Query psy12535
Match_columns 209
No_of_seqs 255 out of 2325
Neff 6.1
Searched_HMMs 29240
Date Fri Aug 16 21:48:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12535.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12535hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f4c_A Multidrug resistance pr 100.0 2.9E-33 1E-37 286.0 2.8 138 11-182 1181-1318(1321)
2 4f4c_A Multidrug resistance pr 100.0 1.1E-32 3.6E-37 281.9 0.4 137 11-181 518-654 (1321)
3 3nh6_A ATP-binding cassette SU 100.0 1.1E-32 3.8E-37 244.1 -0.8 133 14-180 157-289 (306)
4 4a82_A Cystic fibrosis transme 100.0 7.6E-31 2.6E-35 248.2 2.2 132 15-180 445-576 (578)
5 3qf4_A ABC transporter, ATP-bi 100.0 9.8E-31 3.4E-35 248.2 1.8 133 13-179 445-577 (587)
6 3qf4_B Uncharacterized ABC tra 100.0 8.5E-31 2.9E-35 248.9 1.0 136 11-180 455-590 (598)
7 3b5x_A Lipid A export ATP-bind 100.0 1.4E-30 5E-35 246.3 2.3 135 12-180 445-579 (582)
8 3b60_A Lipid A export ATP-bind 100.0 1.4E-30 4.7E-35 246.4 1.1 133 13-179 446-578 (582)
9 2yl4_A ATP-binding cassette SU 100.0 4.3E-30 1.5E-34 243.6 0.4 133 14-180 450-583 (595)
10 2ff7_A Alpha-hemolysin translo 99.9 2.5E-29 8.5E-34 215.5 3.3 126 18-177 116-242 (247)
11 1mv5_A LMRA, multidrug resista 99.9 2.1E-29 7.3E-34 214.8 1.8 128 17-178 109-236 (243)
12 2ghi_A Transport protein; mult 99.9 7.7E-29 2.6E-33 213.9 4.2 125 19-177 127-251 (260)
13 2cbz_A Multidrug resistance-as 99.9 8.2E-29 2.8E-33 210.9 3.0 130 18-178 98-227 (237)
14 3g5u_A MCG1178, multidrug resi 99.9 4.5E-29 1.5E-33 254.6 0.7 134 15-182 1139-1272(1284)
15 2pze_A Cystic fibrosis transme 99.9 2.2E-28 7.7E-33 207.0 2.9 122 20-174 103-224 (229)
16 2ixe_A Antigen peptide transpo 99.9 4E-28 1.4E-32 210.7 3.9 124 24-180 133-257 (271)
17 3gd7_A Fusion complex of cysti 99.9 6.9E-28 2.4E-32 219.7 2.8 122 15-170 123-244 (390)
18 3g5u_A MCG1178, multidrug resi 99.9 2.9E-28 9.7E-33 248.7 0.3 131 13-177 492-622 (1284)
19 3gfo_A Cobalt import ATP-bindi 99.9 2.5E-26 8.6E-31 200.3 5.3 101 36-169 132-234 (275)
20 3tui_C Methionine import ATP-b 99.9 6.9E-27 2.3E-31 211.7 1.5 101 37-170 153-255 (366)
21 2bbs_A Cystic fibrosis transme 99.9 1.1E-26 3.7E-31 203.9 1.8 116 21-169 133-248 (290)
22 3fvq_A Fe(3+) IONS import ATP- 99.9 8.8E-27 3E-31 210.5 0.5 103 36-170 127-230 (359)
23 3tif_A Uncharacterized ABC tra 99.9 3.2E-26 1.1E-30 194.6 3.7 93 42-167 140-233 (235)
24 1g6h_A High-affinity branched- 99.9 9E-26 3.1E-30 194.0 5.2 97 36-165 142-239 (257)
25 1b0u_A Histidine permease; ABC 99.9 8.6E-26 2.9E-30 195.0 4.4 101 36-169 141-243 (262)
26 2olj_A Amino acid ABC transpor 99.9 1.5E-25 5.1E-30 194.1 5.0 101 36-169 148-249 (263)
27 1ji0_A ABC transporter; ATP bi 99.9 8.3E-26 2.8E-30 192.5 3.1 99 37-168 129-228 (240)
28 3rlf_A Maltose/maltodextrin im 99.9 1.8E-25 6.3E-30 203.3 5.2 102 36-170 122-225 (381)
29 4g1u_C Hemin import ATP-bindin 99.9 1.5E-25 5.3E-30 194.0 4.0 97 40-169 134-238 (266)
30 1v43_A Sugar-binding transport 99.9 5.7E-26 2E-30 205.9 1.1 102 36-170 130-233 (372)
31 2onk_A Molybdate/tungstate ABC 99.9 1.7E-25 5.9E-30 191.1 3.7 102 36-170 115-218 (240)
32 2pcj_A ABC transporter, lipopr 99.9 2E-25 6.9E-30 188.3 3.8 94 36-162 129-222 (224)
33 2yyz_A Sugar ABC transporter, 99.9 4.3E-26 1.5E-30 205.8 -0.6 102 36-170 122-225 (359)
34 1vpl_A ABC transporter, ATP-bi 99.9 3.7E-25 1.3E-29 190.8 5.3 101 36-169 135-236 (256)
35 2yz2_A Putative ABC transporte 99.9 4.8E-25 1.6E-29 190.5 4.9 99 39-170 130-229 (266)
36 1oxx_K GLCV, glucose, ABC tran 99.9 5.6E-25 1.9E-29 198.0 5.1 102 36-170 129-232 (353)
37 2it1_A 362AA long hypothetical 99.9 5.7E-25 2E-29 198.7 5.1 102 36-170 122-225 (362)
38 2ihy_A ABC transporter, ATP-bi 99.9 5.2E-25 1.8E-29 192.0 4.5 100 36-168 150-252 (279)
39 1z47_A CYSA, putative ABC-tran 99.9 5.4E-25 1.9E-29 198.4 4.4 102 36-170 134-237 (355)
40 1g29_1 MALK, maltose transport 99.9 6.9E-25 2.4E-29 198.7 5.0 102 36-170 128-231 (372)
41 2d2e_A SUFC protein; ABC-ATPas 99.9 1.6E-24 5.3E-29 185.6 7.0 93 40-165 135-230 (250)
42 2zu0_C Probable ATP-dependent 99.9 1.2E-24 4E-29 188.3 6.0 94 42-168 158-254 (267)
43 3d31_A Sulfate/molybdate ABC t 99.9 5.9E-25 2E-29 197.6 4.1 101 37-170 117-219 (348)
44 2nq2_C Hypothetical ABC transp 99.9 9.6E-25 3.3E-29 187.7 4.7 99 36-168 117-217 (253)
45 2qi9_C Vitamin B12 import ATP- 99.9 1.2E-24 4.1E-29 186.9 4.8 100 36-168 115-222 (249)
46 2pjz_A Hypothetical protein ST 99.9 5.8E-24 2E-28 184.1 6.3 98 36-169 116-216 (263)
47 3ux8_A Excinuclease ABC, A sub 99.9 9E-23 3.1E-27 195.7 4.7 101 40-173 536-645 (670)
48 3ux8_A Excinuclease ABC, A sub 99.9 1.9E-22 6.6E-27 193.3 5.0 98 41-171 196-301 (670)
49 3pih_A Uvrabc system protein A 99.8 1.9E-22 6.6E-27 200.2 4.2 103 40-175 798-909 (916)
50 3j16_B RLI1P; ribosome recycli 99.8 5.2E-22 1.8E-26 189.8 2.7 98 39-169 459-560 (608)
51 1sgw_A Putative ABC transporte 99.8 9.6E-22 3.3E-26 165.5 1.1 87 36-157 123-210 (214)
52 3qf7_A RAD50; ABC-ATPase, ATPa 99.8 4.3E-21 1.5E-25 172.5 4.7 85 42-159 274-364 (365)
53 1yqt_A RNAse L inhibitor; ATP- 99.8 2.7E-21 9.1E-26 182.2 3.2 100 36-168 390-493 (538)
54 3pih_A Uvrabc system protein A 99.8 9.9E-21 3.4E-25 187.9 5.6 97 41-170 458-562 (916)
55 3ozx_A RNAse L inhibitor; ATP 99.8 5E-21 1.7E-25 180.5 3.3 98 36-166 374-475 (538)
56 1f2t_B RAD50 ABC-ATPase; DNA d 99.8 1.6E-20 5.4E-25 149.9 5.6 79 42-153 52-136 (148)
57 3bk7_A ABC transporter ATP-bin 99.8 5.8E-21 2E-25 182.4 3.2 100 36-168 460-563 (607)
58 2r6f_A Excinuclease ABC subuni 99.8 1.4E-20 4.9E-25 187.1 4.9 105 36-173 833-947 (972)
59 2vf7_A UVRA2, excinuclease ABC 99.8 1.1E-20 3.8E-25 186.3 3.8 99 40-171 723-830 (842)
60 2ygr_A Uvrabc system protein A 99.8 2.3E-20 7.9E-25 186.0 4.6 105 36-173 851-965 (993)
61 1yqt_A RNAse L inhibitor; ATP- 99.8 2E-20 6.8E-25 176.2 3.2 87 37-156 148-235 (538)
62 3bk7_A ABC transporter ATP-bin 99.8 4E-20 1.4E-24 176.6 3.8 88 36-156 217-305 (607)
63 2r6f_A Excinuclease ABC subuni 99.8 5.5E-20 1.9E-24 182.9 4.3 96 41-169 498-601 (972)
64 3j16_B RLI1P; ribosome recycli 99.8 5.8E-20 2E-24 175.6 4.3 90 36-158 210-300 (608)
65 3ozx_A RNAse L inhibitor; ATP 99.8 5.6E-20 1.9E-24 173.4 3.7 87 37-157 128-215 (538)
66 2ygr_A Uvrabc system protein A 99.8 7.8E-20 2.7E-24 182.3 4.6 101 36-169 509-618 (993)
67 2iw3_A Elongation factor 3A; a 99.8 9.4E-20 3.2E-24 181.9 5.0 94 40-169 541-636 (986)
68 2vf7_A UVRA2, excinuclease ABC 99.8 1.4E-19 4.9E-24 178.3 4.8 101 36-169 367-476 (842)
