~~~~~~LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~------------------------------ 179 (214)
T TIGR02673 130 KADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDL------------------------------ 179 (214)
T ss_pred hhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHH------------------------------
Confidence 34455679999999999999999999999999999999999988887663
Q ss_pred hhhhhhhccccceeeeeeeehheecc-cceEEEeeccc
Q psy12535 120 LSLVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGS 156 (209)
Q Consensus 120 ~~~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~ 156 (209)
++....+++|||++||+++.+.. ||+|++|++|+
T Consensus 180 ---l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 180 ---LKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred ---HHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 33323357899999999998875 89999999985
No 244
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=1.6e-21 Score=166.96 Aligned_cols=96 Identities=27% Similarity=0.466 Sum_probs=82.2
Q ss_pred eecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccch
Q psy12535 40 LVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGA 119 (209)
Q Consensus 40 ~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (209)
..+..+.+|||||+||++|||||+.+|+||||||||++||+.+...+.+.
T Consensus 139 ~~~~~~~~LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~------------------------------ 188 (250)
T PRK14262 139 ELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKL------------------------------ 188 (250)
T ss_pred HHhCChhhcCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHH------------------------------
Confidence 35667789999999999999999999999999999999999988877653
Q ss_pred hhhhhhhccccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhc
Q psy12535 120 LSLVRTSFLKEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLAS 169 (209)
Q Consensus 120 ~~~~~~~~~~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~ 169 (209)
+.... +++|+|++||+++.+. .+|+|++|++|+++..|+++++...
T Consensus 189 ---l~~~~-~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 235 (250)
T PRK14262 189 ---LEELS-ENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREIVER 235 (250)
T ss_pred ---HHHHh-cCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHHhC
Confidence 22222 3689999999999765 5899999999999999999988654
No 245
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.84 E-value=1.1e-21 Score=184.30 Aligned_cols=99 Identities=17% Similarity=0.273 Sum_probs=83.7
Q ss_pred CceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccc
Q psy12535 37 DRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGV 116 (209)
Q Consensus 37 ~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (209)
+.........+|||||||||+|||||+.+|+||||||||++||+.+...+.+.
T Consensus 135 l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~--------------------------- 187 (510)
T PRK09700 135 LKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLI--------------------------- 187 (510)
T ss_pred CCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH---------------------------
Confidence 33345666789999999999999999999999999999999999988888663
Q ss_pred cchhhhhhhhccccceeeeeeeehheecc-cceEEEeeccceeecchhhHHhh
Q psy12535 117 RGALSLVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQLLA 168 (209)
Q Consensus 117 ~~~~~~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l~~ 168 (209)
+++...+++|||+|||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 188 ------l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 234 (510)
T PRK09700 188 ------MNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDVSN 234 (510)
T ss_pred ------HHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecchhhCCH
Confidence 33333358899999999999864 89999999999999999887643
No 246
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.84 E-value=1.8e-21 Score=168.91 Aligned_cols=95 Identities=29% Similarity=0.482 Sum_probs=81.6
Q ss_pred ecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchh
Q psy12535 41 VGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGAL 120 (209)
Q Consensus 41 vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (209)
.+..+.+||||||||++|||||+.+|+||||||||++||+.+...+.+.
T Consensus 145 ~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~------------------------------- 193 (264)
T PRK14243 145 LKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEEL------------------------------- 193 (264)
T ss_pred hcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHH-------------------------------
Confidence 4567789999999999999999999999999999999999988887663
Q ss_pred hhhhhhccccceeeeeeeehheecc-cceEEEee---------ccceeecchhhHHhhc
Q psy12535 121 SLVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLE---------KGSVEAFGTTTQLLAS 169 (209)
Q Consensus 121 ~~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~---------~G~i~~~G~~~~l~~~ 169 (209)
+.... +++|||++||+++.+.. ||+|++|+ +|++++.|+++++..+
T Consensus 194 --L~~~~-~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~~~~~~~~~~~ 249 (264)
T PRK14243 194 --MHELK-EQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVEFDRTEKIFNS 249 (264)
T ss_pred --HHHHh-cCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEEeCCHHHHHhC
Confidence 22222 35799999999998764 79999998 7999999999999754
No 247
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.84 E-value=1.5e-21 Score=168.34 Aligned_cols=96 Identities=26% Similarity=0.444 Sum_probs=81.7
Q ss_pred eecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccch
Q psy12535 40 LVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGA 119 (209)
Q Consensus 40 ~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (209)
.....+.+|||||||||+|||||+.+|++|||||||++||+.+...+.+.
T Consensus 141 ~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~------------------------------ 190 (258)
T PRK14241 141 RLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDL------------------------------ 190 (258)
T ss_pred HhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHH------------------------------
Confidence 44567789999999999999999999999999999999999888777653
Q ss_pred hhhhhhhccccceeeeeeeehheec-ccceEEEee------ccceeecchhhHHhhc
Q psy12535 120 LSLVRTSFLKEKTVMLITHQIQYLT-HVDHVMLLE------KGSVEAFGTTTQLLAS 169 (209)
Q Consensus 120 ~~~~~~~~~~~~TiIvitH~l~~l~-~~DrV~~L~------~G~i~~~G~~~~l~~~ 169 (209)
+... .+++|||++||+++.+. .+|+|++|+ +|+|++.|+++++...
T Consensus 191 ---l~~~-~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~~~~~~~~~~~ 243 (258)
T PRK14241 191 ---INEL-KQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEIDDTEKIFSN 243 (258)
T ss_pred ---HHHH-hcCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEecCCHHHHHhC
Confidence 2222 23579999999999875 589999996 7999999999998653
No 248
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=1.6e-21 Score=169.76 Aligned_cols=99 Identities=28% Similarity=0.461 Sum_probs=82.8
Q ss_pred ceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccccc
Q psy12535 38 RTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVR 117 (209)
Q Consensus 38 ~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (209)
...+...+.+|||||||||+|||||+.+|++|||||||++||+.+...+.+.
T Consensus 145 ~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~---------------------------- 196 (269)
T PRK14259 145 KDKLNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEET---------------------------- 196 (269)
T ss_pred hhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHH----------------------------
Confidence 3445667789999999999999999999999999999999999988877663
Q ss_pred chhhhhhhhccccceeeeeeeehheec-ccceEEEeec-----------cceeecchhhHHhhcc
Q psy12535 118 GALSLVRTSFLKEKTVMLITHQIQYLT-HVDHVMLLEK-----------GSVEAFGTTTQLLASG 170 (209)
Q Consensus 118 ~~~~~~~~~~~~~~TiIvitH~l~~l~-~~DrV~~L~~-----------G~i~~~G~~~~l~~~~ 170 (209)
+.+. .+++|||++||+++.+. .||+|++|++ |++++.|+++++..+.
T Consensus 197 -----l~~~-~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g~~~~~~~~~~~~~~~ 255 (269)
T PRK14259 197 -----MHEL-KKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVGYLVEFNETKKIFNSP 255 (269)
T ss_pred -----HHHH-hcCCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccceEEEeCCHHHHHhCc
Confidence 2222 23689999999999876 5899999996 6689999999987643
No 249
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.84 E-value=1.3e-21 Score=170.32 Aligned_cols=99 Identities=30% Similarity=0.421 Sum_probs=82.1
Q ss_pred CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535 36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG 115 (209)
Q Consensus 36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (209)
|+.......+.+||||||||++|||||+.+|+||||||||++||+.+...+.+.
T Consensus 131 gl~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~-------------------------- 184 (272)
T PRK15056 131 DMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISL-------------------------- 184 (272)
T ss_pred CChhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHH--------------------------
Confidence 333445566779999999999999999999999999999999999988887663
Q ss_pred ccchhhhhhhhccccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhh
Q psy12535 116 VRGALSLVRTSFLKEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLA 168 (209)
Q Consensus 116 ~~~~~~~~~~~~~~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~ 168 (209)
+.....+++|||++||+++.+. .||+++++ +|++++.|+++++..
T Consensus 185 -------L~~~~~~g~tviivsH~~~~~~~~~d~v~~~-~G~i~~~g~~~~~~~ 230 (272)
T PRK15056 185 -------LRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLASGPTETTFT 230 (272)
T ss_pred -------HHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHhccC
Confidence 2333335789999999999875 58999877 899999999988753
No 250
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=1.2e-21 Score=183.95 Aligned_cols=94 Identities=16% Similarity=0.310 Sum_probs=81.2
Q ss_pred eecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccch
Q psy12535 40 LVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGA 119 (209)
Q Consensus 40 ~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (209)
.....+.+|||||||||+|||||+.+|+||||||||++||+.+...+++.
T Consensus 398 ~~~~~~~~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~------------------------------ 447 (506)
T PRK13549 398 SPELAIARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKL------------------------------ 447 (506)
T ss_pred CcccccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHH------------------------------
Confidence 34667789999999999999999999999999999999999988888663
Q ss_pred hhhhhhhccccceeeeeeeehheecc-cceEEEeeccceeecchhhHH
Q psy12535 120 LSLVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQL 166 (209)
Q Consensus 120 ~~~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l 166 (209)
+.....+++|||++||+++.+.. ||++++|++|+++..|+.+++
T Consensus 448 ---l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 492 (506)
T PRK13549 448 ---INQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKLKGDLINHNL 492 (506)
T ss_pred ---HHHHHHCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEeccccC
Confidence 22333458899999999998865 899999999999999888765
No 251
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.84 E-value=1.1e-21 Score=163.62 Aligned_cols=89 Identities=26% Similarity=0.470 Sum_probs=75.0
Q ss_pred CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535 36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG 115 (209)
Q Consensus 36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (209)
|+...+...+.+|||||+||++|||||+.+|++|||||||++||+.+...+.+.
T Consensus 124 ~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~-------------------------- 177 (213)
T cd03262 124 GLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDV-------------------------- 177 (213)
T ss_pred CCHhHhhhCccccCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHH--------------------------
Confidence 445556677789999999999999999999999999999999999888777663
Q ss_pred ccchhhhhhhhccccceeeeeeeehheec-ccceEEEeeccce
Q psy12535 116 VRGALSLVRTSFLKEKTVMLITHQIQYLT-HVDHVMLLEKGSV 157 (209)
Q Consensus 116 ~~~~~~~~~~~~~~~~TiIvitH~l~~l~-~~DrV~~L~~G~i 157 (209)
+......++|||++||+++.+. .+|+|++|++|++
T Consensus 178 -------l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 178 -------MKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred -------HHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 2222334789999999999986 4899999999975
No 252
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.84 E-value=1.9e-21 Score=162.29 Aligned_cols=89 Identities=27% Similarity=0.555 Sum_probs=76.6
Q ss_pred ecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchh
Q psy12535 41 VGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGAL 120 (209)
Q Consensus 41 vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (209)
++..+..|||||+||++||||++.+|+++||||||++||+.+...+.+.
T Consensus 119 ~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~------------------------------- 167 (207)
T cd03369 119 VSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKT------------------------------- 167 (207)
T ss_pred ccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHH-------------------------------
Confidence 4567789999999999999999999999999999999999888777552
Q ss_pred hhhhhhccccceeeeeeeehheecccceEEEeeccceeecchh
Q psy12535 121 SLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTT 163 (209)
Q Consensus 121 ~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~ 163 (209)
++.. .+++|+|++||+++.+..+|++++|++|++.+.|++
T Consensus 168 --l~~~-~~~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~~ 207 (207)
T cd03369 168 --IREE-FTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDHP 207 (207)
T ss_pred --HHHh-cCCCEEEEEeCCHHHHhhCCEEEEEECCEEEecCCC
Confidence 3332 247899999999998877999999999999887753
No 253
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=1.9e-21 Score=170.10 Aligned_cols=97 Identities=32% Similarity=0.448 Sum_probs=83.1
Q ss_pred eeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccc
Q psy12535 39 TLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRG 118 (209)
Q Consensus 39 t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (209)
+.+...+.+|||||+||++|||||+.+|+||||||||++||+.+...+++.
T Consensus 155 ~~l~~~~~~LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~----------------------------- 205 (276)
T PRK14271 155 DRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEF----------------------------- 205 (276)
T ss_pred hHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH-----------------------------
Confidence 345667889999999999999999999999999999999999988877663
Q ss_pred hhhhhhhhccccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhc
Q psy12535 119 ALSLVRTSFLKEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLAS 169 (209)
Q Consensus 119 ~~~~~~~~~~~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~ 169 (209)
+.+.. +++|||++||+++.+. .+|+|++|++|++++.|+++++.+.
T Consensus 206 ----L~~~~-~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 252 (276)
T PRK14271 206 ----IRSLA-DRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFSS 252 (276)
T ss_pred ----HHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 22222 2479999999999876 4899999999999999999998764
No 254
>PRK10908 cell division protein FtsE; Provisional
Probab=99.84 E-value=1.3e-21 Score=164.79 Aligned_cols=88 Identities=24% Similarity=0.397 Sum_probs=74.1
Q ss_pred eeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccc
Q psy12535 39 TLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRG 118 (209)
Q Consensus 39 t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (209)
..+...+.+||||||||++|||||+.+|++|||||||++||+.+...+.+.
T Consensus 129 ~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~----------------------------- 179 (222)
T PRK10908 129 DKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRL----------------------------- 179 (222)
T ss_pred hhhhCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHH-----------------------------
Confidence 344566789999999999999999999999999999999999888777663
Q ss_pred hhhhhhhhccccceeeeeeeehheecc-cceEEEeeccceee
Q psy12535 119 ALSLVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGSVEA 159 (209)
Q Consensus 119 ~~~~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~ 159 (209)
+.....++.|+|++||+++.+.. +|+|++|++|+++.
T Consensus 180 ----l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 180 ----FEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred ----HHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence 22222347899999999999875 79999999999853
No 255
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.83 E-value=1.2e-21 Score=184.02 Aligned_cols=98 Identities=16% Similarity=0.233 Sum_probs=83.0
Q ss_pred CceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccc
Q psy12535 37 DRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGV 116 (209)
Q Consensus 37 ~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (209)
+.........+|||||||||+|||||+.+|+||||||||++||+.....+++.
T Consensus 133 l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~--------------------------- 185 (506)
T PRK13549 133 LDINPATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDI--------------------------- 185 (506)
T ss_pred CCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH---------------------------
Confidence 33445667789999999999999999999999999999999999988888663
Q ss_pred cchhhhhhhhccccceeeeeeeehheecc-cceEEEeeccceeecchhhHHh
Q psy12535 117 RGALSLVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQLL 167 (209)
Q Consensus 117 ~~~~~~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l~ 167 (209)
+.+...+++|||+|||+++.+.. ||+|++|++|+++..|+++++.
T Consensus 186 ------l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 231 (506)
T PRK13549 186 ------IRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAGMT 231 (506)
T ss_pred ------HHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeecccccCC
Confidence 22323357899999999998865 8999999999999999887764
No 256
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.83 E-value=2.1e-21 Score=158.91 Aligned_cols=83 Identities=34% Similarity=0.608 Sum_probs=72.7
Q ss_pred ceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhhhh
Q psy12535 45 GVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVR 124 (209)
Q Consensus 45 g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (209)
+..|||||+||++||||++.+|++|||||||++||+.+...+++.+ .
T Consensus 96 ~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l---------------------------------~ 142 (178)
T cd03247 96 GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLI---------------------------------F 142 (178)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHH---------------------------------H
Confidence 6789999999999999999999999999999999999888776632 2
Q ss_pred hhccccceeeeeeeehheecccceEEEeeccceeecc
Q psy12535 125 TSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFG 161 (209)
Q Consensus 125 ~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G 161 (209)
... +++|||++||+++.+..+|++++|++|++++.|
T Consensus 143 ~~~-~~~tii~~sh~~~~~~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 143 EVL-KDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178 (178)
T ss_pred HHc-CCCEEEEEecCHHHHHhCCEEEEEECCEEEecC
Confidence 222 478999999999998879999999999998754
No 257
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.83 E-value=2e-21 Score=165.54 Aligned_cols=88 Identities=26% Similarity=0.402 Sum_probs=76.4
Q ss_pred ecccceecCCccchhhhhHHHHhhhc--ceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccc
Q psy12535 41 VGDKGVSLSGGQRARISLARAVYKRA--DVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRG 118 (209)
Q Consensus 41 vg~~g~~LSgGqrQRlaiARal~~~p--~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (209)
....+.+||||||||++|||||+.+| ++|||||||++||+.+...+++.+
T Consensus 131 ~~~~~~~LSgG~~qrv~laral~~~p~~~llllDEPt~gLD~~~~~~l~~~l---------------------------- 182 (226)
T cd03270 131 LSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETL---------------------------- 182 (226)
T ss_pred ccCccCcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHH----------------------------
Confidence 56778899999999999999999998 599999999999999888876632
Q ss_pred hhhhhhhhccccceeeeeeeehheecccceEEEe------eccceeecc
Q psy12535 119 ALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLL------EKGSVEAFG 161 (209)
Q Consensus 119 ~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L------~~G~i~~~G 161 (209)
+....++.|+|+|||+++.+..||+|++| ++|+|+++|
T Consensus 183 -----~~~~~~g~tii~itH~~~~~~~~d~i~~l~~~~~~~~G~iv~~g 226 (226)
T cd03270 183 -----KRLRDLGNTVLVVEHDEDTIRAADHVIDIGPGAGVHGGEIVAQG 226 (226)
T ss_pred -----HHHHhCCCEEEEEEeCHHHHHhCCEEEEeCCCccccCCEEEecC
Confidence 22233588999999999988789999999 999999876
No 258
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.83 E-value=1.6e-21 Score=183.57 Aligned_cols=99 Identities=17% Similarity=0.367 Sum_probs=84.1
Q ss_pred CceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccc
Q psy12535 37 DRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGV 116 (209)
Q Consensus 37 ~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (209)
+.........+|||||||||+|||||+.+|+||||||||++||+.+...+.+.
T Consensus 130 l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~--------------------------- 182 (510)
T PRK15439 130 CQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSR--------------------------- 182 (510)
T ss_pred CCccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHH---------------------------
Confidence 33445667789999999999999999999999999999999999988888663
Q ss_pred cchhhhhhhhccccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhh
Q psy12535 117 RGALSLVRTSFLKEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLA 168 (209)
Q Consensus 117 ~~~~~~~~~~~~~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~ 168 (209)
++....+++|||++||+++.+. .||+|++|++|++++.|+++++..
T Consensus 183 ------l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 229 (510)
T PRK15439 183 ------IRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLST 229 (510)
T ss_pred ------HHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHcCH
Confidence 3333335789999999999886 489999999999999999888754
No 259
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=2e-21 Score=170.75 Aligned_cols=96 Identities=27% Similarity=0.451 Sum_probs=82.3
Q ss_pred eecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccch
Q psy12535 40 LVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGA 119 (209)
Q Consensus 40 ~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (209)
.....+..|||||||||+|||||+.+|++|||||||++||+.+...+.+.
T Consensus 175 ~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~------------------------------ 224 (286)
T PRK14275 175 RLDKNALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDL------------------------------ 224 (286)
T ss_pred HhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHH------------------------------
Confidence 34566789999999999999999999999999999999999988877663
Q ss_pred hhhhhhhccccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhc
Q psy12535 120 LSLVRTSFLKEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLAS 169 (209)
Q Consensus 120 ~~~~~~~~~~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~ 169 (209)
++... +++|||++||+++.+. .+|+|++|++|++++.|+++++..+
T Consensus 225 ---L~~~~-~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~~~~~~~ 271 (286)
T PRK14275 225 ---IQELR-GSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQLFTN 271 (286)
T ss_pred ---HHHHh-cCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 22222 3579999999999976 4899999999999999999988654
No 260
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.83 E-value=1.7e-21 Score=183.36 Aligned_cols=96 Identities=17% Similarity=0.399 Sum_probs=82.8
Q ss_pred eecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccch
Q psy12535 40 LVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGA 119 (209)
Q Consensus 40 ~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (209)
.....+.+|||||||||+|||||+.+|+||||||||++||+.+...+.+.
T Consensus 396 ~~~~~~~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~------------------------------ 445 (510)
T PRK15439 396 HAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQL------------------------------ 445 (510)
T ss_pred CccCccccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHH------------------------------
Confidence 45667789999999999999999999999999999999999988888663
Q ss_pred hhhhhhhccccceeeeeeeehheecc-cceEEEeeccceeecchhhHHhh
Q psy12535 120 LSLVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQLLA 168 (209)
Q Consensus 120 ~~~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l~~ 168 (209)
++....++.|||+|||+++.+.. ||+|++|++|+++..|+++++..
T Consensus 446 ---l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~~~~~~~~~~ 492 (510)
T PRK15439 446 ---IRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEISGALTGAAINV 492 (510)
T ss_pred ---HHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEccccCCH
Confidence 23333357899999999999875 89999999999999998877653
No 261
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.83 E-value=1.7e-21 Score=182.20 Aligned_cols=99 Identities=22% Similarity=0.252 Sum_probs=83.5
Q ss_pred CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535 36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG 115 (209)
Q Consensus 36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (209)
|+.......+.+|||||||||+|||||+.+|+||||||||++||+.+...+.+.
T Consensus 123 ~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~-------------------------- 176 (491)
T PRK10982 123 DIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTI-------------------------- 176 (491)
T ss_pred CCCCCccCchhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHH--------------------------
Confidence 334445667789999999999999999999999999999999999988888663
Q ss_pred ccchhhhhhhhccccceeeeeeeehheec-ccceEEEeeccceeecchhhHHh
Q psy12535 116 VRGALSLVRTSFLKEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLL 167 (209)
Q Consensus 116 ~~~~~~~~~~~~~~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~ 167 (209)
++.....++|||+|||+++.+. .||+|++|++|++++.|+++++.
T Consensus 177 -------l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 222 (491)
T PRK10982 177 -------IRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGLT 222 (491)
T ss_pred -------HHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhhCC
Confidence 2232335789999999999876 48999999999999999887763
No 262
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.83 E-value=2.4e-21 Score=168.36 Aligned_cols=97 Identities=27% Similarity=0.439 Sum_probs=83.2
Q ss_pred eeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccc
Q psy12535 39 TLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRG 118 (209)
Q Consensus 39 t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (209)
+.++..+.+|||||+||++||||++.+|++|||||||++||+.+...+.+.
T Consensus 155 ~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~----------------------------- 205 (267)
T PRK14237 155 DDLHKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEET----------------------------- 205 (267)
T ss_pred hhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH-----------------------------
Confidence 345677889999999999999999999999999999999999888777663
Q ss_pred hhhhhhhhccccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhc
Q psy12535 119 ALSLVRTSFLKEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLAS 169 (209)
Q Consensus 119 ~~~~~~~~~~~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~ 169 (209)
+... .++.|||++||+++.+. .||+|++|++|++++.|+++++...
T Consensus 206 ----l~~~-~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 252 (267)
T PRK14237 206 ----MFEL-KKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTRNIFTN 252 (267)
T ss_pred ----HHHH-hcCCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCHHHHhcC
Confidence 2222 23689999999999875 5899999999999999999998653
No 263
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=2.8e-21 Score=168.73 Aligned_cols=96 Identities=32% Similarity=0.563 Sum_probs=82.3
Q ss_pred eecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccch
Q psy12535 40 LVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGA 119 (209)
Q Consensus 40 ~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (209)
.....+.+|||||+|||+|||||+.+|+||||||||++||+.+...+.+.+
T Consensus 154 ~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L----------------------------- 204 (274)
T PRK14265 154 KLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELC----------------------------- 204 (274)
T ss_pred HhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHH-----------------------------
Confidence 345667899999999999999999999999999999999999888776632
Q ss_pred hhhhhhhccccceeeeeeeehheec-ccceEEEee---------ccceeecchhhHHhhc
Q psy12535 120 LSLVRTSFLKEKTVMLITHQIQYLT-HVDHVMLLE---------KGSVEAFGTTTQLLAS 169 (209)
Q Consensus 120 ~~~~~~~~~~~~TiIvitH~l~~l~-~~DrV~~L~---------~G~i~~~G~~~~l~~~ 169 (209)
.... +++|||++||+++.+. .+|++++|+ +|++++.|+++++..+
T Consensus 205 ----~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~~~g~~~~~~~~ 259 (274)
T PRK14265 205 ----LELK-EQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLVEFSPTEQMFGS 259 (274)
T ss_pred ----HHHh-cCCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEEEeCCHHHHHhC
Confidence 2222 3689999999999886 589999997 8999999999998754
No 264
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.83 E-value=2.8e-21 Score=161.14 Aligned_cols=88 Identities=26% Similarity=0.385 Sum_probs=75.2
Q ss_pred eecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhhhhh
Q psy12535 46 VSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRT 125 (209)
Q Consensus 46 ~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (209)
.+|||||+||++||||++.+|++|||||||++||+.+...+++. +.+
T Consensus 103 ~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~---------------------------------L~~ 149 (200)
T cd03217 103 EGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEV---------------------------------INK 149 (200)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHH---------------------------------HHH
Confidence 58999999999999999999999999999999999888777663 222
Q ss_pred hccccceeeeeeeehheec--ccceEEEeeccceeecchhhHHh
Q psy12535 126 SFLKEKTVMLITHQIQYLT--HVDHVMLLEKGSVEAFGTTTQLL 167 (209)
Q Consensus 126 ~~~~~~TiIvitH~l~~l~--~~DrV~~L~~G~i~~~G~~~~l~ 167 (209)
...+++|||++||+++.+. .+|++++|++|++.+.|+. ++.
T Consensus 150 ~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~~~~-~~~ 192 (200)
T cd03217 150 LREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSGDK-ELA 192 (200)
T ss_pred HHHCCCEEEEEecCHHHHHHhhCCEEEEEECCEEEEEccH-HHH
Confidence 2234789999999999887 5899999999999999844 443
No 265
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.83 E-value=2.5e-21 Score=163.78 Aligned_cols=91 Identities=27% Similarity=0.437 Sum_probs=75.1
Q ss_pred ceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccccc
Q psy12535 38 RTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVR 117 (209)
Q Consensus 38 ~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (209)
..........|||||+||++|||||+.+|++|||||||++||+.+...+.+.
T Consensus 134 ~~~~~~~~~~LS~G~~qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~---------------------------- 185 (226)
T cd03234 134 TRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVST---------------------------- 185 (226)
T ss_pred hhhhcccccCcCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHH----------------------------
Confidence 3344556789999999999999999999999999999999999988877663
Q ss_pred chhhhhhhhccccceeeeeeeeh-hee-cccceEEEeeccceeecc
Q psy12535 118 GALSLVRTSFLKEKTVMLITHQI-QYL-THVDHVMLLEKGSVEAFG 161 (209)
Q Consensus 118 ~~~~~~~~~~~~~~TiIvitH~l-~~l-~~~DrV~~L~~G~i~~~G 161 (209)
+.+....+.|+|++||++ +.+ ..+|+|++|++|++++.|
T Consensus 186 -----l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 186 -----LSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred -----HHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 222233478999999998 355 568999999999998765
No 266
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.83 E-value=2.4e-21 Score=158.04 Aligned_cols=77 Identities=35% Similarity=0.548 Sum_probs=67.8
Q ss_pred cCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhhhhhhc
Q psy12535 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSF 127 (209)
Q Consensus 48 LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (209)
|||||+||++||||++.+|++|||||||++||+.+...+.+.+ +...
T Consensus 97 LS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l---------------------------------~~~~ 143 (173)
T cd03246 97 LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAI---------------------------------AALK 143 (173)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHH---------------------------------HHHH
Confidence 9999999999999999999999999999999999888886632 2223
Q ss_pred cccceeeeeeeehheecccceEEEeeccce
Q psy12535 128 LKEKTVMLITHQIQYLTHVDHVMLLEKGSV 157 (209)
Q Consensus 128 ~~~~TiIvitH~l~~l~~~DrV~~L~~G~i 157 (209)
.+++|+|++||+++.+..+|+|++|++|++
T Consensus 144 ~~~~tii~~sh~~~~~~~~d~v~~l~~G~i 173 (173)
T cd03246 144 AAGATRIVIAHRPETLASADRILVLEDGRV 173 (173)
T ss_pred hCCCEEEEEeCCHHHHHhCCEEEEEECCCC
Confidence 347899999999998877999999999975
No 267
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.83 E-value=2e-21 Score=182.79 Aligned_cols=96 Identities=20% Similarity=0.425 Sum_probs=82.4
Q ss_pred eecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccch
Q psy12535 40 LVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGA 119 (209)
Q Consensus 40 ~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (209)
.....+.+|||||||||+|||||+.+|+||||||||++||+.+...+.+.+
T Consensus 420 ~~~~~~~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l----------------------------- 470 (520)
T TIGR03269 420 ILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSI----------------------------- 470 (520)
T ss_pred hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH-----------------------------
Confidence 346677899999999999999999999999999999999999888887632
Q ss_pred hhhhhhhcc-ccceeeeeeeehheecc-cceEEEeeccceeecchhhHHhh
Q psy12535 120 LSLVRTSFL-KEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQLLA 168 (209)
Q Consensus 120 ~~~~~~~~~-~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l~~ 168 (209)
+.... .+.|||+|||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 471 ----~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 517 (520)
T TIGR03269 471 ----LKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDPEEIVE 517 (520)
T ss_pred ----HHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 22222 37899999999998864 89999999999999999888753
No 268
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.83 E-value=1.9e-21 Score=182.44 Aligned_cols=96 Identities=19% Similarity=0.280 Sum_probs=81.5
Q ss_pred eeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccc
Q psy12535 39 TLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRG 118 (209)
Q Consensus 39 t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (209)
........+|||||||||+|||||+.+|+||||||||++||+.+...+.+.
T Consensus 133 ~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~----------------------------- 183 (501)
T PRK10762 133 FSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRV----------------------------- 183 (501)
T ss_pred CCccCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHH-----------------------------
Confidence 344566789999999999999999999999999999999999988888663
Q ss_pred hhhhhhhhccccceeeeeeeehheecc-cceEEEeeccceeecchhhHHh
Q psy12535 119 ALSLVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQLL 167 (209)
Q Consensus 119 ~~~~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l~ 167 (209)
++.....++|||+|||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 184 ----l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (501)
T PRK10762 184 ----IRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADLT 229 (501)
T ss_pred ----HHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCcCcCC
Confidence 22323347899999999998864 8999999999999999887653
No 269
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.83 E-value=2e-21 Score=168.05 Aligned_cols=96 Identities=30% Similarity=0.381 Sum_probs=79.0
Q ss_pred CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535 36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG 115 (209)
Q Consensus 36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (209)
|+.......+.+||||||||++|||||+.+|++|||||||++||+.+...+.+.
T Consensus 117 gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~-------------------------- 170 (255)
T PRK11248 117 GLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTL-------------------------- 170 (255)
T ss_pred CChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHH--------------------------
Confidence 344445567789999999999999999999999999999999999988877663
Q ss_pred ccchhhhhhhhc-cccceeeeeeeehheecc-cceEEEee--ccceeecchhh
Q psy12535 116 VRGALSLVRTSF-LKEKTVMLITHQIQYLTH-VDHVMLLE--KGSVEAFGTTT 164 (209)
Q Consensus 116 ~~~~~~~~~~~~-~~~~TiIvitH~l~~l~~-~DrV~~L~--~G~i~~~G~~~ 164 (209)
+.... ..++|||++||+++.+.. ||+|++|+ +|++++.++.+
T Consensus 171 -------L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~~ 216 (255)
T PRK11248 171 -------LLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPLN 216 (255)
T ss_pred -------HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecCC
Confidence 22222 247899999999998764 89999998 59999887653
No 270
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=4e-21 Score=165.93 Aligned_cols=96 Identities=31% Similarity=0.497 Sum_probs=81.8
Q ss_pred eecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccch
Q psy12535 40 LVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGA 119 (209)
Q Consensus 40 ~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (209)
..+..+..|||||+||++|||||+.+|++|||||||++||+.+...+.+.
T Consensus 143 ~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~------------------------------ 192 (259)
T PRK14260 143 KLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEEL------------------------------ 192 (259)
T ss_pred HhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHH------------------------------
Confidence 34567789999999999999999999999999999999999988877663
Q ss_pred hhhhhhhccccceeeeeeeehheecc-cceEEEee-----ccceeecchhhHHhhc
Q psy12535 120 LSLVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLE-----KGSVEAFGTTTQLLAS 169 (209)
Q Consensus 120 ~~~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~-----~G~i~~~G~~~~l~~~ 169 (209)
++... +++|||++||+++.+.. ||++++|+ +|++++.|+++++.+.
T Consensus 193 ---l~~~~-~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~~~~~~~~~ 244 (259)
T PRK14260 193 ---IHSLR-SELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEFGVTTQIFSN 244 (259)
T ss_pred ---HHHHh-cCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEeCCHHHHhcC
Confidence 22222 35899999999999865 89999997 5999999999998653
No 271
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=4.2e-21 Score=166.59 Aligned_cols=95 Identities=33% Similarity=0.500 Sum_probs=81.5
Q ss_pred ecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchh
Q psy12535 41 VGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGAL 120 (209)
Q Consensus 41 vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (209)
.+..+.+|||||+||++|||||+.+|++|||||||++||+.+...+++.
T Consensus 143 ~~~~~~~LS~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~------------------------------- 191 (261)
T PRK14263 143 LKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEEL------------------------------- 191 (261)
T ss_pred hhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHH-------------------------------
Confidence 3456779999999999999999999999999999999999988887663
Q ss_pred hhhhhhccccceeeeeeeehheec-ccceEEEee--------ccceeecchhhHHhhc
Q psy12535 121 SLVRTSFLKEKTVMLITHQIQYLT-HVDHVMLLE--------KGSVEAFGTTTQLLAS 169 (209)
Q Consensus 121 ~~~~~~~~~~~TiIvitH~l~~l~-~~DrV~~L~--------~G~i~~~G~~~~l~~~ 169 (209)
+++. .+++|+|++||+++.+. .+|+|++|+ +|++++.|+++++.++
T Consensus 192 --l~~~-~~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~~g~~~~~~~~ 246 (261)
T PRK14263 192 --MVEL-KKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEMGPTAQIFQN 246 (261)
T ss_pred --HHHH-hcCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEEEeCCHHHHHhC
Confidence 2232 24689999999999875 589999996 8999999999998754
No 272
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.83 E-value=3.1e-21 Score=164.58 Aligned_cols=97 Identities=32% Similarity=0.473 Sum_probs=82.3
Q ss_pred eeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccc
Q psy12535 39 TLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRG 118 (209)
Q Consensus 39 t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (209)
........+||+||+||++|||||+.+|+++||||||++||+.+...+.+.+
T Consensus 122 ~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l---------------------------- 173 (237)
T TIGR00968 122 GLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWL---------------------------- 173 (237)
T ss_pred hHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHH----------------------------
Confidence 3345566799999999999999999999999999999999999888776632
Q ss_pred hhhhhhhhccc-cceeeeeeeehheecc-cceEEEeeccceeecchhhHHhh
Q psy12535 119 ALSLVRTSFLK-EKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQLLA 168 (209)
Q Consensus 119 ~~~~~~~~~~~-~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l~~ 168 (209)
.....+ ++|||++||+++.+.. +|+|++|++|++++.|+.+++..
T Consensus 174 -----~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~ 220 (237)
T TIGR00968 174 -----RKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYD 220 (237)
T ss_pred -----HHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHHc
Confidence 222223 7899999999998754 89999999999999999998864
No 273
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=3.4e-21 Score=166.85 Aligned_cols=97 Identities=28% Similarity=0.459 Sum_probs=83.0
Q ss_pred eeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccc
Q psy12535 39 TLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRG 118 (209)
Q Consensus 39 t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (209)
+.++..+.+|||||+||++|||||+.+|++|||||||++||+.+...+.+.
T Consensus 153 ~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~----------------------------- 203 (265)
T PRK14252 153 DRLGDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEEL----------------------------- 203 (265)
T ss_pred HHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHH-----------------------------
Confidence 445677789999999999999999999999999999999999988777663
Q ss_pred hhhhhhhhccccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhc
Q psy12535 119 ALSLVRTSFLKEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLAS 169 (209)
Q Consensus 119 ~~~~~~~~~~~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~ 169 (209)
+++.. ++.|||+|||+++.+. .||+|++|++|++++.|+.+++..+
T Consensus 204 ----l~~l~-~~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 250 (265)
T PRK14252 204 ----ISDLK-NKVTILIVTHNMQQAARVSDYTAYMYMGELIEFGATDTIFIK 250 (265)
T ss_pred ----HHHHH-hCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 22222 3579999999999986 5899999999999999999888653
No 274
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=4.6e-21 Score=164.22 Aligned_cols=95 Identities=25% Similarity=0.436 Sum_probs=81.7
Q ss_pred ecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchh
Q psy12535 41 VGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGAL 120 (209)
Q Consensus 41 vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (209)
++..+..||+|||||++|||||+.+|+||||||||++||+.+...+.+.
T Consensus 140 ~~~~~~~LS~Gq~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~------------------------------- 188 (250)
T PRK14266 140 LDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDL------------------------------- 188 (250)
T ss_pred HhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHH-------------------------------
Confidence 4566789999999999999999999999999999999999888777653
Q ss_pred hhhhhhccccceeeeeeeehheecc-cceEEEeeccceeecchhhHHhhc
Q psy12535 121 SLVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQLLAS 169 (209)
Q Consensus 121 ~~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l~~~ 169 (209)
++.. .++.|||++||+++.+.. +|+|++|++|++++.|+++++...
T Consensus 189 --l~~~-~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~~~~~~~ 235 (250)
T PRK14266 189 --IHKL-KEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQIFIN 235 (250)
T ss_pred --HHHH-hcCCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCHHHHHhC
Confidence 2222 236899999999998765 799999999999999999998644
No 275
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=3.6e-21 Score=170.71 Aligned_cols=99 Identities=26% Similarity=0.452 Sum_probs=83.0
Q ss_pred CceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccc
Q psy12535 37 DRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGV 116 (209)
Q Consensus 37 ~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (209)
+.+.++..+.+|||||+|||+|||||+.+|+||||||||++||+.+...+.+.
T Consensus 190 ~~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~--------------------------- 242 (305)
T PRK14264 190 VNDRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDL--------------------------- 242 (305)
T ss_pred hhHHhcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH---------------------------
Confidence 34556777889999999999999999999999999999999999888877663
Q ss_pred cchhhhhhhhccccceeeeeeeehheec-ccceE-EEeeccceeecchhhHHhhc
Q psy12535 117 RGALSLVRTSFLKEKTVMLITHQIQYLT-HVDHV-MLLEKGSVEAFGTTTQLLAS 169 (209)
Q Consensus 117 ~~~~~~~~~~~~~~~TiIvitH~l~~l~-~~DrV-~~L~~G~i~~~G~~~~l~~~ 169 (209)
++... +++|||++||+++.+. .+|++ ++|++|++++.|+++++...
T Consensus 243 ------L~~~~-~~~tiiivtH~~~~i~~~~d~i~~~l~~G~i~~~g~~~~~~~~ 290 (305)
T PRK14264 243 ------IEELA-EEYTVVVVTHNMQQAARISDQTAVFLTGGELVEYDDTDKIFEN 290 (305)
T ss_pred ------HHHHh-cCCEEEEEEcCHHHHHHhcCEEEEEecCCEEEEeCCHHHHHhC
Confidence 22222 2479999999999976 48997 57799999999999988653
No 276
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.83 E-value=3e-21 Score=181.07 Aligned_cols=95 Identities=17% Similarity=0.292 Sum_probs=81.6
Q ss_pred eecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccch
Q psy12535 40 LVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGA 119 (209)
Q Consensus 40 ~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (209)
.....+.+|||||||||+|||||+.+|+||||||||++||+.+...+++.
T Consensus 389 ~~~~~~~~LSgGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~------------------------------ 438 (501)
T PRK11288 389 SREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNV------------------------------ 438 (501)
T ss_pred CccCccccCCHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHH------------------------------
Confidence 34566789999999999999999999999999999999999988888663
Q ss_pred hhhhhhhccccceeeeeeeehheecc-cceEEEeeccceeecchhhHHh
Q psy12535 120 LSLVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQLL 167 (209)
Q Consensus 120 ~~~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l~ 167 (209)
+......+.|||+|||+++.+.. ||++++|++|++++.|+++++.
T Consensus 439 ---l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g~i~~~~~~~~~~ 484 (501)
T PRK11288 439 ---IYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIAGELAREQAT 484 (501)
T ss_pred ---HHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECCEEEEEEccccCC
Confidence 22333458899999999999864 8999999999999999887654
No 277
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.82 E-value=3.2e-21 Score=182.67 Aligned_cols=106 Identities=19% Similarity=0.331 Sum_probs=87.3
Q ss_pred CceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccc
Q psy12535 37 DRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGV 116 (209)
Q Consensus 37 ~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (209)
+...+...+.+||||||||++|||||+.+|++|||||||++||+.+...+++.
T Consensus 133 L~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr~~Llel--------------------------- 185 (549)
T PRK13545 133 IGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDK--------------------------- 185 (549)
T ss_pred ChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHH---------------------------
Confidence 33345566789999999999999999999999999999999999988777663
Q ss_pred cchhhhhhhhccccceeeeeeeehheecc-cceEEEeeccceeecchhhHHhhccCCchh
Q psy12535 117 RGALSLVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQLLASGLDFTQ 175 (209)
Q Consensus 117 ~~~~~~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l~~~~~~~~~ 175 (209)
+......++|||++||+++.+.. ||+|++|++|++++.|+++++......|..
T Consensus 186 ------L~el~~~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv~~G~~~el~~~~~~~~~ 239 (549)
T PRK13545 186 ------MNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVDHYDEFLK 239 (549)
T ss_pred ------HHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhhHHHHHH
Confidence 22223357899999999998865 899999999999999999998766444433
No 278
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.82 E-value=3.6e-21 Score=164.29 Aligned_cols=92 Identities=23% Similarity=0.333 Sum_probs=76.3
Q ss_pred CceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccc
Q psy12535 37 DRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGV 116 (209)
Q Consensus 37 ~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (209)
+.........+||||||||++|||||+.+|++|||||||++||+.+...+.+.+
T Consensus 143 l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l-------------------------- 196 (236)
T cd03267 143 LEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFL-------------------------- 196 (236)
T ss_pred ChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHH--------------------------
Confidence 333345567789999999999999999999999999999999999888886632
Q ss_pred cchhhhhhhhcc-ccceeeeeeeehheecc-cceEEEeeccceeecc
Q psy12535 117 RGALSLVRTSFL-KEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFG 161 (209)
Q Consensus 117 ~~~~~~~~~~~~-~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G 161 (209)
..... .++|||++||+++.+.. +|+|++|++|++++.|
T Consensus 197 -------~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 197 -------KEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred -------HHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEecC
Confidence 22222 37899999999998765 8999999999998764
No 279
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=5.4e-21 Score=168.09 Aligned_cols=96 Identities=29% Similarity=0.507 Sum_probs=80.6
Q ss_pred eecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccch
Q psy12535 40 LVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGA 119 (209)
Q Consensus 40 ~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (209)
.++.++.+|||||||||+|||||+.+|+||||||||++||+.+...+.+.