69 4aby_A DNA repair protein RECN 99.7 7.7E-19 2.6E-23 157.6 5.5 79 48-160 296-380 (415)
70 2iw3_A Elongation factor 3A; a 99.7 5.4E-19 1.9E-23 176.4 3.5 85 42-162 896-981 (986)
71 1e69_A Chromosome segregation 99.7 2.9E-17 9.9E-22 144.4 5.2 82 43-158 215-302 (322)
72 4ad8_A DNA repair protein RECN 99.7 2.5E-17 8.7E-22 153.5 4.7 78 44-155 393-473 (517)
73 3qkt_A DNA double-strand break 99.6 6.8E-17 2.3E-21 143.1 4.8 78 43-153 244-327 (339)
74 3kta_B Chromosome segregation 99.6 8.3E-17 2.8E-21 131.5 4.1 80 43-156 60-145 (173)
75 2o5v_A DNA replication and rep 99.6 5.6E-17 1.9E-21 146.1 3.2 85 43-166 260-354 (359)
76 2npi_A Protein CLP1; CLP1-PCF1 99.6 1.4E-16 4.8E-21 147.7 2.2 85 45-167 233-337 (460)
77 4gp7_A Metallophosphoesterase; 99.6 3.4E-16 1.2E-20 125.6 2.4 97 35-149 72-168 (171)
78 1w1w_A Structural maintenance 99.5 7.7E-15 2.6E-19 133.4 4.4 77 45-154 331-411 (430)
79 1ye8_A Protein THEP1, hypothet 99.5 4.7E-15 1.6E-19 120.8 1.1 50 39-88 68-124 (178)
80 3auy_A DNA double-strand break 99.5 2.1E-14 7.3E-19 128.5 5.0 76 45-154 278-360 (371)
81 2v9p_A Replication protein E1; 99.4 2.4E-15 8.1E-20 133.0 -2.8 92 26-181 184-276 (305)
82 3b85_A Phosphate starvation-in 99.4 9.2E-14 3.1E-18 116.0 1.8 66 51-158 108-173 (208)
83 1tf7_A KAIC; homohexamer, hexa 99.3 6.4E-13 2.2E-17 124.0 4.9 87 36-156 342-444 (525)
84 3thx_A DNA mismatch repair pro 99.0 3.8E-11 1.3E-15 119.7 0.8 90 46-167 720-812 (934)
85 2pt7_A CAG-ALFA; ATPase, prote 98.9 1.1E-10 3.6E-15 103.6 0.7 71 50-161 225-296 (330)
86 1tq4_A IIGP1, interferon-induc 98.8 2.2E-10 7.5E-15 105.0 -2.0 42 48-89 155-208 (413)
87 3thx_B DNA mismatch repair pro 98.8 1.1E-09 3.8E-14 109.0 1.0 82 43-157 731-814 (918)
88 1cr0_A DNA primase/helicase; R 98.7 5.4E-09 1.8E-13 89.6 3.5 78 46-157 128-237 (296)
89 2o8b_B DNA mismatch repair pro 98.7 2.7E-09 9.1E-14 107.3 1.1 87 45-165 849-939 (1022)
90 3b9q_A Chloroplast SRP recepto 98.7 4.5E-09 1.5E-13 92.2 1.2 74 43-158 200-285 (302)
91 2ehv_A Hypothetical protein PH 98.6 2.7E-08 9.1E-13 81.8 5.0 61 61-154 131-207 (251)
92 2i3b_A HCR-ntpase, human cance 98.6 1.4E-09 4.9E-14 89.2 -3.4 84 39-160 75-168 (189)
93 2og2_A Putative signal recogni 98.6 1E-08 3.4E-13 92.3 1.5 74 43-158 257-342 (359)
94 2w0m_A SSO2452; RECA, SSPF, un 98.5 4.1E-08 1.4E-12 79.4 3.9 76 48-156 104-193 (235)
95 1znw_A Guanylate kinase, GMP k 98.4 2.7E-09 9.3E-14 87.2 -5.4 60 61-153 137-202 (207)
96 1z6g_A Guanylate kinase; struc 98.4 1.4E-09 4.9E-14 90.2 -7.3 44 46-89 121-169 (218)
97 1ewq_A DNA mismatch repair pro 98.4 3.3E-08 1.1E-12 96.7 0.9 64 47-146 635-704 (765)
98 2dpy_A FLII, flagellum-specifi 98.4 1.1E-08 3.7E-13 94.2 -2.7 81 44-168 255-344 (438)
99 2f1r_A Molybdopterin-guanine d 98.4 2.1E-08 7.2E-13 81.1 -1.5 42 25-70 84-126 (171)
100 4a74_A DNA repair and recombin 98.4 4.5E-07 1.5E-11 73.5 5.8 81 53-156 106-201 (231)
101 1tf7_A KAIC; homohexamer, hexa 98.4 5E-08 1.7E-12 90.8 0.1 67 58-157 130-212 (525)
102 2obl_A ESCN; ATPase, hydrolase 98.4 1.8E-08 6.2E-13 90.0 -3.0 81 43-167 167-254 (347)
103 2cvh_A DNA repair and recombin 98.3 3.3E-07 1.1E-11 73.9 4.7 80 47-156 84-186 (220)
104 2eyu_A Twitching motility prot 98.3 8.9E-08 3.1E-12 82.1 0.8 61 54-154 87-147 (261)
105 3aez_A Pantothenate kinase; tr 98.3 4E-08 1.4E-12 86.4 -1.6 37 44-80 173-209 (312)
106 3sop_A Neuronal-specific septi 98.3 6.2E-08 2.1E-12 83.4 -0.4 35 45-82 96-130 (270)
107 1wb9_A DNA mismatch repair pro 98.3 7.6E-08 2.6E-12 94.6 -0.7 84 46-162 668-752 (800)
108 1nlf_A Regulatory protein REPA 98.2 3.8E-07 1.3E-11 77.6 2.6 39 42-83 113-153 (279)
109 3jvv_A Twitching mobility prot 98.1 2.8E-07 9.7E-12 82.6 -0.3 59 57-155 188-246 (356)
110 1pzn_A RAD51, DNA repair and r 98.1 1.6E-06 5.4E-11 77.1 3.4 95 49-166 208-313 (349)
111 3asz_A Uridine kinase; cytidin 97.9 1.9E-07 6.5E-12 75.6 -5.1 46 43-88 85-141 (211)
112 2bdt_A BH3686; alpha-beta prot 97.8 7.8E-07 2.7E-11 70.9 -2.9 80 49-167 96-183 (189)
113 1odf_A YGR205W, hypothetical 3 97.8 4.2E-07 1.4E-11 79.1 -5.2 59 22-82 103-169 (290)
114 1pui_A ENGB, probable GTP-bind 97.7 6.4E-06 2.2E-10 65.8 0.9 51 41-91 143-194 (210)
115 2qnr_A Septin-2, protein NEDD5 97.7 4E-06 1.4E-10 72.9 -0.3 36 43-82 109-145 (301)
116 2jeo_A Uridine-cytidine kinase 97.4 1.3E-05 4.3E-10 66.9 -1.0 35 45-80 114-148 (245)
117 2eyu_A Twitching motility prot 97.3 2.1E-06 7E-11 73.5 -8.0 47 33-81 158-206 (261)
118 1n0w_A DNA repair protein RAD5 97.2 0.00037 1.3E-08 56.6 5.3 23 59-81 111-135 (243)
119 2ewv_A Twitching motility prot 97.2 8.7E-06 3E-10 73.0 -5.5 47 33-81 269-317 (372)
120 1lw7_A Transcriptional regulat 97.1 1.7E-05 5.9E-10 70.2 -3.9 87 46-167 257-354 (365)
121 3ec2_A DNA replication protein 97.0 0.00036 1.2E-08 54.8 3.2 29 60-88 95-124 (180)
122 3szr_A Interferon-induced GTP- 97.0 0.00011 3.9E-09 69.8 0.1 87 50-167 131-236 (608)
123 1rj9_A FTSY, signal recognitio 96.9 0.00026 8.9E-09 61.8 1.7 35 49-88 204-238 (304)
124 2qag_C Septin-7; cell cycle, c 96.9 0.00011 3.6E-09 67.2 -1.1 36 47-82 118-157 (418)
125 2ewv_A Twitching motility prot 96.9 0.00015 5.1E-09 64.9 -0.1 58 55-152 199-256 (372)
126 1sxj_E Activator 1 40 kDa subu 96.5 0.0011 3.9E-08 57.0 3.0 47 62-143 131-177 (354)
127 2kjq_A DNAA-related protein; s 96.5 0.001 3.5E-08 51.8 2.1 27 61-88 79-105 (149)
128 2bbw_A Adenylate kinase 4, AK4 96.1 0.00054 1.8E-08 56.8 -1.6 40 42-88 147-191 (246)
129 1lw7_A Transcriptional regulat 96.0 0.0037 1.3E-07 55.0 3.5 46 43-88 292-342 (365)
130 3lda_A DNA repair protein RAD5 95.8 0.0075 2.6E-07 54.6 4.6 28 54-81 260-289 (400)
131 1nij_A Hypothetical protein YJ 95.8 0.00058 2E-08 59.4 -2.6 26 47-74 141-166 (318)
132 3c8u_A Fructokinase; YP_612366 95.2 0.00023 8E-09 57.6 -6.8 48 28-75 90-140 (208)
133 2dr3_A UPF0273 protein PH0284; 95.2 0.031 1.1E-06 45.0 5.9 67 56-154 117-196 (247)
134 2ius_A DNA translocase FTSK; n 95.2 0.0047 1.6E-07 57.8 1.0 34 47-80 268-312 (512)
135 2zr9_A Protein RECA, recombina 95.1 0.02 6.9E-07 50.6 4.8 26 53-78 125-152 (349)
136 1s96_A Guanylate kinase, GMP k 94.9 0.0094 3.2E-07 49.3 2.0 60 59-168 101-160 (219)
137 1udx_A The GTP-binding protein 94.6 0.0069 2.4E-07 55.2 0.5 36 44-83 249-284 (416)
138 1zp6_A Hypothetical protein AT 94.6 0.011 3.9E-07 46.1 1.6 27 43-69 105-131 (191)
139 1ni3_A YCHF GTPase, YCHF GTP-b 94.5 0.00099 3.4E-08 60.4 -5.5 64 65-163 139-208 (392)
140 1lvg_A Guanylate kinase, GMP k 94.2 0.0014 4.7E-08 52.9 -4.8 32 58-89 116-148 (198)
141 2xau_A PRE-mRNA-splicing facto 93.8 0.018 6E-07 56.2 1.4 40 44-83 187-227 (773)
142 2r6a_A DNAB helicase, replicat 93.5 0.037 1.3E-06 50.2 3.0 32 47-80 295-328 (454)
143 3euj_A Chromosome partition pr 93.1 0.091 3.1E-06 48.8 4.9 49 39-88 371-436 (483)
144 2ce7_A Cell division protein F 91.4 0.15 5.2E-06 47.1 4.2 27 50-76 93-119 (476)
145 1oix_A RAS-related protein RAB 91.2 0.093 3.2E-06 41.1 2.2 43 47-91 145-187 (191)
146 1vma_A Cell division protein F 91.0 0.085 2.9E-06 45.8 2.0 30 47-76 165-197 (306)
147 1jcn_A Inosine monophosphate d 91.0 0.012 4.2E-07 54.4 -3.6 70 60-167 28-101 (514)
148 2oap_1 GSPE-2, type II secreti 90.3 0.0083 2.9E-07 55.9 -5.4 57 44-145 397-455 (511)
149 2px0_A Flagellar biosynthesis 88.9 0.081 2.8E-06 45.6 0.1 28 55-86 174-201 (296)
150 2x8a_A Nuclear valosin-contain 88.6 0.015 5E-07 49.5 -4.8 33 42-76 132-164 (274)
151 1ls1_A Signal recognition part 88.2 0.23 7.7E-06 42.6 2.5 34 53-86 168-202 (295)
152 2gza_A Type IV secretion syste 87.1 0.14 4.6E-06 45.3 0.4 70 49-158 236-305 (361)
153 2z4s_A Chromosomal replication 84.8 0.31 1.1E-05 44.0 1.6 16 65-80 194-209 (440)
154 4a1f_A DNAB helicase, replicat 82.8 0.71 2.4E-05 40.7 3.0 34 47-80 109-142 (338)
155 1p9r_A General secretion pathw 81.5 0.084 2.9E-06 47.9 -3.6 26 44-71 290-315 (418)
156 2f9l_A RAB11B, member RAS onco 79.4 0.86 2.9E-05 35.4 2.1 37 54-92 128-164 (199)
157 2e87_A Hypothetical protein PH 77.3 0.73 2.5E-05 40.1 1.2 43 46-89 230-273 (357)
158 1jjv_A Dephospho-COA kinase; P 74.4 2 7E-05 33.5 3.0 70 48-154 60-132 (206)
159 2rcn_A Probable GTPase ENGC; Y 74.0 0.5 1.7E-05 42.1 -0.8 28 36-64 303-330 (358)
160 1g5t_A COB(I)alamin adenosyltr 72.4 3.1 0.00011 34.0 3.7 69 54-156 107-181 (196)
161 1iy2_A ATP-dependent metallopr 72.0 0.18 6.1E-06 42.1 -4.0 30 44-75 166-195 (278)
162 1ixz_A ATP-dependent metallopr 71.9 0.21 7.2E-06 40.8 -3.5 30 44-75 142-171 (254)
163 2r8r_A Sensor protein; KDPD, P 71.6 2.9 9.8E-05 35.0 3.4 29 48-76 67-95 (228)
164 3e70_C DPA, signal recognition 71.4 1.2 4.3E-05 38.8 1.2 29 130-158 269-307 (328)
165 2qag_B Septin-6, protein NEDD5 71.0 1.9 6.6E-05 39.2 2.4 34 56-89 167-200 (427)
166 3bh0_A DNAB-like replicative h 68.2 4.7 0.00016 34.3 4.2 33 48-80 134-166 (315)
167 2qm8_A GTPase/ATPase; G protei 66.1 1 3.6E-05 39.1 -0.4 42 46-91 209-256 (337)
168 3k1j_A LON protease, ATP-depen 65.2 3 0.0001 39.0 2.5 43 46-89 182-224 (604)
169 2qby_A CDC6 homolog 1, cell di 63.3 4.5 0.00016 34.0 3.0 15 66-80 129-143 (386)
170 1fnn_A CDC6P, cell division co 61.4 3.6 0.00012 34.9 2.1 22 64-86 124-145 (389)
171 2z43_A DNA repair and recombin 61.0 8.8 0.0003 32.7 4.5 27 54-80 189-218 (324)
172 3szr_A Interferon-induced GTP- 55.5 7.3 0.00025 36.6 3.3 46 38-83 149-201 (608)
173 2w58_A DNAI, primosome compone 50.3 9.9 0.00034 29.3 2.8 13 62-74 112-124 (202)
174 1v5w_A DMC1, meiotic recombina 47.4 20 0.00068 30.8 4.5 27 54-80 204-234 (343)
175 2qtf_A Protein HFLX, GTP-bindi 46.1 6.8 0.00023 34.4 1.3 47 41-91 298-349 (364)
176 1l8q_A Chromosomal replication 41.4 23 0.00079 29.5 3.9 14 63-76 96-109 (324)
177 1b9m_A Protein (mode); DNA-bin 40.6 8.3 0.00028 31.5 1.0 31 39-69 65-95 (265)
178 3h4m_A Proteasome-activating n 39.0 43 0.0015 27.0 5.1 22 57-78 102-123 (285)
179 3b9p_A CG5977-PA, isoform A; A 38.1 9.1 0.00031 31.4 0.8 31 50-80 98-128 (297)
180 1u94_A RECA protein, recombina 37.2 31 0.0011 30.1 4.2 25 54-78 128-154 (356)
181 2yhs_A FTSY, cell division pro 36.4 16 0.00055 33.9 2.3 29 53-81 398-428 (503)
182 4ag6_A VIRB4 ATPase, type IV s 35.6 30 0.001 29.8 3.8 20 124-143 291-310 (392)
183 1svm_A Large T antigen; AAA+ f 33.5 1.6 5.3E-05 39.0 -5.0 38 41-78 276-314 (377)
184 3bos_A Putative DNA replicatio 31.8 32 0.0011 26.5 3.0 13 64-76 103-115 (242)
185 2b8t_A Thymidine kinase; deoxy 30.7 28 0.00095 28.4 2.6 25 129-153 115-150 (223)
186 2qgz_A Helicase loader, putati 29.0 26 0.00088 29.7 2.2 12 63-74 212-223 (308)
187 2orv_A Thymidine kinase; TP4A 27.4 76 0.0026 26.4 4.8 18 62-79 87-104 (234)
188 3bgw_A DNAB-like replicative h 27.0 63 0.0021 28.9 4.5 33 48-80 263-295 (444)
189 3lnc_A Guanylate kinase, GMP k 26.4 2.6 9E-05 33.7 -4.4 37 131-167 186-223 (231)
190 2dhr_A FTSH; AAA+ protein, hex 24.3 6.1 0.00021 36.5 -2.8 30 45-76 158-187 (499)
191 1njg_A DNA polymerase III subu 22.5 60 0.0021 24.4 3.1 17 65-82 126-142 (250)
192 3t34_A Dynamin-related protein 21.1 72 0.0025 27.1 3.6 25 48-72 155-179 (360)
193 2hi6_A UPF0107 protein AF0055; 20.9 39 0.0013 26.2 1.6 36 135-170 39-76 (141)
194 1in4_A RUVB, holliday junction 20.4 11 0.00038 32.0 -1.8 17 43-59 158-174 (334)
No 1
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.97 E-value=2.9e-33 Score=285.99 Aligned_cols=138 Identities=28% Similarity=0.439 Sum_probs=116.2
Q ss_pred CCCCCCCcceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhh
Q psy12535 11 GHPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDC 90 (209)
Q Consensus 11 ~~~~~~~~~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~ 90 (209)
+++++.++++++.|++++++..+|.||+|.||++|.+|||||||||+|||||+++|+|||||||||+||+++.+.+.+.+
T Consensus 1181 ~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l 1260 (1321)
T 4f4c_A 1181 SVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEAL 1260 (1321)
T ss_dssp TSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHH
Confidence 45667788899999999999999999999999999999999999999999999999999999999999999988886643
Q ss_pred hhccccCCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeeccceeecchhhHHhhcc
Q psy12535 91 ITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASG 170 (209)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~~~~ 170 (209)
. + ..+++|+|+|+|+++.+..||+|+||++|+|+|+|+|++|++++
T Consensus 1261 ~---------------------------------~-~~~~~TvI~IAHRLsTi~~aD~I~Vld~G~IvE~Gth~eLl~~~ 1306 (1321)
T 4f4c_A 1261 D---------------------------------R-AREGRTCIVIAHRLNTVMNADCIAVVSNGTIIEKGTHTQLMSEK 1306 (1321)
T ss_dssp T---------------------------------T-TSSSSEEEEECSSSSTTTTCSEEEEESSSSEEEEECHHHHHHCC
T ss_pred H---------------------------------H-HcCCCEEEEeccCHHHHHhCCEEEEEECCEEEEECCHHHHHhCC
Confidence 2 1 23689999999999999999999999999999999999999998
Q ss_pred CCchhccCCCch
Q psy12535 171 LDFTQLLDAPEE 182 (209)
Q Consensus 171 ~~~~~~~~~~~~ 182 (209)
+.|.++++.+..