T Consensus 173 ~~~~~~~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~------------------------------ 222 (285)
T PRK14254 173 QLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDL------------------------------ 222 (285)
T ss_pred HHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHH------------------------------
Confidence 34667789999999999999999999999999999999999988877663
Q ss_pred hhhhhhhccccceeeeeeeehheecc-cceEE-EeeccceeecchhhHHhhc
Q psy12535 120 LSLVRTSFLKEKTVMLITHQIQYLTH-VDHVM-LLEKGSVEAFGTTTQLLAS 169 (209)
Q Consensus 120 ~~~~~~~~~~~~TiIvitH~l~~l~~-~DrV~-~L~~G~i~~~G~~~~l~~~ 169 (209)
++... +++|||++||+++.+.. +|+++ +|++|+|++.|+++++..+
T Consensus 223 ---L~~~~-~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~~~~~~ 270 (285)
T PRK14254 223 ---IEELA-EEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDKIFEN 270 (285)
T ss_pred ---HHHHh-cCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHHHHHhC
Confidence 22222 24799999999999765 89975 6799999999999887643
No 280
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.82 E-value=4.7e-21 Score=155.39 Aligned_cols=80 Identities=29% Similarity=0.473 Sum_probs=69.3
Q ss_pred ecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhhhhhh
Q psy12535 47 SLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTS 126 (209)
Q Consensus 47 ~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (209)
+|||||+||++||||++.+|++|||||||++||+.+...+.+. ++..
T Consensus 82 qLS~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~---------------------------------l~~~ 128 (163)
T cd03216 82 QLSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKV---------------------------------IRRL 128 (163)
T ss_pred ecCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHH---------------------------------HHHH
Confidence 3999999999999999999999999999999999988887663 2232
Q ss_pred ccccceeeeeeeehheecc-cceEEEeeccceee
Q psy12535 127 FLKEKTVMLITHQIQYLTH-VDHVMLLEKGSVEA 159 (209)
Q Consensus 127 ~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~ 159 (209)
..++.|+|++||+++.+.. +|++++|++|++++
T Consensus 129 ~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 129 RAQGVAVIFISHRLDEVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred HHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 3347899999999998764 89999999999864
No 281
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.82 E-value=4.6e-21 Score=168.84 Aligned_cols=102 Identities=24% Similarity=0.442 Sum_probs=86.0
Q ss_pred CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535 36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG 115 (209)
Q Consensus 36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (209)
|...++.+.+..|||||||||||+|||+..|++|+||||+|+||...+.+++-
T Consensus 117 GI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~Eilp--------------------------- 169 (352)
T COG4148 117 GIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILP--------------------------- 169 (352)
T ss_pred CcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHHH---------------------------
Confidence 56666777778999999999999999999999999999999999987777654
Q ss_pred ccchhhhhhhhcc-ccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhcc
Q psy12535 116 VRGALSLVRTSFL-KEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLASG 170 (209)
Q Consensus 116 ~~~~~~~~~~~~~-~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~~ 170 (209)
.+.++.. -+.-|++|||.++++. .+|+|++|++|+|.+.|..++++.+.
T Consensus 170 ------ylERL~~e~~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A~g~~e~v~~~~ 220 (352)
T COG4148 170 ------YLERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWGSP 220 (352)
T ss_pred ------HHHHHHHhcCCCEEEEecCHHHHHhhhheEEEecCCeEEecCcHHHHhcCc
Confidence 2223222 2568999999999875 58999999999999999999998753
No 282
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.82 E-value=3.7e-21 Score=180.44 Aligned_cols=94 Identities=20% Similarity=0.377 Sum_probs=81.3
Q ss_pred eecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccch
Q psy12535 40 LVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGA 119 (209)
Q Consensus 40 ~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (209)
.....+.+|||||||||+|||||+.+|+||||||||++||+.+...+.+.
T Consensus 388 ~~~~~~~~LSgGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~------------------------------ 437 (501)
T PRK10762 388 SMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQL------------------------------ 437 (501)
T ss_pred CccCchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHH------------------------------
Confidence 35667789999999999999999999999999999999999988888663
Q ss_pred hhhhhhhccccceeeeeeeehheecc-cceEEEeeccceeecchhhHH
Q psy12535 120 LSLVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQL 166 (209)
Q Consensus 120 ~~~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l 166 (209)
++....+|.|||++||+++.+.. ||+|++|++|+++..|+++++
T Consensus 438 ---l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 482 (501)
T PRK10762 438 ---INQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRISGEFTREQA 482 (501)
T ss_pred ---HHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEeccccC
Confidence 33333358899999999998865 899999999999998887765
No 283
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.82 E-value=5.5e-21 Score=158.48 Aligned_cols=82 Identities=22% Similarity=0.414 Sum_probs=70.4
Q ss_pred ecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhhhhhh
Q psy12535 47 SLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTS 126 (209)
Q Consensus 47 ~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (209)
+|||||+||++||||++.+|++|||||||++||+.+...+++. ++..
T Consensus 108 ~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~---------------------------------l~~~ 154 (192)
T cd03232 108 GLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRF---------------------------------LKKL 154 (192)
T ss_pred cCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHH---------------------------------HHHH
Confidence 8999999999999999999999999999999999988887663 2222
Q ss_pred ccccceeeeeeeehhe-e-cccceEEEeec-cceeecc
Q psy12535 127 FLKEKTVMLITHQIQY-L-THVDHVMLLEK-GSVEAFG 161 (209)
Q Consensus 127 ~~~~~TiIvitH~l~~-l-~~~DrV~~L~~-G~i~~~G 161 (209)
...++|+|++||+++. + ..+|+|++|++ |++++.|
T Consensus 155 ~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 155 ADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred HHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 2347899999999984 4 56899999999 9998765
No 284
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.82 E-value=5.1e-21 Score=165.49 Aligned_cols=108 Identities=23% Similarity=0.405 Sum_probs=85.3
Q ss_pred CceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccc
Q psy12535 37 DRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGV 116 (209)
Q Consensus 37 ~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (209)
+...+...+..||||||||++|||||+.+|++|||||||++||+.+...+++.+
T Consensus 110 l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L-------------------------- 163 (251)
T PRK09544 110 AGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLI-------------------------- 163 (251)
T ss_pred ChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHH--------------------------
Confidence 333445567799999999999999999999999999999999999888776632
Q ss_pred cchhhhhhhhccc-cceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhccCCchhccCC
Q psy12535 117 RGALSLVRTSFLK-EKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLASGLDFTQLLDA 179 (209)
Q Consensus 117 ~~~~~~~~~~~~~-~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~~~~~~~~~~~ 179 (209)
.....+ ++|||++||+++.+. .+|+|++|++ ++++.|+++++... ..+..++..
T Consensus 164 -------~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~-~i~~~g~~~~~~~~-~~~~~~~~~ 219 (251)
T PRK09544 164 -------DQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH-HICCSGTPEVVSLH-PEFISMFGP 219 (251)
T ss_pred -------HHHHHhcCCEEEEEecCHHHHHHhCCEEEEECC-ceEeeCCHHHHhCC-HHHHHHhCC
Confidence 222223 789999999999975 5899999964 79999999988643 344455543
No 285
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.82 E-value=5.9e-21 Score=179.26 Aligned_cols=91 Identities=15% Similarity=0.341 Sum_probs=78.0
Q ss_pred eecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccch
Q psy12535 40 LVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGA 119 (209)
Q Consensus 40 ~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (209)
.....+.+|||||||||+|||||+.+|+||||||||++||+.+...+.+.
T Consensus 402 ~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~------------------------------ 451 (510)
T PRK09700 402 SVNQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKV------------------------------ 451 (510)
T ss_pred CccCccccCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHH------------------------------
Confidence 35667789999999999999999999999999999999999988888663
Q ss_pred hhhhhhhccccceeeeeeeehheec-ccceEEEeeccceeecchh
Q psy12535 120 LSLVRTSFLKEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTT 163 (209)
Q Consensus 120 ~~~~~~~~~~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~ 163 (209)
++....+++|||+|||+++.+. .||+|++|++|+++..++.
T Consensus 452 ---l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~~~ 493 (510)
T PRK09700 452 ---MRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQILTN 493 (510)
T ss_pred ---HHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEecC
Confidence 3332335889999999999876 4899999999999987765
No 286
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.82 E-value=4.4e-21 Score=162.52 Aligned_cols=93 Identities=27% Similarity=0.343 Sum_probs=77.7
Q ss_pred eeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccc
Q psy12535 39 TLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRG 118 (209)
Q Consensus 39 t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (209)
+.....+.+|||||+|||+|||||+.+|++|||||||++||+.+...+.+.
T Consensus 129 ~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~----------------------------- 179 (225)
T PRK10247 129 TILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEI----------------------------- 179 (225)
T ss_pred HHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH-----------------------------
Confidence 456677889999999999999999999999999999999999887777653
Q ss_pred hhhhhhhhcc-ccceeeeeeeehheecccceEEEee-ccceeecchhh
Q psy12535 119 ALSLVRTSFL-KEKTVMLITHQIQYLTHVDHVMLLE-KGSVEAFGTTT 164 (209)
Q Consensus 119 ~~~~~~~~~~-~~~TiIvitH~l~~l~~~DrV~~L~-~G~i~~~G~~~ 164 (209)
+..... .++|||++||+++.+..||++++|+ ++..+++|+++
T Consensus 180 ----l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~~~~~~~ 223 (225)
T PRK10247 180 ----IHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQEARYE 223 (225)
T ss_pred ----HHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccchHhhhhhc
Confidence 222222 3789999999999988899999994 66777788774
No 287
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.82 E-value=1.3e-20 Score=181.40 Aligned_cols=102 Identities=24% Similarity=0.375 Sum_probs=87.7
Q ss_pred CCCCceeeccc--ceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhc
Q psy12535 34 PSGDRTLVGDK--GVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFG 111 (209)
Q Consensus 34 p~g~~t~vg~~--g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (209)
....+|.+|+. +..|||||||||+|||+|+.+|+|++|||||+|||+.+...+++.+
T Consensus 151 ~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsgLD~~~~~~l~~~L--------------------- 209 (617)
T TIGR00955 151 RKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVL--------------------- 209 (617)
T ss_pred hhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcchhHHHHHHHHHHH---------------------
Confidence 34668999974 4789999999999999999999999999999999999999887743
Q ss_pred ccccccchhhhhhhhccccceeeeeeeehh-e-ecccceEEEeeccceeecchhhHHhh
Q psy12535 112 SALGVRGALSLVRTSFLKEKTVMLITHQIQ-Y-LTHVDHVMLLEKGSVEAFGTTTQLLA 168 (209)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~TiIvitH~l~-~-l~~~DrV~~L~~G~i~~~G~~~~l~~ 168 (209)
++...+|+|||+++|+++ . ...+|+|++|++|++++.|+++++..
T Consensus 210 ------------~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~~ 256 (617)
T TIGR00955 210 ------------KGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVP 256 (617)
T ss_pred ------------HHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHHH
Confidence 222345899999999986 3 46789999999999999999998854
No 288
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=1.1e-20 Score=163.62 Aligned_cols=96 Identities=25% Similarity=0.451 Sum_probs=82.3
Q ss_pred ecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchh
Q psy12535 41 VGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGAL 120 (209)
Q Consensus 41 vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (209)
.+..+..||+|||||++|||||+.+|+++||||||++||+.+...+.+.
T Consensus 147 ~~~~~~~LS~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~------------------------------- 195 (257)
T PRK14246 147 LNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKL------------------------------- 195 (257)
T ss_pred hcCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHH-------------------------------
Confidence 4567789999999999999999999999999999999999888777653
Q ss_pred hhhhhhccccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhcc
Q psy12535 121 SLVRTSFLKEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLASG 170 (209)
Q Consensus 121 ~~~~~~~~~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~~ 170 (209)
+... .++.|||++||+++.+. .||++++|++|++++.|+++++....
T Consensus 196 --l~~~-~~~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~~~~~~~~~ 243 (257)
T PRK14246 196 --ITEL-KNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIFTSP 243 (257)
T ss_pred --HHHH-hcCcEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCC
Confidence 2222 23589999999999885 58999999999999999999987643
No 289
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.81 E-value=5.8e-21 Score=178.80 Aligned_cols=91 Identities=20% Similarity=0.337 Sum_probs=78.4
Q ss_pred ccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhh
Q psy12535 43 DKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSL 122 (209)
Q Consensus 43 ~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (209)
..+.+|||||||||+|||||+.+|+||||||||++||+.+...+.+.
T Consensus 137 ~~~~~LSgG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~--------------------------------- 183 (500)
T TIGR02633 137 RPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDI--------------------------------- 183 (500)
T ss_pred CchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH---------------------------------
Confidence 44678999999999999999999999999999999999988888663
Q ss_pred hhhhccccceeeeeeeehheecc-cceEEEeeccceeecchhhHH
Q psy12535 123 VRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQL 166 (209)
Q Consensus 123 ~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l 166 (209)
+++...+++|||+|||+++.+.. ||+|++|++|+++..|+++++
T Consensus 184 l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (500)
T TIGR02633 184 IRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMSTM 228 (500)
T ss_pred HHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecCcccC
Confidence 23333358899999999999865 899999999999998877654
No 290
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.81 E-value=8.4e-21 Score=157.77 Aligned_cols=82 Identities=29% Similarity=0.469 Sum_probs=70.0
Q ss_pred ecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhhhhhh
Q psy12535 47 SLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTS 126 (209)
Q Consensus 47 ~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (209)
+|||||+||++|||||+.+|+++||||||++||+.+.+.+++. +++.
T Consensus 111 ~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~---------------------------------l~~~ 157 (194)
T cd03213 111 GLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSL---------------------------------LRRL 157 (194)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHH---------------------------------HHHH
Confidence 7999999999999999999999999999999999988877663 2232
Q ss_pred ccccceeeeeeeehh-eec-ccceEEEeeccceeecc
Q psy12535 127 FLKEKTVMLITHQIQ-YLT-HVDHVMLLEKGSVEAFG 161 (209)
Q Consensus 127 ~~~~~TiIvitH~l~-~l~-~~DrV~~L~~G~i~~~G 161 (209)
..+++|+|++||+++ .+. .+|+|++|++|++++.|
T Consensus 158 ~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~ 194 (194)
T cd03213 158 ADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194 (194)
T ss_pred HhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence 334889999999996 454 58999999999998654
No 291
>PLN03211 ABC transporter G-25; Provisional
Probab=99.81 E-value=1.5e-20 Score=182.47 Aligned_cols=100 Identities=28% Similarity=0.441 Sum_probs=85.3
Q ss_pred CCceeecc-cceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccc
Q psy12535 36 GDRTLVGD-KGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSAL 114 (209)
Q Consensus 36 g~~t~vg~-~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (209)
..+|.+|. .+.+|||||||||+|||+|+.+|+||||||||+|||+.+...+.+.
T Consensus 194 ~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~------------------------- 248 (659)
T PLN03211 194 CENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLT------------------------- 248 (659)
T ss_pred hcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHH-------------------------
Confidence 34777765 4678999999999999999999999999999999999988888663
Q ss_pred cccchhhhhhhhccccceeeeeeeehhe-e-cccceEEEeeccceeecchhhHHhh
Q psy12535 115 GVRGALSLVRTSFLKEKTVMLITHQIQY-L-THVDHVMLLEKGSVEAFGTTTQLLA 168 (209)
Q Consensus 115 ~~~~~~~~~~~~~~~~~TiIvitH~l~~-l-~~~DrV~~L~~G~i~~~G~~~~l~~ 168 (209)
+++...+|+|||++||+++. + ..+|+|++|++|++++.|+++++..
T Consensus 249 --------L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~ 296 (659)
T PLN03211 249 --------LGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMA 296 (659)
T ss_pred --------HHHHHhCCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHH
Confidence 33333468999999999974 4 5689999999999999999998864
No 292
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.81 E-value=8.7e-21 Score=155.89 Aligned_cols=77 Identities=27% Similarity=0.481 Sum_probs=67.2
Q ss_pred cCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhhhhhhc
Q psy12535 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSF 127 (209)
Q Consensus 48 LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (209)
||+|||||++||||++.+|++|||||||++||+.+...+.+.+ +...
T Consensus 105 LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l---------------------------------~~~~ 151 (182)
T cd03215 105 LSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLI---------------------------------RELA 151 (182)
T ss_pred cCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHH---------------------------------HHHH
Confidence 9999999999999999999999999999999999888876632 2222
Q ss_pred cccceeeeeeeehheecc-cceEEEeeccce
Q psy12535 128 LKEKTVMLITHQIQYLTH-VDHVMLLEKGSV 157 (209)
Q Consensus 128 ~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i 157 (209)
.+++|+|++||+++.+.. +|+|++|++|++
T Consensus 152 ~~~~tiii~sh~~~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 152 DAGKAVLLISSELDELLGLCDRILVMYEGRI 182 (182)
T ss_pred HCCCEEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence 347899999999998865 899999999975
No 293
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.81 E-value=9.1e-21 Score=177.25 Aligned_cols=91 Identities=20% Similarity=0.390 Sum_probs=78.3
Q ss_pred ecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchh
Q psy12535 41 VGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGAL 120 (209)
Q Consensus 41 vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (209)
....+.+|||||||||+||||++.+|+||||||||+|||+.+...+++.
T Consensus 385 ~~~~~~~LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~------------------------------- 433 (491)
T PRK10982 385 HRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQL------------------------------- 433 (491)
T ss_pred cccccccCCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHH-------------------------------
Confidence 4667789999999999999999999999999999999999988888763
Q ss_pred hhhhhhccccceeeeeeeehheec-ccceEEEeeccceeecchhh
Q psy12535 121 SLVRTSFLKEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTT 164 (209)
Q Consensus 121 ~~~~~~~~~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~ 164 (209)
+......++|||++||+++.+. .||+|++|++|+++..++..
T Consensus 434 --l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~~~~~~ 476 (491)
T PRK10982 434 --IAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVAGIVDTK 476 (491)
T ss_pred --HHHHHHCCCEEEEECCChHHHHhhCCEEEEEECCEEEEEEccc
Confidence 2233345889999999999886 48999999999999776554
No 294
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.81 E-value=1.5e-20 Score=162.29 Aligned_cols=103 Identities=27% Similarity=0.378 Sum_probs=87.5
Q ss_pred CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535 36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG 115 (209)
Q Consensus 36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (209)
|+....++...+||+|||+||.|||||+.+|++||||||.+||.+.....+.+.
T Consensus 138 gL~~~a~~~A~~LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~-------------------------- 191 (250)
T COG0411 138 GLGELADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAEL-------------------------- 191 (250)
T ss_pred CCchhhcchhhcCChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHH--------------------------
Confidence 444455666779999999999999999999999999999999999888777663
Q ss_pred ccchhhhhhhhcc-ccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhccC
Q psy12535 116 VRGALSLVRTSFL-KEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLASGL 171 (209)
Q Consensus 116 ~~~~~~~~~~~~~-~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~~~ 171 (209)
+++... .+.||++|.|+++.+. .||||+||+.|+++++|+|+++.++..
T Consensus 192 -------i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IAeG~P~eV~~dp~ 242 (250)
T COG0411 192 -------IRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPEEVRNNPR 242 (250)
T ss_pred -------HHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCcccCCHHHHhcCHH
Confidence 333343 4689999999999875 589999999999999999999987653
No 295
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.81 E-value=4.7e-21 Score=159.08 Aligned_cols=92 Identities=26% Similarity=0.355 Sum_probs=77.7
Q ss_pred CceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccc
Q psy12535 37 DRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGV 116 (209)
Q Consensus 37 ~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (209)
+-..+.-.+.+||||++|||+||||++..|+||+.||||.+||..+...+.+.++..
T Consensus 136 Lg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~l----------------------- 192 (228)
T COG4181 136 LGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFAL----------------------- 192 (228)
T ss_pred cccccccCccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHH-----------------------
Confidence 333444455699999999999999999999999999999999999999987743321
Q ss_pred cchhhhhhhhccccceeeeeeeehheecccceEEEeeccceeec
Q psy12535 117 RGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAF 160 (209)
Q Consensus 117 ~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~ 160 (209)
....|+|.|+||||......|+|.+-|++|++++.
T Consensus 193 ---------nre~G~TlVlVTHD~~LA~Rc~R~~r~~~G~l~~~ 227 (228)
T COG4181 193 ---------NRERGTTLVLVTHDPQLAARCDRQLRLRSGRLVED 227 (228)
T ss_pred ---------hhhcCceEEEEeCCHHHHHhhhheeeeecceeccC
Confidence 13468999999999999999999999999999753
No 296
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.81 E-value=1.1e-20 Score=177.02 Aligned_cols=92 Identities=16% Similarity=0.262 Sum_probs=77.8
Q ss_pred ecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchh
Q psy12535 41 VGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGAL 120 (209)
Q Consensus 41 vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (209)
....+..|||||||||+|||||+.+|+||||||||++||+.+...+++.
T Consensus 397 ~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~------------------------------- 445 (500)
T TIGR02633 397 PFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKL------------------------------- 445 (500)
T ss_pred ccCccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHH-------------------------------
Confidence 4556779999999999999999999999999999999999988877663
Q ss_pred hhhhhhccccceeeeeeeehheecc-cceEEEeeccceeecchhhH
Q psy12535 121 SLVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQ 165 (209)
Q Consensus 121 ~~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~ 165 (209)
+.....++.|||++||+++.+.. ||+|++|++|+++..++.++
T Consensus 446 --l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~~~~~~ 489 (500)
T TIGR02633 446 --INQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLKGDFVNHA 489 (500)
T ss_pred --HHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEcccc
Confidence 22333358899999999998865 89999999999988765543
No 297
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.81 E-value=1.2e-20 Score=153.98 Aligned_cols=77 Identities=30% Similarity=0.549 Sum_probs=67.4
Q ss_pred cCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhhhhhhc
Q psy12535 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSF 127 (209)
Q Consensus 48 LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (209)
|||||+||++|||||+.+|+||||||||++||+.+...+.+. ++...
T Consensus 96 LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~---------------------------------l~~~~ 142 (173)
T cd03230 96 LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWEL---------------------------------LRELK 142 (173)
T ss_pred cCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHH---------------------------------HHHHH
Confidence 999999999999999999999999999999999988888663 33333
Q ss_pred cccceeeeeeeehheec-ccceEEEeeccce
Q psy12535 128 LKEKTVMLITHQIQYLT-HVDHVMLLEKGSV 157 (209)
Q Consensus 128 ~~~~TiIvitH~l~~l~-~~DrV~~L~~G~i 157 (209)
.++.|+|++||+.+.+. .+|++++|++|++
T Consensus 143 ~~g~tiii~th~~~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 143 KEGKTILLSSHILEEAERLCDRVAILNNGRI 173 (173)
T ss_pred HCCCEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence 34789999999999887 5899999999975
No 298
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.81 E-value=1.3e-20 Score=176.79 Aligned_cols=90 Identities=22% Similarity=0.305 Sum_probs=76.6
Q ss_pred eecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccch
Q psy12535 40 LVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGA 119 (209)
Q Consensus 40 ~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (209)
.....+.+|||||||||+|||||+.+|+||||||||++||+.+...+++.
T Consensus 133 ~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~------------------------------ 182 (501)
T PRK11288 133 DPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRV------------------------------ 182 (501)
T ss_pred CcCCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHH------------------------------
Confidence 34566789999999999999999999999999999999999988887663
Q ss_pred hhhhhhhccccceeeeeeeehheecc-cceEEEeeccceeecch
Q psy12535 120 LSLVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGT 162 (209)
Q Consensus 120 ~~~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~ 162 (209)
++....+++|||+|||+++.+.. ||+|++|++|+++..++
T Consensus 183 ---l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~ 223 (501)
T PRK11288 183 ---IRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVATFD 223 (501)
T ss_pred ---HHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecC
Confidence 22323357899999999998765 89999999999987654
No 299
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.81 E-value=1.6e-20 Score=164.33 Aligned_cols=95 Identities=34% Similarity=0.511 Sum_probs=80.9
Q ss_pred CCce-eecccceecCCccchhhhhHHHHhhh---cceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhc
Q psy12535 36 GDRT-LVGDKGVSLSGGQRARISLARAVYKR---ADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFG 111 (209)
Q Consensus 36 g~~t-~vg~~g~~LSgGqrQRlaiARal~~~---p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (209)
|+.. .+++...+|||||+||++|||+|+.+ |+++||||||++||+.....+.+.
T Consensus 157 gL~~l~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~---------------------- 214 (261)
T cd03271 157 GLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEV---------------------- 214 (261)
T ss_pred CCchhhhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHH----------------------
Confidence 4444 36888899999999999999999996 799999999999999988877663
Q ss_pred ccccccchhhhhhhhccccceeeeeeeehheecccceEEEe------eccceeecchh
Q psy12535 112 SALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLL------EKGSVEAFGTT 163 (209)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L------~~G~i~~~G~~ 163 (209)
+.....++.|||+|||+++.+..+|+|++| ++|+|+++|++
T Consensus 215 -----------L~~l~~~g~tvIiitH~~~~i~~aD~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 215 -----------LQRLVDKGNTVVVIEHNLDVIKCADWIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred -----------HHHHHhCCCEEEEEeCCHHHHHhCCEEEEecCCcCCCCCEEEEeCCC
Confidence 223333588999999999998889999999 89999999874
No 300
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.80 E-value=2.1e-20 Score=154.64 Aligned_cols=88 Identities=27% Similarity=0.463 Sum_probs=74.4
Q ss_pred ecccceecCCccchhhhhHHHHhhh--cceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccc
Q psy12535 41 VGDKGVSLSGGQRARISLARAVYKR--ADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRG 118 (209)
Q Consensus 41 vg~~g~~LSgGqrQRlaiARal~~~--p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (209)
++.++.+||||||||++||||++.+ |+++||||||++||+.+...+.+.+
T Consensus 81 ~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l---------------------------- 132 (176)
T cd03238 81 LGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVI---------------------------- 132 (176)
T ss_pred cCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHH----------------------------
Confidence 5677889999999999999999999 9999999999999999888876632
Q ss_pred hhhhhhhhccccceeeeeeeehheecccceEEEeeccceeecc
Q psy12535 119 ALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFG 161 (209)
Q Consensus 119 ~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G 161 (209)
+.....++|||++||+++.+..+|++++|++|+....|
T Consensus 133 -----~~~~~~g~tvIivSH~~~~~~~~d~i~~l~~g~~~~~~ 170 (176)
T cd03238 133 -----KGLIDLGNTVILIEHNLDVLSSADWIIDFGPGSGKSGG 170 (176)
T ss_pred -----HHHHhCCCEEEEEeCCHHHHHhCCEEEEECCCCCCCCc
Confidence 22223588999999999988779999999887664443
No 301
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.80 E-value=1.6e-20 Score=158.27 Aligned_cols=89 Identities=28% Similarity=0.478 Sum_probs=74.0
Q ss_pred CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535 36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG 115 (209)
Q Consensus 36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (209)
|+...+...+.+||+|||||++|||||+.+|++|||||||++||+.++..+.+.
T Consensus 130 ~l~~~~~~~~~~lS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~-------------------------- 183 (220)
T TIGR02982 130 GLGDHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVEL-------------------------- 183 (220)
T ss_pred CChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHH--------------------------
Confidence 344455566679999999999999999999999999999999999988777663
Q ss_pred ccchhhhhhhhcc-ccceeeeeeeehheecccceEEEeeccce
Q psy12535 116 VRGALSLVRTSFL-KEKTVMLITHQIQYLTHVDHVMLLEKGSV 157 (209)
Q Consensus 116 ~~~~~~~~~~~~~-~~~TiIvitH~l~~l~~~DrV~~L~~G~i 157 (209)
++.... .++|+|++||+++....||+|++|++|++
T Consensus 184 -------l~~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 184 -------MQKLAREQGCTILIVTHDNRILDVADRIVHMEDGKL 219 (220)
T ss_pred -------HHHHHHHcCCEEEEEeCCHHHHhhCCEEEEEECCEE
Confidence 222222 37899999999987667899999999986
No 302
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.80 E-value=2.1e-20 Score=160.20 Aligned_cols=109 Identities=25% Similarity=0.441 Sum_probs=91.8
Q ss_pred hhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchh
Q psy12535 28 EDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGR 107 (209)
Q Consensus 28 ~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (209)
...+.+| -+....+.++.+|||||||.+||||||+.+|++|+|||||.||-|...+.+++.+
T Consensus 118 ~v~~lFP-~Lker~~~~aG~LSGGEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i----------------- 179 (237)
T COG0410 118 EVYELFP-RLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAI----------------- 179 (237)
T ss_pred HHHHHCh-hHHHHhcCcccCCChHHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHH-----------------
Confidence 3445556 3666778889999999999999999999999999999999999998888887743
Q ss_pred hhhcccccccchhhhhhhhccc-cceeeeeeeehhee-cccceEEEeeccceeecchhhHHhhcc
Q psy12535 108 SFFGSALGVRGALSLVRTSFLK-EKTVMLITHQIQYL-THVDHVMLLEKGSVEAFGTTTQLLASG 170 (209)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~-~~TiIvitH~l~~l-~~~DrV~~L~~G~i~~~G~~~~l~~~~ 170 (209)
+...++ +.||++|.++.... +.+||.++|++|+|+.+|+.+++..+.
T Consensus 180 ----------------~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~~ 228 (237)
T COG0410 180 ----------------KELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLADP 228 (237)
T ss_pred ----------------HHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcCH
Confidence 333433 67999999999985 468999999999999999999998663
No 303
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.80 E-value=2.6e-20 Score=160.92 Aligned_cols=99 Identities=24% Similarity=0.351 Sum_probs=77.9
Q ss_pred CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535 36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG 115 (209)
Q Consensus 36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (209)
|+...+...+.+|||||||||+|||||+.+|++|||||||++||+.+...+.+.
T Consensus 104 ~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~-------------------------- 157 (246)
T cd03237 104 QIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKV-------------------------- 157 (246)
T ss_pred CCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH--------------------------
Confidence 445556677789999999999999999999999999999999999988777653
Q ss_pred ccchhhhhhhhcc-ccceeeeeeeehheecc-cceEEEeecccee--ecchhhHHh
Q psy12535 116 VRGALSLVRTSFL-KEKTVMLITHQIQYLTH-VDHVMLLEKGSVE--AFGTTTQLL 167 (209)
Q Consensus 116 ~~~~~~~~~~~~~-~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~--~~G~~~~l~ 167 (209)
++.... .++|||+|||+++.+.. ||+|++|+++..+ ..+++..+.
T Consensus 158 -------l~~~~~~~~~tiiivsHd~~~~~~~~d~i~~l~~~~~~~~~~~~~~~~~ 206 (246)
T cd03237 158 -------IRRFAENNEKTAFVVEHDIIMIDYLADRLIVFEGEPSVNGVANPPQSLR 206 (246)
T ss_pred -------HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCCCeeEEEeCCchHHH
Confidence 222222 37899999999999875 8999999764333 345555543
No 304
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.80 E-value=1.1e-20 Score=183.17 Aligned_cols=101 Identities=21% Similarity=0.346 Sum_probs=86.4
Q ss_pred CCCcceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhcc
Q psy12535 15 PNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGL 94 (209)
Q Consensus 15 ~~~~~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~ 94 (209)
+...++++.+++.+++.. |.|++|..+ .+..||||||||++||||++++|+++|||||||+||+.+...+.+.+
T Consensus 552 ~~i~~~l~~~~l~~~~~~-~~g~~~~~~-~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l---- 625 (659)
T TIGR00954 552 KDLEQILDNVQLTHILER-EGGWSAVQD-WMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLC---- 625 (659)
T ss_pred HHHHHHHHHcCCHHHHhh-cCCcccccc-cccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHH----
Confidence 344566777888887777 889999876 56799999999999999999999999999999999999887776532
Q ss_pred ccCCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEee
Q psy12535 95 HTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLE 153 (209)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~ 153 (209)
++ .++|+|+|||+++.+..+|+|++|+
T Consensus 626 -----------------------------~~---~~~tvI~isH~~~~~~~~d~il~l~ 652 (659)
T TIGR00954 626 -----------------------------RE---FGITLFSVSHRKSLWKYHEYLLYMD 652 (659)
T ss_pred -----------------------------HH---cCCEEEEEeCchHHHHhCCEEEEEe
Confidence 11 3789999999999998899999996
No 305
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.80 E-value=2e-20 Score=157.94 Aligned_cols=95 Identities=17% Similarity=0.214 Sum_probs=80.2
Q ss_pred ecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchh
Q psy12535 41 VGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGAL 120 (209)
Q Consensus 41 vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (209)
.......||+|||||++||||++.+|+++||||||+++|+.+...+.+.+...
T Consensus 98 ~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~--------------------------- 150 (213)
T PRK15177 98 YTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQ--------------------------- 150 (213)
T ss_pred hhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHH---------------------------
Confidence 34556789999999999999999999999999999999998887776532211
Q ss_pred hhhhhhccccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhc
Q psy12535 121 SLVRTSFLKEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLAS 169 (209)
Q Consensus 121 ~~~~~~~~~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~ 169 (209)
.+++|+|++||+++.+. .||+|++|++|++++.|+.++..+.
T Consensus 151 -------~~~~~ii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 193 (213)
T PRK15177 151 -------LQQKGLIVLTHNPRLIKEHCHAFGVLLHGKITMCEDLAQATAL 193 (213)
T ss_pred -------hhCCcEEEEECCHHHHHHhcCeeEEEECCeEEEeCCHHHHHHH
Confidence 13568999999999986 5899999999999999999888643
No 306
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.79 E-value=2.9e-20 Score=158.46 Aligned_cols=103 Identities=27% Similarity=0.434 Sum_probs=82.7
Q ss_pred ccceecCCccchhhhhHHHHhhh------cceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccc
Q psy12535 43 DKGVSLSGGQRARISLARAVYKR------ADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGV 116 (209)
Q Consensus 43 ~~g~~LSgGqrQRlaiARal~~~------p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (209)
+....|||||||||.+||.|+.- +++|+||||||+||...+...+.
T Consensus 131 R~y~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~---------------------------- 182 (259)
T COG4559 131 RDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLR---------------------------- 182 (259)
T ss_pred cchhhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHH----------------------------
Confidence 33458999999999999999843 35889999999999988777765
Q ss_pred cchhhhhhhhccccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhccCCchhccCC
Q psy12535 117 RGALSLVRTSFLKEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLASGLDFTQLLDA 179 (209)
Q Consensus 117 ~~~~~~~~~~~~~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~~~~~~~~~~~ 179 (209)
+.+.+..+|..|++|-||++... +||||++|.+|++++.|++++++... ..+.+|..
T Consensus 183 -----laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~p~~vlt~E-tl~~vyg~ 240 (259)
T COG4559 183 -----LARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQDVLTDE-TLERVYGA 240 (259)
T ss_pred -----HHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeEeecCCHHHhcCHH-HHHHHhCC
Confidence 33444567889999999999876 58999999999999999999987542 23444433
No 307
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.79 E-value=3.9e-20 Score=151.53 Aligned_cols=76 Identities=37% Similarity=0.548 Sum_probs=66.3
Q ss_pred cCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhhhhhhc
Q psy12535 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSF 127 (209)
Q Consensus 48 LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (209)
||||||||++|||||+.+|++|||||||++||+.++..+++. ++...
T Consensus 101 lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~---------------------------------l~~~~ 147 (178)
T cd03229 101 LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRAL---------------------------------LKSLQ 147 (178)
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHH---------------------------------HHHHH
Confidence 999999999999999999999999999999999988877663 22323
Q ss_pred cc-cceeeeeeeehheec-ccceEEEeeccc
Q psy12535 128 LK-EKTVMLITHQIQYLT-HVDHVMLLEKGS 156 (209)
Q Consensus 128 ~~-~~TiIvitH~l~~l~-~~DrV~~L~~G~ 156 (209)
.+ ++|+|++||+++.+. .+|++++|++|+
T Consensus 148 ~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 148 AQLGITVVLVTHDLDEAARLADRVVVLRDGK 178 (178)
T ss_pred HhcCCEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence 34 689999999999987 589999999885
No 308
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.79 E-value=7.4e-20 Score=154.76 Aligned_cols=102 Identities=25% Similarity=0.397 Sum_probs=86.9
Q ss_pred CceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccc
Q psy12535 37 DRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGV 116 (209)
Q Consensus 37 ~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (209)
........+.+||||||+|+.|||||+.+|+.+|||||++|+||.+...+
T Consensus 129 i~hlr~~~a~sLSGGERRR~EIARaLa~~P~fiLLDEPFAGVDPiaV~dI------------------------------ 178 (243)
T COG1137 129 ITHLRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDI------------------------------ 178 (243)
T ss_pred hHHHhcCcccccccchHHHHHHHHHHhcCCCEEEecCCccCCCchhHHHH------------------------------
Confidence 34445677889999999999999999999999999999999999755444
Q ss_pred cchhhhhhhhccccceeeeeeeehhe-ecccceEEEeeccceeecchhhHHhhccC
Q psy12535 117 RGALSLVRTSFLKEKTVMLITHQIQY-LTHVDHVMLLEKGSVEAFGTTTQLLASGL 171 (209)
Q Consensus 117 ~~~~~~~~~~~~~~~TiIvitH~l~~-l~~~DrV~~L~~G~i~~~G~~~~l~~~~~ 171 (209)
+.+++.+..+|..|+++-|+... +..|||.+++.+|+|..+|+++++.++..
T Consensus 179 ---q~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~n~~ 231 (243)
T COG1137 179 ---QRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNNED 231 (243)
T ss_pred ---HHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHhcChh
Confidence 33555556678999999998865 77899999999999999999999988753
No 309
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.79 E-value=6.3e-20 Score=149.39 Aligned_cols=75 Identities=36% Similarity=0.657 Sum_probs=65.7
Q ss_pred cCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhhhhhhc
Q psy12535 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSF 127 (209)
Q Consensus 48 LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (209)
||+|||||++|||||+.+|++|||||||++||+.+...+.+. +...
T Consensus 97 LS~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~---------------------------------l~~~- 142 (171)
T cd03228 97 LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEA---------------------------------LRAL- 142 (171)
T ss_pred hCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHH---------------------------------HHHh-
Confidence 999999999999999999999999999999999888777663 2222
Q ss_pred cccceeeeeeeehheecccceEEEeeccc
Q psy12535 128 LKEKTVMLITHQIQYLTHVDHVMLLEKGS 156 (209)
Q Consensus 128 ~~~~TiIvitH~l~~l~~~DrV~~L~~G~ 156 (209)
.+++|+|++||+++.+..||++++|++|+
T Consensus 143 ~~~~tii~~sh~~~~~~~~d~~~~l~~g~ 171 (171)
T cd03228 143 AKGKTVIVIAHRLSTIRDADRIIVLDDGR 171 (171)
T ss_pred cCCCEEEEEecCHHHHHhCCEEEEEcCCC
Confidence 23689999999999987799999999885
No 310
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.79 E-value=7.3e-20 Score=172.77 Aligned_cols=94 Identities=19% Similarity=0.357 Sum_probs=80.7
Q ss_pred eecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccch
Q psy12535 40 LVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGA 119 (209)
Q Consensus 40 ~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (209)
.....+.+||||||||++|||||+.+|+||||||||++||+.+...+.+.+
T Consensus 431 ~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l----------------------------- 481 (530)
T PRK15064 431 DIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMAL----------------------------- 481 (530)
T ss_pred HhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHH-----------------------------
Confidence 456677899999999999999999999999999999999999888776632
Q ss_pred hhhhhhhccccceeeeeeeehheecc-cceEEEeecccee-ecchhhHHhhc
Q psy12535 120 LSLVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGSVE-AFGTTTQLLAS 169 (209)
Q Consensus 120 ~~~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~-~~G~~~~l~~~ 169 (209)
... +.|||+|||+++.+.. ||+|++|++|+++ +.|++.++.+.
T Consensus 482 ----~~~---~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~~ 526 (530)
T PRK15064 482 ----EKY---EGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYLRS 526 (530)
T ss_pred ----HHC---CCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHHHHHH
Confidence 221 3599999999998875 8999999999998 88999887654
No 311
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.78 E-value=5.3e-20 Score=152.85 Aligned_cols=83 Identities=27% Similarity=0.392 Sum_probs=68.9
Q ss_pred CceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccc
Q psy12535 37 DRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGV 116 (209)
Q Consensus 37 ~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (209)
+...++....+|||||+||++|||||+.+|++|||||||++||+.+...+.+.
T Consensus 124 l~~~~~~~~~~lS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~--------------------------- 176 (206)
T TIGR03608 124 LNLKLKQKIYELSGGEQQRVALARAILKDPPLILADEPTGSLDPKNRDEVLDL--------------------------- 176 (206)
T ss_pred chhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcCCCCHHHHHHHHHH---------------------------
Confidence 33445666789999999999999999999999999999999999988877663
Q ss_pred cchhhhhhhhccccceeeeeeeehheecccceEEEe
Q psy12535 117 RGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLL 152 (209)
Q Consensus 117 ~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L 152 (209)
++.....++|+|++||+++.+..||+|++|
T Consensus 177 ------l~~~~~~~~tii~~sh~~~~~~~~d~i~~l 206 (206)
T TIGR03608 177 ------LLELNDEGKTIIIVTHDPEVAKQADRVIEL 206 (206)
T ss_pred ------HHHHHhcCCEEEEEeCCHHHHhhcCEEEeC
Confidence 222223478999999999977778999875
No 312
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.78 E-value=1.1e-19 Score=147.80 Aligned_cols=77 Identities=25% Similarity=0.374 Sum_probs=66.1
Q ss_pred cceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhhh
Q psy12535 44 KGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLV 123 (209)
Q Consensus 44 ~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (209)
.+..||||||||++||||++.+|+++||||||++||+.+...+.+.+
T Consensus 88 ~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l--------------------------------- 134 (166)
T cd03223 88 WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLL--------------------------------- 134 (166)
T ss_pred CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHH---------------------------------
Confidence 45689999999999999999999999999999999999888776632
Q ss_pred hhhccccceeeeeeeehheecccceEEEeeccc
Q psy12535 124 RTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGS 156 (209)
Q Consensus 124 ~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~ 156 (209)
.+. ++|+|++||+++....+|+|++|++|-
T Consensus 135 ~~~---~~tiiivsh~~~~~~~~d~i~~l~~~~ 164 (166)
T cd03223 135 KEL---GITVISVGHRPSLWKFHDRVLDLDGEG 164 (166)
T ss_pred HHh---CCEEEEEeCChhHHhhCCEEEEEcCCC
Confidence 221 579999999998777789999998753
No 313
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.78 E-value=1.2e-19 Score=151.74 Aligned_cols=88 Identities=24% Similarity=0.318 Sum_probs=69.8
Q ss_pred ecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchh
Q psy12535 41 VGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGAL 120 (209)
Q Consensus 41 vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (209)
.......||+||+||++|||||+.+|++|||||||++||+.+++.+.+.+
T Consensus 112 ~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l------------------------------ 161 (202)
T cd03233 112 GNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCI------------------------------ 161 (202)
T ss_pred cccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHH------------------------------
Confidence 35567799999999999999999999999999999999999888876632
Q ss_pred hhhhhhccc-cceeeeee-eehheec-ccceEEEeeccceeecc
Q psy12535 121 SLVRTSFLK-EKTVMLIT-HQIQYLT-HVDHVMLLEKGSVEAFG 161 (209)
Q Consensus 121 ~~~~~~~~~-~~TiIvit-H~l~~l~-~~DrV~~L~~G~i~~~G 161 (209)
+....+ +.|+|+++ |+.+.+. .+|++++|++|++++.|
T Consensus 162 ---~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 162 ---RTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred ---HHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 222222 55666655 5556654 58999999999998654
No 314
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.78 E-value=1.1e-19 Score=171.48 Aligned_cols=90 Identities=22% Similarity=0.408 Sum_probs=77.5
Q ss_pred ccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhh
Q psy12535 43 DKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSL 122 (209)
Q Consensus 43 ~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (209)
....+|||||||||+|||||+.+|+||||||||++||+.+...+.+.
T Consensus 151 ~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~--------------------------------- 197 (530)
T PRK15064 151 GLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDV--------------------------------- 197 (530)
T ss_pred CchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHH---------------------------------
Confidence 45679999999999999999999999999999999999988777552
Q ss_pred hhhhccccceeeeeeeehheecc-cceEEEeeccce-eecchhhHHhh
Q psy12535 123 VRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGSV-EAFGTTTQLLA 168 (209)
Q Consensus 123 ~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i-~~~G~~~~l~~ 168 (209)
+. ..++|||+|||+++.+.. ||+|++|++|++ ++.|+++++.+
T Consensus 198 l~---~~~~tiiivsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~ 242 (530)
T PRK15064 198 LN---ERNSTMIIISHDRHFLNSVCTHMADLDYGELRVYPGNYDEYMT 242 (530)
T ss_pred HH---hCCCeEEEEeCCHHHHHhhcceEEEEeCCEEEEecCCHHHHHH
Confidence 21 137899999999998865 899999999999 47898887753
No 315
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.78 E-value=1e-19 Score=169.97 Aligned_cols=88 Identities=18% Similarity=0.270 Sum_probs=74.0
Q ss_pred eecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccch
Q psy12535 40 LVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGA 119 (209)
Q Consensus 40 ~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (209)
.....+.+|||||||||+|||||+.+|+||||||||++||+.+...+.+.
T Consensus 394 ~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~------------------------------ 443 (490)
T PRK10938 394 TADAPFHSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRF------------------------------ 443 (490)
T ss_pred hccCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHH------------------------------
Confidence 45666789999999999999999999999999999999999988888763
Q ss_pred hhhhhhhcccc-ceeeeeeeehheecc--cceEEEeeccceeec
Q psy12535 120 LSLVRTSFLKE-KTVMLITHQIQYLTH--VDHVMLLEKGSVEAF 160 (209)
Q Consensus 120 ~~~~~~~~~~~-~TiIvitH~l~~l~~--~DrV~~L~~G~i~~~ 160 (209)
+.....++ .|||+|||+++.+.. +|+|++|++|+|++.
T Consensus 444 ---L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~~~ 484 (490)
T PRK10938 444 ---VDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDGDIYRY 484 (490)
T ss_pred ---HHHHHhcCCcEEEEEecchhhhhhhhheeEEEecCCceEEe
Confidence 22323344 469999999999863 699999999998764
No 316
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.78 E-value=9.3e-20 Score=158.05 Aligned_cols=97 Identities=23% Similarity=0.354 Sum_probs=86.0
Q ss_pred cccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhh
Q psy12535 42 GDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALS 121 (209)
Q Consensus 42 g~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (209)
..+..+||.|++|+|.+..+++++|+++|||||+|||||.+.+.+.+.++
T Consensus 125 ~~kIk~LSKGnqQKIQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~------------------------------ 174 (300)
T COG4152 125 TKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIF------------------------------ 174 (300)
T ss_pred cchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHH------------------------------
Confidence 45778999999999999999999999999999999999998877766432
Q ss_pred hhhhhccccceeeeeeeehheecc-cceEEEeeccceeecchhhHHhhccC
Q psy12535 122 LVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQLLASGL 171 (209)
Q Consensus 122 ~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l~~~~~ 171 (209)
....+|+|||++||+|+.++. ||++++|++|+.+-.|+.+++.++++
T Consensus 175 ---~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G~v~~ir~~~G 222 (300)
T COG4152 175 ---ELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRRSFG 222 (300)
T ss_pred ---HHHhcCCEEEEecchHHHHHHHhhhhheecCCceEEeccHHHHHHhcC
Confidence 335579999999999999975 99999999999999999999987544
No 317
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.77 E-value=1.4e-19 Score=191.77 Aligned_cols=103 Identities=20% Similarity=0.343 Sum_probs=88.2
Q ss_pred CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535 36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG 115 (209)
Q Consensus 36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (209)
|+..........|||||||||+||+||+.+|+||||||||+|||+.+++.+++.
T Consensus 2059 gL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~l-------------------------- 2112 (2272)
T TIGR01257 2059 GLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNT-------------------------- 2112 (2272)
T ss_pred CCHHHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHH--------------------------
Confidence 344445666789999999999999999999999999999999999998888763
Q ss_pred ccchhhhhhhhccccceeeeeeeehheecc-cceEEEeeccceeecchhhHHhhccC
Q psy12535 116 VRGALSLVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQLLASGL 171 (209)
Q Consensus 116 ~~~~~~~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l~~~~~ 171 (209)
+.+...+|+|||++||+++.++. ||||++|++|++++.|+++++++..+
T Consensus 2113 -------L~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~Gs~q~Lk~~~g 2162 (2272)
T TIGR01257 2113 -------IVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLKSKFG 2162 (2272)
T ss_pred -------HHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHHhC
Confidence 22323458999999999999875 89999999999999999999987654
No 318
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.77 E-value=1.8e-19 Score=190.97 Aligned_cols=102 Identities=24% Similarity=0.318 Sum_probs=88.0
Q ss_pred CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535 36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG 115 (209)
Q Consensus 36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (209)
|+.......+.+|||||||||+|||||+.+|+||||||||+|||+.+++.+++.
T Consensus 1050 gL~~~~~~~~~~LSGGqKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~l-------------------------- 1103 (2272)
T TIGR01257 1050 GLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDL-------------------------- 1103 (2272)
T ss_pred CCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHH--------------------------
Confidence 444455677789999999999999999999999999999999999988888763
Q ss_pred ccchhhhhhhhccccceeeeeeeehheecc-cceEEEeeccceeecchhhHHhhccC
Q psy12535 116 VRGALSLVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQLLASGL 171 (209)
Q Consensus 116 ~~~~~~~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l~~~~~ 171 (209)
+++. .+|+|||++||+++.+.. +|||++|++|++++.|++.++++..+
T Consensus 1104 -------L~~l-~~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~~~Lk~~~g 1152 (2272)
T TIGR01257 1104 -------LLKY-RSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLKNCFG 1152 (2272)
T ss_pred -------HHHH-hCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHHHhcC
Confidence 3333 358899999999999864 89999999999999999999987654
No 319
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.77 E-value=1.9e-19 Score=156.44 Aligned_cols=92 Identities=26% Similarity=0.386 Sum_probs=75.5
Q ss_pred CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535 36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG 115 (209)
Q Consensus 36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (209)
|+...+...+.+||||||||++|||||+.+|+++||||||++||+.+...+.+.
T Consensus 128 gl~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPts~LD~~~~~~l~~~-------------------------- 181 (255)
T cd03236 128 ELRHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARL-------------------------- 181 (255)
T ss_pred CCchhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHH--------------------------
Confidence 445556778889999999999999999999999999999999999888777653
Q ss_pred ccchhhhhhhhccccceeeeeeeehheecc-cceEEEeeccceeecc
Q psy12535 116 VRGALSLVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFG 161 (209)
Q Consensus 116 ~~~~~~~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G 161 (209)
++....+++|||++||+++.+.. ||+|++|+ |++.+.|
T Consensus 182 -------l~~l~~~~~tIIiiSHd~~~~~~~ad~i~~l~-~~~~~~~ 220 (255)
T cd03236 182 -------IRELAEDDNYVLVVEHDLAVLDYLSDYIHCLY-GEPGAYG 220 (255)
T ss_pred -------HHHHHhcCCEEEEEECCHHHHHHhCCEEEEEC-CCCCcce
Confidence 22223347899999999999874 89999994 6676543
No 320
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.76 E-value=2.1e-19 Score=149.98 Aligned_cols=83 Identities=27% Similarity=0.259 Sum_probs=68.4
Q ss_pred CceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccc
Q psy12535 37 DRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGV 116 (209)
Q Consensus 37 ~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (209)
+.......+.+||||||||++||||++.+|+++||||||++||+.+...+.+.
T Consensus 119 l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~--------------------------- 171 (204)
T PRK13538 119 LAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEAL--------------------------- 171 (204)
T ss_pred CHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHH---------------------------
Confidence 33334556779999999999999999999999999999999999988877653
Q ss_pred cchhhhhhhhccccceeeeeeeehheeccc-ceEEEe
Q psy12535 117 RGALSLVRTSFLKEKTVMLITHQIQYLTHV-DHVMLL 152 (209)
Q Consensus 117 ~~~~~~~~~~~~~~~TiIvitH~l~~l~~~-DrV~~L 152 (209)
+.+....++|||++||+++.+..| +|++++
T Consensus 172 ------l~~~~~~~~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 172 ------LAQHAEQGGMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred ------HHHHHHCCCEEEEEecChhhhccCCceEEec
Confidence 223233478999999999999776 788887
No 321
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.76 E-value=3.4e-19 Score=169.46 Aligned_cols=92 Identities=28% Similarity=0.412 Sum_probs=77.7
Q ss_pred ecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchh
Q psy12535 41 VGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGAL 120 (209)
Q Consensus 41 vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (209)
......+|||||||||+|||||+.+|++|||||||++||+.+...+.+.
T Consensus 157 ~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~------------------------------- 205 (556)
T PRK11819 157 WDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQF------------------------------- 205 (556)
T ss_pred ccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHH-------------------------------
Confidence 3556789999999999999999999999999999999999888777652
Q ss_pred hhhhhhccccceeeeeeeehheecc-cceEEEeecccee-ecchhhHHhh
Q psy12535 121 SLVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGSVE-AFGTTTQLLA 168 (209)
Q Consensus 121 ~~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~-~~G~~~~l~~ 168 (209)
++.. +.|||+|||+++.+.. +|+|++|++|+++ +.|+++++.+
T Consensus 206 --L~~~---~~tviiisHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~ 250 (556)
T PRK11819 206 --LHDY---PGTVVAVTHDRYFLDNVAGWILELDRGRGIPWEGNYSSWLE 250 (556)
T ss_pred --HHhC---CCeEEEEeCCHHHHHhhcCeEEEEeCCEEEEecCCHHHHHH
Confidence 2221 2499999999999875 7999999999986 7788887643
No 322
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.76 E-value=2.1e-19 Score=173.97 Aligned_cols=99 Identities=27% Similarity=0.420 Sum_probs=86.0
Q ss_pred CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535 36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG 115 (209)
Q Consensus 36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (209)
|++..+...+..||+||+||++|||||+.+|+++||||||++||+.+.+.+.+.
T Consensus 133 gl~~~~~~~~~~LS~Gq~qrv~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~l-------------------------- 186 (648)
T PRK10535 133 GLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAI-------------------------- 186 (648)
T ss_pred CChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHH--------------------------
Confidence 555666777889999999999999999999999999999999999988887663
Q ss_pred ccchhhhhhhhccccceeeeeeeehheecccceEEEeeccceeecchhhHHh
Q psy12535 116 VRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLL 167 (209)
Q Consensus 116 ~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~ 167 (209)
+.+...+++|+|++||+++.+..||++++|++|+++++|+.++..
T Consensus 187 -------l~~l~~~g~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 231 (648)
T PRK10535 187 -------LHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVRNPPAQEKV 231 (648)
T ss_pred -------HHHHHhcCCEEEEECCCHHHHHhCCEEEEEECCEEEeecCccccc
Confidence 333333588999999999988789999999999999999998775
No 323
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.76 E-value=3.7e-19 Score=141.87 Aligned_cols=73 Identities=30% Similarity=0.559 Sum_probs=64.0
Q ss_pred cCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhhhhhhc
Q psy12535 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSF 127 (209)
Q Consensus 48 LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (209)
||+||+||++||||++.+|+++||||||++||+.+...+.+. ++..
T Consensus 71 lS~G~~~rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~---------------------------------l~~~- 116 (144)
T cd03221 71 LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEA---------------------------------LKEY- 116 (144)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHH---------------------------------HHHc-
Confidence 999999999999999999999999999999999988777663 2221
Q ss_pred cccceeeeeeeehheecc-cceEEEeeccc
Q psy12535 128 LKEKTVMLITHQIQYLTH-VDHVMLLEKGS 156 (209)
Q Consensus 128 ~~~~TiIvitH~l~~l~~-~DrV~~L~~G~ 156 (209)
++|+|++||+++.+.. +|++++|++|+
T Consensus 117 --~~til~~th~~~~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 117 --PGTVILVSHDRYFLDQVATKIIELEDGK 144 (144)
T ss_pred --CCEEEEEECCHHHHHHhCCEEEEEeCCC
Confidence 4699999999998865 79999999986
No 324
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.76 E-value=4.1e-19 Score=168.69 Aligned_cols=91 Identities=27% Similarity=0.433 Sum_probs=77.6
Q ss_pred cccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhh
Q psy12535 42 GDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALS 121 (209)
Q Consensus 42 g~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (209)
...+.+|||||||||+|||||+.+|++|||||||++||+.+...+.+.
T Consensus 156 ~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~-------------------------------- 203 (552)
T TIGR03719 156 DADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQH-------------------------------- 203 (552)
T ss_pred cCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHH--------------------------------
Confidence 556789999999999999999999999999999999999988877653
Q ss_pred hhhhhccccceeeeeeeehheecc-cceEEEeecccee-ecchhhHHhh
Q psy12535 122 LVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGSVE-AFGTTTQLLA 168 (209)
Q Consensus 122 ~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~-~~G~~~~l~~ 168 (209)
+... +.|||+|||+++.+.. ||+|++|++|+++ ..|+++++.+
T Consensus 204 -L~~~---~~tvIiisHd~~~~~~~~d~v~~l~~g~i~~~~g~~~~~~~ 248 (552)
T TIGR03719 204 -LQEY---PGTVVAVTHDRYFLDNVAGWILELDRGRGIPWEGNYSSWLE 248 (552)
T ss_pred -HHhC---CCeEEEEeCCHHHHHhhcCeEEEEECCEEEEecCCHHHHHH
Confidence 2221 3599999999999875 7999999999975 7788887654
No 325
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.76 E-value=3.1e-19 Score=147.79 Aligned_cols=84 Identities=24% Similarity=0.353 Sum_probs=69.2
Q ss_pred cCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhhhhhhc
Q psy12535 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSF 127 (209)
Q Consensus 48 LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (209)
||||||||++||||++.+|+++||||||++||+.+...+.+.+ ....
T Consensus 72 LSgGq~qrv~laral~~~p~lllLDEPts~LD~~~~~~l~~~l---------------------------------~~~~ 118 (177)
T cd03222 72 LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAI---------------------------------RRLS 118 (177)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHH---------------------------------HHHH
Confidence 9999999999999999999999999999999999888776632 2222
Q ss_pred cc-cceeeeeeeehheecc-cceEEEeeccceeec--chhh
Q psy12535 128 LK-EKTVMLITHQIQYLTH-VDHVMLLEKGSVEAF--GTTT 164 (209)
Q Consensus 128 ~~-~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~--G~~~ 164 (209)
.+ +.|+|++||+++.+.. +|++++|+++-.+.+ |.+.
T Consensus 119 ~~~~~tiiivsH~~~~~~~~~d~i~~l~~~~~~~~~~~~~~ 159 (177)
T cd03222 119 EEGKKTALVVEHDLAVLDYLSDRIHVFEGEPGVYGIASQPK 159 (177)
T ss_pred HcCCCEEEEEECCHHHHHHhCCEEEEEcCCCccceeccCCc
Confidence 33 3899999999999874 899999988755533 5444
No 326
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.76 E-value=4.1e-19 Score=149.42 Aligned_cols=84 Identities=21% Similarity=0.242 Sum_probs=69.6
Q ss_pred ceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccccc
Q psy12535 38 RTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVR 117 (209)
Q Consensus 38 ~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (209)
..........||||||||++||||++.+|++|||||||++||+.+...+.+.
T Consensus 128 ~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~---------------------------- 179 (214)
T PRK13543 128 AGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRM---------------------------- 179 (214)
T ss_pred hhhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH----------------------------
Confidence 3344566789999999999999999999999999999999999988777652
Q ss_pred chhhhhhhhccccceeeeeeeehheecc-cceEEEeec
Q psy12535 118 GALSLVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEK 154 (209)
Q Consensus 118 ~~~~~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~ 154 (209)
+.....+++|+|++||+++.+.. +|++++|+.
T Consensus 180 -----l~~~~~~~~tiii~sH~~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 180 -----ISAHLRGGGAALVTTHGAYAAPPVRTRMLTLEA 212 (214)
T ss_pred -----HHHHHhCCCEEEEEecChhhhhhhcceEEEEee
Confidence 22223357899999999999865 799999863
No 327
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.75 E-value=4.6e-19 Score=171.45 Aligned_cols=91 Identities=29% Similarity=0.474 Sum_probs=78.6
Q ss_pred ecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchh
Q psy12535 41 VGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGAL 120 (209)
Q Consensus 41 vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (209)
+...+..|||||||||+|||+|+.+|+||||||||++||+.+...+.+.+
T Consensus 424 ~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L------------------------------ 473 (638)
T PRK10636 424 VTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEAL------------------------------ 473 (638)
T ss_pred hcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHH------------------------------
Confidence 45567899999999999999999999999999999999999888776632
Q ss_pred hhhhhhccccceeeeeeeehheecc-cceEEEeecccee-ecchhhHHh
Q psy12535 121 SLVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGSVE-AFGTTTQLL 167 (209)
Q Consensus 121 ~~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~-~~G~~~~l~ 167 (209)
... +.|||+|||+++++.. ||+|++|++|+++ ..|+++++.
T Consensus 474 ---~~~---~gtvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 516 (638)
T PRK10636 474 ---IDF---EGALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDYQ 516 (638)
T ss_pred ---HHc---CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHHH
Confidence 222 3499999999999865 8999999999997 789998874
No 328
>PRK13409 putative ATPase RIL; Provisional
Probab=99.75 E-value=3.9e-19 Score=170.76 Aligned_cols=93 Identities=27% Similarity=0.457 Sum_probs=76.7
Q ss_pred CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535 36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG 115 (209)
Q Consensus 36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (209)
|+.......+.+|||||||||+|||||+.+|+||||||||++||+.+...+.+.
T Consensus 442 ~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~-------------------------- 495 (590)
T PRK13409 442 QLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKA-------------------------- 495 (590)
T ss_pred CCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHH--------------------------
Confidence 444455677789999999999999999999999999999999999988877663
Q ss_pred ccchhhhhhhhcc-ccceeeeeeeehheecc-cceEEEeeccceeecch
Q psy12535 116 VRGALSLVRTSFL-KEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGT 162 (209)
Q Consensus 116 ~~~~~~~~~~~~~-~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~ 162 (209)
++.... .++|||+|||+++++.. +|+|++|+ |++...|.
T Consensus 496 -------l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~-~~~~~~g~ 536 (590)
T PRK13409 496 -------IRRIAEEREATALVVDHDIYMIDYISDRLMVFE-GEPGKHGH 536 (590)
T ss_pred -------HHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEc-Ccceeeee
Confidence 333323 37899999999998865 89999996 58877665
No 329
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.75 E-value=6.7e-19 Score=176.04 Aligned_cols=101 Identities=27% Similarity=0.383 Sum_probs=86.5
Q ss_pred CCcee-ecccceecCCccchhhhhHHHHhhhc--ceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcc
Q psy12535 36 GDRTL-VGDKGVSLSGGQRARISLARAVYKRA--DVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGS 112 (209)
Q Consensus 36 g~~t~-vg~~g~~LSgGqrQRlaiARal~~~p--~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (209)
|+..+ +++...+|||||+|||.||++|+.+| ++|||||||+|||+.....+++.
T Consensus 475 gL~~l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~----------------------- 531 (924)
T TIGR00630 475 GLDYLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINT----------------------- 531 (924)
T ss_pred cccccccCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHH-----------------------
Confidence 34433 57788999999999999999999986 89999999999999988887663
Q ss_pred cccccchhhhhhhhccccceeeeeeeehheecccceEEEe------eccceeecchhhHHhhc
Q psy12535 113 ALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLL------EKGSVEAFGTTTQLLAS 169 (209)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L------~~G~i~~~G~~~~l~~~ 169 (209)
++++..+|+|||+|+|+++.+..||+|++| ++|+|++.|+++++...
T Consensus 532 ----------L~~L~~~G~TVIvVeHd~~~i~~aD~vi~LgpgaG~~~G~Iv~~g~~~el~~~ 584 (924)
T TIGR00630 532 ----------LKRLRDLGNTVIVVEHDEETIRAADYVIDIGPGAGIHGGEVVASGTPEEILAN 584 (924)
T ss_pred ----------HHHHHhCCCEEEEEECCHHHHhhCCEEEEecccccCCCCEEeeccCHHHHhcC
Confidence 333344689999999999998889999999 89999999999998644
No 330
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.75 E-value=9.1e-19 Score=169.08 Aligned_cols=91 Identities=26% Similarity=0.396 Sum_probs=76.4
Q ss_pred cccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhh
Q psy12535 42 GDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALS 121 (209)
Q Consensus 42 g~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (209)
.....+|||||||||+|||||+.+|+||||||||++||+.+...+.+.
T Consensus 151 ~~~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~-------------------------------- 198 (635)
T PRK11147 151 DAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGF-------------------------------- 198 (635)
T ss_pred CCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHH--------------------------------
Confidence 456789999999999999999999999999999999999887766552
Q ss_pred hhhhhccccceeeeeeeehheecc-cceEEEeecccee-ecchhhHHhh
Q psy12535 122 LVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGSVE-AFGTTTQLLA 168 (209)
Q Consensus 122 ~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~-~~G~~~~l~~ 168 (209)
+... +.|||+|||+..++.. ||+|++|++|+++ ..|+++++..
T Consensus 199 -L~~~---~~tvlivsHd~~~l~~~~d~i~~L~~G~i~~~~g~~~~~~~ 243 (635)
T PRK11147 199 -LKTF---QGSIIFISHDRSFIRNMATRIVDLDRGKLVSYPGNYDQYLL 243 (635)
T ss_pred -HHhC---CCEEEEEeCCHHHHHHhcCeEEEEECCEEEEecCCHHHHHH
Confidence 2222 3599999999999875 7999999999997 4688876643
No 331
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.75 E-value=7.5e-19 Score=176.01 Aligned_cols=101 Identities=24% Similarity=0.366 Sum_probs=86.9
Q ss_pred CCcee-ecccceecCCccchhhhhHHHHhhhc--ceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcc
Q psy12535 36 GDRTL-VGDKGVSLSGGQRARISLARAVYKRA--DVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGS 112 (209)
Q Consensus 36 g~~t~-vg~~g~~LSgGqrQRlaiARal~~~p--~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (209)
|+..+ +++...+|||||+|||+||+||+.+| ++|||||||++||+.....+++.
T Consensus 477 GL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~----------------------- 533 (943)
T PRK00349 477 GLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIET----------------------- 533 (943)
T ss_pred ccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHH-----------------------
Confidence 44444 57788899999999999999999997 99999999999999988887663
Q ss_pred cccccchhhhhhhhccccceeeeeeeehheecccceEEEe------eccceeecchhhHHhhc
Q psy12535 113 ALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLL------EKGSVEAFGTTTQLLAS 169 (209)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L------~~G~i~~~G~~~~l~~~ 169 (209)
++++..+|+|||+|+|+++.+..+|+|++| ++|+|+..|+++++...
T Consensus 534 ----------L~~L~~~G~TVIvVeH~~~~i~~aD~vi~LgpgaG~~~G~iv~~g~~~e~~~~ 586 (943)
T PRK00349 534 ----------LKHLRDLGNTLIVVEHDEDTIRAADYIVDIGPGAGVHGGEVVASGTPEEIMKN 586 (943)
T ss_pred ----------HHHHHhCCCEEEEEeCCHHHHHhCCEEEEeccccCCCCCEEeeccCHHHHhcC
Confidence 333344689999999999998889999999 99999999999998654
No 332
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.74 E-value=5.4e-19 Score=149.48 Aligned_cols=98 Identities=28% Similarity=0.423 Sum_probs=84.0
Q ss_pred eeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccc
Q psy12535 39 TLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRG 118 (209)
Q Consensus 39 t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (209)
.+-++...+||||||||.-||..++.+.+.++||||.++||.+....+++.+
T Consensus 127 ~l~dryLd~LSGGQrQRAfIAMVlaQdTdyvlLDEPLNNLDmkHsv~iMk~L---------------------------- 178 (252)
T COG4604 127 DLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKIL---------------------------- 178 (252)
T ss_pred chHHHhHHhcccchhhhhhhheeeeccCcEEEecCcccccchHHHHHHHHHH----------------------------
Confidence 3344555699999999999999999999999999999999999888887643
Q ss_pred hhhhhhhhcc-ccceeeeeeeehheecc-cceEEEeeccceeecchhhHHhhc
Q psy12535 119 ALSLVRTSFL-KEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQLLAS 169 (209)
Q Consensus 119 ~~~~~~~~~~-~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l~~~ 169 (209)
++... -+||||+|-||.+++.. +|+|+-|++|+++.+|++++++..
T Consensus 179 -----rrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv~~G~~~eii~~ 226 (252)
T COG4604 179 -----RRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQP 226 (252)
T ss_pred -----HHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEEEecCCHHHhcCH
Confidence 22222 38999999999999875 799999999999999999999865
No 333
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.74 E-value=1.2e-18 Score=168.64 Aligned_cols=92 Identities=28% Similarity=0.420 Sum_probs=76.6
Q ss_pred eecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccch
Q psy12535 40 LVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGA 119 (209)
Q Consensus 40 ~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (209)
.......+|||||||||+|||||+.+|+||||||||++||+.+...+.+.
T Consensus 142 ~~~~~~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~------------------------------ 191 (638)
T PRK10636 142 QLERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKW------------------------------ 191 (638)
T ss_pred hhcCchhhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHH------------------------------
Confidence 34566789999999999999999999999999999999999877665442
Q ss_pred hhhhhhhccccceeeeeeeehheecc-cceEEEeecccee-ecchhhHHh
Q psy12535 120 LSLVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGSVE-AFGTTTQLL 167 (209)
Q Consensus 120 ~~~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~-~~G~~~~l~ 167 (209)
+.. -+.|||+|||++.++.. ||+|++|++|++. ..|+++...
T Consensus 192 ---L~~---~~~tviivsHd~~~l~~~~d~i~~L~~G~i~~~~g~~~~~~ 235 (638)
T PRK10636 192 ---LKS---YQGTLILISHDRDFLDPIVDKIIHIEQQSLFEYTGNYSSFE 235 (638)
T ss_pred ---HHh---CCCeEEEEeCCHHHHHHhcCEEEEEeCCEEEEecCCHHHHH
Confidence 222 14699999999999875 7999999999996 568777664
No 334
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.74 E-value=1.1e-18 Score=181.01 Aligned_cols=96 Identities=23% Similarity=0.374 Sum_probs=82.4
Q ss_pred CCceeecccceecCCccchhhhhHHHHhhhcc-eeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccc
Q psy12535 36 GDRTLVGDKGVSLSGGQRARISLARAVYKRAD-VYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSAL 114 (209)
Q Consensus 36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~-illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (209)
-.++.+|+.+.+|||||||||+|||+|+.+|+ ||+|||||||||+.+...+.+.
T Consensus 890 ~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~------------------------- 944 (1394)
T TIGR00956 890 YADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKL------------------------- 944 (1394)
T ss_pred hCCCeeCCCCCCCCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHH-------------------------
Confidence 45788888788999999999999999999997 9999999999999988888663
Q ss_pred cccchhhhhhhhccccceeeeeeeehhee--cccceEEEeecc-ceeecchhh
Q psy12535 115 GVRGALSLVRTSFLKEKTVMLITHQIQYL--THVDHVMLLEKG-SVEAFGTTT 164 (209)
Q Consensus 115 ~~~~~~~~~~~~~~~~~TiIvitH~l~~l--~~~DrV~~L~~G-~i~~~G~~~ 164 (209)
+++...+|+|||+++|+++.. ..+|+|++|++| ++++.|++.
T Consensus 945 --------L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~ 989 (1394)
T TIGR00956 945 --------MRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLG 989 (1394)
T ss_pred --------HHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCcc
Confidence 333334689999999999863 568999999987 999999863
No 335
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.74 E-value=6.8e-19 Score=145.02 Aligned_cols=74 Identities=31% Similarity=0.466 Sum_probs=60.8
Q ss_pred CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535 36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG 115 (209)
Q Consensus 36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (209)
|+.......+.+||||||||++|||||+.+|+++||||||++||+.+...+.+.
T Consensus 116 ~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~-------------------------- 169 (190)
T TIGR01166 116 GASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAI-------------------------- 169 (190)
T ss_pred CchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH--------------------------
Confidence 344445667789999999999999999999999999999999999988877663
Q ss_pred ccchhhhhhhhccccceeeeeeeehhe
Q psy12535 116 VRGALSLVRTSFLKEKTVMLITHQIQY 142 (209)
Q Consensus 116 ~~~~~~~~~~~~~~~~TiIvitH~l~~ 142 (209)
+.....+++|||++||+++.
T Consensus 170 -------l~~~~~~~~tili~sH~~~~ 189 (190)
T TIGR01166 170 -------LRRLRAEGMTVVISTHDVDL 189 (190)
T ss_pred -------HHHHHHcCCEEEEEeecccc
Confidence 22323357899999999875
No 336
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.74 E-value=2.3e-19 Score=151.63 Aligned_cols=91 Identities=30% Similarity=0.351 Sum_probs=74.8
Q ss_pred cccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhh
Q psy12535 42 GDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALS 121 (209)
Q Consensus 42 g~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (209)
...+-+||||||||+.|||||+.+|++|+||||+++||.-+.+++-+.++.
T Consensus 127 ~~~i~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLld----------------------------- 177 (259)
T COG4525 127 HKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLD----------------------------- 177 (259)
T ss_pred ccceEeecchHHHHHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHH-----------------------------
Confidence 345569999999999999999999999999999999999988888664332
Q ss_pred hhhhhccccceeeeeeeehheec-ccceEEEee--ccceeecchhh
Q psy12535 122 LVRTSFLKEKTVMLITHQIQYLT-HVDHVMLLE--KGSVEAFGTTT 164 (209)
Q Consensus 122 ~~~~~~~~~~TiIvitH~l~~l~-~~DrV~~L~--~G~i~~~G~~~ 164 (209)
-+...|+.+++|||+++..- .++++++|. .|+|++.-+++
T Consensus 178 ---lw~~tgk~~lliTH~ieEAlflatrLvvlsp~pgRvv~~~~~d 220 (259)
T COG4525 178 ---LWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRVVERLPLD 220 (259)
T ss_pred ---HHHHhCCeEEEEeccHHHHHhhhheeEEecCCCceeeEecCCC
Confidence 22346899999999999865 589999997 57888765443
No 337
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.74 E-value=9.1e-19 Score=147.53 Aligned_cols=78 Identities=23% Similarity=0.328 Sum_probs=66.3
Q ss_pred cccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhh
Q psy12535 42 GDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALS 121 (209)
Q Consensus 42 g~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (209)
...+.+||||||||++|||||+.+|++|||||||++||+.+...+.+.
T Consensus 144 ~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~-------------------------------- 191 (224)
T TIGR02324 144 HLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVEL-------------------------------- 191 (224)
T ss_pred hCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH--------------------------------
Confidence 456789999999999999999999999999999999999988887663
Q ss_pred hhhhhccccceeeeeeeehheec-ccceEEEe
Q psy12535 122 LVRTSFLKEKTVMLITHQIQYLT-HVDHVMLL 152 (209)
Q Consensus 122 ~~~~~~~~~~TiIvitH~l~~l~-~~DrV~~L 152 (209)
++....+++|||++||+++.+. .||+|+.+
T Consensus 192 -l~~~~~~g~tii~vsH~~~~~~~~~d~i~~~ 222 (224)
T TIGR02324 192 -IAEAKARGAALIGIFHDEEVRELVADRVMDV 222 (224)
T ss_pred -HHHHHhcCCEEEEEeCCHHHHHHhcceeEec
Confidence 2232334789999999999886 58999876
No 338
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.73 E-value=1.4e-18 Score=145.55 Aligned_cols=80 Identities=26% Similarity=0.278 Sum_probs=67.2
Q ss_pred ecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchh
Q psy12535 41 VGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGAL 120 (209)
Q Consensus 41 vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (209)
......+||||||||++||||++.+|++|||||||++||+.+...+.+.
T Consensus 121 ~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~------------------------------- 169 (207)
T PRK13539 121 AHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAEL------------------------------- 169 (207)
T ss_pred HcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH-------------------------------
Confidence 3455678999999999999999999999999999999999988887663
Q ss_pred hhhhhhccccceeeeeeeehheecccceEEEeec
Q psy12535 121 SLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEK 154 (209)
Q Consensus 121 ~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~ 154 (209)
+.....+++|||++||+++.+.. |+++.+..
T Consensus 170 --l~~~~~~~~tiii~sH~~~~~~~-~~~~~~~~ 200 (207)
T PRK13539 170 --IRAHLAQGGIVIAATHIPLGLPG-ARELDLGP 200 (207)
T ss_pred --HHHHHHCCCEEEEEeCCchhhcc-CcEEeecC
Confidence 22223357899999999999887 99988854
No 339
>PLN03073 ABC transporter F family; Provisional
Probab=99.73 E-value=2.1e-18 Score=168.98 Aligned_cols=91 Identities=24% Similarity=0.443 Sum_probs=76.4
Q ss_pred ecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchh
Q psy12535 41 VGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGAL 120 (209)
Q Consensus 41 vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (209)
....+.+|||||||||+||||++.+|++|||||||++||+.+...+.+.+
T Consensus 621 ~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L------------------------------ 670 (718)
T PLN03073 621 ALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGL------------------------------ 670 (718)
T ss_pred hcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHH------------------------------
Confidence 34567799999999999999999999999999999999998877765522
Q ss_pred hhhhhhccccceeeeeeeehheecc-cceEEEeecccee-ecchhhHHh
Q psy12535 121 SLVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGSVE-AFGTTTQLL 167 (209)
Q Consensus 121 ~~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~-~~G~~~~l~ 167 (209)
... +.|||+|||++..+.. ||+|++|++|+++ ..|+++++.
T Consensus 671 ---~~~---~gtvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~~~~ 713 (718)
T PLN03073 671 ---VLF---QGGVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDYK 713 (718)
T ss_pred ---HHc---CCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHHH
Confidence 111 2499999999999875 8999999999998 678877653
No 340
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.72 E-value=1.8e-18 Score=144.16 Aligned_cols=79 Identities=27% Similarity=0.307 Sum_probs=65.2
Q ss_pred ecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchh
Q psy12535 41 VGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGAL 120 (209)
Q Consensus 41 vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (209)
......+||||||||++|||||+.+|+++||||||++||+.+...+.+.
T Consensus 119 ~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~------------------------------- 167 (201)
T cd03231 119 EDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEA------------------------------- 167 (201)
T ss_pred hcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH-------------------------------
Confidence 3456679999999999999999999999999999999999988877663
Q ss_pred hhhhhhccccceeeeeeeehheec-ccceEEEe
Q psy12535 121 SLVRTSFLKEKTVMLITHQIQYLT-HVDHVMLL 152 (209)
Q Consensus 121 ~~~~~~~~~~~TiIvitH~l~~l~-~~DrV~~L 152 (209)
+......++|+|++||+...+. .+++++++
T Consensus 168 --l~~~~~~g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 168 --MAGHCARGGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred --HHHHHhCCCEEEEEecCchhhhhccceeEec
Confidence 2222334789999999877654 57999887
No 341
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.72 E-value=3e-18 Score=162.82 Aligned_cols=92 Identities=27% Similarity=0.400 Sum_probs=75.9
Q ss_pred ecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchh
Q psy12535 41 VGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGAL 120 (209)
Q Consensus 41 vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (209)
....+.+|||||||||+|||||+.+|+||||||||++||+.+...+.+.
T Consensus 437 ~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~------------------------------- 485 (552)
T TIGR03719 437 QQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEA------------------------------- 485 (552)
T ss_pred hcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH-------------------------------
Confidence 4556789999999999999999999999999999999999988887663
Q ss_pred hhhhhhccccceeeeeeeehheecc-cceEEEeec-ccee-ecchhhHHhh
Q psy12535 121 SLVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEK-GSVE-AFGTTTQLLA 168 (209)
Q Consensus 121 ~~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~-G~i~-~~G~~~~l~~ 168 (209)
+... +.|||+|||+++.+.. ||+|++|++ |++. ..|+.+++.+
T Consensus 486 --l~~~---~~~viivsHd~~~~~~~~d~i~~l~~~~~~~~~~g~~~~~~~ 531 (552)
T TIGR03719 486 --LLEF---AGCAVVISHDRWFLDRIATHILAFEGDSHVEWFEGNYSEYEE 531 (552)
T ss_pred --HHHC---CCeEEEEeCCHHHHHHhCCEEEEEECCCeEEEeCCCHHHHHH
Confidence 2222 2389999999998875 899999986 5776 5677766543
No 342
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.72 E-value=5.2e-18 Score=175.97 Aligned_cols=100 Identities=25% Similarity=0.299 Sum_probs=83.4
Q ss_pred CCceeecc-cceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccc
Q psy12535 36 GDRTLVGD-KGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSAL 114 (209)
Q Consensus 36 g~~t~vg~-~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (209)
-.+|.+|. ....|||||||||+||++|+.+|+|++|||||+|||+.++..+.+.
T Consensus 197 ~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vlllDEPTsgLD~~~~~~i~~~------------------------- 251 (1394)
T TIGR00956 197 TRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRA------------------------- 251 (1394)
T ss_pred ccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHH-------------------------
Confidence 34677764 5678999999999999999999999999999999999988888763
Q ss_pred cccchhhhhhhhcc-ccceeeeeeeeh-hee-cccceEEEeeccceeecchhhHHhh
Q psy12535 115 GVRGALSLVRTSFL-KEKTVMLITHQI-QYL-THVDHVMLLEKGSVEAFGTTTQLLA 168 (209)
Q Consensus 115 ~~~~~~~~~~~~~~-~~~TiIvitH~l-~~l-~~~DrV~~L~~G~i~~~G~~~~l~~ 168 (209)
+++... .|+|||+++|++ +.+ ..+|+|++|++|++++.|+++++..
T Consensus 252 --------L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~~ 300 (1394)
T TIGR00956 252 --------LKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQ 300 (1394)
T ss_pred --------HHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHHH
Confidence 333333 388999999997 344 4589999999999999999988843
No 343
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.72 E-value=3.6e-18 Score=171.13 Aligned_cols=105 Identities=27% Similarity=0.457 Sum_probs=89.0
Q ss_pred CCce-eecccceecCCccchhhhhHHHHhhhc---ceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhc
Q psy12535 36 GDRT-LVGDKGVSLSGGQRARISLARAVYKRA---DVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFG 111 (209)
Q Consensus 36 g~~t-~vg~~g~~LSgGqrQRlaiARal~~~p---~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (209)
|+.. .++....+|||||+|||+|||+|+.+| +++||||||++||+.....+++.
T Consensus 818 gL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~---------------------- 875 (943)
T PRK00349 818 GLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEV---------------------- 875 (943)
T ss_pred CCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHH----------------------
Confidence 4443 367888999999999999999999999 99999999999999988877663
Q ss_pred ccccccchhhhhhhhccccceeeeeeeehheecccceEEEe------eccceeecchhhHHhhccCCc
Q psy12535 112 SALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLL------EKGSVEAFGTTTQLLASGLDF 173 (209)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L------~~G~i~~~G~~~~l~~~~~~~ 173 (209)
+.+...+|+|||+|||+++.+..+|+|+.| ++|+|++.|+++++..+...+
T Consensus 876 -----------L~~l~~~G~TVIiitH~~~~i~~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~~~~~s~ 932 (943)
T PRK00349 876 -----------LHRLVDKGNTVVVIEHNLDVIKTADWIIDLGPEGGDGGGEIVATGTPEEVAKVEASY 932 (943)
T ss_pred -----------HHHHHhCCCEEEEEecCHHHHHhCCEEEEecCCcCCCCCEEEEeCCHHHHHhCcccH
Confidence 223333588999999999998889999999 799999999999998765443
No 344
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.72 E-value=3.2e-18 Score=137.02 Aligned_cols=76 Identities=38% Similarity=0.596 Sum_probs=65.3
Q ss_pred cCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhhhhhhc
Q psy12535 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSF 127 (209)
Q Consensus 48 LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (209)
||+||+||++||||++.+|+++||||||++||..+...+.+.+ ....
T Consensus 81 lS~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l---------------------------------~~~~ 127 (157)
T cd00267 81 LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELL---------------------------------RELA 127 (157)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHH---------------------------------HHHH
Confidence 9999999999999999999999999999999998877775532 2222
Q ss_pred cccceeeeeeeehheecc-cceEEEeeccc
Q psy12535 128 LKEKTVMLITHQIQYLTH-VDHVMLLEKGS 156 (209)
Q Consensus 128 ~~~~TiIvitH~l~~l~~-~DrV~~L~~G~ 156 (209)
..++|+|++||+++.+.. +|++++|++|+
T Consensus 128 ~~~~tii~~sh~~~~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 128 EEGRTVIIVTHDPELAELAADRVIVLKDGK 157 (157)
T ss_pred HCCCEEEEEeCCHHHHHHhCCEEEEEeCcC
Confidence 236899999999999887 59999999875
No 345
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.72 E-value=3.5e-18 Score=162.55 Aligned_cols=93 Identities=27% Similarity=0.379 Sum_probs=77.1
Q ss_pred ecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchh
Q psy12535 41 VGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGAL 120 (209)
Q Consensus 41 vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (209)
....+.+|||||||||+||||++.+|+||||||||++||+.+...+.+.+
T Consensus 439 ~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l------------------------------ 488 (556)
T PRK11819 439 QQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEAL------------------------------ 488 (556)
T ss_pred hcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHH------------------------------
Confidence 45667899999999999999999999999999999999999888876632
Q ss_pred hhhhhhccccceeeeeeeehheecc-cceEEEeec-ccee-ecchhhHHhhc
Q psy12535 121 SLVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEK-GSVE-AFGTTTQLLAS 169 (209)
Q Consensus 121 ~~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~-G~i~-~~G~~~~l~~~ 169 (209)
... . .|||+|||+++.+.. ||+|++|++ |++. ..|+++++.+.