T Consensus 1307 g~y~~L~~~Q~~ 1318 (1321)
T 4f4c_A 1307 GAYYKLTQKQMT 1318 (1321)
T ss_dssp ------------
T ss_pred cHHHHHHHHHHh
Confidence 899999987754
No 2
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.97 E-value=1.1e-32 Score=281.87 Aligned_cols=137 Identities=29% Similarity=0.463 Sum_probs=122.4
Q ss_pred CCCCCCCcceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhh
Q psy12535 11 GHPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDC 90 (209)
Q Consensus 11 ~~~~~~~~~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~ 90 (209)
..+++++.++++.|++++++..+|+||+|.||++|.+|||||||||+||||++++|+|||||||||+||++++..+.+.
T Consensus 518 ~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~- 596 (1321)
T 4f4c_A 518 GITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQA- 596 (1321)
T ss_dssp TCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHH-
T ss_pred cchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHH-
Confidence 4566778888888999999999999999999999999999999999999999999999999999999999986655543
Q ss_pred hhccccCCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeeccceeecchhhHHhhcc
Q psy12535 91 ITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASG 170 (209)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~~~~ 170 (209)
+.. ..+++|+|+|||+++.+..||+|++|++|+|+++|+++||++.+
T Consensus 597 l~~---------------------------------~~~~~T~iiiaHrls~i~~aD~Iivl~~G~ive~Gth~eL~~~~ 643 (1321)
T 4f4c_A 597 LDK---------------------------------AAKGRTTIIIAHRLSTIRNADLIISCKNGQVVEVGDHRALMAQQ 643 (1321)
T ss_dssp HHH---------------------------------HHTTSEEEEECSCTTTTTTCSEEEEEETTEEEEEECHHHHHTTT
T ss_pred HHH---------------------------------HhCCCEEEEEcccHHHHHhCCEEEEeeCCeeeccCCHHHHHHhh
Confidence 221 23689999999999999999999999999999999999999998
Q ss_pred CCchhccCCCc
Q psy12535 171 LDFTQLLDAPE 181 (209)
Q Consensus 171 ~~~~~~~~~~~ 181 (209)
+.|.+++..+.
T Consensus 644 g~y~~l~~~q~ 654 (1321)
T 4f4c_A 644 GLYYDLVTAQT 654 (1321)
T ss_dssp CHHHHHHHHHH
T ss_pred hHHHHHHHhhh
Confidence 88888876553
No 3
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.97 E-value=1.1e-32 Score=244.06 Aligned_cols=133 Identities=22% Similarity=0.492 Sum_probs=117.7
Q ss_pred CCCCcceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhc
Q psy12535 14 DPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITG 93 (209)
Q Consensus 14 ~~~~~~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~ 93 (209)
.+.+.++++.+++.+++..+|.|++|.+++++.+|||||||||+|||||+++|+|||||||||+||+.+...+++.+
T Consensus 157 ~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l--- 233 (306)
T 3nh6_A 157 NDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASL--- 233 (306)
T ss_dssp HHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHH---
T ss_pred HHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHH---
Confidence 34456677888899999999999999999999999999999999999999999999999999999999988886632
Q ss_pred cccCCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeeccceeecchhhHHhhccCCc
Q psy12535 94 LHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGLDF 173 (209)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~~~~~~~ 173 (209)
... .+++|+|+|||+++.+..||+|++|++|+|++.|+++++++....|
T Consensus 234 ------------------------------~~l-~~~~Tvi~itH~l~~~~~aD~i~vl~~G~iv~~G~~~el~~~~~~y 282 (306)
T 3nh6_A 234 ------------------------------AKV-CANRTTIVVAHRLSTVVNADQILVIKDGCIVERGRHEALLSRGGVY 282 (306)
T ss_dssp ------------------------------HHH-HTTSEEEEECCSHHHHHTCSEEEEEETTEEEEEECHHHHHHHTSHH
T ss_pred ------------------------------HHH-cCCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHHHHHhcChHH
Confidence 222 2478999999999999889999999999999999999999888778
Q ss_pred hhccCCC
Q psy12535 174 TQLLDAP 180 (209)
Q Consensus 174 ~~~~~~~ 180 (209)
.++|..+
T Consensus 283 ~~l~~~q 289 (306)
T 3nh6_A 283 ADMWQLQ 289 (306)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8877544
No 4
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.96 E-value=7.6e-31 Score=248.22 Aligned_cols=132 Identities=28% Similarity=0.493 Sum_probs=116.1
Q ss_pred CCCcceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhcc
Q psy12535 15 PNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGL 94 (209)
Q Consensus 15 ~~~~~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~ 94 (209)
++..++++.+++++++..+|.|++|.+|++|.+|||||||||+|||||+++|++||||||||+||+.++..+.+.+
T Consensus 445 ~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l---- 520 (578)
T 4a82_A 445 EEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEAL---- 520 (578)
T ss_dssp HHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHH----
T ss_pred HHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHH----
Confidence 3455667777888999999999999999999999999999999999999999999999999999999887776532
Q ss_pred ccCCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeeccceeecchhhHHhhccCCch
Q psy12535 95 HTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGLDFT 174 (209)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~~~~~~~~ 174 (209)
+.. .+++|+|+|||+++.+..||+|++|++|+|++.|+++++.+..+.|.
T Consensus 521 -----------------------------~~~-~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~el~~~~~~~~ 570 (578)
T 4a82_A 521 -----------------------------DVL-SKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQGAYE 570 (578)
T ss_dssp -----------------------------HHH-TTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHHHTTSHHH
T ss_pred -----------------------------HHH-cCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhCCcHHH
Confidence 221 35789999999999998899999999999999999999998877788
Q ss_pred hccCCC
Q psy12535 175 QLLDAP 180 (209)
Q Consensus 175 ~~~~~~ 180 (209)
+++..+
T Consensus 571 ~~~~~q 576 (578)
T 4a82_A 571 HLYSIQ 576 (578)
T ss_dssp HHHTTT
T ss_pred HHHHhh
Confidence 777544
No 5
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.96 E-value=9.8e-31 Score=248.18 Aligned_cols=133 Identities=29% Similarity=0.485 Sum_probs=117.3
Q ss_pred CCCCCcceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhh
Q psy12535 13 PDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCIT 92 (209)
Q Consensus 13 ~~~~~~~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~ 92 (209)
++++..++++.+++++++..+|.|++|.+++++.+|||||||||+|||||+++|+|||||||||+||+.++..+.+.+
T Consensus 445 ~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l-- 522 (587)
T 3qf4_A 445 TDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGL-- 522 (587)
T ss_dssp CHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHH--
T ss_pred CHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHH--
Confidence 334455677788899999999999999999999999999999999999999999999999999999999998887742
Q ss_pred ccccCCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeeccceeecchhhHHhhccCC
Q psy12535 93 GLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGLD 172 (209)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~~~~~~ 172 (209)
++. .+++|+|+|||+++.+..||+|++|++|+|++.|+++++.+....
T Consensus 523 -------------------------------~~~-~~~~tvi~itH~l~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~ 570 (587)
T 3qf4_A 523 -------------------------------KRY-TKGCTTFIITQKIPTALLADKILVLHEGKVAGFGTHKELLEHCKP 570 (587)
T ss_dssp -------------------------------HHH-STTCEEEEEESCHHHHTTSSEEEEEETTEEEEEECHHHHHHHCHH
T ss_pred -------------------------------HHh-CCCCEEEEEecChHHHHhCCEEEEEECCEEEEECCHHHHHhCCcH
Confidence 221 358999999999999988999999999999999999999988777
Q ss_pred chhccCC
Q psy12535 173 FTQLLDA 179 (209)
Q Consensus 173 ~~~~~~~ 179 (209)
|.+++..
T Consensus 571 ~~~~~~~ 577 (587)
T 3qf4_A 571 YREIYES 577 (587)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776643
No 6
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.96 E-value=8.5e-31 Score=248.94 Aligned_cols=136 Identities=24% Similarity=0.427 Sum_probs=120.0
Q ss_pred CCCCCCCcceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhh
Q psy12535 11 GHPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDC 90 (209)
Q Consensus 11 ~~~~~~~~~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~ 90 (209)
..+++.+.++++.+++++++..+|.|++|.+|++|.+|||||||||+|||||+++|+|||||||||+||+.++..+.+.+
T Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l 534 (598)
T 3qf4_B 455 GATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAM 534 (598)
T ss_dssp TCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHH
Confidence 34556677788888999999999999999999999999999999999999999999999999999999999988886632
Q ss_pred hhccccCCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeeccceeecchhhHHhhcc
Q psy12535 91 ITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASG 170 (209)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~~~~ 170 (209)
++. .+++|+|+|||+++.+..||+|++|++|+|++.|+++++.+..
T Consensus 535 ---------------------------------~~~-~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~ 580 (598)
T 3qf4_B 535 ---------------------------------WKL-MEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDELIQKR 580 (598)
T ss_dssp ---------------------------------HHH-HTTSEEEEESCCTTHHHHCSEEEEECSSSEEECSCHHHHHHTT
T ss_pred ---------------------------------HHH-cCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhCC
Confidence 222 2589999999999999889999999999999999999999887
Q ss_pred CCchhccCCC
Q psy12535 171 LDFTQLLDAP 180 (209)
Q Consensus 171 ~~~~~~~~~~ 180 (209)
+.|.+++..+
T Consensus 581 ~~~~~~~~~~ 590 (598)
T 3qf4_B 581 GFYYELFTSQ 590 (598)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 7777776543
No 7
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.96 E-value=1.4e-30 Score=246.30 Aligned_cols=135 Identities=28% Similarity=0.479 Sum_probs=118.4
Q ss_pred CCCCCCcceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhh
Q psy12535 12 HPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCI 91 (209)
Q Consensus 12 ~~~~~~~~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~ 91 (209)
.+++++.++++.+++++++..+|+|++|.+|+++.+|||||||||+|||||+++|+|||||||||+||+.++..+.+.+
T Consensus 445 ~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l- 523 (582)
T 3b5x_A 445 YTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAAL- 523 (582)
T ss_pred CCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHH-
Confidence 3445566788889999999999999999999999999999999999999999999999999999999999988886632
Q ss_pred hccccCCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeeccceeecchhhHHhhccC
Q psy12535 92 TGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGL 171 (209)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~~~~~ 171 (209)
++. .+++|+|+|||+++.+..||+|++|++|++++.|+++++.+...