T Consensus 489 ---~~~--~-~tvi~vtHd~~~~~~~~d~i~~l~~~g~~~~~~g~~~~~~~~ 534 (556)
T PRK11819 489 ---LEF--P-GCAVVISHDRWFLDRIATHILAFEGDSQVEWFEGNFQEYEED 534 (556)
T ss_pred ---HhC--C-CeEEEEECCHHHHHHhCCEEEEEECCCeEEEecCCHHHHHHH
Confidence 221 2 389999999998865 899999986 7876 57888776544
No 346
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.71 E-value=2.6e-18 Score=143.01 Aligned_cols=79 Identities=28% Similarity=0.345 Sum_probs=65.5
Q ss_pred eecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccch
Q psy12535 40 LVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGA 119 (209)
Q Consensus 40 ~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (209)
.......+|||||+||++||||++.+|++|||||||++||+.+...+.+.
T Consensus 120 ~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~~~------------------------------ 169 (200)
T PRK13540 120 LIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITK------------------------------ 169 (200)
T ss_pred hhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHH------------------------------
Confidence 34556678999999999999999999999999999999999988877663
Q ss_pred hhhhhhhccccceeeeeeeehheecccceEEE
Q psy12535 120 LSLVRTSFLKEKTVMLITHQIQYLTHVDHVML 151 (209)
Q Consensus 120 ~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~ 151 (209)
+++....+.|||++||+...+..+|.-++
T Consensus 170 ---l~~~~~~~~tiii~sh~~~~~~~~d~~~~ 198 (200)
T PRK13540 170 ---IQEHRAKGGAVLLTSHQDLPLNKADYEEY 198 (200)
T ss_pred ---HHHHHHcCCEEEEEeCCchhccccchhhc
Confidence 22323357899999999999988876543
No 347
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.71 E-value=3.4e-18 Score=160.68 Aligned_cols=89 Identities=26% Similarity=0.360 Sum_probs=78.7
Q ss_pred ecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchh
Q psy12535 41 VGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGAL 120 (209)
Q Consensus 41 vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (209)
......+||.||||.|+||||+..+++|+|||||||+|+......+|+
T Consensus 139 ~~~~v~~LsiaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~-------------------------------- 186 (500)
T COG1129 139 PDTLVGDLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFD-------------------------------- 186 (500)
T ss_pred hhhhhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH--------------------------------
Confidence 345567899999999999999999999999999999999988888877
Q ss_pred hhhhhhccccceeeeeeeehheec-ccceEEEeeccceeecch
Q psy12535 121 SLVRTSFLKEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGT 162 (209)
Q Consensus 121 ~~~~~~~~~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~ 162 (209)
+++++..+|.+||+|||+++.+. .||||.||++|+++..++
T Consensus 187 -~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~ 228 (500)
T COG1129 187 -LIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRP 228 (500)
T ss_pred -HHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeecc
Confidence 45555668999999999999875 589999999999988777
No 348
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.71 E-value=3.6e-18 Score=141.56 Aligned_cols=81 Identities=20% Similarity=0.229 Sum_probs=66.4
Q ss_pred CceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccc
Q psy12535 37 DRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGV 116 (209)
Q Consensus 37 ~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (209)
+...+...+.+||||||||++||||++.+|+++||||||++||+.+...+.+.
T Consensus 113 l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD~~~~~~l~~~--------------------------- 165 (195)
T PRK13541 113 LHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNL--------------------------- 165 (195)
T ss_pred CHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH---------------------------
Confidence 34445667789999999999999999999999999999999999987777553
Q ss_pred cchhhhhhhhccccceeeeeeeehheecccceEE
Q psy12535 117 RGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVM 150 (209)
Q Consensus 117 ~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~ 150 (209)
++....++.|+|++||+++.+..+|-|.
T Consensus 166 ------l~~~~~~~~tiii~sh~~~~i~~~~~~~ 193 (195)
T PRK13541 166 ------IVMKANSGGIVLLSSHLESSIKSAQILQ 193 (195)
T ss_pred ------HHHHHhCCCEEEEEeCCccccchhheec
Confidence 2222235789999999999998887653
No 349
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.71 E-value=5.6e-18 Score=142.69 Aligned_cols=88 Identities=15% Similarity=0.181 Sum_probs=73.3
Q ss_pred CceeecccceecCCccchhhhhHHHHhh----------hcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccch
Q psy12535 37 DRTLVGDKGVSLSGGQRARISLARAVYK----------RADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWG 106 (209)
Q Consensus 37 ~~t~vg~~g~~LSgGqrQRlaiARal~~----------~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (209)
+++.+...+.+||+||+||++||||++. +|+++||||||++||+.....+.+.
T Consensus 113 l~~~l~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~----------------- 175 (213)
T cd03279 113 FDRFLARPVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATA----------------- 175 (213)
T ss_pred hHHHhcCCccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHH-----------------
Confidence 6677788889999999999999999985 5689999999999999887777552
Q ss_pred hhhhcccccccchhhhhhhhccccceeeeeeeehheecc-cceEEEeeccce
Q psy12535 107 RSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGSV 157 (209)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i 157 (209)
+.+...+++|+|+|||+++.+.. +|++++|++|-+
T Consensus 176 ----------------l~~~~~~~~tii~itH~~~~~~~~~~~i~~~~~~~~ 211 (213)
T cd03279 176 ----------------LELIRTENRMVGVISHVEELKERIPQRLEVIKTPGG 211 (213)
T ss_pred ----------------HHHHHhCCCEEEEEECchHHHHhhCcEEEEEecCCC
Confidence 22323347899999999998876 699999998854
No 350
>PLN03140 ABC transporter G family member; Provisional
Probab=99.71 E-value=4.6e-18 Score=176.89 Aligned_cols=94 Identities=27% Similarity=0.435 Sum_probs=78.5
Q ss_pred ceeecccc-eecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccc
Q psy12535 38 RTLVGDKG-VSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGV 116 (209)
Q Consensus 38 ~t~vg~~g-~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (209)
++.+|..+ ..|||||||||+||++|+.+|+||+|||||||||+.++..+++.
T Consensus 1009 ~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~--------------------------- 1061 (1470)
T PLN03140 1009 DAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT--------------------------- 1061 (1470)
T ss_pred CCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH---------------------------
Confidence 55665443 68999999999999999999999999999999999988888763
Q ss_pred cchhhhhhhhccccceeeeeeeehhe--ecccceEEEeec-cceeecchhh
Q psy12535 117 RGALSLVRTSFLKEKTVMLITHQIQY--LTHVDHVMLLEK-GSVEAFGTTT 164 (209)
Q Consensus 117 ~~~~~~~~~~~~~~~TiIvitH~l~~--l~~~DrV~~L~~-G~i~~~G~~~ 164 (209)
+++...+|+|||+++|+++. ...+|++++|++ |++++.|+..
T Consensus 1062 ------L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G~~~ 1106 (1470)
T PLN03140 1062 ------VRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLG 1106 (1470)
T ss_pred ------HHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEECCcc
Confidence 33334458999999999984 456899999996 8999999863
No 351
>PLN03073 ABC transporter F family; Provisional
Probab=99.70 E-value=8e-18 Score=164.95 Aligned_cols=90 Identities=28% Similarity=0.397 Sum_probs=76.1
Q ss_pred cccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhh
Q psy12535 42 GDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALS 121 (209)
Q Consensus 42 g~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (209)
.....+|||||||||+|||||+.+|+||||||||++||+.+...+.+.
T Consensus 339 ~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~-------------------------------- 386 (718)
T PLN03073 339 VKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETY-------------------------------- 386 (718)
T ss_pred hCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHH--------------------------------
Confidence 445679999999999999999999999999999999999887776552
Q ss_pred hhhhhccccceeeeeeeehheecc-cceEEEeecccee-ecchhhHHh
Q psy12535 122 LVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGSVE-AFGTTTQLL 167 (209)
Q Consensus 122 ~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~-~~G~~~~l~ 167 (209)
++. -+.|||+|||+++.+.. ||+|++|++|++. ..|+++++.
T Consensus 387 -L~~---~~~tviivsHd~~~l~~~~d~i~~l~~g~i~~~~g~~~~~~ 430 (718)
T PLN03073 387 -LLK---WPKTFIVVSHAREFLNTVVTDILHLHGQKLVTYKGDYDTFE 430 (718)
T ss_pred -HHH---cCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHHH
Confidence 222 16799999999999876 8999999999996 577776554
No 352
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.70 E-value=8.8e-18 Score=162.25 Aligned_cols=91 Identities=27% Similarity=0.436 Sum_probs=75.6
Q ss_pred ecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchh
Q psy12535 41 VGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGAL 120 (209)
Q Consensus 41 vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (209)
+...+..|||||||||+|||||+.+|+||||||||++||+.+...+.+.
T Consensus 434 ~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~------------------------------- 482 (635)
T PRK11147 434 AMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEEL------------------------------- 482 (635)
T ss_pred HhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHH-------------------------------
Confidence 4456679999999999999999999999999999999999887666542
Q ss_pred hhhhhhccccceeeeeeeehheecc-cceEEEee-ccceee-cchhhHHh
Q psy12535 121 SLVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLE-KGSVEA-FGTTTQLL 167 (209)
Q Consensus 121 ~~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~-~G~i~~-~G~~~~l~ 167 (209)
++.. +.|||+|||+.+++.. ||+|++|+ +|+|.. .|++++..
T Consensus 483 --l~~~---~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~~y~ 527 (635)
T PRK11147 483 --LDSY---QGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHDAR 527 (635)
T ss_pred --HHhC---CCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHHHHH
Confidence 2221 4599999999999865 89999998 899865 57887764
No 353
>PRK13409 putative ATPase RIL; Provisional
Probab=99.70 E-value=6.4e-18 Score=162.42 Aligned_cols=86 Identities=26% Similarity=0.392 Sum_probs=72.9
Q ss_pred CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535 36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG 115 (209)
Q Consensus 36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (209)
|++........+|||||||||+||+||+.+|+||||||||++||+.....+++.
T Consensus 201 ~l~~~~~~~~~~LSgGe~qrv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~-------------------------- 254 (590)
T PRK13409 201 GLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARL-------------------------- 254 (590)
T ss_pred CCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHH--------------------------
Confidence 444556777889999999999999999999999999999999999988777663
Q ss_pred ccchhhhhhhhccccceeeeeeeehheecc-cceEEEeecc
Q psy12535 116 VRGALSLVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKG 155 (209)
Q Consensus 116 ~~~~~~~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G 155 (209)
++.... ++|||+|||+++.+.. +|+|++|+++
T Consensus 255 -------i~~l~~-g~tvIivsHd~~~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 255 -------IRELAE-GKYVLVVEHDLAVLDYLADNVHIAYGE 287 (590)
T ss_pred -------HHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 333344 8899999999999875 7999999863
No 354
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.70 E-value=1.3e-17 Score=144.33 Aligned_cols=94 Identities=27% Similarity=0.425 Sum_probs=77.8
Q ss_pred CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535 36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG 115 (209)
Q Consensus 36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (209)
|.....++.-.+||-|||||+-|||||+.+|++||||||++|||......+.+.+.
T Consensus 160 g~~~la~r~~~~LS~Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~------------------------ 215 (257)
T COG1119 160 GAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLE------------------------ 215 (257)
T ss_pred chhhhccCchhhcCHhHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHH------------------------
Confidence 34445667778999999999999999999999999999999999988777665332
Q ss_pred ccchhhhhhhhcc--ccceeeeeeeehheeccc-ceEEEeeccceeecch
Q psy12535 116 VRGALSLVRTSFL--KEKTVMLITHQIQYLTHV-DHVMLLEKGSVEAFGT 162 (209)
Q Consensus 116 ~~~~~~~~~~~~~--~~~TiIvitH~l~~l~~~-DrV~~L~~G~i~~~G~ 162 (209)
.... .+.|+|+|||..+.+..| ++++.+++|+++..|.
T Consensus 216 ---------~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~~g~v~~~g~ 256 (257)
T COG1119 216 ---------ELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVAQGK 256 (257)
T ss_pred ---------HHhcCCCCceEEEEEcchhhcccccceEEEeeCCceeeccc
Confidence 2222 367999999999998764 9999999999998773
No 355
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.70 E-value=6.7e-18 Score=140.11 Aligned_cols=80 Identities=29% Similarity=0.338 Sum_probs=61.7
Q ss_pred ceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccccc
Q psy12535 38 RTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVR 117 (209)
Q Consensus 38 ~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (209)
.......+.+||||||||++||||++.+|+++||||||++||+.+...+.+.
T Consensus 118 ~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~---------------------------- 169 (198)
T TIGR01189 118 TGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGL---------------------------- 169 (198)
T ss_pred HHHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHH----------------------------
Confidence 3334556679999999999999999999999999999999999887777553
Q ss_pred chhhhhhhhccccceeeeeeeehheecccceEEE
Q psy12535 118 GALSLVRTSFLKEKTVMLITHQIQYLTHVDHVML 151 (209)
Q Consensus 118 ~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~ 151 (209)
+.....++.|+|++||+...+.. ++++.
T Consensus 170 -----l~~~~~~~~tii~~sH~~~~~~~-~~~~~ 197 (198)
T TIGR01189 170 -----LRAHLARGGIVLLTTHQDLGLVE-ARELR 197 (198)
T ss_pred -----HHHHHhCCCEEEEEEcccccccc-eEEee
Confidence 22223357899999998854332 55443
No 356
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.70 E-value=1e-17 Score=147.17 Aligned_cols=108 Identities=26% Similarity=0.331 Sum_probs=92.0
Q ss_pred CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535 36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG 115 (209)
Q Consensus 36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (209)
+++..+..+...||-|||-|..||.||+++|+||+|||||-|||...+..+.+
T Consensus 145 dl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~--------------------------- 197 (325)
T COG4586 145 DLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIRE--------------------------- 197 (325)
T ss_pred cchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHHH---------------------------
Confidence 45566667778999999999999999999999999999999999988877765
Q ss_pred ccchhhhhhhhc-cccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhccCCchhc
Q psy12535 116 VRGALSLVRTSF-LKEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLASGLDFTQL 176 (209)
Q Consensus 116 ~~~~~~~~~~~~-~~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~~~~~~~~ 176 (209)
+++... ..+.||+++||+++.+. .||||++|++|+++..|+.+++.+.+..+..+
T Consensus 198 ------Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv~dg~l~~l~~~f~~~k~~ 254 (325)
T COG4586 198 ------FLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQEQFGPYKEF 254 (325)
T ss_pred ------HHHHHHHhhCceEEEEecchhhHHHhhhheEEeeCCcEeecccHHHHHHHhCCceEE
Confidence 223322 35889999999999886 59999999999999999999999887765544
No 357
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.68 E-value=1.7e-17 Score=165.97 Aligned_cols=98 Identities=29% Similarity=0.460 Sum_probs=83.7
Q ss_pred CCce-eecccceecCCccchhhhhHHHHhh---hcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhc
Q psy12535 36 GDRT-LVGDKGVSLSGGQRARISLARAVYK---RADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFG 111 (209)
Q Consensus 36 g~~t-~vg~~g~~LSgGqrQRlaiARal~~---~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (209)
|+.. .+++...+|||||+|||+||++|+. +|++|||||||++||+.....+.+.
T Consensus 816 gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~---------------------- 873 (924)
T TIGR00630 816 GLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEV---------------------- 873 (924)
T ss_pred CCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHH----------------------
Confidence 4443 3578889999999999999999997 5999999999999999988888663
Q ss_pred ccccccchhhhhhhhccccceeeeeeeehheecccceEEEe------eccceeecchhhHH
Q psy12535 112 SALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLL------EKGSVEAFGTTTQL 166 (209)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L------~~G~i~~~G~~~~l 166 (209)
+.....+|+|||+|||+++.+..+|+|++| ++|+|++.|+++++
T Consensus 874 -----------L~~l~~~G~TVIvi~H~~~~i~~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 874 -----------LQRLVDQGNTVVVIEHNLDVIKTADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred -----------HHHHHhCCCEEEEEeCCHHHHHhCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 223334588999999999998889999999 79999999998875
No 358
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.68 E-value=1.8e-17 Score=138.47 Aligned_cols=107 Identities=29% Similarity=0.494 Sum_probs=88.7
Q ss_pred eeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccc
Q psy12535 39 TLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRG 118 (209)
Q Consensus 39 t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (209)
+.++..+..+||||+||+.|||-|+..|+++++||||.|||...+..+.+.+. .
T Consensus 143 ~RiDD~PrtFSGGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllr-g------------------------- 196 (258)
T COG4107 143 DRIDDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLR-G------------------------- 196 (258)
T ss_pred ccccCcccccchHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHH-H-------------------------
Confidence 45667778999999999999999999999999999999999988877766321 1
Q ss_pred hhhhhhhhccccceeeeeeeehheecc-cceEEEeeccceeecchhhHHhhccC-Cchhcc
Q psy12535 119 ALSLVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQLLASGL-DFTQLL 177 (209)
Q Consensus 119 ~~~~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l~~~~~-~~~~~~ 177 (209)
+..+ -+-++|+||||+..++. ++|.++|++|++++.|-.+.++.... .|++++
T Consensus 197 ---Lv~~---l~la~viVTHDl~VarLla~rlmvmk~g~vve~GLTDrvLDDP~hPYTQLL 251 (258)
T COG4107 197 ---LVRE---LGLAVVIVTHDLAVARLLADRLMVMKQGQVVESGLTDRVLDDPHHPYTQLL 251 (258)
T ss_pred ---HHHh---cCceEEEEechhHHHHHhhhcceeecCCCEeccccccccccCCCCchHHHH
Confidence 1111 26799999999999886 79999999999999999998886543 566664
No 359
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.68 E-value=2.3e-17 Score=172.65 Aligned_cols=100 Identities=29% Similarity=0.413 Sum_probs=86.4
Q ss_pred CCcee-ecccceecCCccchhhhhHHHHh---hhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhc
Q psy12535 36 GDRTL-VGDKGVSLSGGQRARISLARAVY---KRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFG 111 (209)
Q Consensus 36 g~~t~-vg~~g~~LSgGqrQRlaiARal~---~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (209)
|+... +++...+|||||+|||+|||||+ .+|++|||||||++||+.....+++.
T Consensus 797 GL~~l~l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~l---------------------- 854 (1809)
T PRK00635 797 GLDYLPLGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYV---------------------- 854 (1809)
T ss_pred CCcchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHH----------------------
Confidence 56555 68888999999999999999998 59999999999999999988887663
Q ss_pred ccccccchhhhhhhhccccceeeeeeeehheecccceEEEee------ccceeecchhhHHhh
Q psy12535 112 SALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLE------KGSVEAFGTTTQLLA 168 (209)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~------~G~i~~~G~~~~l~~ 168 (209)
+.....+|+|||+|||+++.+..+|+|++|. +|++++.|+++++..
T Consensus 855 -----------L~~L~~~G~TVIiIsHdl~~i~~aDrVi~L~p~gg~~~G~iv~~Gtpeel~~ 906 (1809)
T PRK00635 855 -----------LQSLTHQGHTVVIIEHNMHVVKVADYVLELGPEGGNLGGYLLASCSPEELIH 906 (1809)
T ss_pred -----------HHHHHhcCCEEEEEeCCHHHHHhCCEEEEEccCCCCCCCEEEEeCCHHHHHh
Confidence 3333345889999999999987789999996 789999999999875
No 360
>PLN03140 ABC transporter G family member; Provisional
Probab=99.68 E-value=2.8e-17 Score=171.12 Aligned_cols=101 Identities=21% Similarity=0.327 Sum_probs=84.1
Q ss_pred CCCceeecc-cceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccc
Q psy12535 35 SGDRTLVGD-KGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSA 113 (209)
Q Consensus 35 ~g~~t~vg~-~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (209)
.-.+|.+|. ....|||||||||+||++|+.+|++++|||||+|||+.+...+.+.+
T Consensus 323 ~~~~t~vg~~~~rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~L----------------------- 379 (1470)
T PLN03140 323 ICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCL----------------------- 379 (1470)
T ss_pred cccCceeCCccccCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHH-----------------------
Confidence 344677764 45789999999999999999999999999999999999988887632
Q ss_pred ccccchhhhhhhhcc-ccceeeeeeeehh-e-ecccceEEEeeccceeecchhhHHhh
Q psy12535 114 LGVRGALSLVRTSFL-KEKTVMLITHQIQ-Y-LTHVDHVMLLEKGSVEAFGTTTQLLA 168 (209)
Q Consensus 114 ~~~~~~~~~~~~~~~-~~~TiIvitH~l~-~-l~~~DrV~~L~~G~i~~~G~~~~l~~ 168 (209)
+.... .++|+|+++|++. . ...+|+|++|++|++++.|+.+++..
T Consensus 380 ----------r~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~ivy~G~~~~~~~ 427 (1470)
T PLN03140 380 ----------QQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIVYQGPRDHILE 427 (1470)
T ss_pred ----------HHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCceEEEeCCHHHHHH
Confidence 23222 4789999999863 3 45689999999999999999988864
No 361
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.67 E-value=3e-17 Score=171.72 Aligned_cols=100 Identities=25% Similarity=0.360 Sum_probs=84.5
Q ss_pred CCcee-ecccceecCCccchhhhhHHHHhhhc--ceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcc
Q psy12535 36 GDRTL-VGDKGVSLSGGQRARISLARAVYKRA--DVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGS 112 (209)
Q Consensus 36 g~~t~-vg~~g~~LSgGqrQRlaiARal~~~p--~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (209)
|++.+ +++...+|||||+|||+|||||+.+| ++|||||||++||+.....+++.
T Consensus 464 GL~~L~ldR~~~tLSGGE~QRV~LAraL~~~p~g~lLILDEPTagLD~~~~~~L~~l----------------------- 520 (1809)
T PRK00635 464 GLPYLTPERALATLSGGEQERTALAKHLGAELIGITYILDEPSIGLHPQDTHKLINV----------------------- 520 (1809)
T ss_pred cccCCCCCCchhhCCHHHHHHHHHHHHHhcCCCCcEEEEECCccCCCHHHHHHHHHH-----------------------
Confidence 44443 46777899999999999999999999 89999999999999988887663
Q ss_pred cccccchhhhhhhhccccceeeeeeeehheecccceEEEee------ccceeecchhhHHhh
Q psy12535 113 ALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLE------KGSVEAFGTTTQLLA 168 (209)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~------~G~i~~~G~~~~l~~ 168 (209)
++++..+|.|||+|+|+++.+..||+|++|. +|+|++.|+++++..
T Consensus 521 ----------L~~L~~~G~TVIvVeHd~~vi~~aDrVi~L~pGag~~gG~Iv~~G~~~eil~ 572 (1809)
T PRK00635 521 ----------IKKLRDQGNTVLLVEHDEQMISLADRIIDIGPGAGIFGGEVLFNGSPREFLA 572 (1809)
T ss_pred ----------HHHHHhCCCEEEEEeCcHHHHHhCCEEEEEcCCcccCCCEEEEecCHHHHhh
Confidence 3333445899999999999777799999996 789999999998854
No 362
>KOG0061|consensus
Probab=99.67 E-value=3.8e-17 Score=157.70 Aligned_cols=99 Identities=29% Similarity=0.475 Sum_probs=84.8
Q ss_pred Cceeecc-cceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535 37 DRTLVGD-KGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG 115 (209)
Q Consensus 37 ~~t~vg~-~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (209)
-+|.+|. ....+|||||+||+||.-++.+|.||+|||||||||..++.++.+
T Consensus 159 ~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~--------------------------- 211 (613)
T KOG0061|consen 159 ADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQ--------------------------- 211 (613)
T ss_pred ccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHH---------------------------
Confidence 3577763 336899999999999999999999999999999999998888866
Q ss_pred ccchhhhhhhhccccceeeeeeeehhe--ecccceEEEeeccceeecchhhHHhh
Q psy12535 116 VRGALSLVRTSFLKEKTVMLITHQIQY--LTHVDHVMLLEKGSVEAFGTTTQLLA 168 (209)
Q Consensus 116 ~~~~~~~~~~~~~~~~TiIvitH~l~~--l~~~DrV~~L~~G~i~~~G~~~~l~~ 168 (209)
.+++..++|+|||++-|+++. ...+|++++|.+|+++..|+++++..
T Consensus 212 ------~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~~~~~ 260 (613)
T KOG0061|consen 212 ------LLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPRELLE 260 (613)
T ss_pred ------HHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHHHHHH
Confidence 444556679999999999975 46689999999999999999987754
No 363
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.66 E-value=5.6e-17 Score=154.20 Aligned_cols=91 Identities=30% Similarity=0.511 Sum_probs=75.2
Q ss_pred cccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhh
Q psy12535 42 GDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALS 121 (209)
Q Consensus 42 g~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (209)
....++||||||.||+||+||..+||||||||||++||..+...+-+ .+
T Consensus 148 ~~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~-~L------------------------------ 196 (530)
T COG0488 148 DRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLED-YL------------------------------ 196 (530)
T ss_pred cCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHH-HH------------------------------
Confidence 55668999999999999999999999999999999999976555433 11
Q ss_pred hhhhhccccceeeeeeeehheecc-cceEEEeecccee-ecchhhHHhh
Q psy12535 122 LVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGSVE-AFGTTTQLLA 168 (209)
Q Consensus 122 ~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~-~~G~~~~l~~ 168 (209)
.. .+| |+|+||||-.++.. |++|+.++.|++. +.|+++...+
T Consensus 197 --~~--~~g-tviiVSHDR~FLd~V~t~I~~ld~g~l~~y~Gny~~~~~ 240 (530)
T COG0488 197 --KR--YPG-TVIVVSHDRYFLDNVATHILELDRGKLTPYKGNYSSYLE 240 (530)
T ss_pred --Hh--CCC-cEEEEeCCHHHHHHHhhheEEecCCceeEecCCHHHHHH
Confidence 11 246 99999999999986 7999999999885 5678877654
No 364
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.66 E-value=5.9e-17 Score=138.54 Aligned_cols=102 Identities=25% Similarity=0.354 Sum_probs=87.2
Q ss_pred hhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchh
Q psy12535 28 EDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGR 107 (209)
Q Consensus 28 ~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (209)
+.+..++.|++..++.+..-|||||||-|+++.|.++.|+||+|||=|++|||.+...+++.--
T Consensus 129 ~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~---------------- 192 (263)
T COG1101 129 ERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTA---------------- 192 (263)
T ss_pred HHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCcEEEecchhhcCCcchHHHHHHHHH----------------
Confidence 4577889999999999999999999999999999999999999999999999999999887321
Q ss_pred hhhcccccccchhhhhhhhccccceeeeeeeehhee-cccceEEEeeccceeecc
Q psy12535 108 SFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYL-THVDHVMLLEKGSVEAFG 161 (209)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l-~~~DrV~~L~~G~i~~~G 161 (209)
+++. ..+-|.+||||+++.. .+.+|.++|++|+|+.+-
T Consensus 193 -------------kiV~---~~klTtlMVTHnm~~Al~yG~RlImLh~G~IvlDv 231 (263)
T COG1101 193 -------------KIVE---EHKLTTLMVTHNMEDALDYGNRLIMLHSGKIVLDV 231 (263)
T ss_pred -------------HHHH---hcCCceEEEeccHHHHHhhCCeEEEEeCCeEEEEc
Confidence 1221 2356999999999875 456999999999998653
No 365
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.64 E-value=1.1e-16 Score=150.63 Aligned_cols=89 Identities=21% Similarity=0.408 Sum_probs=77.7
Q ss_pred ccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhh
Q psy12535 43 DKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSL 122 (209)
Q Consensus 43 ~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (209)
....+||||.||||.|||.|+.+|+||||||||.|+|.-++..++. +
T Consensus 397 ~~v~~LSGGNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~---------------------------------l 443 (500)
T COG1129 397 QPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYR---------------------------------L 443 (500)
T ss_pred chhhcCCchhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHH---------------------------------H
Confidence 4557899999999999999999999999999999999998888877 4
Q ss_pred hhhhccccceeeeeeeehheec-ccceEEEeeccceeecchhh
Q psy12535 123 VRTSFLKEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTT 164 (209)
Q Consensus 123 ~~~~~~~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~ 164 (209)
++++..+|++||+||.++.++- .||||+||++|+++.+=+.+
T Consensus 444 i~~lA~~G~ail~iSSElpEll~~~DRIlVm~~Gri~~e~~~~ 486 (500)
T COG1129 444 IRELAAEGKAILMISSELPELLGLSDRILVMREGRIVGELDRE 486 (500)
T ss_pred HHHHHHCCCEEEEEeCChHHHHhhCCEEEEEECCEEEEEeccc
Confidence 5555678999999999998865 69999999999998754443
No 366
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.64 E-value=1.1e-16 Score=134.13 Aligned_cols=80 Identities=21% Similarity=0.214 Sum_probs=66.2
Q ss_pred ecccceecCCccchhhhhHHHHh----hhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccc
Q psy12535 41 VGDKGVSLSGGQRARISLARAVY----KRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGV 116 (209)
Q Consensus 41 vg~~g~~LSgGqrQRlaiARal~----~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (209)
....+.+||||||||++|||+++ .+|+++||||||++||+.....+.+.
T Consensus 107 ~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~l~~~--------------------------- 159 (197)
T cd03278 107 KVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFARL--------------------------- 159 (197)
T ss_pred cccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHHHHHH---------------------------
Confidence 34567899999999999999997 46799999999999999988777663
Q ss_pred cchhhhhhhhccccceeeeeeeehheecccceEEEeec
Q psy12535 117 RGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEK 154 (209)
Q Consensus 117 ~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~ 154 (209)
+++.. ++.|||+|||+++.+..+|+++.|..
T Consensus 160 ------l~~~~-~~~tiIiitH~~~~~~~~d~v~~~~~ 190 (197)
T cd03278 160 ------LKEFS-KETQFIVITHRKGTMEAADRLYGVTM 190 (197)
T ss_pred ------HHHhc-cCCEEEEEECCHHHHhhcceEEEEEe
Confidence 22222 36799999999998888999999864
No 367
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.64 E-value=1.4e-16 Score=132.10 Aligned_cols=89 Identities=28% Similarity=0.379 Sum_probs=76.1
Q ss_pred ceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccccc
Q psy12535 38 RTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVR 117 (209)
Q Consensus 38 ~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (209)
++.+..+..+||||+|||++|+|-|..-|+|||||||||+||+.+++.+-+.+..-
T Consensus 124 ~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~nkr~ie~mi~~~------------------------ 179 (223)
T COG4619 124 DSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRY------------------------ 179 (223)
T ss_pred hhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhcChhhHHHHHHHHHHH------------------------
Confidence 56777888999999999999999999999999999999999999998886644321
Q ss_pred chhhhhhhhccccceeeeeeeehhe-ecccceEEEeecccee
Q psy12535 118 GALSLVRTSFLKEKTVMLITHQIQY-LTHVDHVMLLEKGSVE 158 (209)
Q Consensus 118 ~~~~~~~~~~~~~~TiIvitH~l~~-l~~~DrV~~L~~G~i~ 158 (209)
+ ..++..++.|||+.+. ++.+|+++.+..|++-
T Consensus 180 -----v---~~q~vAv~WiTHd~dqa~rha~k~itl~~G~~~ 213 (223)
T COG4619 180 -----V---REQNVAVLWITHDKDQAIRHADKVITLQPGHAG 213 (223)
T ss_pred -----h---hhhceEEEEEecChHHHhhhhheEEEeccCccc
Confidence 1 1357799999999987 7889999999998763
No 368
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.63 E-value=1.8e-16 Score=134.87 Aligned_cols=79 Identities=22% Similarity=0.215 Sum_probs=65.4
Q ss_pred ecccceecCCccchhhhhHHHHhh----hcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccc
Q psy12535 41 VGDKGVSLSGGQRARISLARAVYK----RADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGV 116 (209)
Q Consensus 41 vg~~g~~LSgGqrQRlaiARal~~----~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (209)
.++++..||||||||++||||++. +|+++||||||++||+.+...+++.+
T Consensus 152 ~~~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l-------------------------- 205 (243)
T cd03272 152 EQQEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMI-------------------------- 205 (243)
T ss_pred ccccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHH--------------------------
Confidence 356788999999999999999974 58999999999999999888776632
Q ss_pred cchhhhhhhhccccceeeeeeeehheecccceEEEee
Q psy12535 117 RGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLE 153 (209)
Q Consensus 117 ~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~ 153 (209)
+... +++|+|++||+.+....||++++|.
T Consensus 206 -------~~~~-~~~~ii~~~h~~~~~~~~d~i~~l~ 234 (243)
T cd03272 206 -------KELS-DGAQFITTTFRPELLEVADKFYGVK 234 (243)
T ss_pred -------HHHh-CCCEEEEEecCHHHHhhCCEEEEEE
Confidence 2222 3678899999888777799999995
No 369
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.63 E-value=2.7e-16 Score=132.28 Aligned_cols=82 Identities=23% Similarity=0.321 Sum_probs=67.9
Q ss_pred eecccceecCCccchh------hhhHHHHhhhcceeeccCcchhhhhhhhh-hhhhhhhhccccCCCCccccchhhhhcc
Q psy12535 40 LVGDKGVSLSGGQRAR------ISLARAVYKRADVYLLDDPLSAVDAHVGK-HLFEDCITGLHTGVPRFDSRWGRSFFGS 112 (209)
Q Consensus 40 ~vg~~g~~LSgGqrQR------laiARal~~~p~illLDEPts~LD~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (209)
.+.+.+..||+||+|| ++||||++.+|+++||||||++||+.... .+.+.
T Consensus 108 ~~~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~~~~~l~~~----------------------- 164 (204)
T cd03240 108 PLLDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEI----------------------- 164 (204)
T ss_pred HHhcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHHHHHHHHHH-----------------------
Confidence 4466778999999996 78999999999999999999999998777 66553
Q ss_pred cccccchhhhhhhhccc-cceeeeeeeehheecccceEEEeec
Q psy12535 113 ALGVRGALSLVRTSFLK-EKTVMLITHQIQYLTHVDHVMLLEK 154 (209)
Q Consensus 113 ~~~~~~~~~~~~~~~~~-~~TiIvitH~l~~l~~~DrV~~L~~ 154 (209)
+.....+ +.|||++||+++.+..+|+|++|++
T Consensus 165 ----------l~~~~~~~~~~iiiitH~~~~~~~~d~i~~l~~ 197 (204)
T cd03240 165 ----------IEERKSQKNFQLIVITHDEELVDAADHIYRVEK 197 (204)
T ss_pred ----------HHHHHhccCCEEEEEEecHHHHhhCCEEEEEee
Confidence 2222233 7899999999998888999999964
No 370
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.62 E-value=2.8e-16 Score=146.49 Aligned_cols=94 Identities=28% Similarity=0.461 Sum_probs=79.6
Q ss_pred CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535 36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG 115 (209)
Q Consensus 36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (209)
|++-...++..+||-|+||||.|-+||+++|++||||||||-|-|.....+|+
T Consensus 129 Gl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~--------------------------- 181 (501)
T COG3845 129 GLPVDPDAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFE--------------------------- 181 (501)
T ss_pred CCCCCccceeecCCcchhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH---------------------------
Confidence 44444556778999999999999999999999999999999999988888877
Q ss_pred ccchhhhhhhhccccceeeeeeeehheec-ccceEEEeeccceeecch
Q psy12535 116 VRGALSLVRTSFLKEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGT 162 (209)
Q Consensus 116 ~~~~~~~~~~~~~~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~ 162 (209)
.++.+...|+|||+|||.+..+. .||||.||+.|+++..-+
T Consensus 182 ------~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvgt~~ 223 (501)
T COG3845 182 ------ILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVGTVD 223 (501)
T ss_pred ------HHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEeeec
Confidence 34445668999999999999876 589999999999865443
No 371
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.62 E-value=2e-16 Score=136.20 Aligned_cols=77 Identities=18% Similarity=0.228 Sum_probs=65.0
Q ss_pred ceecCCccchhhhhHHHHhhh----cceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchh
Q psy12535 45 GVSLSGGQRARISLARAVYKR----ADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGAL 120 (209)
Q Consensus 45 g~~LSgGqrQRlaiARal~~~----p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (209)
+..||+|||||++||||++.+ |+++||||||++||+.....+.+.
T Consensus 153 ~~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~------------------------------- 201 (247)
T cd03275 153 MDNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASY------------------------------- 201 (247)
T ss_pred HHHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHH-------------------------------
Confidence 478999999999999999875 899999999999999887777652
Q ss_pred hhhhhhccccceeeeeeeehheecccceEEEeec
Q psy12535 121 SLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEK 154 (209)
Q Consensus 121 ~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~ 154 (209)
+.....++.|+|+|||+.+.+..+|++++|..
T Consensus 202 --i~~~~~~g~~vi~isH~~~~~~~~d~i~~~~~ 233 (247)
T cd03275 202 --IREQAGPNFQFIVISLKEEFFSKADALVGVYR 233 (247)
T ss_pred --HHHhccCCcEEEEEECCHHHHhhCCeEEEEEe
Confidence 23333347899999999988888999999863
No 372
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.62 E-value=2.8e-16 Score=131.69 Aligned_cols=83 Identities=16% Similarity=0.110 Sum_probs=68.7
Q ss_pred ecccceecCCccchhhhhHHHH----hhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccc
Q psy12535 41 VGDKGVSLSGGQRARISLARAV----YKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGV 116 (209)
Q Consensus 41 vg~~g~~LSgGqrQRlaiARal----~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (209)
....+.+||+|||||++||+|+ +.+|+++||||||++||+.....+.+.+.
T Consensus 103 ~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~~l~------------------------- 157 (198)
T cd03276 103 AVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTDLLV------------------------- 157 (198)
T ss_pred cCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHHHHH-------------------------
Confidence 4567789999999999999999 58999999999999999988877766322
Q ss_pred cchhhhhhhhcc---ccceeeeeeeehheecccceEEEeeccc
Q psy12535 117 RGALSLVRTSFL---KEKTVMLITHQIQYLTHVDHVMLLEKGS 156 (209)
Q Consensus 117 ~~~~~~~~~~~~---~~~TiIvitH~l~~l~~~DrV~~L~~G~ 156 (209)
+... .+.|||++||+++.+..+|+|.+|+.++
T Consensus 158 --------~~~~~~~~~~~iii~th~~~~i~~~d~v~~~~~~~ 192 (198)
T cd03276 158 --------KEAKKQPGRQFIFITPQDISGLASSDDVKVFRMKD 192 (198)
T ss_pred --------HHHhcCCCcEEEEEECCcccccccccceeEEEecC
Confidence 2111 2368999999999998889999998754
No 373
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.61 E-value=3.4e-16 Score=129.36 Aligned_cols=87 Identities=18% Similarity=0.260 Sum_probs=73.3
Q ss_pred hhccCCCCCceeecccceecCCccchhhhhHHHHh----hhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCcccc
Q psy12535 29 DFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVY----KRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSR 104 (209)
Q Consensus 29 ~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~----~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (209)
.+..+|+|..|.+ ||+||+||++|||+++ .+|+++|+|||+++||+.....+++.+
T Consensus 82 ~~~~~~~~~~~~~------LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L-------------- 141 (178)
T cd03239 82 SYFLVLQGKVEQI------LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMI-------------- 141 (178)
T ss_pred ceEEecCCcCccc------CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHH--------------
Confidence 4667899888887 9999999999999996 689999999999999999887776632
Q ss_pred chhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeec
Q psy12535 105 WGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEK 154 (209)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~ 154 (209)
......+.|+|++||+.+.+..+|+++.+.+
T Consensus 142 -------------------~~~~~~g~tiIiiSH~~~~~~~adrvi~i~~ 172 (178)
T cd03239 142 -------------------KEMAKHTSQFIVITLKKEMFENADKLIGVLF 172 (178)
T ss_pred -------------------HHHHhCCCEEEEEECCHHHHhhCCeEEEEEE
Confidence 2222346899999999998888999999975
No 374
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.59 E-value=5e-16 Score=131.37 Aligned_cols=100 Identities=19% Similarity=0.348 Sum_probs=81.1
Q ss_pred eeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccc
Q psy12535 39 TLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRG 118 (209)
Q Consensus 39 t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (209)
.........||.||||++.|+..++.+|++|+||||++|+-.....+.-+
T Consensus 139 ~~~~~~A~~LSHGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~tae------------------------------ 188 (249)
T COG4674 139 DERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAE------------------------------ 188 (249)
T ss_pred hhhhhhhhhhccchhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHH------------------------------
Confidence 33445566899999999999999999999999999999996543333322
Q ss_pred hhhhhhhhccccceeeeeeeehheecc-cceEEEeeccceeecchhhHHhhccCC
Q psy12535 119 ALSLVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQLLASGLD 172 (209)
Q Consensus 119 ~~~~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l~~~~~~ 172 (209)
+++. ....++|++|.|||.+++. +++|.+|+.|.|.++|+.+++.++..-
T Consensus 189 ---Ll~~-la~~hsilVVEHDM~Fvr~~A~~VTVlh~G~VL~EGsld~v~~dp~V 239 (249)
T COG4674 189 ---LLKS-LAGKHSILVVEHDMGFVREIADKVTVLHEGSVLAEGSLDEVQNDPKV 239 (249)
T ss_pred ---HHHH-HhcCceEEEEeccHHHHHHhhheeEEEeccceeecccHHHhhcCcce
Confidence 2222 2356899999999999986 799999999999999999999876543
No 375
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.59 E-value=7.3e-16 Score=132.69 Aligned_cols=79 Identities=20% Similarity=0.310 Sum_probs=66.5
Q ss_pred ecccceecCCccchhhhhHHHHh----hhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccc
Q psy12535 41 VGDKGVSLSGGQRARISLARAVY----KRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGV 116 (209)
Q Consensus 41 vg~~g~~LSgGqrQRlaiARal~----~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (209)
....+.+||+|||||++|||||+ .+|+++||||||++||+.....+++.
T Consensus 160 ~~~~~~~lS~G~~qr~~la~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~~--------------------------- 212 (251)
T cd03273 160 WKESLTELSGGQRSLVALSLILALLLFKPAPMYILDEVDAALDLSHTQNIGRM--------------------------- 212 (251)
T ss_pred hcccccccCHHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHHH---------------------------
Confidence 45677899999999999999998 57899999999999999988877663
Q ss_pred cchhhhhhhhccccceeeeeeeehheecccceEEEee
Q psy12535 117 RGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLE 153 (209)
Q Consensus 117 ~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~ 153 (209)
+++. .++.|+|+|||+.+.+..+|+|+-+.
T Consensus 213 ------l~~~-~~g~~ii~iSH~~~~~~~~d~v~~~~ 242 (251)
T cd03273 213 ------IKTH-FKGSQFIVVSLKEGMFNNANVLFRTR 242 (251)
T ss_pred ------HHHH-cCCCEEEEEECCHHHHHhCCEEEEEE
Confidence 2232 24789999999988888899998875
No 376
>KOG0059|consensus
Probab=99.58 E-value=9.4e-16 Score=153.38 Aligned_cols=99 Identities=21% Similarity=0.355 Sum_probs=85.9
Q ss_pred cccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhh
Q psy12535 42 GDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALS 121 (209)
Q Consensus 42 g~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (209)
......+|||+|+|+++|.|++.+|++++|||||+|+||..++++++.
T Consensus 693 ~~~~~~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~i-------------------------------- 740 (885)
T KOG0059|consen 693 NKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDI-------------------------------- 740 (885)
T ss_pred ccchhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHH--------------------------------
Confidence 344678999999999999999999999999999999999998888773
Q ss_pred hhhhhccccceeeeeeeehheecc-cceEEEeeccceeecchhhHHhhccCCc
Q psy12535 122 LVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQLLASGLDF 173 (209)
Q Consensus 122 ~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l~~~~~~~ 173 (209)
+.+..+.++.||++||.+++.+. |||+.+|.+|++...|+++++++..+..
T Consensus 741 -i~~~~k~g~aiiLTSHsMeE~EaLCtR~aImv~G~l~ciGs~q~LKsrfG~g 792 (885)
T KOG0059|consen 741 -IARLRKNGKAIILTSHSMEEAEALCTRTAIMVIGQLRCIGSPQELKSRYGSG 792 (885)
T ss_pred -HHHHHhcCCEEEEEcCCHHHHHHHhhhhheeecCeeEEecChHHHHhhcCCc
Confidence 33333446699999999999985 8999999999999999999999876543
No 377
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.57 E-value=2.4e-15 Score=126.59 Aligned_cols=95 Identities=27% Similarity=0.446 Sum_probs=81.3
Q ss_pred cceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhhh
Q psy12535 44 KGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLV 123 (209)
Q Consensus 44 ~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (209)
.+..||-||||||++||||+-+|+|+|.||+.++||...+.++....+. +
T Consensus 146 ~~~~la~~QKQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~Le-----------------------------L- 195 (267)
T COG4167 146 YPHMLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLE-----------------------------L- 195 (267)
T ss_pred chhhcCchhHHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHH-----------------------------H-
Confidence 4568999999999999999999999999999999999877777553221 1
Q ss_pred hhhccccceeeeeeeehheecc-cceEEEeeccceeecchhhHHhhcc
Q psy12535 124 RTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQLLASG 170 (209)
Q Consensus 124 ~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l~~~~ 170 (209)
+.+-|.+-|+|+.++..+.+ +|.|+||++|++++.|++.+++...
T Consensus 196 --Qek~GiSyiYV~QhlG~iKHi~D~viVM~EG~vvE~G~t~~v~a~P 241 (267)
T COG4167 196 --QEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERGSTADVLASP 241 (267)
T ss_pred --HHHhCceEEEEechhhHhhhhcccEEEEecCceeecCChhhhhcCC
Confidence 12247899999999999997 6999999999999999999998764
No 378
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.56 E-value=2.8e-15 Score=126.93 Aligned_cols=77 Identities=19% Similarity=0.217 Sum_probs=63.3
Q ss_pred cceecCCccchhhhhHHHHhh----hcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccch
Q psy12535 44 KGVSLSGGQRARISLARAVYK----RADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGA 119 (209)
Q Consensus 44 ~g~~LSgGqrQRlaiARal~~----~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (209)
....||+|||||++||||++. +|++++|||||++||+.+...+.+.+
T Consensus 124 ~~~~lS~G~~~r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l----------------------------- 174 (212)
T cd03274 124 NISNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYI----------------------------- 174 (212)
T ss_pred chhhcCHHHHHHHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHH-----------------------------
Confidence 346899999999999999974 47999999999999998887776532
Q ss_pred hhhhhhhccccceeeeeeeehheecccceEEEeec
Q psy12535 120 LSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEK 154 (209)
Q Consensus 120 ~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~ 154 (209)
+.. .++.|+|++||+.+....||+|++|..
T Consensus 175 ----~~~-~~~~~~iivs~~~~~~~~~d~v~~~~~ 204 (212)
T cd03274 175 ----KER-TKNAQFIVISLRNNMFELADRLVGIYK 204 (212)
T ss_pred ----HHH-cCCCEEEEEECcHHHHHhCCEEEEEEe
Confidence 222 246799999999877778999999964
No 379
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.53 E-value=1.6e-15 Score=131.09 Aligned_cols=95 Identities=24% Similarity=0.385 Sum_probs=80.4
Q ss_pred ccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhh
Q psy12535 43 DKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSL 122 (209)
Q Consensus 43 ~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (209)
.+..++|.||+-||++|-|...+|+|||+||..+..|+.=++.- +..
T Consensus 143 ~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~---------------------------------~~r 189 (249)
T COG1134 143 QPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKC---------------------------------LER 189 (249)
T ss_pred CchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHH---------------------------------HHH
Confidence 34569999999999999999999999999999999999533332 234
Q ss_pred hhhhccccceeeeeeeehheecc-cceEEEeeccceeecchhhHHhhcc
Q psy12535 123 VRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQLLASG 170 (209)
Q Consensus 123 ~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l~~~~ 170 (209)
+.+...+++|||+|||+++.++. ||++++|++|+|...|+++++....
T Consensus 190 l~e~~~~~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~~~G~~~~vi~~Y 238 (249)
T COG1134 190 LNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVIPAY 238 (249)
T ss_pred HHHHHHcCCEEEEEECCHHHHHHhcCeeEEEeCCEEEEcCCHHHHHHHH
Confidence 44544578999999999999975 8999999999999999999998643
No 380
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.52 E-value=1.1e-14 Score=123.48 Aligned_cols=93 Identities=16% Similarity=0.236 Sum_probs=68.3
Q ss_pred hccCCCCCceeecccceecCCccchhhhhHHHH----hhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccc
Q psy12535 30 FAQLPSGDRTLVGDKGVSLSGGQRARISLARAV----YKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRW 105 (209)
Q Consensus 30 i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal----~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (209)
+..++.+.+. -...+..||+||||++.+|+++ +.+|+++|+||||++||+.....+++.+.
T Consensus 110 l~~~~~~~~~-~~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~-------------- 174 (213)
T cd03277 110 LVKFREGEQL-QELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLV-------------- 174 (213)
T ss_pred heeeecCCCc-cccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHH--------------
Confidence 3444544432 2456779999999998877654 47999999999999999998888876432
Q ss_pred hhhhhcccccccchhhhhhhhccc-c-ceeeeeeeehhee-cccc--eEEEeeccc
Q psy12535 106 GRSFFGSALGVRGALSLVRTSFLK-E-KTVMLITHQIQYL-THVD--HVMLLEKGS 156 (209)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~-~-~TiIvitH~l~~l-~~~D--rV~~L~~G~ 156 (209)
....+ + .|+|++||++... ..+| +|++|.+|+
T Consensus 175 -------------------~~~~~~g~~~viiith~~~~~~~~~~~~~v~~l~~g~ 211 (213)
T cd03277 175 -------------------ETACKEGTSQYFLITPKLLPGLNYHEKMTVLCVYNGP 211 (213)
T ss_pred -------------------HHhhcCCCceEEEEchhhccCCcccCceEEEEEecCc
Confidence 22233 4 4799999988654 4454 888999886
No 381
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.52 E-value=8.8e-15 Score=139.25 Aligned_cols=91 Identities=31% Similarity=0.476 Sum_probs=76.0
Q ss_pred cccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhh
Q psy12535 42 GDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALS 121 (209)
Q Consensus 42 g~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (209)
..+...||||||-|+.||+.++.+|.||||||||+.||..+...+-+.+.
T Consensus 434 ~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~------------------------------ 483 (530)
T COG0488 434 EKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALL------------------------------ 483 (530)
T ss_pred hCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHH------------------------------
Confidence 35567899999999999999999999999999999999988777755331
Q ss_pred hhhhhccccceeeeeeeehheecc-cceEEEeeccceeec-chhhHHhhc
Q psy12535 122 LVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAF-GTTTQLLAS 169 (209)
Q Consensus 122 ~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~-G~~~~l~~~ 169 (209)
. -.-|||+||||..++.. +++|+.+++ ++... |++++....
T Consensus 484 ---~---f~Gtvl~VSHDr~Fl~~va~~i~~~~~-~~~~~~g~y~~y~~~ 526 (530)
T COG0488 484 ---D---FEGTVLLVSHDRYFLDRVATRIWLVED-KVEEFEGGYEDYLEQ 526 (530)
T ss_pred ---h---CCCeEEEEeCCHHHHHhhcceEEEEcC-ceeEcCCCHHHHHHh
Confidence 1 14599999999999986 799999998 66655 888877654
No 382
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.52 E-value=6.5e-15 Score=139.20 Aligned_cols=91 Identities=27% Similarity=0.397 Sum_probs=73.0
Q ss_pred cCCCCCceeecccc------eecCCccchhhhhHHHHh----------hhcceeeccCcc-hhhhhhhhhhhhhhhhhcc
Q psy12535 32 QLPSGDRTLVGDKG------VSLSGGQRARISLARAVY----------KRADVYLLDDPL-SAVDAHVGKHLFEDCITGL 94 (209)
Q Consensus 32 ~lp~g~~t~vg~~g------~~LSgGqrQRlaiARal~----------~~p~illLDEPt-s~LD~~~~~~~~~~~~~~~ 94 (209)
.+|.++++.+++.| .+|||||+||++||+||+ .+|++||||||| ++||+.....+++.
T Consensus 447 ~~~~~~~~~~~~~g~~~~~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~----- 521 (562)
T PHA02562 447 TLDEEFNETIKSRGREDFSYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSI----- 521 (562)
T ss_pred EechhhhhHHhcCCCCccChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHH-----
Confidence 34566666666555 689999999999999987 589999999998 78999887777652
Q ss_pred ccCCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeec-cce
Q psy12535 95 HTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEK-GSV 157 (209)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~-G~i 157 (209)
+... ++.|||+|||+......+|++++|.+ |+.
T Consensus 522 ----------------------------l~~~--~~~~iiiish~~~~~~~~d~~~~l~~~~~~ 555 (562)
T PHA02562 522 ----------------------------LDSL--KDTNVFVISHKDHDPQKFDRHLKMEKVGRF 555 (562)
T ss_pred ----------------------------HHhC--CCCeEEEEECchhchhhhhcEEEEEEECCe
Confidence 2222 47899999999887778999999986 554
No 383
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=2.6e-14 Score=122.99 Aligned_cols=88 Identities=25% Similarity=0.386 Sum_probs=75.6
Q ss_pred ecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhhhhhh
Q psy12535 47 SLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTS 126 (209)
Q Consensus 47 ~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (209)
.+|||+|+|..|+.+++.+|++.|||||-||||..+-+.+.+. +...
T Consensus 144 GFSGGEkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~---------------------------------i~~l 190 (251)
T COG0396 144 GFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEG---------------------------------INAL 190 (251)
T ss_pred CcCcchHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHH---------------------------------HHHH
Confidence 7999999999999999999999999999999999766655442 2333
Q ss_pred ccccceeeeeeeehheeccc--ceEEEeeccceeecchhhHHhh
Q psy12535 127 FLKEKTVMLITHQIQYLTHV--DHVMLLEKGSVEAFGTTTQLLA 168 (209)
Q Consensus 127 ~~~~~TiIvitH~l~~l~~~--DrV~~L~~G~i~~~G~~~~l~~ 168 (209)
..++.++++|||.-..+.+. |+|.+|-+|+|+..|.+ ++..
T Consensus 191 r~~~~~~liITHy~rll~~i~pD~vhvl~~GrIv~sG~~-el~~ 233 (251)
T COG0396 191 REEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSGDP-ELAE 233 (251)
T ss_pred hcCCCeEEEEecHHHHHhhcCCCEEEEEECCEEEecCCH-HHHH
Confidence 45689999999999888875 99999999999999999 5543
No 384
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.47 E-value=5.1e-14 Score=137.69 Aligned_cols=101 Identities=29% Similarity=0.508 Sum_probs=86.8
Q ss_pred ecccceecCCccchhhhhHHHHhhhc---ceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccccc
Q psy12535 41 VGDKGVSLSGGQRARISLARAVYKRA---DVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVR 117 (209)
Q Consensus 41 vg~~g~~LSgGqrQRlaiARal~~~p---~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (209)
+|.....|||||.|||-||.-|.++. -++||||||.||-....+++++
T Consensus 816 LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~----------------------------- 866 (935)
T COG0178 816 LGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLE----------------------------- 866 (935)
T ss_pred cCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHH-----------------------------
Confidence 58999999999999999999999988 8999999999998876666655
Q ss_pred chhhhhhhhccccceeeeeeeehheecccceEEEe------eccceeecchhhHHhhccCCch
Q psy12535 118 GALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLL------EKGSVEAFGTTTQLLASGLDFT 174 (209)
Q Consensus 118 ~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L------~~G~i~~~G~~~~l~~~~~~~~ 174 (209)
.+.++...|.|||+|.|+++.++.||+|+=| ..|+|+++|+|+++.+....|+
T Consensus 867 ----VL~rLvd~GnTViVIEHNLdVIk~AD~IIDLGPeGG~~GG~iva~GTPeeva~~~~S~T 925 (935)
T COG0178 867 ----VLHRLVDKGNTVIVIEHNLDVIKTADWIIDLGPEGGDGGGEIVASGTPEEVAKVKASYT 925 (935)
T ss_pred ----HHHHHHhCCCEEEEEecccceEeecCEEEEcCCCCCCCCceEEEecCHHHHHhCccchh
Confidence 2333345799999999999999999999988 5789999999999987554443
No 385
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.47 E-value=2.6e-14 Score=117.11 Aligned_cols=90 Identities=28% Similarity=0.435 Sum_probs=69.5
Q ss_pred eeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCC
Q psy12535 20 VVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVP 99 (209)
Q Consensus 20 ~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~ 99 (209)
+++..++..++.+.| .+||||||.||++-|+|+..|+.++||||+|.||...+.+..+.++.++
T Consensus 118 AL~~~gL~g~f~~dP-----------~tlSGGQrARvaL~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~----- 181 (213)
T COG4136 118 ALERSGLDGAFHQDP-----------ATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEV----- 181 (213)
T ss_pred HHHHhccchhhhcCh-----------hhcCcchHHHHHHHHHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHH-----
Confidence 344445555555555 4999999999999999999999999999999999987777666443321
Q ss_pred CccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEe
Q psy12535 100 RFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLL 152 (209)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L 152 (209)
...|..+|+||||.+.+....||+-|
T Consensus 182 ---------------------------r~agiPtv~VTHD~~DvpagsrVie~ 207 (213)
T COG4136 182 ---------------------------RAAGIPTVQVTHDLQDVPAGSRVIEM 207 (213)
T ss_pred ---------------------------HhcCCCeEEEecccccCCCCCeeeee
Confidence 22477899999999998865677655
No 386
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.47 E-value=3.4e-14 Score=124.36 Aligned_cols=78 Identities=22% Similarity=0.258 Sum_probs=64.5
Q ss_pred eecCCccchhhhhHHHHhh----hcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhh
Q psy12535 46 VSLSGGQRARISLARAVYK----RADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALS 121 (209)
Q Consensus 46 ~~LSgGqrQRlaiARal~~----~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (209)
..|||||+||++||++++. +|+++|||||+++||+.....+.+.+
T Consensus 169 ~~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l------------------------------- 217 (276)
T cd03241 169 KIASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKL------------------------------- 217 (276)
T ss_pred hhcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHH-------------------------------
Confidence 3599999999999997654 99999999999999999888776632
Q ss_pred hhhhhccccceeeeeeeehheecccceEEEeeccce
Q psy12535 122 LVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSV 157 (209)
Q Consensus 122 ~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i 157 (209)
... .++.|+|+|||++.....+|++++|.+|..
T Consensus 218 --~~~-~~~~tii~isH~~~~~~~~d~~~~l~~~~~ 250 (276)
T cd03241 218 --KEL-SRSHQVLCITHLPQVAAMADNHFLVEKEVE 250 (276)
T ss_pred --HHH-hCCCEEEEEechHHHHHhcCcEEEEEEecC
Confidence 222 236799999999997777899999988743
No 387
>KOG0062|consensus
Probab=99.46 E-value=2e-14 Score=134.83 Aligned_cols=105 Identities=23% Similarity=0.378 Sum_probs=80.7
Q ss_pred CCCCCcceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhh
Q psy12535 13 PDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCIT 92 (209)
Q Consensus 13 ~~~~~~~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~ 92 (209)
+++.+++.+...|+...+...+ ..+||||||-||++|.+...+|.+|||||||+.||..+-..+-..+
T Consensus 458 ~~ee~r~hl~~~Gl~g~la~~s----------i~~LSGGQKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al-- 525 (582)
T KOG0062|consen 458 TEEEIRRHLGSFGLSGELALQS----------IASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKAL-- 525 (582)
T ss_pred CHHHHHHHHHhcCCCchhhhcc----------ccccCCcchhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHH--
Confidence 4555555555555555444332 3589999999999999999999999999999999998766654422
Q ss_pred ccccCCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecc-cceEEEeeccceee-cchh
Q psy12535 93 GLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGSVEA-FGTT 163 (209)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~-~G~~ 163 (209)
..-+-.||+|||+.+++.. |+.+++.++|+|.. +|+.
T Consensus 526 ----------------------------------~~F~GGVv~VSHd~~fi~~~c~E~Wvve~g~vt~ieg~~ 564 (582)
T KOG0062|consen 526 ----------------------------------KNFNGGVVLVSHDEEFISSLCKELWVVEDGKVTPIEGGI 564 (582)
T ss_pred ----------------------------------HhcCCcEEEEECcHHHHhhcCceeEEEcCCcEEeeeccH
Confidence 1235589999999999986 89999999999975 3444
No 388
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.43 E-value=7.8e-14 Score=112.95 Aligned_cols=75 Identities=27% Similarity=0.405 Sum_probs=63.5
Q ss_pred ecCCccchhhhhHHHHhh----hcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhh
Q psy12535 47 SLSGGQRARISLARAVYK----RADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSL 122 (209)
Q Consensus 47 ~LSgGqrQRlaiARal~~----~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (209)
+||+||+||++||++|.. +|+++|||||++++|+.....+.+.+.
T Consensus 77 ~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~------------------------------- 125 (162)
T cd03227 77 QLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAIL------------------------------- 125 (162)
T ss_pred eccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHH-------------------------------
Confidence 599999999999999997 789999999999999988777766332
Q ss_pred hhhhccccceeeeeeeehheecccceEEEeec
Q psy12535 123 VRTSFLKEKTVMLITHQIQYLTHVDHVMLLEK 154 (209)
Q Consensus 123 ~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~ 154 (209)
+...++.++|++||+.+....+|+++.|..
T Consensus 126 --~~~~~~~~vii~TH~~~~~~~~d~~~~l~~ 155 (162)
T cd03227 126 --EHLVKGAQVIVITHLPELAELADKLIHIKK 155 (162)
T ss_pred --HHHhcCCEEEEEcCCHHHHHhhhhEEEEEE
Confidence 212236799999999999888999999964
No 389
>KOG0927|consensus
Probab=99.43 E-value=7.5e-14 Score=131.69 Aligned_cols=93 Identities=26% Similarity=0.443 Sum_probs=76.0
Q ss_pred ecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchh
Q psy12535 41 VGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGAL 120 (209)
Q Consensus 41 vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (209)
......+||||++.|++|||+|..+|++|||||||++||..+..-+-+ .
T Consensus 215 ~~k~~~~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee-~------------------------------ 263 (614)
T KOG0927|consen 215 QDKKVKDLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEE-Y------------------------------ 263 (614)
T ss_pred HHHHhhccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHH-H------------------------------
Confidence 345567999999999999999999999999999999999976544433 1
Q ss_pred hhhhhhccccc-eeeeeeeehheecc-cceEEEeeccc-eeecchhhHHhhc
Q psy12535 121 SLVRTSFLKEK-TVMLITHQIQYLTH-VDHVMLLEKGS-VEAFGTTTQLLAS 169 (209)
Q Consensus 121 ~~~~~~~~~~~-TiIvitH~l~~l~~-~DrV~~L~~G~-i~~~G~~~~l~~~ 169 (209)
+.+ -+. ++|+++|.-+++.. |.+|+.|++++ +.+.|+++++...
T Consensus 264 --L~k---~d~~~lVi~sh~QDfln~vCT~Ii~l~~kkl~~y~Gnydqy~~t 310 (614)
T KOG0927|consen 264 --LAK---YDRIILVIVSHSQDFLNGVCTNIIHLDNKKLIYYEGNYDQYVKT 310 (614)
T ss_pred --HHh---ccCceEEEEecchhhhhhHhhhhheecccceeeecCCHHHHhhH
Confidence 111 234 89999999999975 89999999999 6778999888643
No 390
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=99.41 E-value=1.1e-13 Score=132.33 Aligned_cols=77 Identities=22% Similarity=0.278 Sum_probs=65.6
Q ss_pred eecCCccchhhhhHHHHhhh----cceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhh
Q psy12535 46 VSLSGGQRARISLARAVYKR----ADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALS 121 (209)
Q Consensus 46 ~~LSgGqrQRlaiARal~~~----p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (209)
..|||||+||++||++++.. |++||||||++|||+.+...+.+.
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~-------------------------------- 486 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKK-------------------------------- 486 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHH--------------------------------
Confidence 47899999999999999985 699999999999999888777663
Q ss_pred hhhhhccccceeeeeeeehheecccceEEEeeccc
Q psy12535 122 LVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGS 156 (209)
Q Consensus 122 ~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~ 156 (209)
+.... +++|||+|||++..+..+|++++|++|.
T Consensus 487 -l~~l~-~~~~vi~iTH~~~~~~~ad~~~~l~k~~ 519 (563)
T TIGR00634 487 -LAQLS-ERHQVLCVTHLPQVAAHADAHFKVEKEG 519 (563)
T ss_pred -HHHHh-cCCEEEEEEChHHHHHhcCeEEEEEEcc
Confidence 22222 4789999999999888899999999875
No 391
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.38 E-value=1.9e-13 Score=113.86 Aligned_cols=77 Identities=23% Similarity=0.391 Sum_probs=66.6
Q ss_pred cceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhhh
Q psy12535 44 KGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLV 123 (209)
Q Consensus 44 ~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (209)
.+..+|||+||||.|||.++.+-+||+|||||++||..+...+.+ ++
T Consensus 149 aPaTFSGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVve---------------------------------li 195 (235)
T COG4778 149 APATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVE---------------------------------LI 195 (235)
T ss_pred CCcccCCchheehhhhhhhhccCceEEecCCcccccccchHHHHH---------------------------------HH
Confidence 356999999999999999999999999999999999998887766 45
Q ss_pred hhhccccceeeeeeeehheecc-cceEEEee
Q psy12535 124 RTSFLKEKTVMLITHQIQYLTH-VDHVMLLE 153 (209)
Q Consensus 124 ~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~ 153 (209)
.+.+.+|..+|=|-||.+.-+. +||++-|.
T Consensus 196 ~e~Ka~GaAlvGIFHDeevre~vadR~~~~~ 226 (235)
T COG4778 196 REAKARGAALVGIFHDEEVREAVADRLLDVS 226 (235)
T ss_pred HHHHhcCceEEEeeccHHHHHHHhhheeecc
Confidence 5556679999999999887655 79988775
No 392
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.37 E-value=3.1e-13 Score=140.02 Aligned_cols=96 Identities=18% Similarity=0.280 Sum_probs=76.0
Q ss_pred ceeeeeechhhhccCCCCCceeecccceecCCccch------hhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhh
Q psy12535 19 RVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRA------RISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCIT 92 (209)
Q Consensus 19 ~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQ------RlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~ 92 (209)
.+++.++..+++..+|.| +|.++..+ .|||||+| |++||||++.+|+||||||||++||+.+...+...+..
T Consensus 1173 ~~~~~~~~~~~~~~~~~~-~~~~~~~~-~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~ 1250 (1311)
T TIGR00606 1173 SASDKRRNYNYRVVMLKG-DTALDMRG-RCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVE 1250 (1311)
T ss_pred HHHHHcCchHHHhccCCC-CeecCCCC-CCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHH
Confidence 445556777889999999 89888775 89999999 99999999999999999999999999888777653321
Q ss_pred ccccCCCCccccchhhhhcccccccchhhhhhhh-ccccceeeeeeeehheecc
Q psy12535 93 GLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTS-FLKEKTVMLITHQIQYLTH 145 (209)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~TiIvitH~l~~l~~ 145 (209)
++... ...+.|||+|||++.++..
T Consensus 1251 -----------------------------~~~~~~~~~~~~viiitHd~~~~~~ 1275 (1311)
T TIGR00606 1251 -----------------------------IIKSRSQQRNFQLLVITHDEDFVEL 1275 (1311)
T ss_pred -----------------------------HHHhhhhccCCeEEEEecCHHHHHH
Confidence 11110 1237899999999998653
No 393
>KOG0062|consensus
Probab=99.37 E-value=1e-13 Score=130.18 Aligned_cols=89 Identities=30% Similarity=0.503 Sum_probs=72.0
Q ss_pred ceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhhhh
Q psy12535 45 GVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVR 124 (209)
Q Consensus 45 g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (209)
..+||||-|=|++|||||..+||||||||||+.||..+..-+ +..+ .
T Consensus 196 t~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~av~WL-e~yL--------------------------------~ 242 (582)
T KOG0062|consen 196 TKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVAVAWL-ENYL--------------------------------Q 242 (582)
T ss_pred ccccCcchhhHHHHHHHHhcCCCEEeecCCcccchhHHHHHH-HHHH--------------------------------h
Confidence 469999999999999999999999999999999999754333 3221 1
Q ss_pred hhccccceeeeeeeehheecc-cceEEEeeccce-eecchhhHHhhc
Q psy12535 125 TSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGSV-EAFGTTTQLLAS 169 (209)
Q Consensus 125 ~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i-~~~G~~~~l~~~ 169 (209)
+ ...|+|+||||-.++.. |..|+.+++=++ .+.|++++..+.
T Consensus 243 t---~~~T~liVSHDr~FLn~V~tdIIH~~~~kL~~YkGN~~~Fvk~ 286 (582)
T KOG0062|consen 243 T---WKITSLIVSHDRNFLNTVCTDIIHLENLKLDYYKGNYSQFVKT 286 (582)
T ss_pred h---CCceEEEEeccHHHHHHHHHHHHHHhhhhhhhhcCcHHHHHHh
Confidence 1 24799999999999986 799999988777 456888877653
No 394
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.37 E-value=1.2e-13 Score=115.30 Aligned_cols=88 Identities=16% Similarity=0.070 Sum_probs=71.1
Q ss_pred eecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccch
Q psy12535 40 LVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGA 119 (209)
Q Consensus 40 ~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (209)
.+.+..+.+|+||+|++.|++++ .+|+++|+|||++++|+.....+...++.
T Consensus 84 ~l~~~~s~fs~g~~~~~~i~~~~-~~p~llllDEp~~glD~~~~~~i~~~~l~--------------------------- 135 (200)
T cd03280 84 SIEQSLSTFSSHMKNIARILQHA-DPDSLVLLDELGSGTDPVEGAALAIAILE--------------------------- 135 (200)
T ss_pred hhhcCcchHHHHHHHHHHHHHhC-CCCcEEEEcCCCCCCCHHHHHHHHHHHHH---------------------------
Confidence 34556679999999999999885 79999999999999999887777543322
Q ss_pred hhhhhhhccccceeeeeeeehheecccceEEEeeccceeec
Q psy12535 120 LSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAF 160 (209)
Q Consensus 120 ~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~ 160 (209)
.....+.|+|++||+.+....+|++++|++|++...
T Consensus 136 -----~l~~~~~~vi~~tH~~~l~~~~d~~~~l~~g~l~~~ 171 (200)
T cd03280 136 -----ELLERGALVIATTHYGELKAYAYKREGVENASMEFD 171 (200)
T ss_pred -----HHHhcCCEEEEECCHHHHHHHHhcCCCeEEEEEEEe
Confidence 222347899999998766677899999999999765
No 395
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.35 E-value=1.6e-13 Score=131.65 Aligned_cols=102 Identities=22% Similarity=0.299 Sum_probs=81.3
Q ss_pred CCCCCCcceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhh
Q psy12535 12 HPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCI 91 (209)
Q Consensus 12 ~~~~~~~~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~ 91 (209)
.+++.+.+++..|+|.+.++++.. .+. =-..||+||||||++||.++++|++++|||.||+||+.++..+++.+.
T Consensus 485 ~~d~~l~~vL~~vgL~~L~~rl~~-~~~----W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~ 559 (604)
T COG4178 485 FSDAELVAVLHKVGLGDLAERLDE-EDR----WDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLK 559 (604)
T ss_pred CChHHHHHHHHHcCcHHHHHHHhc-cCc----HhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHH
Confidence 566777888999999888777643 111 123799999999999999999999999999999999999988887543
Q ss_pred hccccCCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEe
Q psy12535 92 TGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLL 152 (209)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L 152 (209)
. ...+.|||-|.|+.......++.+-+
T Consensus 560 ~----------------------------------~lp~~tvISV~Hr~tl~~~h~~~l~l 586 (604)
T COG4178 560 E----------------------------------ELPDATVISVGHRPTLWNFHSRQLEL 586 (604)
T ss_pred h----------------------------------hCCCCEEEEeccchhhHHHHhhheee
Confidence 2 22688999999998877766655544
No 396
>KOG0065|consensus
Probab=99.34 E-value=7.1e-14 Score=142.10 Aligned_cols=96 Identities=25% Similarity=0.423 Sum_probs=82.5
Q ss_pred CceeecccceecCCccchhhhhHHHHhhhc-ceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535 37 DRTLVGDKGVSLSGGQRARISLARAVYKRA-DVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG 115 (209)
Q Consensus 37 ~~t~vg~~g~~LSgGqrQRlaiARal~~~p-~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (209)
-+.+||..|..||..||+||.||--|+.+| .||+|||||||||..++-.+++
T Consensus 919 ~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~--------------------------- 971 (1391)
T KOG0065|consen 919 ADALVGLPGSGLSTEQRKRLTIGVELVANPSSILFLDEPTSGLDSQAAAIVMR--------------------------- 971 (1391)
T ss_pred hhhhccCCCCCCCHHHhceeeEEEEEecCCceeEEecCCCCCccHHHHHHHHH---------------------------
Confidence 467889999999999999999999999999 7888999999999998877765
Q ss_pred ccchhhhhhhhccccceeeeeeeehhe--ecccceEEEee-ccceeecchhhH
Q psy12535 116 VRGALSLVRTSFLKEKTVMLITHQIQY--LTHVDHVMLLE-KGSVEAFGTTTQ 165 (209)
Q Consensus 116 ~~~~~~~~~~~~~~~~TiIvitH~l~~--l~~~DrV~~L~-~G~i~~~G~~~~ 165 (209)
++++....|+|||++-|+++. ++.+|++++|+ .|+.+..|+..+
T Consensus 972 ------~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~ 1018 (1391)
T KOG0065|consen 972 ------FLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGE 1018 (1391)
T ss_pred ------HHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCccc
Confidence 455556679999999999985 56789999997 579999987643
No 397
>PRK10869 recombination and repair protein; Provisional
Probab=99.33 E-value=7.8e-13 Score=126.59 Aligned_cols=76 Identities=21% Similarity=0.222 Sum_probs=64.3
Q ss_pred ecCCccchhhhhHHHHhh----hcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhh
Q psy12535 47 SLSGGQRARISLARAVYK----RADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSL 122 (209)
Q Consensus 47 ~LSgGqrQRlaiARal~~----~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (209)
.|||||+|||+||++++. +|+++|||||++|||..+...+.+.
T Consensus 430 ~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~--------------------------------- 476 (553)
T PRK10869 430 VASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKL--------------------------------- 476 (553)
T ss_pred hCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHH---------------------------------
Confidence 579999999999999997 5899999999999999888777663
Q ss_pred hhhhccccceeeeeeeehheecccceEEEeeccc
Q psy12535 123 VRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGS 156 (209)
Q Consensus 123 ~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~ 156 (209)
++.. .++.|||+|||++..+..+|+++++.++.
T Consensus 477 l~~l-~~~~qvi~iTH~~~~~~~ad~~~~v~k~~ 509 (553)
T PRK10869 477 LRQL-GESTQVMCVTHLPQVAGCGHQHFFVSKET 509 (553)
T ss_pred HHHH-hcCCEEEEEecCHHHHHhCCEEEEEeccc
Confidence 2222 24689999999999888899999998753
No 398
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.32 E-value=1.3e-13 Score=115.42 Aligned_cols=101 Identities=23% Similarity=0.431 Sum_probs=81.5
Q ss_pred CCceeecccceecCCccchhhhhHHHHhh-----hc--ceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhh
Q psy12535 36 GDRTLVGDKGVSLSGGQRARISLARAVYK-----RA--DVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRS 108 (209)
Q Consensus 36 g~~t~vg~~g~~LSgGqrQRlaiARal~~-----~p--~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (209)
+++..+++...+||||+.|||-+|-.++. || ++||+|||.++||...+.. .+.++.
T Consensus 114 ~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~a-Ldrll~---------------- 176 (248)
T COG4138 114 ALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSA-LDRLLS---------------- 176 (248)
T ss_pred cccchhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHHHHH-HHHHHH----------------
Confidence 45566778888999999999999987662 33 6999999999999964443 343332
Q ss_pred hhcccccccchhhhhhhhccccceeeeeeeehhe-ecccceEEEeeccceeecchhhHHhhc
Q psy12535 109 FFGSALGVRGALSLVRTSFLKEKTVMLITHQIQY-LTHVDHVMLLEKGSVEAFGTTTQLLAS 169 (209)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~-l~~~DrV~~L~~G~i~~~G~~~~l~~~ 169 (209)
.....|.||||.+||++. ++.+|++.+|+.|++...|..+|++..
T Consensus 177 ----------------~~c~~G~~vims~HDLNhTLrhA~~~wLL~rG~l~~~G~~~eVlt~ 222 (248)
T COG4138 177 ----------------ALCQQGLAIVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREEVLTP 222 (248)
T ss_pred ----------------HHHhCCcEEEEeccchhhHHHHHHHHHHHhcCeEEeecchhhhcCh
Confidence 224468999999999985 788999999999999999999998754
No 399
>KOG0927|consensus
Probab=99.32 E-value=2.2e-13 Score=128.55 Aligned_cols=105 Identities=26% Similarity=0.364 Sum_probs=81.1
Q ss_pred CcceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhcccc
Q psy12535 17 SRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHT 96 (209)
Q Consensus 17 ~~~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~ 96 (209)
++.++..|++..+.+..|- .+||+|||.||.+||.++.+|.+|||||||++||..+...+-+.+
T Consensus 489 ~r~ilgrfgLtgd~q~~p~----------~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeai------ 552 (614)
T KOG0927|consen 489 MRSILGRFGLTGDAQVVPM----------SQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAI------ 552 (614)
T ss_pred HHHHHHHhCCCccccccch----------hhcccccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHH------
Confidence 3445556666655555553 589999999999999999999999999999999998766554421
Q ss_pred CCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecc-cceEEEeecccee-ecchhhHHh
Q psy12535 97 GVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGSVE-AFGTTTQLL 167 (209)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~-~~G~~~~l~ 167 (209)
....-++|+||||...+.. +++|.+.++|.+. ..|......
T Consensus 553 ------------------------------Ne~~Ggvv~vSHDfrlI~qVaeEi~~c~~~~~~~~~G~i~~yk 595 (614)
T KOG0927|consen 553 ------------------------------NEFPGGVVLVSHDFRLISQVAEEIWVCENGTVTKWDGDIEIYK 595 (614)
T ss_pred ------------------------------hccCCceeeeechhhHHHHHHHHhHhhccCceeecCccHHHHH
Confidence 2235699999999999987 6999999988774 556665543
No 400
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.32 E-value=1.1e-12 Score=122.31 Aligned_cols=87 Identities=29% Similarity=0.467 Sum_probs=71.1
Q ss_pred CCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccc
Q psy12535 34 PSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSA 113 (209)
Q Consensus 34 p~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (209)
|..++.++.....+||||+.|||+||.||.+++||+|||||++.||.+.+-.+-. +
T Consensus 442 pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~vak-v----------------------- 497 (591)
T COG1245 442 PLNLEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAK-V----------------------- 497 (591)
T ss_pred ccchHHHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHHHH-H-----------------------
Confidence 5667777888889999999999999999999999999999999999964433322 2
Q ss_pred ccccchhhhhhhhc-cccceeeeeeeehheecc-cceEEEee
Q psy12535 114 LGVRGALSLVRTSF-LKEKTVMLITHQIQYLTH-VDHVMLLE 153 (209)
Q Consensus 114 ~~~~~~~~~~~~~~-~~~~TiIvitH~l~~l~~-~DrV~~L~ 153 (209)
+++.. ..++|.++|-||+-++.. +||+++..
T Consensus 498 ---------IRR~~e~~~kta~vVdHDi~~~dyvsDr~ivF~ 530 (591)
T COG1245 498 ---------IRRFIENNEKTALVVDHDIYMIDYVSDRLIVFE 530 (591)
T ss_pred ---------HHHHHhhcCceEEEEecceehhhhhhceEEEEe
Confidence 22222 357899999999999987 69999995
No 401
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.32 E-value=1.1e-12 Score=133.12 Aligned_cols=80 Identities=16% Similarity=0.203 Sum_probs=66.9
Q ss_pred ccceecCCccchhhhhHHHHhh----------hcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcc
Q psy12535 43 DKGVSLSGGQRARISLARAVYK----------RADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGS 112 (209)
Q Consensus 43 ~~g~~LSgGqrQRlaiARal~~----------~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (209)
....+|||||++||+||+||+. +|++|||||||++||+.+...+++.+
T Consensus 946 r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l---------------------- 1003 (1042)
T TIGR00618 946 RPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGIL---------------------- 1003 (1042)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHH----------------------
Confidence 4557999999999999999986 79999999999999999888776632
Q ss_pred cccccchhhhhhhhccccceeeeeeeehheecc-cceEEEeecc
Q psy12535 113 ALGVRGALSLVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKG 155 (209)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G 155 (209)
......|++|+||||+++.... +|+|+|++.|
T Consensus 1004 -----------~~l~~~g~~i~iisH~~~~~~~~~~~i~v~~~~ 1036 (1042)
T TIGR00618 1004 -----------DAIREGSKMIGIISHVPEFRERIPHRILVKKTN 1036 (1042)
T ss_pred -----------HHHHhCCCEEEEEeCcHHHHHhhCCEEEEEECC
Confidence 2223358899999999998765 6999999754
No 402
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.30 E-value=1.3e-12 Score=121.72 Aligned_cols=85 Identities=28% Similarity=0.437 Sum_probs=71.4
Q ss_pred CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535 36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG 115 (209)
Q Consensus 36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (209)
+++..+++...+||||+-||+|||.|+.++++++++|||+|-||...+-.+..
T Consensus 202 ~L~nvl~r~v~~LSGGELQr~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~ar--------------------------- 254 (591)
T COG1245 202 GLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAAR--------------------------- 254 (591)
T ss_pred cchhhhhhhhhhcCchHHHHHHHHHHHhccCCEEEEcCCcccccHHHHHHHHH---------------------------
Confidence 56777888899999999999999999999999999999999999964443322
Q ss_pred ccchhhhhhhhccccceeeeeeeehheecc-cceEEEee
Q psy12535 116 VRGALSLVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLE 153 (209)
Q Consensus 116 ~~~~~~~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~ 153 (209)
.++.+...+++||+|.||+..+.. +|-|.++-
T Consensus 255 ------~Irel~~~~k~ViVVEHDLavLD~lsD~vhI~Y 287 (591)
T COG1245 255 ------VIRELAEDGKYVIVVEHDLAVLDYLSDFVHILY 287 (591)
T ss_pred ------HHHHHhccCCeEEEEechHHHHHHhhheeEEEe
Confidence 444555558999999999999986 68888874
No 403
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.29 E-value=1.5e-12 Score=121.69 Aligned_cols=89 Identities=21% Similarity=0.366 Sum_probs=78.2
Q ss_pred cceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhhh
Q psy12535 44 KGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLV 123 (209)
Q Consensus 44 ~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (209)
+..+||||++||+-+||-|..+|++||+.+||.|||.-....+.+.++.
T Consensus 400 ~a~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e------------------------------- 448 (501)
T COG3845 400 PARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLE------------------------------- 448 (501)
T ss_pred chhhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHH-------------------------------
Confidence 4578999999999999999999999999999999999988888775543
Q ss_pred hhhccccceeeeeeeehhee-cccceEEEeeccceeecchhhH
Q psy12535 124 RTSFLKEKTVMLITHQIQYL-THVDHVMLLEKGSVEAFGTTTQ 165 (209)
Q Consensus 124 ~~~~~~~~TiIvitH~l~~l-~~~DrV~~L~~G~i~~~G~~~~ 165 (209)
....|+.|++||-+++.+ ..||||++|.+|+++...++++
T Consensus 449 --~r~~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~~~~~~~~ 489 (501)
T COG3845 449 --LRDAGKAVLLISEDLDEILELSDRIAVIYEGRIVGIVPPEE 489 (501)
T ss_pred --HHhcCCEEEEEehhHHHHHHhhheeeeeeCCceeccccccc
Confidence 245799999999999986 4689999999999998877765
No 404
>PRK03918 chromosome segregation protein; Provisional
Probab=99.29 E-value=1.6e-12 Score=128.88 Aligned_cols=78 Identities=22% Similarity=0.318 Sum_probs=62.2
Q ss_pred cceecCCccch------hhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccccc
Q psy12535 44 KGVSLSGGQRA------RISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVR 117 (209)
Q Consensus 44 ~g~~LSgGqrQ------RlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (209)
.+..|||||+| |++||++++.+|+++||||||++||+.....+.+.+
T Consensus 785 ~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l--------------------------- 837 (880)
T PRK03918 785 PLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIM--------------------------- 837 (880)
T ss_pred ChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHH---------------------------
Confidence 34689999999 555666888999999999999999998887776632
Q ss_pred chhhhhhhhccccceeeeeeeehheecccceEEEeec
Q psy12535 118 GALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEK 154 (209)
Q Consensus 118 ~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~ 154 (209)
......+.|||+|||+.+....||+|++|..
T Consensus 838 ------~~~~~~~~~iiiith~~~~~~~~d~~~~l~~ 868 (880)
T PRK03918 838 ------ERYLRKIPQVIIVSHDEELKDAADYVIRVSL 868 (880)
T ss_pred ------HHHHhcCCEEEEEECCHHHHHhCCeEEEEEe
Confidence 1212235699999999987777999999973
No 405
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.28 E-value=1.9e-12 Score=111.27 Aligned_cols=93 Identities=17% Similarity=0.326 Sum_probs=80.8
Q ss_pred eecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhhhhh
Q psy12535 46 VSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRT 125 (209)
Q Consensus 46 ~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (209)
.+|.-|+=|+|.||.|++++|++||.||||+++++.++.++|..+...
T Consensus 157 ~ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~m-------------------------------- 204 (330)
T COG4170 157 YELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRL-------------------------------- 204 (330)
T ss_pred chhccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHh--------------------------------
Confidence 489999999999999999999999999999999999999988743211
Q ss_pred hccccceeeeeeeehheecc-cceEEEeeccceeecchhhHHhhcc
Q psy12535 126 SFLKEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQLLASG 170 (209)
Q Consensus 126 ~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l~~~~ 170 (209)
....+.||++++||+..+.. ||+|-||.-|+-++.++.+++.+..