T Consensus 524 --------------------------------~~~-~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~ 570 (582)
T 3b5x_A 524 --------------------------------DEL-QKNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHADLLAQDG 570 (582)
T ss_pred --------------------------------HHH-cCCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCc
Confidence 222 24899999999999988899999999999999999999998777
Q ss_pred CchhccCCC
Q psy12535 172 DFTQLLDAP 180 (209)
Q Consensus 172 ~~~~~~~~~ 180 (209)
.|.+++..+
T Consensus 571 ~~~~~~~~q 579 (582)
T 3b5x_A 571 AYAQLHRIQ 579 (582)
T ss_pred HHHHHHHHh
Confidence 777776543
No 8
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.96 E-value=1.4e-30 Score=246.43 Aligned_cols=133 Identities=26% Similarity=0.458 Sum_probs=117.3
Q ss_pred CCCCCcceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhh
Q psy12535 13 PDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCIT 92 (209)
Q Consensus 13 ~~~~~~~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~ 92 (209)
+++++.++++.+++++++..+|+|++|.+|+++.+|||||||||+|||||+++|+|||||||||+||+.++..+.+.+
T Consensus 446 ~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l-- 523 (582)
T 3b60_A 446 SREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAAL-- 523 (582)
T ss_dssp CHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHH--
T ss_pred CHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHH--
Confidence 334556778888999999999999999999999999999999999999999999999999999999999988886632
Q ss_pred ccccCCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeeccceeecchhhHHhhccCC
Q psy12535 93 GLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGLD 172 (209)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~~~~~~ 172 (209)
++. .+++|+|+|||+++.+..||+|++|++|++++.|+++++.+....
T Consensus 524 -------------------------------~~~-~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~ 571 (582)
T 3b60_A 524 -------------------------------DEL-QKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQHGV 571 (582)
T ss_dssp -------------------------------HHH-HTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHHHHTSS
T ss_pred -------------------------------HHH-hCCCEEEEEeccHHHHHhCCEEEEEECCEEEEecCHHHHHHcCCH
Confidence 222 248899999999999888999999999999999999999988777
Q ss_pred chhccCC
Q psy12535 173 FTQLLDA 179 (209)
Q Consensus 173 ~~~~~~~ 179 (209)
|.+++..
T Consensus 572 ~~~~~~~ 578 (582)
T 3b60_A 572 YAQLHKM 578 (582)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777643
No 9
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.95 E-value=4.3e-30 Score=243.60 Aligned_cols=133 Identities=31% Similarity=0.519 Sum_probs=106.6
Q ss_pred CCCCcceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhc
Q psy12535 14 DPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITG 93 (209)
Q Consensus 14 ~~~~~~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~ 93 (209)
++++.++++.+++++++..+|.|++|.+|++|.+|||||||||+|||||+++|+|||||||||+||+.++..+.+.+
T Consensus 450 ~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l--- 526 (595)
T 2yl4_A 450 AEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEAL--- 526 (595)
T ss_dssp HHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHH---
T ss_pred HHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHH---
Confidence 34456778888999999999999999999999999999999999999999999999999999999999888876632
Q ss_pred cccCCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeeccceeecchhhHHhhc-cCC
Q psy12535 94 LHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLAS-GLD 172 (209)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~~~-~~~ 172 (209)
++.. +++|+|+|||+++.+..||+|++|++|++++.|+++++.++ ...
T Consensus 527 ------------------------------~~~~-~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~ 575 (595)
T 2yl4_A 527 ------------------------------DRLM-DGRTVLVIAHRLSTIKNANMVAVLDQGKITEYGKHEELLSKPNGI 575 (595)
T ss_dssp ------------------------------HHHH-TTSEEEEECCCHHHHHHSSEEEEEETTEEEEEECSCC------C-
T ss_pred ------------------------------HHHh-cCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhCCChH
Confidence 2222 37899999999999888999999999999999999999874 667
Q ss_pred chhccCCC
Q psy12535 173 FTQLLDAP 180 (209)
Q Consensus 173 ~~~~~~~~ 180 (209)
|.+++..+
T Consensus 576 ~~~~~~~q 583 (595)
T 2yl4_A 576 YRKLMNKQ 583 (595)
T ss_dssp --------
T ss_pred HHHHHHHh
Confidence 77777654
No 10
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.95 E-value=2.5e-29 Score=215.47 Aligned_cols=126 Identities=28% Similarity=0.516 Sum_probs=107.9
Q ss_pred cceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccC
Q psy12535 18 RRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTG 97 (209)
Q Consensus 18 ~~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~ 97 (209)
.++++.+++.+++..+|.|+++.+++++.+|||||||||+|||||+.+|+||||||||++||+.+...+++.
T Consensus 116 ~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~-------- 187 (247)
T 2ff7_A 116 IYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRN-------- 187 (247)
T ss_dssp HHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHH--------
T ss_pred HHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH--------
Confidence 345556678888899999999999999999999999999999999999999999999999999988888663
Q ss_pred CCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeeccceeecchhhHHhhc-cCCchhc
Q psy12535 98 VPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLAS-GLDFTQL 176 (209)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~~~-~~~~~~~ 176 (209)
++.. .+++|||+|||+++.+..||+|++|++|++++.|+++++... ...|.++
T Consensus 188 -------------------------l~~~-~~g~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~l 241 (247)
T 2ff7_A 188 -------------------------MHKI-CKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYL 241 (247)
T ss_dssp -------------------------HHHH-HTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHTSTTCHHHHH
T ss_pred -------------------------HHHH-cCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCchHHHHH
Confidence 2232 248899999999998877999999999999999999999765 3444444
Q ss_pred c
Q psy12535 177 L 177 (209)
Q Consensus 177 ~ 177 (209)
+
T Consensus 242 ~ 242 (247)
T 2ff7_A 242 Y 242 (247)
T ss_dssp H
T ss_pred H
Confidence 3
No 11
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.95 E-value=2.1e-29 Score=214.82 Aligned_cols=128 Identities=23% Similarity=0.483 Sum_probs=108.7
Q ss_pred CcceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhcccc
Q psy12535 17 SRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHT 96 (209)
Q Consensus 17 ~~~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~ 96 (209)
+.++++.+++.+++..+|.|+++.+++++.+|||||||||+|||||+.+|+||||||||++||+.+...+.+.
T Consensus 109 ~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~------- 181 (243)
T 1mv5_A 109 LWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKA------- 181 (243)
T ss_dssp HHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHH-------
T ss_pred HHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHH-------
Confidence 3445555677788899999999999999999999999999999999999999999999999999988888663
Q ss_pred CCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeeccceeecchhhHHhhccCCchhc
Q psy12535 97 GVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGLDFTQL 176 (209)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~~~~~~~~~~ 176 (209)
++... +++|||++||+++.+..||+|++|++|++++.|+++++......+..+
T Consensus 182 --------------------------l~~~~-~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~ 234 (243)
T 1mv5_A 182 --------------------------LDSLM-KGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAKY 234 (243)
T ss_dssp --------------------------HHHHH-TTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHHCHHHHHH
T ss_pred --------------------------HHHhc-CCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHhccHHHHHH
Confidence 33333 588999999999988779999999999999999999987654444444
Q ss_pred cC
Q psy12535 177 LD 178 (209)
Q Consensus 177 ~~ 178 (209)
+.
T Consensus 235 ~~ 236 (243)
T 1mv5_A 235 VS 236 (243)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 12
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.95 E-value=7.7e-29 Score=213.87 Aligned_cols=125 Identities=28% Similarity=0.514 Sum_probs=106.8
Q ss_pred ceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCC
Q psy12535 19 RVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGV 98 (209)
Q Consensus 19 ~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~ 98 (209)
++++.+++.+++..+|.+++|.+++++.+|||||||||+|||||+.+|+||||||||++||+.+...+++.
T Consensus 127 ~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~--------- 197 (260)
T 2ghi_A 127 KATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKA--------- 197 (260)
T ss_dssp HHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHH---------
T ss_pred HHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHH---------
Confidence 34455677777788999999999999999999999999999999999999999999999999988777663
Q ss_pred CCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeeccceeecchhhHHhhccCCchhcc
Q psy12535 99 PRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGLDFTQLL 177 (209)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~~~~~~~~~~~ 177 (209)
+.... +++|||+|||+++.+..||+|++|++|++++.|+++++......|..++
T Consensus 198 ------------------------l~~l~-~~~tviivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~ 251 (260)
T 2ghi_A 198 ------------------------VEDLR-KNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKLNGEYAEMW 251 (260)
T ss_dssp ------------------------HHHHT-TTSEEEEECSSGGGSTTCSEEEEEETTEEEEEECHHHHHHHTSHHHHHH
T ss_pred ------------------------HHHhc-CCCEEEEEcCCHHHHHhCCEEEEEECCEEEEECCHHHHHhcChHHHHHH
Confidence 22322 4789999999999887899999999999999999999987655555554
No 13
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.94 E-value=8.2e-29 Score=210.90 Aligned_cols=130 Identities=53% Similarity=0.910 Sum_probs=107.1
Q ss_pred cceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccC
Q psy12535 18 RRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTG 97 (209)
Q Consensus 18 ~~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~ 97 (209)
.++++.+++.+.+..+|.|++|.+++++.+|||||||||+|||||+.+|+||||||||++||+.+...+++.+...