T Consensus 205 NQn~~TtILL~s~Dl~~is~W~d~i~VlYCGQ~~ESa~~e~l~~~P 250 (330)
T COG4170 205 NQNSNTTILLISHDLQMISQWADKINVLYCGQTVESAPSEELVTMP 250 (330)
T ss_pred hccCCceEEEEcccHHHHHHHhhheEEEEecccccccchhHHhcCC
Confidence 02357899999999999864 8999999999999999999998754
No 406
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.28 E-value=4.1e-12 Score=124.55 Aligned_cols=111 Identities=26% Similarity=0.369 Sum_probs=90.8
Q ss_pred hhccCCCCCceeecccceecCCccchhhhhHHHHhhhc--ceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccch
Q psy12535 29 DFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRA--DVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWG 106 (209)
Q Consensus 29 ~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p--~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (209)
|+.....+|-|+ .+....|||||.||+-||.-+-+.= =++|||||+.||-+.....+.+.
T Consensus 464 fL~~VGL~YLtL-~R~a~TLSGGEaQRIRLAtqiGS~LtGVlYVLDEPSIGLHqrDn~rLi~t----------------- 525 (935)
T COG0178 464 FLVDVGLGYLTL-SRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIET----------------- 525 (935)
T ss_pred HHHHcCcCcccc-cccCCCcChhHHHHHHHHHHhcccceeeEEEecCCccCCChhhHHHHHHH-----------------
Confidence 455555566664 6777899999999999999998763 48899999999998877777653
Q ss_pred hhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEe------eccceeecchhhHHhhccCCc
Q psy12535 107 RSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLL------EKGSVEAFGTTTQLLASGLDF 173 (209)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L------~~G~i~~~G~~~~l~~~~~~~ 173 (209)
++.+...|.|+|+|.||.+.+..||+|+=| ..|+|+++|++++++++....
T Consensus 526 ----------------L~~LRDlGNTviVVEHDedti~~AD~iIDiGPgAG~~GGeIv~~Gtp~~i~~~~~Sl 582 (935)
T COG0178 526 ----------------LKRLRDLGNTVIVVEHDEDTIRAADHIIDIGPGAGEHGGEIVAEGTPEELLANPESL 582 (935)
T ss_pred ----------------HHHHHhcCCeEEEEecCHHHHhhcCEEEeeCCCCCcCCCEEEEccCHHHHHhCCcch
Confidence 333344699999999999999999999987 688999999999999887543
No 407
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=1.1e-11 Score=104.07 Aligned_cols=87 Identities=26% Similarity=0.367 Sum_probs=62.8
Q ss_pred CCCCcceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhc
Q psy12535 14 DPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITG 93 (209)
Q Consensus 14 ~~~~~~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~ 93 (209)
.+.+.+++...+|.. ++++| ..+||-|||+||||||-++..++++|||||+++||.... .++..++..
T Consensus 108 ~~~i~~Al~~vgL~g-~~dlp----------~~~LSAGQqRRvAlArL~ls~~pLWiLDEP~taLDk~g~-a~l~~l~~~ 175 (209)
T COG4133 108 AATIWEALAQVGLAG-LEDLP----------VGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGV-ALLTALMAA 175 (209)
T ss_pred hhhHHHHHHHcCccc-ccccc----------hhhcchhHHHHHHHHHHHcCCCCceeecCcccccCHHHH-HHHHHHHHH
Confidence 344555555555543 23334 359999999999999999999999999999999999644 444443332
Q ss_pred cccCCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheec
Q psy12535 94 LHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLT 144 (209)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~ 144 (209)
....|-.||.+||+.-.+.
T Consensus 176 --------------------------------H~~~GGiVllttHq~l~~~ 194 (209)
T COG4133 176 --------------------------------HAAQGGIVLLTTHQPLPIA 194 (209)
T ss_pred --------------------------------HhcCCCEEEEecCCccCCC
Confidence 2345778999999766554
No 408
>PRK01156 chromosome segregation protein; Provisional
Probab=99.21 E-value=8.3e-12 Score=124.68 Aligned_cols=78 Identities=19% Similarity=0.282 Sum_probs=62.1
Q ss_pred cceecCCccchhhhh------HHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccccc
Q psy12535 44 KGVSLSGGQRARISL------ARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVR 117 (209)
Q Consensus 44 ~g~~LSgGqrQRlai------ARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (209)
.+..|||||++|++| ||+++.+|++++|||||++||+.....+.+.+...
T Consensus 798 ~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~------------------------ 853 (895)
T PRK01156 798 GIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYS------------------------ 853 (895)
T ss_pred ccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHH------------------------
Confidence 456899999999975 59999999999999999999998777765532110
Q ss_pred chhhhhhhhccc-c-ceeeeeeeehheecccceEEEee
Q psy12535 118 GALSLVRTSFLK-E-KTVMLITHQIQYLTHVDHVMLLE 153 (209)
Q Consensus 118 ~~~~~~~~~~~~-~-~TiIvitH~l~~l~~~DrV~~L~ 153 (209)
.... + .|+|+|||+..++..||+|+.+.
T Consensus 854 --------~~~~~~~~~ii~ish~~~~~~~~d~ii~~~ 883 (895)
T PRK01156 854 --------LKDSSDIPQVIMISHHRELLSVADVAYEVK 883 (895)
T ss_pred --------HHhcCCCCeEEEEECchHHHHhcCeEEEEE
Confidence 0111 2 48999999999888899999997
No 409
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.19 E-value=9.5e-12 Score=124.96 Aligned_cols=77 Identities=22% Similarity=0.232 Sum_probs=62.6
Q ss_pred ccceecCCccchhhhhHHHHh----hhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccc
Q psy12535 43 DKGVSLSGGQRARISLARAVY----KRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRG 118 (209)
Q Consensus 43 ~~g~~LSgGqrQRlaiARal~----~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (209)
..+..|||||+||++||++++ .+|+++||||||++||+.+...+...
T Consensus 1085 ~~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~----------------------------- 1135 (1179)
T TIGR02168 1085 QNLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANL----------------------------- 1135 (1179)
T ss_pred ccccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHH-----------------------------
Confidence 456789999999999999985 67799999999999999887777653
Q ss_pred hhhhhhhhccccceeeeeeeehheecccceEEEee
Q psy12535 119 ALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLE 153 (209)
Q Consensus 119 ~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~ 153 (209)
+... .++.++|+|||++..+..||+++.+.
T Consensus 1136 ----~~~~-~~~~~~i~~sh~~~~~~~~d~~~~~~ 1165 (1179)
T TIGR02168 1136 ----LKEF-SKNTQFIVITHNKGTMEVADQLYGVT 1165 (1179)
T ss_pred ----HHHh-ccCCEEEEEEcChhHHHHhhhHeeee
Confidence 2222 23478999999999888899987653
No 410
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.16 E-value=8.3e-12 Score=96.82 Aligned_cols=40 Identities=40% Similarity=0.705 Sum_probs=36.7
Q ss_pred CceeecccceecCCccchhhhhHHHHhhhcceeeccCcch
Q psy12535 37 DRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLS 76 (209)
Q Consensus 37 ~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts 76 (209)
.++.++.++..||+||||||+|||||+.+|++|||||||+
T Consensus 98 ~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 98 LDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp TGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred cccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 4566777789999999999999999999999999999996
No 411
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.13 E-value=4.4e-11 Score=104.41 Aligned_cols=75 Identities=20% Similarity=0.243 Sum_probs=57.0
Q ss_pred eecCCccchhhhhHHHHh---------hhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccc
Q psy12535 46 VSLSGGQRARISLARAVY---------KRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGV 116 (209)
Q Consensus 46 ~~LSgGqrQRlaiARal~---------~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (209)
..||+||+|+++|||+|+ .+|+++||||||++||+.....+++.+
T Consensus 182 ~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l-------------------------- 235 (270)
T cd03242 182 DFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAI-------------------------- 235 (270)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHh--------------------------
Confidence 358999999999999985 799999999999999998887776532
Q ss_pred cchhhhhhhhccccceeeeeeeehhee-ccc---ceEEEeeccce
Q psy12535 117 RGALSLVRTSFLKEKTVMLITHQIQYL-THV---DHVMLLEKGSV 157 (209)
Q Consensus 117 ~~~~~~~~~~~~~~~TiIvitH~l~~l-~~~---DrV~~L~~G~i 157 (209)
... . .+++++|+...+ ..+ ++|+.|++|+|
T Consensus 236 -------~~~---~-q~ii~~~~~~~~~~~~~~~~~i~~l~~g~i 269 (270)
T cd03242 236 -------EGR---V-QTFVTTTDLADFDALWLRRAQIFRVDAGTL 269 (270)
T ss_pred -------hcC---C-CEEEEeCCchhccchhccCccEEEEeCcEE
Confidence 111 2 455555555444 334 78999999986
No 412
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=99.12 E-value=3.7e-11 Score=122.35 Aligned_cols=79 Identities=22% Similarity=0.254 Sum_probs=64.3
Q ss_pred ccceecCCccchhhhhHHHHhh--------hcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccc
Q psy12535 43 DKGVSLSGGQRARISLARAVYK--------RADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSAL 114 (209)
Q Consensus 43 ~~g~~LSgGqrQRlaiARal~~--------~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (209)
..+.+|||||+++++||+||+. +|++|||||||++||+.+...+++.+
T Consensus 945 r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l------------------------ 1000 (1047)
T PRK10246 945 RDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDAL------------------------ 1000 (1047)
T ss_pred CCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHH------------------------
Confidence 4567999999999999999996 89999999999999999888877632
Q ss_pred cccchhhhhhhhccccceeeeeeeehheeccc-ceEEEeec
Q psy12535 115 GVRGALSLVRTSFLKEKTVMLITHQIQYLTHV-DHVMLLEK 154 (209)
Q Consensus 115 ~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~-DrV~~L~~ 154 (209)
......|+||+||||...+.... .+|.|-..
T Consensus 1001 ---------~~l~~~g~~v~iisH~~~l~~~i~~qi~V~k~ 1032 (1047)
T PRK10246 1001 ---------DALNASGKTIGVISHVEAMKERIPVQIKVKKI 1032 (1047)
T ss_pred ---------HHHHHCCCEEEEEecHHHHHHhccceEEEEEC
Confidence 22234589999999977776654 67777764
No 413
>KOG0066|consensus
Probab=99.12 E-value=7.8e-11 Score=109.99 Aligned_cols=88 Identities=25% Similarity=0.382 Sum_probs=67.1
Q ss_pred cceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhhh
Q psy12535 44 KGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLV 123 (209)
Q Consensus 44 ~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (209)
+.+.|||||+.||++|-.-+..|+||||||||++||..+...+-+.+
T Consensus 701 kikdLSGGQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAI--------------------------------- 747 (807)
T KOG0066|consen 701 KIKDLSGGQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAI--------------------------------- 747 (807)
T ss_pred eeeecCCcchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHH---------------------------------
Confidence 45789999999999999999999999999999999998766665532
Q ss_pred hhhccccceeeeeeeehheeccc-ceEEEeeccceee-cchhhHHh
Q psy12535 124 RTSFLKEKTVMLITHQIQYLTHV-DHVMLLEKGSVEA-FGTTTQLL 167 (209)
Q Consensus 124 ~~~~~~~~TiIvitH~l~~l~~~-DrV~~L~~G~i~~-~G~~~~l~ 167 (209)
.. -.-.||||||+-..+... -..+|+++-.|-+ .|.+++..
T Consensus 748 ne---y~GgVi~VsHDeRLi~eT~C~LwVvE~Q~i~eIdGdFeDYk 790 (807)
T KOG0066|consen 748 NE---YNGGVIMVSHDERLIVETDCNLWVVENQGIDEIDGDFEDYK 790 (807)
T ss_pred Hh---ccCcEEEEecccceeeecCceEEEEccCChhhccccHHHHH
Confidence 11 145899999999988764 4556666554533 46665544
No 414
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.06 E-value=7e-11 Score=100.92 Aligned_cols=84 Identities=14% Similarity=0.051 Sum_probs=65.1
Q ss_pred ceecCCccchhhhhHHHH--hhhcceeeccCc---chhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccch
Q psy12535 45 GVSLSGGQRARISLARAV--YKRADVYLLDDP---LSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGA 119 (209)
Q Consensus 45 g~~LSgGqrQRlaiARal--~~~p~illLDEP---ts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (209)
...+|.|++|++.+++++ +.+|+++||||| |+++|+....... +.
T Consensus 87 ~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~~~~~i---l~--------------------------- 136 (222)
T cd03285 87 LKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYDGFGLAWAI---AE--------------------------- 136 (222)
T ss_pred hcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHHHHHHHHHH---HH---------------------------
Confidence 357999999999999999 899999999999 9999986543221 11
Q ss_pred hhhhhhhccccceeeeeeeehheecccceEEEeeccceeecch
Q psy12535 120 LSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGT 162 (209)
Q Consensus 120 ~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~ 162 (209)
.+.+ ..+.++|++||..+....+|++..+++|++...++
T Consensus 137 --~l~~--~~~~~vlisTH~~el~~~~~~~~~i~~g~~~~~~~ 175 (222)
T cd03285 137 --YIAT--QIKCFCLFATHFHELTALADEVPNVKNLHVTALTD 175 (222)
T ss_pred --HHHh--cCCCeEEEEechHHHHHHhhcCCCeEEEEEEEEEe
Confidence 1111 24789999999755556689999999999977654
No 415
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.05 E-value=1.3e-10 Score=117.23 Aligned_cols=77 Identities=13% Similarity=0.157 Sum_probs=63.0
Q ss_pred cceecCCccchhhhhHHHHhh----hcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccch
Q psy12535 44 KGVSLSGGQRARISLARAVYK----RADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGA 119 (209)
Q Consensus 44 ~g~~LSgGqrQRlaiARal~~----~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (209)
.+..||||||++++||++|+. .|+++|||||+++||+.....+...+
T Consensus 1071 ~~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l----------------------------- 1121 (1164)
T TIGR02169 1071 RLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLI----------------------------- 1121 (1164)
T ss_pred cchhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHH-----------------------------
Confidence 456899999999999999985 67999999999999998877776532
Q ss_pred hhhhhhhccccceeeeeeeehheecccceEEEeec
Q psy12535 120 LSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEK 154 (209)
Q Consensus 120 ~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~ 154 (209)
... .++.++|+|||+...+..||+++.+..
T Consensus 1122 ----~~~-~~~~~~i~~t~~~~~~~~~d~~~~~~~ 1151 (1164)
T TIGR02169 1122 ----REK-AGEAQFIVVSLRSPMIEYADRAIGVTM 1151 (1164)
T ss_pred ----HHh-cCCCeEEEEECcHHHHHhcceeEeEEE
Confidence 221 235689999999988888999987753
No 416
>KOG0060|consensus
Probab=99.05 E-value=4.6e-11 Score=113.80 Aligned_cols=106 Identities=23% Similarity=0.295 Sum_probs=85.4
Q ss_pred CCCCCCcceeeeeechhhhccCCCCCceeeccc-ceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhh
Q psy12535 12 HPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDK-GVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDC 90 (209)
Q Consensus 12 ~~~~~~~~~~~~~~l~~~i~~lp~g~~t~vg~~-g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~ 90 (209)
.+++++.+.++.+++.+.+++. .|+++.+.-. ...||+||+||+++||.++++|++-||||.|||+|...+..++..|
T Consensus 535 ~~d~~i~r~Le~v~L~hl~~r~-ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~ 613 (659)
T KOG0060|consen 535 ASDEDILRILENVQLGHLLERE-GGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKC 613 (659)
T ss_pred CCHHHHHHHHHHhhhhhHHHHh-CCCCchhhccHHhhcCHHHHHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHH
Confidence 4556677777777776655554 4677655433 4579999999999999999999999999999999999888887754
Q ss_pred hhccccCCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeec
Q psy12535 91 ITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEK 154 (209)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~ 154 (209)
. ..|.|.|-|+|+-+....-|.++-|+.
T Consensus 614 r------------------------------------~~giT~iSVgHRkSL~kfHd~~L~~~g 641 (659)
T KOG0060|consen 614 R------------------------------------EMGITFISVGHRKSLWKFHDYVLRMDG 641 (659)
T ss_pred H------------------------------------HcCCeEEEeccHHHHHhhhhEEEEecC
Confidence 2 358899999999998888899999964
No 417
>PRK02224 chromosome segregation protein; Provisional
Probab=99.03 E-value=1.6e-10 Score=115.13 Aligned_cols=78 Identities=23% Similarity=0.348 Sum_probs=61.5
Q ss_pred ceecCCccch------hhhhHHHHhhh-----c-ceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcc
Q psy12535 45 GVSLSGGQRA------RISLARAVYKR-----A-DVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGS 112 (209)
Q Consensus 45 g~~LSgGqrQ------RlaiARal~~~-----p-~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (209)
+..||||||+ |++||++++.. | +++||||||++||+.....+...
T Consensus 779 ~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~----------------------- 835 (880)
T PRK02224 779 PEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDL----------------------- 835 (880)
T ss_pred hhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHH-----------------------
Confidence 4689999999 89999999864 2 67999999999999877666542
Q ss_pred cccccchhhhhhhhcccc-ceeeeeeeehheecccceEEEeecc
Q psy12535 113 ALGVRGALSLVRTSFLKE-KTVMLITHQIQYLTHVDHVMLLEKG 155 (209)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~-~TiIvitH~l~~l~~~DrV~~L~~G 155 (209)
+......+ .+||+|||+...+..+|++++|...
T Consensus 836 ----------l~~~~~~~~~qviiish~~~~~~~ad~~~~~~~~ 869 (880)
T PRK02224 836 ----------VESMRRLGVEQIVVVSHDDELVGAADDLVRVEKD 869 (880)
T ss_pred ----------HHHHHhcCCCeEEEEECChHHHHhcCeeEEeecC
Confidence 22222234 4799999999998889999999754
No 418
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.00 E-value=9.7e-11 Score=97.77 Aligned_cols=92 Identities=13% Similarity=0.066 Sum_probs=70.6
Q ss_pred cccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhh
Q psy12535 42 GDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALS 121 (209)
Q Consensus 42 g~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (209)
.+..+.++.+++| +..+.+++.+|+++|||||++++|+.....+...++.
T Consensus 86 ~~~~s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~----------------------------- 135 (202)
T cd03243 86 SDGRSTFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLE----------------------------- 135 (202)
T ss_pred cCCceeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHH-----------------------------
Confidence 3445678877776 6666788899999999999999999877666443222
Q ss_pred hhhhhccccceeeeeeeehheecccceEEEeeccceeecchhhHH
Q psy12535 122 LVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQL 166 (209)
Q Consensus 122 ~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l 166 (209)
.....+.++|++||+.+.+..++++..+++|++...+...++
T Consensus 136 ---~l~~~~~~vi~~tH~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 177 (202)
T cd03243 136 ---HLLEKGCRTLFATHFHELADLPEQVPGVKNLHMEELITTGGL 177 (202)
T ss_pred ---HHHhcCCeEEEECChHHHHHHhhcCCCeEEEEEEEEecCCee
Confidence 122347899999999998888999999999999888765443
No 419
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.98 E-value=1e-10 Score=101.88 Aligned_cols=94 Identities=15% Similarity=0.190 Sum_probs=79.5
Q ss_pred hhhhccCCCCCceeecccceecCCcc--------chhhhhHHHHhhhcceeeccCcchhhhhhhhhh-hhhhhhhccccC
Q psy12535 27 KEDFAQLPSGDRTLVGDKGVSLSGGQ--------RARISLARAVYKRADVYLLDDPLSAVDAHVGKH-LFEDCITGLHTG 97 (209)
Q Consensus 27 ~~~i~~lp~g~~t~vg~~g~~LSgGq--------rQRlaiARal~~~p~illLDEPts~LD~~~~~~-~~~~~~~~~~~~ 97 (209)
-|.+.+++.++++.+++.|..+|||+ +||+++||++.++++|++| ||+.+|..+... +.-
T Consensus 109 iDei~r~a~a~~ev~~~~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l--~T~~~d~~~~~~~~i~--------- 177 (249)
T cd01128 109 LDSITRLARAYNTVVPPSGKILSGGVDANALHKPKRFFGAARNIEEGGSLTII--ATALVDTGSRMDDVIF--------- 177 (249)
T ss_pred EECHHHhhhhhhhccccCCCCCCCCcChhhhhhhHHHHHHhcCCCCCCceEEe--eeheecCCCcccchHH---------
Confidence 35678889999999999999999999 9999999999999999999 999999644432 211
Q ss_pred CCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeeccce
Q psy12535 98 VPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSV 157 (209)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i 157 (209)
......++|.|++||++.....+|.|.+|+.|++
T Consensus 178 --------------------------~~~~~~~~~~ivls~~la~~~~~paI~vl~s~sr 211 (249)
T cd01128 178 --------------------------EEFKGTGNMELVLDRRLAERRIFPAIDILKSGTR 211 (249)
T ss_pred --------------------------HHHhcCCCcEEEEchHHhhCCCCCeEEEcCCCCc
Confidence 1112246899999999999999999999999998
No 420
>KOG0066|consensus
Probab=98.97 E-value=6.3e-11 Score=110.61 Aligned_cols=85 Identities=25% Similarity=0.477 Sum_probs=67.6
Q ss_pred eecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhhhhh
Q psy12535 46 VSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRT 125 (209)
Q Consensus 46 ~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (209)
..+|||-|-||+|||||+..|-+|.|||||+.||.. ...+++..+.
T Consensus 411 ~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLN-AVIWLdNYLQ--------------------------------- 456 (807)
T KOG0066|consen 411 TKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLN-AVIWLDNYLQ--------------------------------- 456 (807)
T ss_pred cccCCceeeehhHHHHHhcCceeeeecCCccccccc-eeeehhhHHh---------------------------------
Confidence 479999999999999999999999999999999984 3333332211
Q ss_pred hccccceeeeeeeehheecc-cceEEEeeccceee-cchhhHH
Q psy12535 126 SFLKEKTVMLITHQIQYLTH-VDHVMLLEKGSVEA-FGTTTQL 166 (209)
Q Consensus 126 ~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~-~G~~~~l 166 (209)
...+|.++|||+..++.. |..|+.|++-++.+ .|++.-+
T Consensus 457 --gWkKTLLIVSHDQgFLD~VCtdIIHLD~qkLhyYrGNY~~F 497 (807)
T KOG0066|consen 457 --GWKKTLLIVSHDQGFLDSVCTDIIHLDNQKLHYYRGNYTLF 497 (807)
T ss_pred --hhhheeEEEecccchHHHHHHHHhhhhhhhhhhhcchHHHH
Confidence 135799999999999986 89999999988854 4665443
No 421
>PRK00064 recF recombination protein F; Reviewed
Probab=98.93 E-value=8.4e-10 Score=100.53 Aligned_cols=76 Identities=25% Similarity=0.288 Sum_probs=61.2
Q ss_pred eecCCccchhhhhHHHHh---------hhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccc
Q psy12535 46 VSLSGGQRARISLARAVY---------KRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGV 116 (209)
Q Consensus 46 ~~LSgGqrQRlaiARal~---------~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (209)
..+|.||+|+++||++|+ .+|+|+|||||+++||+.....+++.+
T Consensus 272 ~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l-------------------------- 325 (361)
T PRK00064 272 DFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERL-------------------------- 325 (361)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHH--------------------------
Confidence 579999999999999986 789999999999999998877776632
Q ss_pred cchhhhhhhhccccceeeeeeeehheecc---cceEEEeeccce
Q psy12535 117 RGALSLVRTSFLKEKTVMLITHQIQYLTH---VDHVMLLEKGSV 157 (209)
Q Consensus 117 ~~~~~~~~~~~~~~~TiIvitH~l~~l~~---~DrV~~L~~G~i 157 (209)
.. -+..++++||+.+.+.. .++++.|++|+|
T Consensus 326 -------~~---~~~qv~it~~~~~~~~~~~~~~~i~~v~~G~i 359 (361)
T PRK00064 326 -------KG---LGAQVFITTTDLEDLADLLENAKIFHVEQGKI 359 (361)
T ss_pred -------hc---cCCEEEEEcCChhhhhhhhccCcEEEEeCCEE
Confidence 11 13478999998776543 358999999987
No 422
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=98.88 E-value=5.3e-10 Score=103.21 Aligned_cols=84 Identities=23% Similarity=0.429 Sum_probs=73.1
Q ss_pred eecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhhhhh
Q psy12535 46 VSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRT 125 (209)
Q Consensus 46 ~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (209)
..||-|||+|+|+--|++-+-||++|||=.+.-||.-++..++.++.. +
T Consensus 447 ~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~-----------------------------L-- 495 (546)
T COG4615 447 LKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPL-----------------------------L-- 495 (546)
T ss_pred cccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHH-----------------------------H--
Confidence 379999999999999999999999999999999998777766654432 2
Q ss_pred hccccceeeeeeeehheecccceEEEeeccceeecc
Q psy12535 126 SFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFG 161 (209)
Q Consensus 126 ~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G 161 (209)
++.||||+.||||-.+...+||++.|++|++++.-
T Consensus 496 -K~qGKTI~aIsHDd~YF~~ADrll~~~~G~~~e~t 530 (546)
T COG4615 496 -KEQGKTIFAISHDDHYFIHADRLLEMRNGQLSELT 530 (546)
T ss_pred -HHhCCeEEEEecCchhhhhHHHHHHHhcCceeecc
Confidence 33599999999999999999999999999998754
No 423
>KOG0065|consensus
Probab=98.82 E-value=1.9e-09 Score=110.45 Aligned_cols=106 Identities=22% Similarity=0.292 Sum_probs=86.3
Q ss_pred hccCCCCCceeeccc-ceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhh
Q psy12535 30 FAQLPSGDRTLVGDK-GVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRS 108 (209)
Q Consensus 30 i~~lp~g~~t~vg~~-g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (209)
+..+....+|.||.. ....|||||+||.+|=+++.+|.++.+||+|.|||..+.-++...+.
T Consensus 242 ilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De~t~GLDSsTal~iik~lr----------------- 304 (1391)
T KOG0065|consen 242 ILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDEITRGLDSSTAFQIIKALR----------------- 304 (1391)
T ss_pred HhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeecccccccHHHHHHHHHHHH-----------------
Confidence 344556789999865 46799999999999999999999999999999999988777655322
Q ss_pred hhcccccccchhhhhhhhc-cccceeeeeeeehhe--ecccceEEEeeccceeecchhhHHhh
Q psy12535 109 FFGSALGVRGALSLVRTSF-LKEKTVMLITHQIQY--LTHVDHVMLLEKGSVEAFGTTTQLLA 168 (209)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~-~~~~TiIvitH~l~~--l~~~DrV~~L~~G~i~~~G~~~~l~~ 168 (209)
+.. .-+.|+++.-++... ...+|.|++|.+|+++.+|+.++++.
T Consensus 305 ----------------~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~ 351 (1391)
T KOG0065|consen 305 ----------------QLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLP 351 (1391)
T ss_pred ----------------HHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHH
Confidence 222 236788888887653 56789999999999999999999875
No 424
>KOG2355|consensus
Probab=98.78 E-value=6.6e-09 Score=89.21 Aligned_cols=90 Identities=21% Similarity=0.299 Sum_probs=73.8
Q ss_pred ceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhhhh
Q psy12535 45 GVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVR 124 (209)
Q Consensus 45 g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (209)
...+|-|||+||.|+..|++.=+||+|||.|-.||...+..+++ +++
T Consensus 145 mHkvSDGqrRRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLe---------------------------------Flk 191 (291)
T KOG2355|consen 145 MHKVSDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLE---------------------------------FLK 191 (291)
T ss_pred EeeccccchhhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHH---------------------------------HHH
Confidence 35789999999999999999999999999999999987766655 222
Q ss_pred hh-ccccceeeeeeeehheecc-cceEEEeeccceeecchhhHHh
Q psy12535 125 TS-FLKEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQLL 167 (209)
Q Consensus 125 ~~-~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l~ 167 (209)
.. -.++.|||+.||-.+-++. ..++++|.+|+++-.-.++.+.
T Consensus 192 eEce~RgatIVYATHIFDGLe~Wpthl~yi~~Gkl~~~l~~~~i~ 236 (291)
T KOG2355|consen 192 EECEQRGATIVYATHIFDGLETWPTHLVYIKSGKLVDNLKYQKIK 236 (291)
T ss_pred HHHhhcCcEEEEEeeeccchhhcchhEEEecCCeeeeccccchhh
Confidence 22 2358999999999998875 6999999999998755544443
No 425
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=98.78 E-value=1.9e-09 Score=89.15 Aligned_cols=82 Identities=10% Similarity=0.014 Sum_probs=55.7
Q ss_pred ecccceecCCccchhhhhHHHHhh--hcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccc
Q psy12535 41 VGDKGVSLSGGQRARISLARAVYK--RADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRG 118 (209)
Q Consensus 41 vg~~g~~LSgGqrQRlaiARal~~--~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (209)
+..+.+.+|+|++| +++++.. +|+++|+|||++++|+.....+...++..
T Consensus 55 ~~~~~s~fs~~~~~---l~~~l~~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~------------------------- 106 (185)
T smart00534 55 LAQGLSTFMVEMKE---TANILKNATENSLVLLDELGRGTSTYDGVAIAAAVLEY------------------------- 106 (185)
T ss_pred hhccccHHHHHHHH---HHHHHHhCCCCeEEEEecCCCCCCHHHHHHHHHHHHHH-------------------------
Confidence 34555688888776 4555555 99999999999999998776665543321
Q ss_pred hhhhhhhhcc-ccceeeeeeeehheecccceEEEeeccce
Q psy12535 119 ALSLVRTSFL-KEKTVMLITHQIQYLTHVDHVMLLEKGSV 157 (209)
Q Consensus 119 ~~~~~~~~~~-~~~TiIvitH~l~~l~~~DrV~~L~~G~i 157 (209)
... .+.++|++||+.+....+++---++++.+
T Consensus 107 -------l~~~~~~~iii~TH~~~l~~~~~~~~~v~~~~~ 139 (185)
T smart00534 107 -------LLEKIGALTLFATHYHELTKLADEHPGVRNLHM 139 (185)
T ss_pred -------HHhcCCCeEEEEecHHHHHHHhhcCccceEEEE
Confidence 122 37799999999976555654333344443
No 426
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.67 E-value=1.6e-08 Score=92.54 Aligned_cols=43 Identities=30% Similarity=0.285 Sum_probs=39.5
Q ss_pred eecCCccchhhhhHHHHhh---------hcceeeccCcchhhhhhhhhhhhh
Q psy12535 46 VSLSGGQRARISLARAVYK---------RADVYLLDDPLSAVDAHVGKHLFE 88 (209)
Q Consensus 46 ~~LSgGqrQRlaiARal~~---------~p~illLDEPts~LD~~~~~~~~~ 88 (209)
..+|.||+++++||.+|+. +|+|||||||+++||+.....+++
T Consensus 274 ~~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~ 325 (365)
T TIGR00611 274 DFASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAE 325 (365)
T ss_pred HhcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHH
Confidence 3689999999999999999 999999999999999988777766
No 427
>PRK14079 recF recombination protein F; Provisional
Probab=98.62 E-value=3.3e-08 Score=89.77 Aligned_cols=77 Identities=17% Similarity=0.161 Sum_probs=57.7
Q ss_pred ecCCccchhhhhHHHHh---------hhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccccc
Q psy12535 47 SLSGGQRARISLARAVY---------KRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVR 117 (209)
Q Consensus 47 ~LSgGqrQRlaiARal~---------~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (209)
-+|+||+++++||..|+ .+|+|+|||||++.||......+.+.+.
T Consensus 263 ~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~-------------------------- 316 (349)
T PRK14079 263 YASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAA-------------------------- 316 (349)
T ss_pred hCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHh--------------------------
Confidence 57999999999999999 8999999999999999987777755221
Q ss_pred chhhhhhhhccccceeeeeeeehheecccceEEEeeccceeecch
Q psy12535 118 GALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGT 162 (209)
Q Consensus 118 ~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~ 162 (209)
. . .-++|| ..+.-..+++++.+++|++.-+.+
T Consensus 317 -------~----~-~q~~it-~t~~~~~~~~~~~~~~~~~~~~~~ 348 (349)
T PRK14079 317 -------S----L-PQAIVA-GTEAPPGAALTLRIEAGVFTPEAP 348 (349)
T ss_pred -------c----C-CcEEEE-cCCCCCCCceEEEEeccEecCCCC
Confidence 1 1 123444 223445689999999998865443
No 428
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=98.58 E-value=3.1e-08 Score=84.24 Aligned_cols=86 Identities=15% Similarity=0.108 Sum_probs=61.1
Q ss_pred eecCCccchhh----hhHHHHh--hhcceeeccCc---chhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccc
Q psy12535 46 VSLSGGQRARI----SLARAVY--KRADVYLLDDP---LSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGV 116 (209)
Q Consensus 46 ~~LSgGqrQRl----aiARal~--~~p~illLDEP---ts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (209)
.++|.|+.+.. .|++++. .+|.++||||| |+++|... +...++.
T Consensus 84 ~~ls~g~s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt~~lD~~~---~~~~il~------------------------ 136 (216)
T cd03284 84 DDLAGGRSTFMVEMVETANILNNATERSLVLLDEIGRGTSTYDGLS---IAWAIVE------------------------ 136 (216)
T ss_pred hhhccCcchHHHHHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHH---HHHHHHH------------------------
Confidence 47889988754 4666665 59999999999 99999853 1111111
Q ss_pred cchhhhhhhhccc-cceeeeeeeehheecccceEEEeeccceeecchhhHH
Q psy12535 117 RGALSLVRTSFLK-EKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQL 166 (209)
Q Consensus 117 ~~~~~~~~~~~~~-~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l 166 (209)
..... +.|+|++||+.+....+|++..+.+|++...+..+++
T Consensus 137 --------~l~~~~~~~vi~~TH~~~l~~l~~~~~~v~~~~~~~~~~~~~l 179 (216)
T cd03284 137 --------YLHEKIGAKTLFATHYHELTELEGKLPRVKNFHVAVKEKGGGV 179 (216)
T ss_pred --------HHHhccCCcEEEEeCcHHHHHHhhcCCCeEEEEEEEEeeCCeE
Confidence 11223 7799999999876667788877888998877666555
No 429
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=98.56 E-value=4.6e-08 Score=82.00 Aligned_cols=72 Identities=24% Similarity=0.345 Sum_probs=51.9
Q ss_pred ecCCccchhhhhHHHHh----hhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhh
Q psy12535 47 SLSGGQRARISLARAVY----KRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSL 122 (209)
Q Consensus 47 ~LSgGqrQRlaiARal~----~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (209)
.||||||.+++||--|+ ..++++|||||.++||......+.+.+
T Consensus 136 ~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l-------------------------------- 183 (220)
T PF02463_consen 136 FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLL-------------------------------- 183 (220)
T ss_dssp GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHH--------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccc--------------------------------
Confidence 79999999999997664 567899999999999999888776633
Q ss_pred hhhhccccceeeeeeeehheecccceEEEe
Q psy12535 123 VRTSFLKEKTVMLITHQIQYLTHVDHVMLL 152 (209)
Q Consensus 123 ~~~~~~~~~TiIvitH~l~~l~~~DrV~~L 152 (209)
... .++.-+|++||+...+..+|+.+.+
T Consensus 184 -~~~-~~~~Q~ii~Th~~~~~~~a~~~~~v 211 (220)
T PF02463_consen 184 -KEL-SKQSQFIITTHNPEMFEDADKLIGV 211 (220)
T ss_dssp -HHH-TTTSEEEEE-S-HHHHTT-SEEEEE
T ss_pred -ccc-ccccccccccccccccccccccccc
Confidence 221 2356799999999999998876655
No 430
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=98.55 E-value=6e-08 Score=97.69 Aligned_cols=80 Identities=24% Similarity=0.323 Sum_probs=63.2
Q ss_pred ccceecCCccchhhhhHHHHh------hh--cceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccc
Q psy12535 43 DKGVSLSGGQRARISLARAVY------KR--ADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSAL 114 (209)
Q Consensus 43 ~~g~~LSgGqrQRlaiARal~------~~--p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (209)
+...+||||++=.++||-+|+ .+ -++++|||||..||+.....+.+.+
T Consensus 811 r~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l------------------------ 866 (908)
T COG0419 811 RPIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEIL------------------------ 866 (908)
T ss_pred cccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHH------------------------
Confidence 456799999998877776654 55 6999999999999998887776632
Q ss_pred cccchhhhhhhhccccceeeeeeeehheecccceEEEeecc
Q psy12535 115 GVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKG 155 (209)
Q Consensus 115 ~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G 155 (209)
......+.+|+||||+.++...+|.++.++..
T Consensus 867 ---------~~i~~~~~qiiIISH~eel~e~~~~~i~V~k~ 898 (908)
T COG0419 867 ---------EELLSDGRQIIIISHVEELKERADVRIRVKKD 898 (908)
T ss_pred ---------HHHHhcCCeEEEEeChHHHHHhCCeEEEEEec
Confidence 22233478999999999999999998888653
No 431
>KOG0064|consensus
Probab=98.49 E-value=4.6e-08 Score=93.09 Aligned_cols=102 Identities=25% Similarity=0.345 Sum_probs=69.8
Q ss_pred CCCCCcceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhh
Q psy12535 13 PDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCIT 92 (209)
Q Consensus 13 ~~~~~~~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~ 92 (209)
.+....+++....|+..++ -..|++..- .=-.-||||+|||+++||.++++|+.-+|||.||++-+..+..+|+..
T Consensus 580 ~d~dL~~iL~~v~L~~i~q-r~~g~da~~-dWkd~LsgGekQR~~mARm~yHrPkyalLDEcTsAvsidvE~~i~~~a-- 655 (728)
T KOG0064|consen 580 TDQDLEAILDIVHLEHILQ-REGGWDAVR-DWKDVLSGGEKQRMGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAA-- 655 (728)
T ss_pred CHHHHHHHHHHhhHHHHHH-hccChhhhc-cHHhhccchHHHHHHHHHHHhcCcchhhhhhhhcccccchHHHHHHHH--
Confidence 3344444555555543222 223333221 111369999999999999999999999999999999888888887742
Q ss_pred ccccCCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEe
Q psy12535 93 GLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLL 152 (209)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L 152 (209)
..-|-+.|-|||+++....-.+.+-.
T Consensus 656 ----------------------------------k~~gi~llsithrpslwk~h~~ll~~ 681 (728)
T KOG0064|consen 656 ----------------------------------KDAGISLLSITHRPSLWKYHTHLLEF 681 (728)
T ss_pred ----------------------------------HhcCceEEEeecCccHHHHHHHHHhc
Confidence 22477999999999887654444433
No 432
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.45 E-value=8.2e-08 Score=81.13 Aligned_cols=72 Identities=13% Similarity=0.063 Sum_probs=53.5
Q ss_pred ecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchh
Q psy12535 41 VGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGAL 120 (209)
Q Consensus 41 vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (209)
+.++.+.+|+|++|+ ..+-+++.+|+++|||||++|+|+.....+...++.
T Consensus 85 ~~~~~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~---------------------------- 135 (204)
T cd03282 85 MERNLSTFASEMSET-AYILDYADGDSLVLIDELGRGTSSADGFAISLAILE---------------------------- 135 (204)
T ss_pred cchhhhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCCHHHHHHHHHHHHH----------------------------
Confidence 445567899999975 555667889999999999999999765555443222
Q ss_pred hhhhhhccccceeeeeeeehheecc
Q psy12535 121 SLVRTSFLKEKTVMLITHQIQYLTH 145 (209)
Q Consensus 121 ~~~~~~~~~~~TiIvitH~l~~l~~ 145 (209)
.....+.++|++||+.+.+..
T Consensus 136 ----~l~~~~~~~i~~TH~~~l~~~ 156 (204)
T cd03282 136 ----CLIKKESTVFFATHFRDIAAI 156 (204)
T ss_pred ----HHHhcCCEEEEECChHHHHHH
Confidence 223347899999999987764
No 433
>KOG0063|consensus
Probab=98.43 E-value=5.2e-08 Score=90.88 Aligned_cols=88 Identities=27% Similarity=0.432 Sum_probs=67.9
Q ss_pred CCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccc
Q psy12535 34 PSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSA 113 (209)
Q Consensus 34 p~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (209)
|...+..++....+||||+.||++||.+|-+.+++++.|||.+-||.+.+... ..+
T Consensus 443 pL~ie~i~dqevq~lSggelQRval~KOGGKpAdvYliDEpsAylDSeQRi~A-skv----------------------- 498 (592)
T KOG0063|consen 443 PLQIENIIDQEVQGLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQRIIA-SKV----------------------- 498 (592)
T ss_pred hhhHHHHHhHHhhcCCchhhHHHHHHHhcCCCCceEEecCchhhcChHHHHHH-HHH-----------------------
Confidence 33445666777889999999999999999999999999999999998633221 111
Q ss_pred ccccchhhhhhhh-ccccceeeeeeeehheecc-cceEEEeec
Q psy12535 114 LGVRGALSLVRTS-FLKEKTVMLITHQIQYLTH-VDHVMLLEK 154 (209)
Q Consensus 114 ~~~~~~~~~~~~~-~~~~~TiIvitH~l~~l~~-~DrV~~L~~ 154 (209)
+++. ...++|-.+|.|++-+... +|||++.+.
T Consensus 499 ---------ikRfilhakktafvVEhdfImaTYladrvivf~G 532 (592)
T KOG0063|consen 499 ---------IKRFILHAKKTAFVVEHDFIMATYLADRVIVFEG 532 (592)
T ss_pred ---------HHHHHHhccchhhhhhhHHHHHHhhcceeEEEec
Confidence 1111 2357899999999988775 799999863
No 434
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=98.43 E-value=1.1e-07 Score=99.38 Aligned_cols=47 Identities=32% Similarity=0.413 Sum_probs=39.6
Q ss_pred cccceecCCccchhhh----hHHH--------HhhhcceeeccCcchhhhhhhhhhhhh
Q psy12535 42 GDKGVSLSGGQRARIS----LARA--------VYKRADVYLLDDPLSAVDAHVGKHLFE 88 (209)
Q Consensus 42 g~~g~~LSgGqrQRla----iARa--------l~~~p~illLDEPts~LD~~~~~~~~~ 88 (209)
......|||||||+++ +|++ +..+|+++||||||++||+.+...+++
T Consensus 1242 ~~~~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ 1300 (1353)
T TIGR02680 1242 THRFGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFG 1300 (1353)
T ss_pred hccccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHH
Confidence 3346789999999996 5755 457999999999999999998888876
No 435
>KOG0063|consensus
Probab=98.41 E-value=1.6e-07 Score=87.76 Aligned_cols=81 Identities=25% Similarity=0.414 Sum_probs=64.8
Q ss_pred eecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccch
Q psy12535 40 LVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGA 119 (209)
Q Consensus 40 ~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (209)
.+.+....||||+-||.+||.+.+.+.|++++|||.|-||...+...-.
T Consensus 206 ~~~re~~~lsggelqrfaia~~~vq~advyMFDEpSsYLDVKQRLkaA~------------------------------- 254 (592)
T KOG0063|consen 206 LLDREVEQLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRLKAAI------------------------------- 254 (592)
T ss_pred HHHhhhhhcccchhhhhhhhhhhhhhcceeEecCCcccchHHHhhhHHH-------------------------------
Confidence 3445567899999999999999999999999999999999964433322
Q ss_pred hhhhhhhccccceeeeeeeehheecc-cceEEEee
Q psy12535 120 LSLVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLE 153 (209)
Q Consensus 120 ~~~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~ 153 (209)
.++.+...++=||+|.||++.+.. .|-|.+|.
T Consensus 255 --~IRsl~~p~~YiIVVEHDLsVLDylSDFiCcLY 287 (592)
T KOG0063|consen 255 --TIRSLINPDRYIIVVEHDLSVLDYLSDFICCLY 287 (592)
T ss_pred --HHHHhhCCCCeEEEEEeechHHHhhhcceeEEe
Confidence 334444568899999999999886 58887774
No 436
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.41 E-value=6.5e-07 Score=72.50 Aligned_cols=86 Identities=14% Similarity=0.038 Sum_probs=58.6
Q ss_pred CCceeecccceecCCccch------hhhhHHHHhhhcceeeccCcchhhh---hhhhhhhhhhhhhccccCCCCccccch
Q psy12535 36 GDRTLVGDKGVSLSGGQRA------RISLARAVYKRADVYLLDDPLSAVD---AHVGKHLFEDCITGLHTGVPRFDSRWG 106 (209)
Q Consensus 36 g~~t~vg~~g~~LSgGqrQ------RlaiARal~~~p~illLDEPts~LD---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (209)
|....+......+|+|++| ....+.+...+|+++++|||++.+| ......+.+
T Consensus 60 g~l~~~d~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~------------------ 121 (187)
T cd01124 60 GLLAIVDADPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRR------------------ 121 (187)
T ss_pred CCeEEEecCccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHH------------------
Confidence 3345556667789999998 4445555667999999999999999 332322222
Q ss_pred hhhhcccccccchhhhhhhhccccceeeeeeeehhe---------ecc-cceEEEeec
Q psy12535 107 RSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQY---------LTH-VDHVMLLEK 154 (209)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~---------l~~-~DrV~~L~~ 154 (209)
++......|.|+|+++|.... +.. +|.|+.|+.
T Consensus 122 ---------------l~~~l~~~g~tvi~v~~~~~~~~~~~~~~~~~~~aD~ii~l~~ 164 (187)
T cd01124 122 ---------------LLFALKRFGVTTLLTSEQSGLEGTGFGGGDVEYLVDGVIRLRL 164 (187)
T ss_pred ---------------HHHHHHHCCCEEEEEeccccCCCcccCcCceeEeeeEEEEEEE
Confidence 222223358899999997654 444 799998873
No 437
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=98.37 E-value=9e-08 Score=95.29 Aligned_cols=85 Identities=14% Similarity=0.140 Sum_probs=62.6
Q ss_pred eecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccch
Q psy12535 40 LVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGA 119 (209)
Q Consensus 40 ~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (209)
-+....+.+|+||+|++.|++++ .+|.++|||||++|+|+.....+...++..
T Consensus 383 si~~~lStfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~-------------------------- 435 (782)
T PRK00409 383 SIEQSLSTFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEY-------------------------- 435 (782)
T ss_pred chhhchhHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHH--------------------------
Confidence 34455678999999999999998 889999999999999998776665543321
Q ss_pred hhhhhhhccccceeeeeeeehheeccc-ceEEEeecccee
Q psy12535 120 LSLVRTSFLKEKTVMLITHQIQYLTHV-DHVMLLEKGSVE 158 (209)
Q Consensus 120 ~~~~~~~~~~~~TiIvitH~l~~l~~~-DrV~~L~~G~i~ 158 (209)
....+.++|++||+.+....+ ++..++ ++.+.
T Consensus 436 ------l~~~~~~vIitTH~~el~~~~~~~~~v~-~~~~~ 468 (782)
T PRK00409 436 ------LRKRGAKIIATTHYKELKALMYNREGVE-NASVE 468 (782)
T ss_pred ------HHHCCCEEEEECChHHHHHHHhcCCCeE-EEEEE
Confidence 123478999999998876653 444333 44443
No 438
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=98.28 E-value=6e-07 Score=83.76 Aligned_cols=85 Identities=24% Similarity=0.268 Sum_probs=70.0
Q ss_pred cccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhh
Q psy12535 42 GDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALS 121 (209)
Q Consensus 42 g~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (209)
-....+||-|||.|+.||+++..+|.+++.||-.|.||+.+...+...+...
T Consensus 502 Rr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkisel---------------------------- 553 (593)
T COG2401 502 RRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISEL---------------------------- 553 (593)
T ss_pred hccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHH----------------------------
Confidence 3456799999999999999999999999999999999999988886643221
Q ss_pred hhhhhccccceeeeeeeehheecc--cceEEEeecccee
Q psy12535 122 LVRTSFLKEKTVMLITHQIQYLTH--VDHVMLLEKGSVE 158 (209)
Q Consensus 122 ~~~~~~~~~~TiIvitH~l~~l~~--~DrV~~L~~G~i~ 158 (209)
. ...+.|++++||+.+.... -|.++++.-|++.
T Consensus 554 -a---Re~giTlivvThrpEv~~AL~PD~li~vgYg~v~ 588 (593)
T COG2401 554 -A---REAGITLIVVTHRPEVGNALRPDTLILVGYGKVP 588 (593)
T ss_pred -H---HHhCCeEEEEecCHHHHhccCCceeEEeeccccc
Confidence 1 2248899999999999864 4999999877664
No 439
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=98.21 E-value=1.1e-06 Score=70.96 Aligned_cols=66 Identities=24% Similarity=0.300 Sum_probs=48.4
Q ss_pred ceecCCccchhhhhHHHHhhhc---ceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhh
Q psy12535 45 GVSLSGGQRARISLARAVYKRA---DVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALS 121 (209)
Q Consensus 45 g~~LSgGqrQRlaiARal~~~p---~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (209)
...+|.|++|.+.|+.+++..+ .++++|||-++|.|..+..+.+.+
T Consensus 234 ~~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l------------------------------- 282 (303)
T PF13304_consen 234 LSSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELL------------------------------- 282 (303)
T ss_dssp GS---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHH-------------------------------
T ss_pred eccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHH-------------------------------
Confidence 3478999999999999888776 899999999999999888887532
Q ss_pred hhhhhccccceeeeeeeehhee
Q psy12535 122 LVRTSFLKEKTVMLITHQIQYL 143 (209)
Q Consensus 122 ~~~~~~~~~~TiIvitH~l~~l 143 (209)
......+.-+|++||.+..+
T Consensus 283 --~~~~~~~~QviitTHSp~il 302 (303)
T PF13304_consen 283 --KELSKKNIQVIITTHSPFIL 302 (303)
T ss_dssp --HHTGGGSSEEEEEES-GGG-
T ss_pred --HhhCccCCEEEEeCccchhc
Confidence 12122367899999998754
No 440
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=98.18 E-value=9.9e-07 Score=74.10 Aligned_cols=68 Identities=13% Similarity=0.092 Sum_probs=45.8
Q ss_pred chhhhhHHHHhh--hcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhhhhhhcccc
Q psy12535 53 RARISLARAVYK--RADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKE 130 (209)
Q Consensus 53 rQRlaiARal~~--~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (209)
.+|+.-+-..+. +|+++|+|||++++|+.....+...++. ....++
T Consensus 91 ~~~~~~iL~~~~~~~p~llllDEp~~glD~~~~~~l~~~ll~--------------------------------~l~~~~ 138 (199)
T cd03283 91 LRRLKEIVEKAKKGEPVLFLLDEIFKGTNSRERQAASAAVLK--------------------------------FLKNKN 138 (199)
T ss_pred HHHHHHHHHhccCCCCeEEEEecccCCCCHHHHHHHHHHHHH--------------------------------HHHHCC
Confidence 345444444445 9999999999999999877655443222 122347
Q ss_pred ceeeeeeeehheecc---cceEEEe
Q psy12535 131 KTVMLITHQIQYLTH---VDHVMLL 152 (209)
Q Consensus 131 ~TiIvitH~l~~l~~---~DrV~~L 152 (209)
.|+|++||+++.+.. .++|-.+
T Consensus 139 ~tiiivTH~~~~~~~~~~~~~v~~~ 163 (199)
T cd03283 139 TIGIISTHDLELADLLDLDSAVRNY 163 (199)
T ss_pred CEEEEEcCcHHHHHhhhcCCCeEEE
Confidence 899999999987654 3455444
No 441
>PRK13695 putative NTPase; Provisional
Probab=98.17 E-value=6.3e-07 Score=72.89 Aligned_cols=82 Identities=21% Similarity=0.219 Sum_probs=62.6
Q ss_pred cccceecCCccchhhhhHHHHhhhcceeeccC--cchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccch
Q psy12535 42 GDKGVSLSGGQRARISLARAVYKRADVYLLDD--PLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGA 119 (209)
Q Consensus 42 g~~g~~LSgGqrQRlaiARal~~~p~illLDE--Pts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (209)
+.....+|++++-++.+++..+.+|+++|+|| |+.++|....+.+.
T Consensus 73 ~~~~~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~~~~~l~-------------------------------- 120 (174)
T PRK13695 73 GKYVVNLEDLERIGIPALERALEEADVIIIDEIGKMELKSPKFVKAVE-------------------------------- 120 (174)
T ss_pred eeEEEehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhHHHHHHHH--------------------------------
Confidence 44556799999999999999999999999999 66566654322221
Q ss_pred hhhhhhhccccceeeeeeeehheecccceEEEeeccceeec
Q psy12535 120 LSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAF 160 (209)
Q Consensus 120 ~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~ 160 (209)
.....++++|+++|+......+|+|..+.+|+|.+.
T Consensus 121 -----~~~~~~~~~i~v~h~~~~~~~~~~i~~~~~~~i~~~ 156 (174)
T PRK13695 121 -----EVLDSEKPVIATLHRRSVHPFVQEIKSRPGGRVYEL 156 (174)
T ss_pred -----HHHhCCCeEEEEECchhhHHHHHHHhccCCcEEEEE
Confidence 122357899999998544456899999999999765
No 442
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.13 E-value=1.6e-06 Score=73.64 Aligned_cols=62 Identities=19% Similarity=0.196 Sum_probs=47.1
Q ss_pred cchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhhhhhhccc--
Q psy12535 52 QRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLK-- 129 (209)
Q Consensus 52 qrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 129 (209)
+-||+++|++++.+|.++|||||++|+|+.....+...++.. ...+
T Consensus 95 el~~l~~~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~--------------------------------l~~~~~ 142 (213)
T cd03281 95 DLYQVSKALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEH--------------------------------LLKRGP 142 (213)
T ss_pred HHHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHH--------------------------------HHhcCC
Confidence 359999999999999999999999999997655554433322 1112
Q ss_pred -cceeeeeeeehheecc
Q psy12535 130 -EKTVMLITHQIQYLTH 145 (209)
Q Consensus 130 -~~TiIvitH~l~~l~~ 145 (209)
+.++|++||+.+.+..
T Consensus 143 ~~~~vli~TH~~~l~~~ 159 (213)
T cd03281 143 ECPRVIVSTHFHELFNR 159 (213)
T ss_pred CCcEEEEEcChHHHHHh
Confidence 3489999999987654
No 443
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=97.94 E-value=5.3e-06 Score=69.26 Aligned_cols=44 Identities=14% Similarity=0.197 Sum_probs=38.2
Q ss_pred ecCCc--cchhhhhHHHHhhhcceeeccCcc-----hhhhhhhhhhhhhhh
Q psy12535 47 SLSGG--QRARISLARAVYKRADVYLLDDPL-----SAVDAHVGKHLFEDC 90 (209)
Q Consensus 47 ~LSgG--qrQRlaiARal~~~p~illLDEPt-----s~LD~~~~~~~~~~~ 90 (209)
..+|+ |++++.|||+++.+|+++++|||| ++||+.....+.+.+
T Consensus 150 a~~~~~v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~ 200 (215)
T PTZ00132 150 AKSNYNFEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKEL 200 (215)
T ss_pred CCCCCCHHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHH
Confidence 34444 888899999999999999999999 999999888887754
No 444
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=97.91 E-value=9.2e-06 Score=81.42 Aligned_cols=69 Identities=16% Similarity=0.174 Sum_probs=52.7
Q ss_pred hhhcceeeccCcchhh-hhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehh
Q psy12535 63 YKRADVYLLDDPLSAV-DAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQ 141 (209)
Q Consensus 63 ~~~p~illLDEPts~L-D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~ 141 (209)
..+|.++++|||+.+| |+.....+.+ .+++..+.+.++|++||+++
T Consensus 650 ~~~p~illlDE~~~~L~d~~~~~~i~~---------------------------------~lk~~RK~~~~vil~Tq~~~ 696 (818)
T PRK13830 650 TGAPSLIILDEAWLMLGHPVFRDKIRE---------------------------------WLKVLRKANCAVVLATQSIS 696 (818)
T ss_pred CCCCcEEEEECchhhcCCHHHHHHHHH---------------------------------HHHHHHHcCCEEEEEeCCHH
Confidence 5799999999999999 5766555544 23333345789999999998
Q ss_pred ee----------cccceEEEeeccceeecchhh
Q psy12535 142 YL----------THVDHVMLLEKGSVEAFGTTT 164 (209)
Q Consensus 142 ~l----------~~~DrV~~L~~G~i~~~G~~~ 164 (209)
.+ ..|+.+++|.+|++...|..+
T Consensus 697 d~~~s~~a~~i~~~~~t~i~L~n~~a~~~~~~~ 729 (818)
T PRK13830 697 DAERSGIIDVLKESCPTKICLPNGAAREPGTRE 729 (818)
T ss_pred HHhcCchHHHHHhcCCeEEECCCccccccchHH
Confidence 76 368999999999987766543
No 445
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=97.89 E-value=4.2e-06 Score=83.43 Aligned_cols=69 Identities=14% Similarity=0.203 Sum_probs=53.8
Q ss_pred ecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchh
Q psy12535 41 VGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGAL 120 (209)
Q Consensus 41 vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (209)
+.+..+++|+|++++..|++++ .+|.++|||||++|+|+.....+...++.
T Consensus 379 i~~~LStfS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD~~eg~ala~aiLe---------------------------- 429 (771)
T TIGR01069 379 IEQNLSTFSGHMKNISAILSKT-TENSLVLFDELGAGTDPDEGSALAISILE---------------------------- 429 (771)
T ss_pred HhhhhhHHHHHHHHHHHHHHhc-CCCcEEEecCCCCCCCHHHHHHHHHHHHH----------------------------
Confidence 3345678999999999988877 78999999999999999877766443322
Q ss_pred hhhhhhccccceeeeeeeehhe
Q psy12535 121 SLVRTSFLKEKTVMLITHQIQY 142 (209)
Q Consensus 121 ~~~~~~~~~~~TiIvitH~l~~ 142 (209)
.....+.++|++||+.+.
T Consensus 430 ----~l~~~g~~viitTH~~eL 447 (771)
T TIGR01069 430 ----YLLKQNAQVLITTHYKEL 447 (771)
T ss_pred ----HHHhcCCEEEEECChHHH
Confidence 222357899999998775
No 446
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.88 E-value=1.7e-05 Score=70.07 Aligned_cols=37 Identities=14% Similarity=0.249 Sum_probs=28.5
Q ss_pred ccceeeeeeeehhe--e------------cccceEEEeeccceeecchhhHHh
Q psy12535 129 KEKTVMLITHQIQY--L------------THVDHVMLLEKGSVEAFGTTTQLL 167 (209)
Q Consensus 129 ~~~TiIvitH~l~~--l------------~~~DrV~~L~~G~i~~~G~~~~l~ 167 (209)
.|+|+|++||+.+. + ..++|+++|++|+ ..|+++++.
T Consensus 218 ~G~~vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~~--~~g~~~~i~ 268 (270)
T TIGR02858 218 AGVSIIATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRRK--GPGTVEAVY 268 (270)
T ss_pred CCCEEEEEechhHHHHHHhChHHHHHHhcCceEEEEEEecCC--CCCceeecc
Confidence 58899999996654 3 3479999999887 677776654
No 447
>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A.
Probab=97.84 E-value=6.4e-06 Score=61.02 Aligned_cols=49 Identities=24% Similarity=0.286 Sum_probs=34.5
Q ss_pred ecccceecCCccchh-hhhHHH------Hhh------hcceeeccCcchhhhhhhhhhhhhh
Q psy12535 41 VGDKGVSLSGGQRAR-ISLARA------VYK------RADVYLLDDPLSAVDAHVGKHLFED 89 (209)
Q Consensus 41 vg~~g~~LSgGqrQR-laiARa------l~~------~p~illLDEPts~LD~~~~~~~~~~ 89 (209)
+......+||||||. +.+|.+ +.. .|++++|||||++||+.....+++.
T Consensus 26 ~~~~~~~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~ 87 (90)
T PF13558_consen 26 TSRSFGTLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDL 87 (90)
T ss_dssp EEEEGGGS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHH
T ss_pred eeccCCCCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHH
Confidence 445567899999953 333332 223 3789999999999999988877663
No 448
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=97.49 E-value=6.9e-05 Score=77.73 Aligned_cols=73 Identities=26% Similarity=0.357 Sum_probs=58.8
Q ss_pred cceecCCccchhhhhHHHHh----hhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccch
Q psy12535 44 KGVSLSGGQRARISLARAVY----KRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGA 119 (209)
Q Consensus 44 ~g~~LSgGqrQRlaiARal~----~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (209)
....||||||-..|||-.++ +..++++|||-=++||..+...+..
T Consensus 1063 ~l~~LSGGEKsLtAlAllFAi~~~~PaPf~vLDEVDAaLD~~Nv~r~~~------------------------------- 1111 (1163)
T COG1196 1063 SLSLLSGGEKSLTALALLFAIQKYRPAPFYVLDEVDAALDDANVERVAR------------------------------- 1111 (1163)
T ss_pred chhhcCCcHHHHHHHHHHHHHHhhCCCCeeeeccchhhccHHHHHHHHH-------------------------------
Confidence 45679999999999998876 5679999999999999998877755
Q ss_pred hhhhhhhccccceeeeeeeehheecccceEE
Q psy12535 120 LSLVRTSFLKEKTVMLITHQIQYLTHVDHVM 150 (209)
Q Consensus 120 ~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~ 150 (209)
+|+.. .++.=.|||||+..++..+|+++
T Consensus 1112 --~i~e~-s~~sQFIvIThr~~~m~~ad~l~ 1139 (1163)
T COG1196 1112 --LIKEM-SKETQFIVITHRKGTMEAADRLV 1139 (1163)
T ss_pred --HHHHh-CcCCeEEEEEcChHHHHHHHHHe
Confidence 33332 25667999999999998887654
No 449
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.21 E-value=0.00055 Score=58.11 Aligned_cols=37 Identities=19% Similarity=0.037 Sum_probs=30.6
Q ss_pred ecCCccchhhhhHHHHhh--hcceeeccCcchhhhhhhh
Q psy12535 47 SLSGGQRARISLARAVYK--RADVYLLDDPLSAVDAHVG 83 (209)
Q Consensus 47 ~LSgGqrQRlaiARal~~--~p~illLDEPts~LD~~~~ 83 (209)
..|.++.+.+.+++.++. +|+++++||||+.+|....
T Consensus 100 ~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~ 138 (234)
T PRK06067 100 WNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEE 138 (234)
T ss_pred cCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCH
Confidence 356788999999999997 8999999999987775433
No 450
>PF09818 ABC_ATPase: Predicted ATPase of the ABC class; InterPro: IPR019195 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry consists of various predicted ABC transporter class ATPases.
Probab=97.16 E-value=0.00079 Score=63.23 Aligned_cols=120 Identities=16% Similarity=0.214 Sum_probs=82.5
Q ss_pred eeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCC
Q psy12535 20 VVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVP 99 (209)
Q Consensus 20 ~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~ 99 (209)
.+..+.+..||..||.|.+|-- =--.+=||-..|-..|.-||-..+++||+||=|||-..-.....++.++..-.
T Consensus 296 ~V~~vDISpFI~~LP~g~dT~~-FsT~~ASGSTSqAAnI~EAlE~Ga~~LLiDEDtsATNfmiRD~rMq~Lv~k~k---- 370 (448)
T PF09818_consen 296 SVEGVDISPFINNLPGGKDTTC-FSTENASGSTSQAANIMEALEAGARLLLIDEDTSATNFMIRDERMQALVSKEK---- 370 (448)
T ss_pred eEeCccchHHHhhCCCCCCCCc-ccccCCCchHHHHHHHHHHHHcCCCEEEEcCcccchheeehhHHHHHhhccCC----
Confidence 3445567789999999999862 22236699999999999999999999999999999877655555555542211
Q ss_pred Cccccchhhhhcccccccchhhhhhhhcc-ccceeeeeee-ehheecccceEEEeecccee
Q psy12535 100 RFDSRWGRSFFGSALGVRGALSLVRTSFL-KEKTVMLITH-QIQYLTHVDHVMLLEKGSVE 158 (209)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~TiIvitH-~l~~l~~~DrV~~L~~G~i~ 158 (209)
.-..-+.+.++.++. .|-+.|+|+= .-.++..+|+|++|++=+..
T Consensus 371 --------------EPITPfidrvr~l~~~~GvStIlV~Ggsgdy~~vAD~Vi~Md~Y~~~ 417 (448)
T PF09818_consen 371 --------------EPITPFIDRVRSLYEKLGVSTILVVGGSGDYFDVADRVIMMDEYRPK 417 (448)
T ss_pred --------------CCcchHHHHHHHHHHHcCceEEEEeccchhhHhhCCEEEEecCccch
Confidence 112223344444433 3655555555 44567789999999886543
No 451
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=97.09 E-value=0.00043 Score=67.75 Aligned_cols=44 Identities=27% Similarity=0.416 Sum_probs=32.8
Q ss_pred ceecCCccchhhhhHHHHh------hhcceeeccCcchhhhhhhhhhhhhh
Q psy12535 45 GVSLSGGQRARISLARAVY------KRADVYLLDDPLSAVDAHVGKHLFED 89 (209)
Q Consensus 45 g~~LSgGqrQRlaiARal~------~~p~illLDEPts~LD~~~~~~~~~~ 89 (209)
...|||||+|-++||-.++ .+.++ |+|||++.||......+.+.
T Consensus 549 ~~~lS~Ge~~~~~la~~~al~~~~~~~~p~-iiD~p~~~lD~~~r~~l~~~ 598 (650)
T TIGR03185 549 KERLSAGERQILAIALLWGLAKVSGRRLPV-IIDTPLGRLDSSHRENLVVN 598 (650)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCCE-EEcCCccccChHHHHHHHHH
Confidence 3589999999987665544 23556 56999999999877776543
No 452
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.98 E-value=0.00039 Score=59.51 Aligned_cols=60 Identities=10% Similarity=0.048 Sum_probs=42.3
Q ss_pred hhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhhhhhhcc-ccce
Q psy12535 54 ARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFL-KEKT 132 (209)
Q Consensus 54 QRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~T 132 (209)
++++-.-..+.+|.++|||||++|+++.....+...++.. + .. .+.+
T Consensus 98 ~~~~~il~~~~~~sLvLlDE~~~Gt~~~dg~~la~ail~~-----------------------------L---~~~~~~~ 145 (218)
T cd03286 98 SETANILRHATPDSLVILDELGRGTSTHDGYAIAHAVLEY-----------------------------L---VKKVKCL 145 (218)
T ss_pred HHHHHHHHhCCCCeEEEEecccCCCCchHHHHHHHHHHHH-----------------------------H---HHhcCCc
Confidence 3343333344789999999999999998877776643322 1 12 3789
Q ss_pred eeeeeeehheecc
Q psy12535 133 VMLITHQIQYLTH 145 (209)
Q Consensus 133 iIvitH~l~~l~~ 145 (209)
+|++||+++....
T Consensus 146 ~i~~TH~~el~~~ 158 (218)
T cd03286 146 TLFSTHYHSLCDE 158 (218)
T ss_pred EEEEeccHHHHHH
Confidence 9999999887654
No 453
>KOG0964|consensus
Probab=96.93 E-value=0.00031 Score=70.78 Aligned_cols=78 Identities=23% Similarity=0.303 Sum_probs=59.8
Q ss_pred eecCCccchhhhhHHHHhhh----cceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhh
Q psy12535 46 VSLSGGQRARISLARAVYKR----ADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALS 121 (209)
Q Consensus 46 ~~LSgGqrQRlaiARal~~~----p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (209)
.+||||||--+|||-.++-+ ++++||||--+|||+..+..+-..
T Consensus 1096 ~QLSGGQKsvvALaLIFaIQrcDPAPFYlfDEIDAaLDaQyR~aVa~l-------------------------------- 1143 (1200)
T KOG0964|consen 1096 EQLSGGQKSVVALALIFAIQRCDPAPFYLFDEIDAALDAQYRTAVADL-------------------------------- 1143 (1200)
T ss_pred HHhcCchHHHHHHHHHHHHHhcCCcchhhHhHHhhhccHHHHHHHHHH--------------------------------
Confidence 48999999999999988743 589999999999999887777553
Q ss_pred hhhhhccccceeeeeeeehheecccceEEEee-ccce
Q psy12535 122 LVRTSFLKEKTVMLITHQIQYLTHVDHVMLLE-KGSV 157 (209)
Q Consensus 122 ~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~-~G~i 157 (209)
++.+ ....-.|++|-+++++..+|.++-+. +.+|
T Consensus 1144 -Ikel-S~~aQFI~TTFRpEll~vAdKfygV~f~nKv 1178 (1200)
T KOG0964|consen 1144 -IKEL-SDSAQFITTTFRPELLSVADKFYGVKFENKV 1178 (1200)
T ss_pred -HHHH-hhccceEeecccHHHHHHHHhhhceeecccc
Confidence 2222 23356788888999999998877543 3444
No 454
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.81 E-value=0.0025 Score=54.61 Aligned_cols=32 Identities=28% Similarity=0.360 Sum_probs=23.4
Q ss_pred ecCCccchhhhhHHHHhh----hcceeeccCcchhh
Q psy12535 47 SLSGGQRARISLARAVYK----RADVYLLDDPLSAV 78 (209)
Q Consensus 47 ~LSgGqrQRlaiARal~~----~p~illLDEPts~L 78 (209)
.+|+++.++-.+.+.+-. +|+++++||||+++
T Consensus 95 ~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l 130 (230)
T PRK08533 95 LLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLI 130 (230)
T ss_pred cccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHh
Confidence 356776666555554443 59999999999999
No 455
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.76 E-value=0.0011 Score=56.82 Aligned_cols=59 Identities=15% Similarity=0.109 Sum_probs=37.4
Q ss_pred hhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhhhhhhcc-ccce
Q psy12535 54 ARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFL-KEKT 132 (209)
Q Consensus 54 QRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~T 132 (209)
++++-+-..+.++.++|||||.+|.|+.....+...++. .... .+.|
T Consensus 99 ~~~~~il~~~~~~sLvllDE~~~gT~~~d~~~i~~~il~--------------------------------~l~~~~~~~ 146 (222)
T cd03287 99 SETSHILSNCTSRSLVILDELGRGTSTHDGIAIAYATLH--------------------------------YLLEEKKCL 146 (222)
T ss_pred HHHHHHHHhCCCCeEEEEccCCCCCChhhHHHHHHHHHH--------------------------------HHHhccCCe
Confidence 333333334568999999999888776554444332222 1122 3789
Q ss_pred eeeeeeehheec
Q psy12535 133 VMLITHQIQYLT 144 (209)
Q Consensus 133 iIvitH~l~~l~ 144 (209)
+|++||+.+...
T Consensus 147 ~i~~TH~~~l~~ 158 (222)
T cd03287 147 VLFVTHYPSLGE 158 (222)
T ss_pred EEEEcccHHHHH
Confidence 999999988654
No 456
>KOG0933|consensus
Probab=96.71 E-value=0.0011 Score=67.13 Aligned_cols=44 Identities=32% Similarity=0.415 Sum_probs=36.7
Q ss_pred ceecCCccchhhhhHHHHh----hhcceeeccCcchhhhhhhhhhhhh
Q psy12535 45 GVSLSGGQRARISLARAVY----KRADVYLLDDPLSAVDAHVGKHLFE 88 (209)
Q Consensus 45 g~~LSgGqrQRlaiARal~----~~p~illLDEPts~LD~~~~~~~~~ 88 (209)
-..||||||..|||+-.|+ +.+++|||||.-+|||....+.+-.
T Consensus 1080 L~ELSGGQRSLVALsLIlamL~fkPAPlYILDEVDAALDLSHTQNIG~ 1127 (1174)
T KOG0933|consen 1080 LSELSGGQRSLVALSLILAMLKFKPAPLYILDEVDAALDLSHTQNIGR 1127 (1174)
T ss_pred HHHhcCchHHHHHHHHHHHHHcCCCCceeehhhhHHhhcchhhhhHHH
Confidence 3589999999999876654 6789999999999999977666644
No 457
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=96.67 E-value=0.0012 Score=66.74 Aligned_cols=55 Identities=15% Similarity=0.178 Sum_probs=41.4
Q ss_pred hHHHHhhhcceeeccCcchhh-hhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhhhhhhccccceeeee
Q psy12535 58 LARAVYKRADVYLLDDPLSAV-DAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLI 136 (209)
Q Consensus 58 iARal~~~p~illLDEPts~L-D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvi 136 (209)
|++++..+|.++++|||+.+| |+.....+.+. ++...+.+.+++++
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~---------------------------------lk~~RK~g~~vil~ 726 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREW---------------------------------LKVLRKANCLVLMA 726 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHH---------------------------------HHHHHhcCCEEEEE
Confidence 678889999999999999999 67655555442 22223457899999
Q ss_pred eeehheecc
Q psy12535 137 THQIQYLTH 145 (209)
Q Consensus 137 tH~l~~l~~ 145 (209)
||+++.+..
T Consensus 727 TQs~~d~~~ 735 (852)
T PRK13891 727 TQSLSDAAN 735 (852)
T ss_pred eCCHHHHhh
Confidence 999987643
No 458
>PF13175 AAA_15: AAA ATPase domain
Probab=96.46 E-value=0.0027 Score=57.09 Aligned_cols=46 Identities=11% Similarity=0.260 Sum_probs=36.0
Q ss_pred ceecCCccchhhhhHHHHh----hhc---c---eeeccCcchhhhhhhhhhhhhhh
Q psy12535 45 GVSLSGGQRARISLARAVY----KRA---D---VYLLDDPLSAVDAHVGKHLFEDC 90 (209)
Q Consensus 45 g~~LSgGqrQRlaiARal~----~~p---~---illLDEPts~LD~~~~~~~~~~~ 90 (209)
...+|.|.++.+.|+-.+. ... . |+++|||-+.|.|..++.+++.+
T Consensus 339 l~~~g~G~~~l~~~~~~~~~~~~~~~~~~~~~~illidEPE~~LHp~~q~~~~~~L 394 (415)
T PF13175_consen 339 LSQRGSGEQNLIYISLLINFLRENKESNNNNYNILLIDEPELHLHPQAQRKFIDFL 394 (415)
T ss_pred hhhcCcchHHHHHHHHHHHHHHHhhhccCcceeEEEEeCccccCCHHHHHHHHHHH
Confidence 3578999998888776653 122 2 99999999999999888887754
No 459
>PF13166 AAA_13: AAA domain
Probab=96.32 E-value=0.0032 Score=61.66 Aligned_cols=67 Identities=22% Similarity=0.425 Sum_probs=50.0
Q ss_pred ceecCCccchhhhhHHHH--hh-------hcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535 45 GVSLSGGQRARISLARAV--YK-------RADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG 115 (209)
Q Consensus 45 g~~LSgGqrQRlaiARal--~~-------~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (209)
...||-|+|.-||+|-=| +. +..++|+|+|.|.||......+...+
T Consensus 498 ~~~LSEGEk~~iAf~yFla~l~~~~~~~~~~~iiViDDPISSLD~~~~~~v~~~l------------------------- 552 (712)
T PF13166_consen 498 AKILSEGEKRAIAFAYFLAELKEDDEDINKKKIIVIDDPISSLDHNRRFGVASRL------------------------- 552 (712)
T ss_pred cCccCHHHHHHHHHHHHHHHHhhcccccCcCceEEECCCCCCCCHHHHHHHHHHH-------------------------
Confidence 468999999999998533 33 56799999999999997666665532
Q ss_pred ccchhhhhhhhc--cccceeeeeeeehheec
Q psy12535 116 VRGALSLVRTSF--LKEKTVMLITHQIQYLT 144 (209)
Q Consensus 116 ~~~~~~~~~~~~--~~~~TiIvitH~l~~l~ 144 (209)
.... .+.+=|||-||++.++.
T Consensus 553 --------~~~~~~~~~~QviIlTHn~~F~~ 575 (712)
T PF13166_consen 553 --------KEEIKNSKFRQVIILTHNLYFFK 575 (712)
T ss_pred --------HHHhhcCCcceEEEEeCcHHHHH
Confidence 2222 34567999999998754
No 460
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.27 E-value=0.0081 Score=46.26 Aligned_cols=33 Identities=15% Similarity=0.056 Sum_probs=26.4
Q ss_pred CCccchhhhhHHHHhhhcceeeccCcchhhhhh
Q psy12535 49 SGGQRARISLARAVYKRADVYLLDDPLSAVDAH 81 (209)
Q Consensus 49 SgGqrQRlaiARal~~~p~illLDEPts~LD~~ 81 (209)
+..+.++++.+++...+|+++|+||+++-++..
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~ 101 (165)
T cd01120 69 AAARLLSKAERLRERGGDDLIILDELTRLVRAL 101 (165)
T ss_pred cHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHH
Confidence 344455678888899999999999999877663
No 461
>COG3910 Predicted ATPase [General function prediction only]
Probab=95.85 E-value=0.012 Score=50.31 Aligned_cols=78 Identities=17% Similarity=0.285 Sum_probs=56.5
Q ss_pred ecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhhhhhh
Q psy12535 47 SLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTS 126 (209)
Q Consensus 47 ~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (209)
..|.|+-=---+.+.+ ++--|+|||||-++|-+.-+-.+.. .++..
T Consensus 129 ~~SHGEsf~~i~~~rf-~~~GiYiLDEPEa~LSp~RQlella---------------------------------~l~~l 174 (233)
T COG3910 129 HMSHGESFLAIFHNRF-NGQGIYILDEPEAALSPSRQLELLA---------------------------------ILRDL 174 (233)
T ss_pred hhccchHHHHHHHHHh-ccCceEEecCccccCCHHHHHHHHH---------------------------------HHHHH
Confidence 5699987655555555 4567999999999999964443332 34444
Q ss_pred ccccceeeeeeeehheeccc-ceEEEeecccee
Q psy12535 127 FLKEKTVMLITHQIQYLTHV-DHVMLLEKGSVE 158 (209)
Q Consensus 127 ~~~~~TiIvitH~l~~l~~~-DrV~~L~~G~i~ 158 (209)
...|.-+|++||.+=.+..- -.|+-++.+-+.
T Consensus 175 a~sGaQ~IiATHSPiLlAiP~A~I~~~~~~g~~ 207 (233)
T COG3910 175 ADSGAQIIIATHSPILLAIPGAEIYEISESGIE 207 (233)
T ss_pred HhcCCeEEEEecChhheeCCCcEEEEEecCCcc
Confidence 55688999999998888774 788888776653
No 462
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=95.78 E-value=0.0025 Score=60.36 Aligned_cols=72 Identities=22% Similarity=0.338 Sum_probs=45.9
Q ss_pred eeecccceecCCccchhhhhH--HHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccc
Q psy12535 39 TLVGDKGVSLSGGQRARISLA--RAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGV 116 (209)
Q Consensus 39 t~vg~~g~~LSgGqrQRlaiA--Ral~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (209)
..+......+|+|++|||.|+ .++...|+.+ ....+.++.
T Consensus 107 ~~l~~i~~~ls~g~~qRVvIDSl~aL~~~~~~~----------~~~r~~l~~---------------------------- 148 (484)
T TIGR02655 107 ALIERINYAIRKYKAKRVSIDSVTAVFQQYDAV----------SVVRREIFR---------------------------- 148 (484)
T ss_pred HHHHHHHHHHHHhCCcEEEEeehhHhhhhcCch----------HHHHHHHHH----------------------------
Confidence 334444568999999999999 5565555443 122233322
Q ss_pred cchhhhhhhhccccceeeeeeeehhe--------e-cc-cceEEEee
Q psy12535 117 RGALSLVRTSFLKEKTVMLITHQIQY--------L-TH-VDHVMLLE 153 (209)
Q Consensus 117 ~~~~~~~~~~~~~~~TiIvitH~l~~--------l-~~-~DrV~~L~ 153 (209)
+++.....+.|+|+++|+.+. + .. +|-|+.|+
T Consensus 149 -----Li~~L~~~g~TvLLtsh~~~~~~~~~~~~~~e~laDgVI~L~ 190 (484)
T TIGR02655 149 -----LVARLKQIGVTTVMTTERIEEYGPIARYGVEEFVSDNVVILR 190 (484)
T ss_pred -----HHHHHHHCCCEEEEEecCcccccccccCCceeEeeeeEEEEE
Confidence 222333458999999998753 2 33 69999886
No 463
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=95.70 E-value=0.0078 Score=51.36 Aligned_cols=29 Identities=34% Similarity=0.628 Sum_probs=22.4
Q ss_pred CCccchhhhhHH----------------HHhhhcceeeccCcchhh
Q psy12535 49 SGGQRARISLAR----------------AVYKRADVYLLDDPLSAV 78 (209)
Q Consensus 49 SgGqrQRlaiAR----------------al~~~p~illLDEPts~L 78 (209)
.+|+.|++.+++ +...+|+++|+| |++++
T Consensus 79 ~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviD-pl~~~ 123 (239)
T cd01125 79 DSGRIQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVID-PLVSF 123 (239)
T ss_pred eccCCCceecccCCcccccHHHHHHHHHHHhcCCCEEEEC-ChHHh
Confidence 367888887765 445799999999 88764
No 464
>COG4637 Predicted ATPase [General function prediction only]
Probab=95.66 E-value=0.014 Score=53.27 Aligned_cols=74 Identities=28% Similarity=0.421 Sum_probs=55.0
Q ss_pred eecCCccchhhhhHHHHh--hhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhhh
Q psy12535 46 VSLSGGQRARISLARAVY--KRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLV 123 (209)
Q Consensus 46 ~~LSgGqrQRlaiARal~--~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (209)
..||-|+-+-+++|-+|. +.|.+++||||-.+|-|..-..+.. ++
T Consensus 269 ~eLSDGTlRfl~l~t~Llsp~~p~ll~ldEPE~sLHP~lL~~La~---------------------------------~~ 315 (373)
T COG4637 269 RELSDGTLRFLALATLLLSPRPPPLLLLDEPETSLHPDLLPALAE---------------------------------LM 315 (373)
T ss_pred hhccccHHHHHHHHHHHcCCCCCceeEecCcccccCHhHHHHHHH---------------------------------HH
Confidence 379999999999999998 5689999999999999865444433 22
Q ss_pred hhhccccceeeeeeeehheeccc--ceEEEee
Q psy12535 124 RTSFLKEKTVMLITHQIQYLTHV--DHVMLLE 153 (209)
Q Consensus 124 ~~~~~~~~TiIvitH~l~~l~~~--DrV~~L~ 153 (209)
+.. .+..-|||+||....+... ..|++++
T Consensus 316 ~sA-ak~sQv~VsTHS~rLl~~~e~~~v~~~~ 346 (373)
T COG4637 316 RSA-AKRSQVIVSTHSPRLLNAVEEHSVFWLD 346 (373)
T ss_pred HHh-hccceEEEEeCCHHHHhhccccceEEec
Confidence 222 2333799999998887754 4555553
No 465
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.34 E-value=0.0071 Score=50.47 Aligned_cols=57 Identities=18% Similarity=0.156 Sum_probs=40.7
Q ss_pred hhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhhhhhhccccceeeee
Q psy12535 57 SLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLI 136 (209)
Q Consensus 57 aiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvi 136 (209)
+|+++|..+|+++++|||. |......+.+ ....|++++.+
T Consensus 66 ~i~~aLr~~pd~ii~gEir---d~e~~~~~l~-------------------------------------~a~~G~~v~~t 105 (198)
T cd01131 66 ALKAALRQDPDVILVGEMR---DLETIRLALT-------------------------------------AAETGHLVMST 105 (198)
T ss_pred HHHHHhcCCcCEEEEcCCC---CHHHHHHHHH-------------------------------------HHHcCCEEEEE
Confidence 5788999999999999996 4432222222 12347889999
Q ss_pred eeehheecccceEEEee
Q psy12535 137 THQIQYLTHVDHVMLLE 153 (209)
Q Consensus 137 tH~l~~l~~~DrV~~L~ 153 (209)
+|..+.....+|++.|-
T Consensus 106 ~Ha~~~~~~~~Rl~~l~ 122 (198)
T cd01131 106 LHTNSAAKTIDRIIDVF 122 (198)
T ss_pred ecCCcHHHHHhHHHhhc
Confidence 99888766678887764
No 466
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=95.29 E-value=0.007 Score=54.03 Aligned_cols=72 Identities=13% Similarity=0.111 Sum_probs=52.3
Q ss_pred hhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhhhhhhccccc-ee
Q psy12535 55 RISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEK-TV 133 (209)
Q Consensus 55 RlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-Ti 133 (209)
.-.++.+|..+|+++++|||.+. .. ..+++ ... .|. ++
T Consensus 208 ~~~l~~~Lr~~pd~ii~gE~r~~---e~-~~~l~------------------------------------a~~-~g~~~~ 246 (308)
T TIGR02788 208 KDLLQSCLRMRPDRIILGELRGD---EA-FDFIR------------------------------------AVN-TGHPGS 246 (308)
T ss_pred HHHHHHHhcCCCCeEEEeccCCH---HH-HHHHH------------------------------------HHh-cCCCeE
Confidence 34677788999999999999972 11 11212 111 343 56
Q ss_pred eeeeeehheecccceEEEeeccceeecchhhHHh
Q psy12535 134 MLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLL 167 (209)
Q Consensus 134 IvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~ 167 (209)
+.++|..+.....+|++.|..|++...|.+.+..
T Consensus 247 i~T~Ha~~~~~~~~Rl~~l~~~~~~~~g~~~~~~ 280 (308)
T TIGR02788 247 ITTLHAGSPEEAFEQLALMVKSSQAGLGLDFAYI 280 (308)
T ss_pred EEEEeCCCHHHHHHHHHHHhhccccccCCCHHHH
Confidence 8999998866668999999999999888877776
No 467
>COG3044 Predicted ATPase of the ABC class [General function prediction only]
Probab=95.12 E-value=0.051 Score=51.25 Aligned_cols=109 Identities=21% Similarity=0.206 Sum_probs=75.2
Q ss_pred chhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccc
Q psy12535 26 LKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRW 105 (209)
Q Consensus 26 l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (209)
+..||+.+|.|-+|.-.-.+ .=||-+.+--.|=+++=...+++++||-+|+...-... +...