T Consensus 98 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~---- 173 (237)
T 2cbz_A 98 RSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGP---- 173 (237)
T ss_dssp HHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTST----
T ss_pred HHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHH----
Confidence 3444555566667778889999999999999999999999999999999999999999999999888887643210
Q ss_pred CCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeeccceeecchhhHHhhccCCchhcc
Q psy12535 98 VPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGLDFTQLL 177 (209)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~~~~~~~~~~~ 177 (209)
.. ..+++|||+|||+++.+..||+|++|++|++++.|+++++......|..++
T Consensus 174 --------------------------~~-~~~~~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~~ 226 (237)
T 2cbz_A 174 --------------------------KG-MLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLARDGAFAEFL 226 (237)
T ss_dssp --------------------------TS-TTTTSEEEEECSCSTTGGGSSEEEEEETTEEEEEECHHHHHHHTSHHHHHH
T ss_pred --------------------------Hh-hcCCCEEEEEecChHHHHhCCEEEEEeCCEEEEeCCHHHHhhccHHHHHHH
Confidence 01 124789999999999887799999999999999999999987665565554
Q ss_pred C
Q psy12535 178 D 178 (209)
Q Consensus 178 ~ 178 (209)
.
T Consensus 227 ~ 227 (237)
T 2cbz_A 227 R 227 (237)
T ss_dssp H
T ss_pred H
Confidence 3
No 14
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.94 E-value=4.5e-29 Score=254.60 Aligned_cols=134 Identities=30% Similarity=0.470 Sum_probs=118.1
Q ss_pred CCCcceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhcc
Q psy12535 15 PNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGL 94 (209)
Q Consensus 15 ~~~~~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~ 94 (209)
+.+.++++.+++++++..+|.||+|.+|++|.+|||||||||+|||||+++|+|||||||||+||+.+...+.+.+
T Consensus 1139 ~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l---- 1214 (1284)
T 3g5u_A 1139 EEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEAL---- 1214 (1284)
T ss_dssp HHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHH----
T ss_pred HHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHH----
Confidence 3445567777889999999999999999999999999999999999999999999999999999999888776632
Q ss_pred ccCCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeeccceeecchhhHHhhccCCch
Q psy12535 95 HTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGLDFT 174 (209)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~~~~~~~~ 174 (209)
+. ..+|+|+|+|||+++.+..||+|++|++|+|++.|+++++++..+.|.
T Consensus 1215 -----------------------------~~-~~~~~tvi~isH~l~~i~~~dri~vl~~G~i~~~g~~~~l~~~~g~y~ 1264 (1284)
T 3g5u_A 1215 -----------------------------DK-AREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQKGIYF 1264 (1284)
T ss_dssp -----------------------------HH-HSSSSCEEEECSCTTGGGSCSEEEEEETBEEEEEECHHHHHHSCSHHH
T ss_pred -----------------------------HH-hCCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhCCCHHH
Confidence 22 235899999999999998899999999999999999999999988888
Q ss_pred hccCCCch
Q psy12535 175 QLLDAPEE 182 (209)
Q Consensus 175 ~~~~~~~~ 182 (209)
+++..+..
T Consensus 1265 ~l~~~q~~ 1272 (1284)
T 3g5u_A 1265 SMVSVQAG 1272 (1284)
T ss_dssp HHHHHHC-
T ss_pred HHHHHHhh
Confidence 88865543
No 15
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.94 E-value=2.2e-28 Score=207.03 Aligned_cols=122 Identities=43% Similarity=0.774 Sum_probs=102.4
Q ss_pred eeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCC
Q psy12535 20 VVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVP 99 (209)
Q Consensus 20 ~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~ 99 (209)
+++.+++.+.+..+|.+++|.+++++.+|||||||||+|||||+.+|++|||||||++||+.+...+++.++..
T Consensus 103 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~------ 176 (229)
T 2pze_A 103 VIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCK------ 176 (229)
T ss_dssp HHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCC------
T ss_pred HHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHH------
Confidence 34445667778888989999999999999999999999999999999999999999999999888887643211
Q ss_pred CccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeeccceeecchhhHHhhccCCch
Q psy12535 100 RFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGLDFT 174 (209)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~~~~~~~~ 174 (209)
..+++|||++||+++.+..||+|++|++|++++.|+++++......+.
T Consensus 177 ---------------------------~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~ 224 (229)
T 2pze_A 177 ---------------------------LMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLQPDFS 224 (229)
T ss_dssp ---------------------------CTTTSEEEEECCCHHHHHHCSEEEEEETTEEEEEECHHHHHTC--CHH
T ss_pred ---------------------------hhCCCEEEEEcCChHHHHhCCEEEEEECCEEEEECCHHHHHhcChHHH
Confidence 124789999999999887799999999999999999999876544443
No 16
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.94 E-value=4e-28 Score=210.67 Aligned_cols=124 Identities=32% Similarity=0.467 Sum_probs=105.7
Q ss_pred eechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccc
Q psy12535 24 CALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDS 103 (209)
Q Consensus 24 ~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~ 103 (209)
.++.+++..+|.|+++.+++.+.+|||||||||+|||||+.+|+||||||||++||+.+...+++.+
T Consensus 133 ~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l------------- 199 (271)
T 2ixe_A 133 SGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLL------------- 199 (271)
T ss_dssp HTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHH-------------
T ss_pred HhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHH-------------
Confidence 4556678888889999999999999999999999999999999999999999999999888886632
Q ss_pred cchhhhhcccccccchhhhhhhhcc-ccceeeeeeeehheecccceEEEeeccceeecchhhHHhhccCCchhccCCC
Q psy12535 104 RWGRSFFGSALGVRGALSLVRTSFL-KEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGLDFTQLLDAP 180 (209)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~~~~~~~~~~~~~~ 180 (209)
..... .++|||+|||+++.+..||+|++|++|++++.|+++++......|..++...
T Consensus 200 --------------------~~~~~~~g~tviivtHd~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 257 (271)
T 2ixe_A 200 --------------------YESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERGGCYRSMVEAL 257 (271)
T ss_dssp --------------------HHCTTTTTSEEEEECSCHHHHTTCSEEEEEETTEEEEEECHHHHHHHTSHHHHHHHC-
T ss_pred --------------------HHHHhhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCcHHHHHHHHHh
Confidence 22222 3889999999999887799999999999999999999987766666665443
No 17
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.94 E-value=6.9e-28 Score=219.69 Aligned_cols=122 Identities=22% Similarity=0.355 Sum_probs=107.4
Q ss_pred CCCcceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhcc
Q psy12535 15 PNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGL 94 (209)
Q Consensus 15 ~~~~~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~ 94 (209)
+++.++++.+++.+.+.+.|.+++|.+++.+.+|||||||||+|||||+.+|+|||||||||+||+..+..+.+.+
T Consensus 123 ~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l---- 198 (390)
T 3gd7_A 123 QEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTL---- 198 (390)
T ss_dssp HHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHH----
T ss_pred HHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHH----
Confidence 3445667778888899999999999999999999999999999999999999999999999999999888876632
Q ss_pred ccCCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeeccceeecchhhHHhhcc
Q psy12535 95 HTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASG 170 (209)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~~~~ 170 (209)
+. ...++|+|+|||+++.+..||+|++|++|+|++.|+++++....
T Consensus 199 -----------------------------~~-~~~~~tvi~vtHd~e~~~~aDri~vl~~G~i~~~g~~~el~~~p 244 (390)
T 3gd7_A 199 -----------------------------KQ-AFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHYP 244 (390)
T ss_dssp -----------------------------HT-TTTTSCEEEECSSSGGGTTCSEEEEEETTEEEEESSHHHHHHCC
T ss_pred -----------------------------HH-HhCCCEEEEEEcCHHHHHhCCEEEEEECCEEEEECCHHHHHhCC
Confidence 22 12478999999999988889999999999999999999998764
No 18
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.94 E-value=2.9e-28 Score=248.70 Aligned_cols=131 Identities=25% Similarity=0.394 Sum_probs=114.2
Q ss_pred CCCCCcceeeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhh
Q psy12535 13 PDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCIT 92 (209)
Q Consensus 13 ~~~~~~~~~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~ 92 (209)
+++.+.++++.+++++++..+|.|++|.+|++|.+|||||||||+|||||+++|+|||||||||+||+.+...+.+.+
T Consensus 492 ~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l-- 569 (1284)
T 3g5u_A 492 TMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAAL-- 569 (1284)
T ss_dssp CHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHH--
T ss_pred CHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHH--
Confidence 344556677778889999999999999999999999999999999999999999999999999999998877665422
Q ss_pred ccccCCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeeccceeecchhhHHhhccCC
Q psy12535 93 GLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGLD 172 (209)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~~~~~~ 172 (209)
+. ..+++|+|+|||+++.+..||+|++|++|+|++.|+++++.+..+.
T Consensus 570 -------------------------------~~-~~~~~t~i~itH~l~~i~~~d~i~vl~~G~i~~~g~~~~l~~~~~~ 617 (1284)
T 3g5u_A 570 -------------------------------DK-AREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMREKGI 617 (1284)
T ss_dssp -------------------------------HH-HHTTSEEEEECSCHHHHTTCSEEEECSSSCCCCEECHHHHHHTTSH
T ss_pred -------------------------------HH-HcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhCCCH
Confidence 11 2358999999999999999999999999999999999999987766
Q ss_pred chhcc
Q psy12535 173 FTQLL 177 (209)
Q Consensus 173 ~~~~~ 177 (209)
|.+++
T Consensus 618 ~~~~~ 622 (1284)
T 3g5u_A 618 YFKLV 622 (1284)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66554
No 19
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.92 E-value=2.5e-26 Score=200.26 Aligned_cols=101 Identities=23% Similarity=0.342 Sum_probs=86.9
Q ss_pred CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535 36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG 115 (209)
Q Consensus 36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (209)
|+.......+.+|||||||||+|||||+.+|+||||||||++||+.+...+++.