T Consensus 300 ~SlFi~~LPggkdTp~fvtg-dASGStsmAa~IQeaiEagak~lliDED~sAtNllvrd-Vlak---------------- 361 (554)
T COG3044 300 LSLFINHLPGGKDTPDFVTG-DASGSTSMAAWIQEAIEAGAKTLLIDEDTSATNLLVRD-VLAK---------------- 361 (554)
T ss_pred hHHHHHhCCCCCCCcccccC-CCCchhHHHHHHHHHHHcCCcEEEEccCcchhheehhh-HHHH----------------
Confidence 55789999977777644333 56999999999999999999999999999998764333 2111
Q ss_pred hhhhhcccccccchhhhhhhhc---cccceeeeeeeehhe-ecccceEEEeecccee
Q psy12535 106 GRSFFGSALGVRGALSLVRTSF---LKEKTVMLITHQIQY-LTHVDHVMLLEKGSVE 158 (209)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~---~~~~TiIvitH~l~~-l~~~DrV~~L~~G~i~ 158 (209)
+-.+.+.+..+..... ..+-++|+||--+.. ++.+||+++|++-+-.
T Consensus 362 ------e~eG~rtl~pl~dei~s~~gd~iS~iaVtgglddlla~aDRaIvMeDhrpk 412 (554)
T COG3044 362 ------ESEGERTLTPLVDEIGSLRGDLISTIAVTGGLDDLLAVADRAIVMEDHRPK 412 (554)
T ss_pred ------HhcCcccchHHHHhhhhhccCceEEEEEeccchhhhhhcceEEEecccCcc
Confidence 1123333333333222 223688888887765 4568999999986654
No 468
>PRK13873 conjugal transfer ATPase TrbE; Provisional
Probab=95.04 E-value=0.016 Score=58.20 Aligned_cols=61 Identities=18% Similarity=0.243 Sum_probs=40.6
Q ss_pred HhhhcceeeccCcchhhh-hhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeeh
Q psy12535 62 VYKRADVYLLDDPLSAVD-AHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQI 140 (209)
Q Consensus 62 l~~~p~illLDEPts~LD-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l 140 (209)
+-.+|.++++|||+..|| +.....+.+ .++...+.+.+++++||++
T Consensus 632 ~~~~p~illlDE~~~~Ld~~~~~~~i~~---------------------------------~lk~~RK~~~~~i~~TQ~~ 678 (811)
T PRK13873 632 FDGRPTLLILDEAWLFLDDPVFAAQLRE---------------------------------WLKTLRKKNVSVIFATQSL 678 (811)
T ss_pred hcCCCcEEEEcChhhhCCCHHHHHHHHH---------------------------------HHHHHHHcCCEEEEEECCH
Confidence 445899999999999999 444444433 2223334578999999988
Q ss_pred hee----------cccceEEEeecc
Q psy12535 141 QYL----------THVDHVMLLEKG 155 (209)
Q Consensus 141 ~~l----------~~~DrV~~L~~G 155 (209)
+.+ ..++-.++|.+.
T Consensus 679 ~d~~~s~~~~~il~n~~t~i~L~~~ 703 (811)
T PRK13873 679 ADIDGSAIAPAIIESCPTRIFLPNE 703 (811)
T ss_pred HHHhcCchHHHHHHhCCeeEEcCCc
Confidence 643 234555556554
No 469
>KOG0962|consensus
Probab=94.97 E-value=0.017 Score=60.26 Aligned_cols=79 Identities=20% Similarity=0.264 Sum_probs=55.1
Q ss_pred ecCCccc------hhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchh
Q psy12535 47 SLSGGQR------ARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGAL 120 (209)
Q Consensus 47 ~LSgGqr------QRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (209)
.=|-||| =|+|+|=.+..+..||=|||||.+||..+..-+...+..- .
T Consensus 1183 RcSAGQKvLAsliIRLALAEtf~snCgvLALDEPTTNLD~~niesLa~~L~~I--------------------------I 1236 (1294)
T KOG0962|consen 1183 RCSAGQKVLASLIIRLALAETFGSNCGVLALDEPTTNLDRENIESLAKALSRI--------------------------I 1236 (1294)
T ss_pred CccchHHHHHHHHHHHHHHHHHhhccccccccCCccccCHhHHHHHHHHHHHH--------------------------H
Confidence 4588987 4889999999999999999999999998766554432211 1
Q ss_pred hhhhhhccccceeeeeeeehheecc------cceEEEee
Q psy12535 121 SLVRTSFLKEKTVMLITHQIQYLTH------VDHVMLLE 153 (209)
Q Consensus 121 ~~~~~~~~~~~TiIvitH~l~~l~~------~DrV~~L~ 153 (209)
..-+ ...+.-.|+||||-.++.. +++++-+.
T Consensus 1237 ~~rr--~q~nfqLiVITHDE~fv~~i~~~~~~e~~yr~~ 1273 (1294)
T KOG0962|consen 1237 EERR--RQRNFQLIVITHDEDFVQLLGRSAYPEYFYRVK 1273 (1294)
T ss_pred HHHh--hccCcceeeeehHHHHHHHhhhcccchheeeec
Confidence 1111 2346789999999877542 35666553
No 470
>KOG0996|consensus
Probab=94.83 E-value=0.02 Score=59.10 Aligned_cols=76 Identities=18% Similarity=0.240 Sum_probs=58.3
Q ss_pred cceecCCccchhhhhHHHHh----hhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccch
Q psy12535 44 KGVSLSGGQRARISLARAVY----KRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGA 119 (209)
Q Consensus 44 ~g~~LSgGqrQRlaiARal~----~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (209)
.+.+||||+|-.-+||-.++ +..++|++||--+|||..+..-|-.
T Consensus 1192 ~I~NLSGGEKTLSSLALVFALH~YkPTPlYVMDEIDAALDfkNVSIVan------------------------------- 1240 (1293)
T KOG0996|consen 1192 NISNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVAN------------------------------- 1240 (1293)
T ss_pred hcccCCcchhHHHHHHHHHHHHccCCCCceehhhHHHhhccccchhHHH-------------------------------
Confidence 45799999999988888876 5679999999999999976544432
Q ss_pred hhhhhhhccccceeeeeeeehheecccceEEEee
Q psy12535 120 LSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLE 153 (209)
Q Consensus 120 ~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~ 153 (209)
.++. ..++.-.|+||=+-++++.++|.+-+.
T Consensus 1241 --YIkE-rTkNAQFIIISLRnnMFELa~rLvGIY 1271 (1293)
T KOG0996|consen 1241 --YIKE-RTKNAQFIIISLRNNMFELANRLVGIY 1271 (1293)
T ss_pred --HHHH-hccCCeEEEEEehhhHHHHHhhheeeE
Confidence 2222 235667899998888888888877654
No 471
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=94.76 E-value=0.034 Score=53.85 Aligned_cols=75 Identities=24% Similarity=0.329 Sum_probs=55.9
Q ss_pred eecCCccchhhhhHHHHh--hh--cceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhh
Q psy12535 46 VSLSGGQRARISLARAVY--KR--ADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALS 121 (209)
Q Consensus 46 ~~LSgGqrQRlaiARal~--~~--p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (209)
.-.|||+--|++||--.+ .. .+.|||||--+|+--.+...|-+.+.
T Consensus 430 KvASGGELSRimLAlk~i~~~~~~~ptlIFDEVD~GIsG~~A~aVg~~L~------------------------------ 479 (557)
T COG0497 430 KVASGGELSRIMLALKVILSRKDDTPTLIFDEVDTGISGRVAQAVGKKLR------------------------------ 479 (557)
T ss_pred hhcchhHHHHHHHHHHHHHhccCCCCeEEEecccCCCChHHHHHHHHHHH------------------------------
Confidence 346999999999998655 22 55999999999998877777755321
Q ss_pred hhhhhccccceeeeeeeehheecccceEEEeec
Q psy12535 122 LVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEK 154 (209)
Q Consensus 122 ~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~ 154 (209)
+ ..+..-|++|||.+.....+|.=+++.+
T Consensus 480 ---~-Ls~~~QVl~VTHlPQVAa~ad~H~~V~K 508 (557)
T COG0497 480 ---R-LSEHHQVLCVTHLPQVAAMADTHFLVEK 508 (557)
T ss_pred ---H-HhcCceEEEEecHHHHHhhhcceEEEEE
Confidence 2 1245679999999999999865555543
No 472
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=94.57 E-value=0.027 Score=46.21 Aligned_cols=72 Identities=14% Similarity=0.128 Sum_probs=54.3
Q ss_pred CccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhhhhhhccc
Q psy12535 50 GGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLK 129 (209)
Q Consensus 50 gGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (209)
.|+-+|..||.++..+|+.+..+| +.+||...+.+.+.+ ......
T Consensus 60 ~g~idr~~L~~~vf~~~~~~~~le--~ilhP~i~~~i~~~i---------------------------------~~~~~~ 104 (188)
T TIGR00152 60 DGELDRKALGERVFNDPEELKWLN--NLLHPLIREWMKKLL---------------------------------AQFQSK 104 (188)
T ss_pred CCCCCHHHHHHHHhCCHHHHHHHH--HhhCHHHHHHHHHHH---------------------------------HHhhcC
Confidence 589999999999999999988776 789998766665432 222223
Q ss_pred cceeeeeeeehhe--ec-ccceEEEeeccc
Q psy12535 130 EKTVMLITHQIQY--LT-HVDHVMLLEKGS 156 (209)
Q Consensus 130 ~~TiIvitH~l~~--l~-~~DrV~~L~~G~ 156 (209)
+.+||+.+|.+.. +. .+|.|++++.+.
T Consensus 105 ~~~vvi~~pll~e~~~~~~~D~vv~V~~~~ 134 (188)
T TIGR00152 105 LAYVLLDVPLLFENKLRSLCDRVIVVDVSP 134 (188)
T ss_pred CCEEEEEchHhhhCCcHHhCCEEEEEECCH
Confidence 5689999998853 43 589999998653
No 473
>COG1195 RecF Recombinational DNA repair ATPase (RecF pathway) [DNA replication, recombination, and repair]
Probab=94.01 E-value=0.072 Score=49.19 Aligned_cols=42 Identities=29% Similarity=0.318 Sum_probs=35.7
Q ss_pred ecCCccchhhhhHHHHh---------hhcceeeccCcchhhhhhhhhhhhh
Q psy12535 47 SLSGGQRARISLARAVY---------KRADVYLLDDPLSAVDAHVGKHLFE 88 (209)
Q Consensus 47 ~LSgGqrQRlaiARal~---------~~p~illLDEPts~LD~~~~~~~~~ 88 (209)
-.|-||++-+++|--|+ ..++||||||-+|-||..-+..+++
T Consensus 275 ~~S~Gqqk~l~laLrLAe~~l~~~~~g~~PILLLDDv~seLD~~Rr~~Ll~ 325 (363)
T COG1195 275 FASQGQQKTLALALRLAEIELLREETGEYPILLLDDVASELDDGRRAALLD 325 (363)
T ss_pred hcCcchHHHHHHHHHHHHHHHHHHhcCCCCEEEechhhHhhCHHHHHHHHh
Confidence 57999999999887654 5689999999999999987777765
No 474
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=93.47 E-value=0.058 Score=54.20 Aligned_cols=49 Identities=10% Similarity=0.194 Sum_probs=35.3
Q ss_pred HHhhhcceeeccCcchhhh-hhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeee
Q psy12535 61 AVYKRADVYLLDDPLSAVD-AHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQ 139 (209)
Q Consensus 61 al~~~p~illLDEPts~LD-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~ 139 (209)
.+..+|.++++|||...|| +.....+.+ .++...+.+.+++++||+
T Consensus 638 ~~~g~p~il~iDE~w~~L~~~~~~~~i~~---------------------------------~lk~~RK~~~~~i~~TQ~ 684 (800)
T PRK13898 638 SLDGTPSMIVLDEAWALIDNPVFAPKIKD---------------------------------WLKVLRKLNTFVIFATQS 684 (800)
T ss_pred HhcCCCcEEEEeCChhhCCCHHHHHHHHH---------------------------------HHHHHHHcCCEEEEEeCC
Confidence 3456899999999999999 554544433 223333457899999999
Q ss_pred hhe
Q psy12535 140 IQY 142 (209)
Q Consensus 140 l~~ 142 (209)
++.
T Consensus 685 ~~d 687 (800)
T PRK13898 685 VED 687 (800)
T ss_pred HHH
Confidence 865
No 475
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=93.38 E-value=0.05 Score=51.29 Aligned_cols=39 Identities=13% Similarity=-0.008 Sum_probs=34.2
Q ss_pred ccceecCCccchhhhhHHHHh-------hhcceeeccCcchhhhhh
Q psy12535 43 DKGVSLSGGQRARISLARAVY-------KRADVYLLDDPLSAVDAH 81 (209)
Q Consensus 43 ~~g~~LSgGqrQRlaiARal~-------~~p~illLDEPts~LD~~ 81 (209)
....+.|.|+|+|++.+.+.+ .++-++++|+||+..|+.
T Consensus 217 ~~tsd~s~~~r~ra~~~a~~iAEyfr~~G~~VLlilDslTr~a~A~ 262 (432)
T PRK06793 217 VATSDESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDSVTRFADAR 262 (432)
T ss_pred EECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEecchHHHHHHH
Confidence 344678999999999999888 789999999999999995
No 476
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=92.60 E-value=0.094 Score=53.29 Aligned_cols=35 Identities=20% Similarity=0.081 Sum_probs=28.3
Q ss_pred ecCCccchhhhhHHHHhh--hcceeeccCc---chhhhhh
Q psy12535 47 SLSGGQRARISLARAVYK--RADVYLLDDP---LSAVDAH 81 (209)
Q Consensus 47 ~LSgGqrQRlaiARal~~--~p~illLDEP---ts~LD~~ 81 (209)
++|--+.....++.+|-. ++.++||||| |+.+|..
T Consensus 666 g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs~~dg~ 705 (854)
T PRK05399 666 GRSTFMVEMTETANILNNATERSLVLLDEIGRGTSTYDGL 705 (854)
T ss_pred CcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCCcchhH
Confidence 456666788888888876 8999999999 8888853
No 477
>COG4694 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.15 E-value=0.21 Score=48.65 Aligned_cols=71 Identities=24% Similarity=0.351 Sum_probs=49.6
Q ss_pred ecccce-ecCCccchhhhhHHH---Hhhhc-----ceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhc
Q psy12535 41 VGDKGV-SLSGGQRARISLARA---VYKRA-----DVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFG 111 (209)
Q Consensus 41 vg~~g~-~LSgGqrQRlaiARa---l~~~p-----~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (209)
-|+... .||-|++.-++++-= |.-+| +++++|+|.|.+|.....+.+.
T Consensus 522 ~g~~~gn~LSEGekt~iaf~yflakL~enpd~~k~kvvViDDPisSfDsn~lf~~~~----------------------- 578 (758)
T COG4694 522 DGQLVGNTLSEGEKTFIAFLYFLAKLKENPDISKNKVVVIDDPISSFDSNILFRVSV----------------------- 578 (758)
T ss_pred cCccccccccccchhHHHHHHHHHHHHhCcccccCeeEEecCCccccchhHHHHHHH-----------------------
Confidence 344444 499999999987644 44566 4789999999999854333332
Q ss_pred ccccccchhhhhhhhccccceeeeeeeehheec
Q psy12535 112 SALGVRGALSLVRTSFLKEKTVMLITHQIQYLT 144 (209)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~ 144 (209)
+++.+...++-||+.||+..+++
T Consensus 579 ----------~v~~~~t~~kQviVLtHntYF~r 601 (758)
T COG4694 579 ----------LVKEEKTNIKQVIVLTHNTYFYR 601 (758)
T ss_pred ----------HHHHHHhCceEEEEEeccceehH
Confidence 34444556889999999966654
No 478
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=91.17 E-value=0.2 Score=47.30 Aligned_cols=34 Identities=15% Similarity=0.036 Sum_probs=29.9
Q ss_pred eeeeeeeehheecccceEEEeeccceeecchhhHH
Q psy12535 132 TVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQL 166 (209)
Q Consensus 132 TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l 166 (209)
||++.+|+++. ..+|++.++.+|+|+..+...+-
T Consensus 308 TVlv~~hdm~e-~i~d~v~~i~dG~Ivls~~la~~ 341 (438)
T PRK07721 308 TVLVDGDDMNE-PIADTVRGILDGHFVLDRQLANK 341 (438)
T ss_pred EEEEECCCCCc-hhhhhEEEecCEEEEEeccHHHC
Confidence 99999999985 66899999999999998877553
No 479
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=90.57 E-value=0.087 Score=47.76 Aligned_cols=30 Identities=20% Similarity=0.198 Sum_probs=22.5
Q ss_pred hhhHHHHhhhcceeeccCcchhhhhhhhhhhhh
Q psy12535 56 ISLARAVYKRADVYLLDDPLSAVDAHVGKHLFE 88 (209)
Q Consensus 56 laiARal~~~p~illLDEPts~LD~~~~~~~~~ 88 (209)
-+|+++|..+||++++||+. |..+....++
T Consensus 186 ~~l~~~lr~~pd~i~vgEir---d~~~~~~~l~ 215 (343)
T TIGR01420 186 NALRAALREDPDVILIGEMR---DLETVELALT 215 (343)
T ss_pred HHHHHhhccCCCEEEEeCCC---CHHHHHHHHH
Confidence 35788899999999999997 6655444333
No 480
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=90.12 E-value=0.21 Score=45.17 Aligned_cols=42 Identities=12% Similarity=0.277 Sum_probs=30.9
Q ss_pred eeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheec
Q psy12535 69 YLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLT 144 (209)
Q Consensus 69 llLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~ 144 (209)
+++|||+.+||+...+.+.+. +.+. .++.++|++||+.+.+.
T Consensus 116 V~iiEp~~~Ld~~a~naLLk~---------------------------------LEep-~~~~~~Ilvth~~~~ll 157 (325)
T PRK08699 116 VILIHPAESMNLQAANSLLKV---------------------------------LEEP-PPQVVFLLVSHAADKVL 157 (325)
T ss_pred EEEEechhhCCHHHHHHHHHH---------------------------------HHhC-cCCCEEEEEeCChHhCh
Confidence 456899999999888777652 2232 24678999999988654
No 481
>KOG0018|consensus
Probab=89.67 E-value=0.33 Score=50.06 Aligned_cols=73 Identities=19% Similarity=0.240 Sum_probs=54.7
Q ss_pred cceecCCccchhhhhHHHHhh----hcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccch
Q psy12535 44 KGVSLSGGQRARISLARAVYK----RADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGA 119 (209)
Q Consensus 44 ~g~~LSgGqrQRlaiARal~~----~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (209)
...+||||+|--.|||--++- .++.++|||--+|||..+...+..
T Consensus 1048 ~m~~LSGGEKTvAaLALLFaihsy~PaPFfvlDEiDAALDntNi~kvas------------------------------- 1096 (1141)
T KOG0018|consen 1048 PMDNLSGGEKTVAALALLFAIHSYKPAPFFVLDEIDAALDNTNIGKVAS------------------------------- 1096 (1141)
T ss_pred chhhcCccHHHHHHHHHHHHhccCCCCCceehhhHHHHhhhccHHHHHH-------------------------------
Confidence 345899999999999988874 468999999999999987766643
Q ss_pred hhhhhhhccccceeeeeeeehheecccceEEEe
Q psy12535 120 LSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLL 152 (209)
Q Consensus 120 ~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L 152 (209)
.|+ ..+.-.||||=-.++...+|-.+-+
T Consensus 1097 --yIr---~~~~Q~IvISLK~~~y~kadaLVGv 1124 (1141)
T KOG0018|consen 1097 --YIR---SSNFQFIVISLKEEFYQKADALVGV 1124 (1141)
T ss_pred --HHh---cCCceEEEEeccHHHhhhhhceeee
Confidence 233 2355678888777777777655544
No 482
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=83.83 E-value=1.9 Score=36.08 Aligned_cols=32 Identities=16% Similarity=0.156 Sum_probs=21.5
Q ss_pred hhhhhccccceeeeeeeeh---------heecc-cceEEEee
Q psy12535 122 LVRTSFLKEKTVMLITHQI---------QYLTH-VDHVMLLE 153 (209)
Q Consensus 122 ~~~~~~~~~~TiIvitH~l---------~~l~~-~DrV~~L~ 153 (209)
+++.....+.|+++++|.. ..+.. ||.|++|+
T Consensus 136 l~~~lk~~~~tvll~s~~~~~~~~~~~~~~~~~l~D~vI~L~ 177 (224)
T TIGR03880 136 FYSSLRETGVTTILTSEADKTNVFASKYGLIEYLADGVIILK 177 (224)
T ss_pred HHHHHHhCCCEEEEEEcccCCCCCccCCCceEEEEeEEEEEe
Confidence 3444444688999999952 22444 69999995
No 483
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=83.74 E-value=0.43 Score=44.88 Aligned_cols=67 Identities=21% Similarity=0.318 Sum_probs=40.4
Q ss_pred hcceeeccCcchhhhhh-hhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhhhhhhccccceeeeee-eehhe
Q psy12535 65 RADVYLLDDPLSAVDAH-VGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLIT-HQIQY 142 (209)
Q Consensus 65 ~p~illLDEPts~LD~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvit-H~l~~ 142 (209)
++++||+|||...++.. ++..++. ++......++.+|++| |.+..
T Consensus 194 ~~dvLlIDDi~~l~~~~~~q~elf~---------------------------------~~n~l~~~~k~iIitsd~~p~~ 240 (440)
T PRK14088 194 KVDVLLIDDVQFLIGKTGVQTELFH---------------------------------TFNELHDSGKQIVICSDREPQK 240 (440)
T ss_pred cCCEEEEechhhhcCcHHHHHHHHH---------------------------------HHHHHHHcCCeEEEECCCCHHH
Confidence 69999999999887653 2334444 2222234466777766 67666
Q ss_pred eccc-ceEE-Eeeccceeecchhh
Q psy12535 143 LTHV-DHVM-LLEKGSVEAFGTTT 164 (209)
Q Consensus 143 l~~~-DrV~-~L~~G~i~~~G~~~ 164 (209)
+... +++. -+..|-++...+|+
T Consensus 241 l~~l~~rL~SR~~~gl~v~i~~pd 264 (440)
T PRK14088 241 LSEFQDRLVSRFQMGLVAKLEPPD 264 (440)
T ss_pred HHHHHHHHhhHHhcCceEeeCCCC
Confidence 6543 4443 24566666655544
No 484
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=80.55 E-value=2.1 Score=30.95 Aligned_cols=42 Identities=38% Similarity=0.373 Sum_probs=33.6
Q ss_pred ceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhh
Q psy12535 45 GVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHL 86 (209)
Q Consensus 45 g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~ 86 (209)
.....+++..+..+++|-...|.++++||+..-.+.......
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~ 99 (148)
T smart00382 58 KASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALL 99 (148)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHH
Confidence 345677788888888888888999999999998888655443
No 485
>PRK13764 ATPase; Provisional
Probab=79.86 E-value=2.5 Score=41.66 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=18.3
Q ss_pred ehheecc-cceEEEeeccce--eecch
Q psy12535 139 QIQYLTH-VDHVMLLEKGSV--EAFGT 162 (209)
Q Consensus 139 ~l~~l~~-~DrV~~L~~G~i--~~~G~ 162 (209)
++..+.. +|+|+++++|+| ++.++
T Consensus 373 ~lg~i~~iID~IV~I~~G~I~~v~~~~ 399 (602)
T PRK13764 373 ELGMIPQIVDTVIFIEDGEVSKVYDLE 399 (602)
T ss_pred hhchHHHhhcEEEEEeCCEEEEEEeee
Confidence 6666655 699999999999 45554
No 486
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=77.84 E-value=2.5 Score=34.56 Aligned_cols=65 Identities=14% Similarity=0.176 Sum_probs=42.3
Q ss_pred hhhHHHHh--hhcceeeccCcchhhhhh--hhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhhhhhhccccc
Q psy12535 56 ISLARAVY--KRADVYLLDDPLSAVDAH--VGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEK 131 (209)
Q Consensus 56 laiARal~--~~p~illLDEPts~LD~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (209)
...|+..+ .+.|++||||-..+++.. ....++ +++.. .-++.
T Consensus 84 ~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~---------------------------------~ll~~-rp~~~ 129 (159)
T cd00561 84 WAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVV---------------------------------DLLKA-KPEDL 129 (159)
T ss_pred HHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHH---------------------------------HHHHc-CCCCC
Confidence 44455555 457999999999987653 222332 23332 22466
Q ss_pred eeeeeeeehh--eecccceEEEeec
Q psy12535 132 TVMLITHQIQ--YLTHVDHVMLLEK 154 (209)
Q Consensus 132 TiIvitH~l~--~l~~~DrV~~L~~ 154 (209)
.+|++.++.. .++.||.|--|+.
T Consensus 130 evIlTGr~~p~~l~e~AD~VTEm~~ 154 (159)
T cd00561 130 ELVLTGRNAPKELIEAADLVTEMRE 154 (159)
T ss_pred EEEEECCCCCHHHHHhCceeeecce
Confidence 8999999765 3567899988865
No 487
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=76.57 E-value=3.3 Score=35.63 Aligned_cols=67 Identities=13% Similarity=0.046 Sum_probs=41.5
Q ss_pred ecCCccchhhhhHHHH--hhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhhhh
Q psy12535 47 SLSGGQRARISLARAV--YKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVR 124 (209)
Q Consensus 47 ~LSgGqrQRlaiARal--~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (209)
.+|--+.-...+++++ +.+..++|+||...|-++.....+...++..
T Consensus 102 ~~S~F~~E~~~~~~il~~~~~~sLvliDE~g~gT~~~eg~ai~~aile~------------------------------- 150 (235)
T PF00488_consen 102 GLSTFMAEMKRLSSILRNATEKSLVLIDELGRGTNPEEGIAIAIAILEY------------------------------- 150 (235)
T ss_dssp SSSHHHHHHHHHHHHHHH--TTEEEEEESTTTTSSHHHHHHHHHHHHHH-------------------------------
T ss_pred ccccHHHhHHHHHhhhhhcccceeeecccccCCCChhHHHHHHHHHHHH-------------------------------
Confidence 3454444445555555 3456699999999999988776665544322
Q ss_pred hhcc-ccceeeeeeeehheecc
Q psy12535 125 TSFL-KEKTVMLITHQIQYLTH 145 (209)
Q Consensus 125 ~~~~-~~~TiIvitH~l~~l~~ 145 (209)
+.. .+..+|++||..+....
T Consensus 151 -l~~~~~~~~i~~TH~~~l~~~ 171 (235)
T PF00488_consen 151 -LLEKSGCFVIIATHFHELAEL 171 (235)
T ss_dssp -HHHTTT-EEEEEES-GGGGGH
T ss_pred -HHHhccccEEEEeccchhHHH
Confidence 222 36789999998876543
No 488
>PRK04863 mukB cell division protein MukB; Provisional
Probab=75.73 E-value=1.8 Score=46.88 Aligned_cols=46 Identities=26% Similarity=0.400 Sum_probs=34.8
Q ss_pred cceecCCccchhhhhHHHHh--------h--------hc-ceeeccCcchhhhhhhhhhhhhhh
Q psy12535 44 KGVSLSGGQRARISLARAVY--------K--------RA-DVYLLDDPLSAVDAHVGKHLFEDC 90 (209)
Q Consensus 44 ~g~~LSgGqrQRlaiARal~--------~--------~p-~illLDEPts~LD~~~~~~~~~~~ 90 (209)
....||||||..+.++..++ . -| .+|+|||. +.+|..+...+++.|
T Consensus 1362 ~~~~lSgGE~~~~~~~~l~a~l~~~~~~~~~~r~~~~~~vrl~~lDea-~r~D~~~~~~~~~l~ 1424 (1486)
T PRK04863 1362 ESGALSTGEAIGTGMSILVMVVQSWEEESRRLRGKDISPCRLLFLDEA-ARLDAKSIATLFELC 1424 (1486)
T ss_pred CCCCCCcchhHHHHHHHHHHHHHHhhhccCcccCCcccchHHHHHHHh-hcCCHHHHHHHHHHH
Confidence 34689999998887766554 1 12 45689999 999999888887754
No 489
>PF13514 AAA_27: AAA domain
Probab=75.68 E-value=2 Score=44.81 Aligned_cols=67 Identities=21% Similarity=0.324 Sum_probs=47.0
Q ss_pred eecCCccch------hhhhHHHH-hhhcce-eeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccccc
Q psy12535 46 VSLSGGQRA------RISLARAV-YKRADV-YLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVR 117 (209)
Q Consensus 46 ~~LSgGqrQ------RlaiARal-~~~p~i-llLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (209)
..||.|-+= |+|++..+ -...++ +|+|+++-+.|..-...+++.
T Consensus 1024 ~~LS~GT~dQLYLALRLA~~e~~~~~~~~lP~IlDD~fvnfDd~R~~~~l~~---------------------------- 1075 (1111)
T PF13514_consen 1024 EELSRGTRDQLYLALRLALAELLAEQGEPLPFILDDIFVNFDDERARAALEL---------------------------- 1075 (1111)
T ss_pred HHhCHHHHHHHHHHHHHHHHHHHHhCCCCCcEEeeCCccccCHHHHHHHHHH----------------------------
Confidence 479999874 66777777 344555 899999999999766666552
Q ss_pred chhhhhhhhccccceeeeeeeehheeccc
Q psy12535 118 GALSLVRTSFLKEKTVMLITHQIQYLTHV 146 (209)
Q Consensus 118 ~~~~~~~~~~~~~~TiIvitH~l~~l~~~ 146 (209)
+... .+..=||+-||+.+.+..+
T Consensus 1076 -----L~~l-s~~~QVI~FTch~~l~~~a 1098 (1111)
T PF13514_consen 1076 -----LAEL-SRRRQVIYFTCHEHLVELA 1098 (1111)
T ss_pred -----HHHh-ccCCeEEEEeccHHHHHHH
Confidence 2222 2345799999988876644
No 490
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=75.29 E-value=3.7 Score=34.37 Aligned_cols=70 Identities=17% Similarity=0.209 Sum_probs=44.7
Q ss_pred hhhhHHHHh--hhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhhhhhhccccce
Q psy12535 55 RISLARAVY--KRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKT 132 (209)
Q Consensus 55 RlaiARal~--~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~T 132 (209)
-+..|+..+ .+.+++||||-+.+++..- + ...++++++.. .-++..
T Consensus 103 ~~~~a~~~l~~~~~dlvVLDEi~~Al~~gl---i----------------------------~~eeVl~~L~~-rp~~~e 150 (178)
T PRK07414 103 LWQYTQAVVDEGRYSLVVLDELSLAIQFGL---I----------------------------PETEVLEFLEK-RPSHVD 150 (178)
T ss_pred HHHHHHHHHhCCCCCEEEEehhHHHHHCCC---c----------------------------cHHHHHHHHHh-CCCCCE
Confidence 345555566 4469999999999998631 1 11223334433 224567
Q ss_pred eeeeeeehh--eecccceEEEeeccc
Q psy12535 133 VMLITHQIQ--YLTHVDHVMLLEKGS 156 (209)
Q Consensus 133 iIvitH~l~--~l~~~DrV~~L~~G~ 156 (209)
||++-++.. .++.||.|--|+.++
T Consensus 151 vILTGR~~p~~Lie~AD~VTEm~~~~ 176 (178)
T PRK07414 151 VILTGPEMPESLLAIADQITELRRSH 176 (178)
T ss_pred EEEECCCCCHHHHHhCCeeeeeeccc
Confidence 888888664 356789999998753
No 491
>COG3593 Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]
Probab=75.17 E-value=3.4 Score=40.54 Aligned_cols=54 Identities=19% Similarity=0.363 Sum_probs=39.2
Q ss_pred hcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheec
Q psy12535 65 RADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLT 144 (209)
Q Consensus 65 ~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~ 144 (209)
.|.|||.+||-+.|-|..+..+++ ++..+. .+.-+|++||..+.+.
T Consensus 301 r~~ILLiEEPEahLHPq~q~~l~~---------------------------------ll~~l~-~~~Q~IvTThS~~~~s 346 (581)
T COG3593 301 RPNILLIEEPEAHLHPQLQAVLWD---------------------------------LLNNLP-LGLQRIVTTHSPHLLS 346 (581)
T ss_pred ccceEEEeCchhhcCHHHHHHHHH---------------------------------HHhcCC-cceEEEEEcCCccccc
Confidence 345999999999999987765544 222323 3567999999999877
Q ss_pred c--cceEEEe
Q psy12535 145 H--VDHVMLL 152 (209)
Q Consensus 145 ~--~DrV~~L 152 (209)
. .+.++.|
T Consensus 347 ~~dl~si~~l 356 (581)
T COG3593 347 LADLDSICRL 356 (581)
T ss_pred ccCcccEEEE
Confidence 5 4677755
No 492
>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=75.11 E-value=4 Score=41.31 Aligned_cols=51 Identities=22% Similarity=0.320 Sum_probs=36.5
Q ss_pred CCceeecccceecCCccchhhh---hHHHHhhh--------c--ceeeccCcchhhhhhhhhhhhh
Q psy12535 36 GDRTLVGDKGVSLSGGQRARIS---LARAVYKR--------A--DVYLLDDPLSAVDAHVGKHLFE 88 (209)
Q Consensus 36 g~~t~vg~~g~~LSgGqrQRla---iARal~~~--------p--~illLDEPts~LD~~~~~~~~~ 88 (209)
-++|.++.. ++|||||++++ ||-+|.-. | .-+||||.++--|+......+.
T Consensus 981 ~iety~dS~--g~SGGQkekLa~~vLAAsL~Yql~~~g~~~p~f~tVIlDEAF~R~s~~~a~~~i~ 1044 (1104)
T COG4913 981 VIETYTDSQ--GGSGGQKEKLASYVLAASLSYQLCPDGRTKPLFGTVILDEAFSRSSHVVAGRIIA 1044 (1104)
T ss_pred eeeeeecCC--CCCcchHHHHHHHHHHHHHHHHhCCCCCcCcceeeEeechhhccCCHHHHHHHHH
Confidence 467777664 68999999996 44444321 2 4689999999988877666644
No 493
>PRK06893 DNA replication initiation factor; Validated
Probab=74.06 E-value=2.6 Score=35.78 Aligned_cols=15 Identities=27% Similarity=0.450 Sum_probs=12.0
Q ss_pred hhcceeeccCcchhh
Q psy12535 64 KRADVYLLDDPLSAV 78 (209)
Q Consensus 64 ~~p~illLDEPts~L 78 (209)
.++++|++||...-.
T Consensus 90 ~~~dlLilDDi~~~~ 104 (229)
T PRK06893 90 EQQDLVCLDDLQAVI 104 (229)
T ss_pred ccCCEEEEeChhhhc
Confidence 468999999988754
No 494
>KOG0250|consensus
Probab=72.57 E-value=6.3 Score=41.12 Aligned_cols=92 Identities=15% Similarity=0.153 Sum_probs=63.0
Q ss_pred CCCCCceeecccceecCCccchhhhhHHHHh----hhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhh
Q psy12535 33 LPSGDRTLVGDKGVSLSGGQRARISLARAVY----KRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRS 108 (209)
Q Consensus 33 lp~g~~t~vg~~g~~LSgGqrQRlaiARal~----~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (209)
+|.+-++-.-.....||||+|-=..+|-.|. .+.++..|||=---+|..+++..++.++..
T Consensus 975 ~~~~~~~~~v~d~~gLSGGERSFsTv~lllsLW~~me~Pfr~LDEFDVFMD~vNRKi~~dlLv~~--------------- 1039 (1074)
T KOG0250|consen 975 LPTSGNEKAVRDTRGLSGGERSFSTVCLLLSLWEVMECPFRALDEFDVFMDMVNRKISMDLLVDF--------------- 1039 (1074)
T ss_pred cCCCCcccccccccccCcccchHHHHHHHHHHhHhhcCchhhhhHHHHHHHHHHHHHHHHHHHHH---------------
Confidence 5554444333345689999999877777665 667899999988888998888887755422
Q ss_pred hhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeecc
Q psy12535 109 FFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKG 155 (209)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G 155 (209)
..... .-.|+++-|+++.+...|.|.+.+-+
T Consensus 1040 --------------a~~~~--~Q~IfiTPqdi~~l~~~~~i~v~rm~ 1070 (1074)
T KOG0250|consen 1040 --------------AKKKG--RQFIFITPQDISKLNSDDGIVVFRMS 1070 (1074)
T ss_pred --------------HHhhc--ceEEEEccccHhhhccccceEEeecc
Confidence 11111 23667777899998888877666533
No 495
>PRK04296 thymidine kinase; Provisional
Probab=72.27 E-value=6.2 Score=32.53 Aligned_cols=28 Identities=18% Similarity=-0.036 Sum_probs=20.7
Q ss_pred ccccceeeeeeee-----------hheecccceEEEeec
Q psy12535 127 FLKEKTVMLITHQ-----------IQYLTHVDHVMLLEK 154 (209)
Q Consensus 127 ~~~~~TiIvitH~-----------l~~l~~~DrV~~L~~ 154 (209)
...+.+||++.++ ...+..+|.|..|+.
T Consensus 103 ~~~g~~vi~tgl~~~~~~~~f~~~~~L~~~aD~V~~l~~ 141 (190)
T PRK04296 103 DDLGIPVICYGLDTDFRGEPFEGSPYLLALADKVTELKA 141 (190)
T ss_pred HHcCCeEEEEecCcccccCcCchHHHHHHhcCeEEEeeE
Confidence 3468899999988 234556899998864
No 496
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=71.85 E-value=3.9 Score=38.89 Aligned_cols=27 Identities=19% Similarity=0.112 Sum_probs=20.0
Q ss_pred ccccceeeeeeeehh---------eec-ccceEEEee
Q psy12535 127 FLKEKTVMLITHQIQ---------YLT-HVDHVMLLE 153 (209)
Q Consensus 127 ~~~~~TiIvitH~l~---------~l~-~~DrV~~L~ 153 (209)
...+.|+|+++|... ... .||.|+.|+
T Consensus 164 k~~g~TvLlt~~~~~~~~~~~~~~~~~~laDgVI~L~ 200 (509)
T PRK09302 164 KQKGVTAVITGERGDEYGPLTRYGVEEFVSDCVIILR 200 (509)
T ss_pred HhCCCEEEEEECCccCcCCccccCceEEEeeEEEEEe
Confidence 445889999999754 223 379999987
No 497
>TIGR01070 mutS1 DNA mismatch repair protein MutS.
Probab=70.42 E-value=3.6 Score=42.03 Aligned_cols=41 Identities=15% Similarity=-0.045 Sum_probs=25.4
Q ss_pred cCCccchhhhhHHHHh--hhcceeeccCcchhhhhhhhhhhhh
Q psy12535 48 LSGGQRARISLARAVY--KRADVYLLDDPLSAVDAHVGKHLFE 88 (209)
Q Consensus 48 LSgGqrQRlaiARal~--~~p~illLDEPts~LD~~~~~~~~~ 88 (209)
+|--+-....+|..|- .++.++||||+-.|-++.....+..
T Consensus 652 ~STF~~Em~e~a~IL~~at~~sLvllDE~GrGT~~~dg~aia~ 694 (840)
T TIGR01070 652 RSTFMVEMTEAANILHNATENSLVLFDEIGRGTSTYDGLALAW 694 (840)
T ss_pred cchHHHHHHHHHHHHhhCCCCEEEEEccCCCCCChhHHHHHHH
Confidence 4444455556666654 5788999999955555544444433
No 498
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=64.05 E-value=8.2 Score=32.08 Aligned_cols=69 Identities=19% Similarity=0.185 Sum_probs=43.8
Q ss_pred hhhhhHHHHh--hhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhhhhhhccccc
Q psy12535 54 ARISLARAVY--KRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEK 131 (209)
Q Consensus 54 QRlaiARal~--~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (209)
+-+..|+..+ .+.|++||||-+.+++..- + ...++++++.. .-++.
T Consensus 84 ~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gl---i----------------------------~~~~v~~lL~~-rp~~~ 131 (173)
T TIGR00708 84 AAWQHAKEMLADPELDLVLLDELTYALKYGY---L----------------------------DVEEVVEALQE-RPGHQ 131 (173)
T ss_pred HHHHHHHHHHhcCCCCEEEehhhHHHHHCCC---c----------------------------CHHHHHHHHHh-CCCCC
Confidence 3455666666 4579999999999998631 0 11122334432 22356
Q ss_pred eeeeeeeehh--eecccceEEEeec
Q psy12535 132 TVMLITHQIQ--YLTHVDHVMLLEK 154 (209)
Q Consensus 132 TiIvitH~l~--~l~~~DrV~~L~~ 154 (209)
-+|++-++.. .+..||.|--|+.
T Consensus 132 evVlTGR~~p~~l~e~AD~VTEm~~ 156 (173)
T TIGR00708 132 HVIITGRGCPQDLLELADLVTEMRP 156 (173)
T ss_pred EEEEECCCCCHHHHHhCceeeeecc
Confidence 7888888664 3567899998875
No 499
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=62.93 E-value=5.2 Score=31.94 Aligned_cols=47 Identities=19% Similarity=0.166 Sum_probs=33.5
Q ss_pred eecccceecCCccchhhh--hHHHHhh-hcceeeccCcchhhhhhhhhhhhhhh
Q psy12535 40 LVGDKGVSLSGGQRARIS--LARAVYK-RADVYLLDDPLSAVDAHVGKHLFEDC 90 (209)
Q Consensus 40 ~vg~~g~~LSgGqrQRla--iARal~~-~p~illLDEPts~LD~~~~~~~~~~~ 90 (209)
.+..+...+|+|++|++. +++.+-. +++++ |+|++|......+++.+
T Consensus 140 iv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~----~~Sa~~~~gi~~l~~~i 189 (196)
T PRK00454 140 IVLTKADKLKKGERKKQLKKVRKALKFGDDEVI----LFSSLKKQGIDELRAAI 189 (196)
T ss_pred EEEECcccCCHHHHHHHHHHHHHHHHhcCCceE----EEEcCCCCCHHHHHHHH
Confidence 456666778999999877 5555543 23333 99999998887777644
No 500
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=61.60 E-value=8.2 Score=32.61 Aligned_cols=68 Identities=16% Similarity=0.142 Sum_probs=43.2
Q ss_pred hhhhHHHHhh--hcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhhhhhhccccce
Q psy12535 55 RISLARAVYK--RADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKT 132 (209)
Q Consensus 55 RlaiARal~~--~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~T 132 (209)
-+..|+..+. +.+++||||-+.+++..- + ...++++++.. .-++..
T Consensus 103 ~~~~a~~~l~~~~ydlvVLDEi~~Al~~gl---i----------------------------~~eevi~~L~~-rp~~~e 150 (191)
T PRK05986 103 GWEEAKRMLADESYDLVVLDELTYALKYGY---L----------------------------DVEEVLEALNA-RPGMQH 150 (191)
T ss_pred HHHHHHHHHhCCCCCEEEEehhhHHHHCCC---c----------------------------cHHHHHHHHHc-CCCCCE
Confidence 3566676663 469999999999998631 0 11222334432 223567
Q ss_pred eeeeeeehh--eecccceEEEeec
Q psy12535 133 VMLITHQIQ--YLTHVDHVMLLEK 154 (209)
Q Consensus 133 iIvitH~l~--~l~~~DrV~~L~~ 154 (209)
||++-++.. .+..||.|.-|+.
T Consensus 151 vVlTGR~~p~~Lie~ADlVTEm~~ 174 (191)
T PRK05986 151 VVITGRGAPRELIEAADLVTEMRP 174 (191)
T ss_pred EEEECCCCCHHHHHhCchheeccc
Confidence 888888664 3567899988865
Done!