T Consensus 132 ~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~-------------------------- 185 (275)
T 3gfo_A 132 GIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKL-------------------------- 185 (275)
T ss_dssp TCGGGTTSBGGGSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHH--------------------------
T ss_pred CCchhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHH--------------------------
Confidence 444555677789999999999999999999999999999999999988888763
Q ss_pred ccchhhhhhhhc-cccceeeeeeeehheecc-cceEEEeeccceeecchhhHHhhc
Q psy12535 116 VRGALSLVRTSF-LKEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQLLAS 169 (209)
Q Consensus 116 ~~~~~~~~~~~~-~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l~~~ 169 (209)
+++.. .+|+|||+|||+++.+.. ||+|++|++|++++.|++++++.+
T Consensus 186 -------l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 234 (275)
T 3gfo_A 186 -------LVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE 234 (275)
T ss_dssp -------HHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEEEEECHHHHTHH
T ss_pred -------HHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhcC
Confidence 33333 348999999999999864 899999999999999999998764
No 20
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.92 E-value=6.9e-27 Score=211.71 Aligned_cols=101 Identities=25% Similarity=0.361 Sum_probs=86.3
Q ss_pred CceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccc
Q psy12535 37 DRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGV 116 (209)
Q Consensus 37 ~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (209)
+.......+.+|||||||||+|||||+.+|+|||||||||+||+.+...+++.
T Consensus 153 L~~~~~~~~~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~l--------------------------- 205 (366)
T 3tui_C 153 LGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILEL--------------------------- 205 (366)
T ss_dssp CGGGTTCCTTTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHH---------------------------
T ss_pred CchHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHH---------------------------
Confidence 33344556679999999999999999999999999999999999988888763
Q ss_pred cchhhhhhhhcc-ccceeeeeeeehheecc-cceEEEeeccceeecchhhHHhhcc
Q psy12535 117 RGALSLVRTSFL-KEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQLLASG 170 (209)
Q Consensus 117 ~~~~~~~~~~~~-~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l~~~~ 170 (209)
+++... .|+|||+|||+++.+.. ||+|++|++|+|++.|++++++.+.
T Consensus 206 ------L~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~g~~~ev~~~p 255 (366)
T 3tui_C 206 ------LKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHP 255 (366)
T ss_dssp ------HHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEECCBHHHHHSSC
T ss_pred ------HHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence 333333 38999999999999865 8999999999999999999998754
No 21
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.92 E-value=1.1e-26 Score=203.92 Aligned_cols=116 Identities=42% Similarity=0.776 Sum_probs=95.9
Q ss_pred eeeeechhhhccCCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCC
Q psy12535 21 VKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPR 100 (209)
Q Consensus 21 ~~~~~l~~~i~~lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~ 100 (209)
++.+++.+.+..+|.++++.+++.+.+|||||||||+|||||+.+|+||||||||++||+.+...+++.++..
T Consensus 133 ~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~------- 205 (290)
T 2bbs_A 133 IKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCK------- 205 (290)
T ss_dssp HHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCC-------
T ss_pred HHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHH-------
Confidence 3445666677888888999999999999999999999999999999999999999999999888886632211
Q ss_pred ccccchhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeeccceeecchhhHHhhc
Q psy12535 101 FDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLAS 169 (209)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~~~ 169 (209)
..+++|||+|||+++.+..||+|++|++|++++.|+++++...
T Consensus 206 --------------------------~~~~~tviivtHd~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 248 (290)
T 2bbs_A 206 --------------------------LMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNL 248 (290)
T ss_dssp --------------------------CTTTSEEEEECCCHHHHHHSSEEEEEETTEEEEEECHHHHHHH
T ss_pred --------------------------hhCCCEEEEEecCHHHHHcCCEEEEEECCeEEEeCCHHHHhhh
Confidence 1247899999999998877999999999999999999998753
No 22
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.92 E-value=8.8e-27 Score=210.49 Aligned_cols=103 Identities=27% Similarity=0.442 Sum_probs=86.6
Q ss_pred CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535 36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG 115 (209)
Q Consensus 36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (209)
|+.....+++.+|||||||||+|||||+.+|+|||||||||+||+..+..+++.+...
T Consensus 127 gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~---------------------- 184 (359)
T 3fvq_A 127 GISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAA---------------------- 184 (359)
T ss_dssp TCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHH----------------------
T ss_pred CCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHH----------------------
Confidence 3444555667799999999999999999999999999999999999888886643221
Q ss_pred ccchhhhhhhhccccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhcc
Q psy12535 116 VRGALSLVRTSFLKEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLASG 170 (209)
Q Consensus 116 ~~~~~~~~~~~~~~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~~ 170 (209)
....|+|+|+|||+++.+. .||||++|++|+|++.|+++++..+.
T Consensus 185 ----------~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~el~~~p 230 (359)
T 3fvq_A 185 ----------LRANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELYRQP 230 (359)
T ss_dssp ----------HHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred ----------HHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEEeCHHHHHhCc
Confidence 1234889999999999875 58999999999999999999998754
No 23
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.92 E-value=3.2e-26 Score=194.62 Aligned_cols=93 Identities=28% Similarity=0.428 Sum_probs=79.1
Q ss_pred cccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhh
Q psy12535 42 GDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALS 121 (209)
Q Consensus 42 g~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (209)
...+.+|||||||||+|||||+.+|+||||||||++||+.+...+++.
T Consensus 140 ~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~-------------------------------- 187 (235)
T 3tif_A 140 NHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQL-------------------------------- 187 (235)
T ss_dssp TCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHH--------------------------------
T ss_pred hCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHH--------------------------------
Confidence 567789999999999999999999999999999999999988888763
Q ss_pred hhhhhcc-ccceeeeeeeehheecccceEEEeeccceeecchhhHHh
Q psy12535 122 LVRTSFL-KEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLL 167 (209)
Q Consensus 122 ~~~~~~~-~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~ 167 (209)
+++... .|+|||+|||+++.+..||+|++|++|++++.++.+++.
T Consensus 188 -l~~l~~~~g~tvi~vtHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 233 (235)
T 3tif_A 188 -LKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKLRGFD 233 (235)
T ss_dssp -HHHHHHHHCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEECC---
T ss_pred -HHHHHHHcCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEcChhhhc
Confidence 333333 389999999999976678999999999999999887753
No 24
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.91 E-value=9e-26 Score=194.01 Aligned_cols=97 Identities=24% Similarity=0.408 Sum_probs=84.6
Q ss_pred CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535 36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG 115 (209)
Q Consensus 36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (209)
|++....+.+.+|||||||||+|||||+.+|+||||||||++||+.+...+++.
T Consensus 142 ~l~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~-------------------------- 195 (257)
T 1g6h_A 142 KLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNH-------------------------- 195 (257)
T ss_dssp TCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHH--------------------------
T ss_pred CCchhhCCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHH--------------------------
Confidence 455566778889999999999999999999999999999999999988888663
Q ss_pred ccchhhhhhhhccccceeeeeeeehheec-ccceEEEeeccceeecchhhH
Q psy12535 116 VRGALSLVRTSFLKEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQ 165 (209)
Q Consensus 116 ~~~~~~~~~~~~~~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~ 165 (209)
+++...+|+|||+|||+++.+. .||+|++|++|++++.|++++
T Consensus 196 -------l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~ 239 (257)
T 1g6h_A 196 -------VLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEE 239 (257)
T ss_dssp -------HHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEEESHH
T ss_pred -------HHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEeCHHH
Confidence 3333334899999999999876 589999999999999999988
No 25
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.91 E-value=8.6e-26 Score=194.96 Aligned_cols=101 Identities=32% Similarity=0.511 Sum_probs=86.7
Q ss_pred CCcee-ecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccc
Q psy12535 36 GDRTL-VGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSAL 114 (209)
Q Consensus 36 g~~t~-vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (209)
|+... ....+.+|||||||||+|||||+.+|+||||||||++||+.+...+.+.
T Consensus 141 ~L~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~------------------------- 195 (262)
T 1b0u_A 141 GIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRI------------------------- 195 (262)
T ss_dssp TCCHHHHTSCGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHH-------------------------
T ss_pred CCCchhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHH-------------------------
Confidence 44445 5677889999999999999999999999999999999999988888663
Q ss_pred cccchhhhhhhhccccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhc
Q psy12535 115 GVRGALSLVRTSFLKEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLAS 169 (209)
Q Consensus 115 ~~~~~~~~~~~~~~~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~ 169 (209)
++....+|+|||+|||+++.+. .||+|++|++|++++.|+++++...
T Consensus 196 --------l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 243 (262)
T 1b0u_A 196 --------MQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVFGN 243 (262)
T ss_dssp --------HHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred --------HHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 3333334889999999999886 5899999999999999999998764
No 26
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.91 E-value=1.5e-25 Score=194.12 Aligned_cols=101 Identities=25% Similarity=0.401 Sum_probs=86.6
Q ss_pred CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535 36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG 115 (209)
Q Consensus 36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (209)
|+.......+.+|||||||||+|||||+.+|+||||||||++||+.+...+.+.
T Consensus 148 ~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~-------------------------- 201 (263)
T 2olj_A 148 GLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSV-------------------------- 201 (263)
T ss_dssp TCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHH--------------------------
T ss_pred CCchHhcCChhhCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHH--------------------------
Confidence 444556677889999999999999999999999999999999999988888663
Q ss_pred ccchhhhhhhhccccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhc
Q psy12535 116 VRGALSLVRTSFLKEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLAS 169 (209)
Q Consensus 116 ~~~~~~~~~~~~~~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~ 169 (209)
+++...+++|||+|||+++.+. .||+|++|++|++++.|+++++...
T Consensus 202 -------l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
T 2olj_A 202 -------MKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDR 249 (263)
T ss_dssp -------HHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred -------HHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 3333334889999999999986 5899999999999999999998754
No 27
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.91 E-value=8.3e-26 Score=192.46 Aligned_cols=99 Identities=20% Similarity=0.339 Sum_probs=84.9
Q ss_pred CceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccc
Q psy12535 37 DRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGV 116 (209)
Q Consensus 37 ~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (209)
+....++.+.+|||||||||+|||||+.+|+||||||||++||+.+...+++.
T Consensus 129 l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~--------------------------- 181 (240)
T 1ji0_A 129 LKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEV--------------------------- 181 (240)
T ss_dssp HHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHH---------------------------
T ss_pred HhhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHH---------------------------
Confidence 44456677889999999999999999999999999999999999988888663
Q ss_pred cchhhhhhhhccccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhh
Q psy12535 117 RGALSLVRTSFLKEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLA 168 (209)
Q Consensus 117 ~~~~~~~~~~~~~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~ 168 (209)
++....+++|||+|||+++.+. .||+|++|++|++++.|+++++..
T Consensus 182 ------l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 228 (240)
T 1ji0_A 182 ------IQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLD 228 (240)
T ss_dssp ------HHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHT
T ss_pred ------HHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHhc
Confidence 2333335889999999998765 589999999999999999998864
No 28
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.91 E-value=1.8e-25 Score=203.27 Aligned_cols=102 Identities=27% Similarity=0.425 Sum_probs=86.9
Q ss_pred CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535 36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG 115 (209)
Q Consensus 36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (209)
|+.....+++.+|||||||||+|||||+.+|+|||||||||+||+..+..+++.+
T Consensus 122 ~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l------------------------- 176 (381)
T 3rlf_A 122 QLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEI------------------------- 176 (381)
T ss_dssp TCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHH-------------------------
T ss_pred CCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHH-------------------------
Confidence 3444556777899999999999999999999999999999999999888887643
Q ss_pred ccchhhhhhhhcc-ccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhcc
Q psy12535 116 VRGALSLVRTSFL-KEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLASG 170 (209)
Q Consensus 116 ~~~~~~~~~~~~~-~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~~ 170 (209)
++... .|+|+|+|||+++.+. .||+|++|++|+|++.|+++++....
T Consensus 177 --------~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~~l~~~p 225 (381)
T 3rlf_A 177 --------SRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYP 225 (381)
T ss_dssp --------HHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCC
T ss_pred --------HHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEeCHHHHHhCC
Confidence 22222 3899999999999875 58999999999999999999998654
No 29
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.91 E-value=1.5e-25 Score=194.04 Aligned_cols=97 Identities=29% Similarity=0.424 Sum_probs=83.4
Q ss_pred eecccceecCCccchhhhhHHHHhh------hcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccc
Q psy12535 40 LVGDKGVSLSGGQRARISLARAVYK------RADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSA 113 (209)
Q Consensus 40 ~vg~~g~~LSgGqrQRlaiARal~~------~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (209)
.....+.+|||||||||+|||||+. +|+||||||||+|||+.+...+++.
T Consensus 134 ~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~------------------------ 189 (266)
T 4g1u_C 134 LAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRL------------------------ 189 (266)
T ss_dssp TTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHH------------------------
T ss_pred HhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHH------------------------
Confidence 3456677999999999999999999 9999999999999999988888763
Q ss_pred ccccchhhhhhhhccc-cceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhc
Q psy12535 114 LGVRGALSLVRTSFLK-EKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLAS 169 (209)
Q Consensus 114 ~~~~~~~~~~~~~~~~-~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~ 169 (209)
+++...+ ++|||+|||+++.+. .||+|++|++|++++.|+++++...
T Consensus 190 ---------l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~ 238 (266)
T 4g1u_C 190 ---------LRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEVLNA 238 (266)
T ss_dssp ---------HHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHCCH
T ss_pred ---------HHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEEcCHHHHhCc
Confidence 3333333 579999999999986 5899999999999999999998753
No 30
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.91 E-value=5.7e-26 Score=205.89 Aligned_cols=102 Identities=26% Similarity=0.404 Sum_probs=85.7
Q ss_pred CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535 36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG 115 (209)
Q Consensus 36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (209)
|+.....+++.+|||||||||+|||||+.+|+|||||||||+||+..+..+.+.+
T Consensus 130 ~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l------------------------- 184 (372)
T 1v43_A 130 QIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEI------------------------- 184 (372)
T ss_dssp TCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHH-------------------------
T ss_pred CChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHH-------------------------
Confidence 3344455566799999999999999999999999999999999999888887633
Q ss_pred ccchhhhhhhhcc-ccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhcc
Q psy12535 116 VRGALSLVRTSFL-KEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLASG 170 (209)
Q Consensus 116 ~~~~~~~~~~~~~-~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~~ 170 (209)
++... .+.|+|+|||+++.+. .||+|++|++|+|++.|+++++....
T Consensus 185 --------~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p 233 (372)
T 1v43_A 185 --------KKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRP 233 (372)
T ss_dssp --------HHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCC
T ss_pred --------HHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCc
Confidence 22222 3789999999999875 58999999999999999999997653
No 31
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.91 E-value=1.7e-25 Score=191.14 Aligned_cols=102 Identities=31% Similarity=0.469 Sum_probs=86.0
Q ss_pred CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535 36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG 115 (209)
Q Consensus 36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (209)
|+.......+.+|||||||||+|||||+.+|++|||||||++||+.+...+++.
T Consensus 115 ~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~-------------------------- 168 (240)
T 2onk_A 115 GIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEE-------------------------- 168 (240)
T ss_dssp TCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHH--------------------------
T ss_pred CCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHH--------------------------
Confidence 344445667789999999999999999999999999999999999988888763
Q ss_pred ccchhhhhhhhcc-ccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhcc
Q psy12535 116 VRGALSLVRTSFL-KEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLASG 170 (209)
Q Consensus 116 ~~~~~~~~~~~~~-~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~~ 170 (209)
++.... .++|||++||+++.+. .||+|++|++|++++.|+++++....
T Consensus 169 -------l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 218 (240)
T 2onk_A 169 -------LRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAK 218 (240)
T ss_dssp -------HHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred -------HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCc
Confidence 223222 3789999999999875 58999999999999999999987643
No 32
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.91 E-value=2e-25 Score=188.28 Aligned_cols=94 Identities=20% Similarity=0.300 Sum_probs=80.4
Q ss_pred CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535 36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG 115 (209)
Q Consensus 36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (209)
|+.......+.+|||||||||+|||||+.+|++|||||||++||+.+...+++.
T Consensus 129 ~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~-------------------------- 182 (224)
T 2pcj_A 129 GLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDI-------------------------- 182 (224)
T ss_dssp TCTTCTTCCGGGSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHH--------------------------
T ss_pred CCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHH--------------------------
Confidence 344455677889999999999999999999999999999999999988888763
Q ss_pred ccchhhhhhhhccccceeeeeeeehheecccceEEEeeccceeecch
Q psy12535 116 VRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGT 162 (209)
Q Consensus 116 ~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~ 162 (209)
+++...+++|||+|||+++.+..||+|++|++|++++.|+
T Consensus 183 -------l~~l~~~g~tvi~vtHd~~~~~~~d~v~~l~~G~i~~~g~ 222 (224)
T 2pcj_A 183 -------FLKINEGGTSIVMVTHERELAELTHRTLEMKDGKVVGEIT 222 (224)
T ss_dssp -------HHHHHHTTCEEEEECSCHHHHTTSSEEEEEETTEEEEEEE
T ss_pred -------HHHHHHCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEee
Confidence 3333334889999999999876789999999999999886
No 33
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.91 E-value=4.3e-26 Score=205.82 Aligned_cols=102 Identities=27% Similarity=0.404 Sum_probs=86.3
Q ss_pred CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535 36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG 115 (209)
Q Consensus 36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (209)
|+.....+++.+|||||||||+|||||+.+|+|||||||||+||+..+..+.+.+
T Consensus 122 ~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l------------------------- 176 (359)
T 2yyz_A 122 LIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEI------------------------- 176 (359)
T ss_dssp TCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHH-------------------------
T ss_pred CCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHH-------------------------
Confidence 3444556667799999999999999999999999999999999999888886633
Q ss_pred ccchhhhhhhhcc-ccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhcc
Q psy12535 116 VRGALSLVRTSFL-KEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLASG 170 (209)
Q Consensus 116 ~~~~~~~~~~~~~-~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~~ 170 (209)
++... .++|+|+|||+++.+. .||+|++|++|+|++.|+++++....
T Consensus 177 --------~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~p 225 (359)
T 2yyz_A 177 --------KHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVYDSP 225 (359)
T ss_dssp --------HHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred --------HHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCc
Confidence 22222 3789999999999875 58999999999999999999998654
No 34
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.91 E-value=3.7e-25 Score=190.80 Aligned_cols=101 Identities=20% Similarity=0.338 Sum_probs=86.4
Q ss_pred CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535 36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG 115 (209)
Q Consensus 36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (209)
|+.......+.+|||||||||+|||||+.+|+||||||||++||+.+...+++.
T Consensus 135 gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~-------------------------- 188 (256)
T 1vpl_A 135 GLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKI-------------------------- 188 (256)
T ss_dssp CCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHH--------------------------
T ss_pred CCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHH--------------------------
Confidence 444455667789999999999999999999999999999999999988888663
Q ss_pred ccchhhhhhhhccccceeeeeeeehheecc-cceEEEeeccceeecchhhHHhhc
Q psy12535 116 VRGALSLVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQLLAS 169 (209)
Q Consensus 116 ~~~~~~~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l~~~ 169 (209)
+++...+++|||++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 189 -------l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 236 (256)
T 1vpl_A 189 -------LKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKER 236 (256)
T ss_dssp -------HHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred -------HHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEEEecCHHHHHHh
Confidence 33333358899999999999875 899999999999999999998653
No 35
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.90 E-value=4.8e-25 Score=190.51 Aligned_cols=99 Identities=31% Similarity=0.460 Sum_probs=84.7
Q ss_pred eeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccc
Q psy12535 39 TLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRG 118 (209)
Q Consensus 39 t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (209)
......+.+|||||||||+|||||+.+|+||||||||++||+.+...+++.
T Consensus 130 ~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~----------------------------- 180 (266)
T 2yz2_A 130 SFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRI----------------------------- 180 (266)
T ss_dssp HHTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHH-----------------------------
T ss_pred ccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHH-----------------------------
Confidence 334555679999999999999999999999999999999999988888763
Q ss_pred hhhhhhhhccccceeeeeeeehheecc-cceEEEeeccceeecchhhHHhhcc
Q psy12535 119 ALSLVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQLLASG 170 (209)
Q Consensus 119 ~~~~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l~~~~ 170 (209)
++....+++|||+|||+++.+.. ||+|++|++|++++.|+++++....
T Consensus 181 ----l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~ 229 (266)
T 2yz2_A 181 ----VEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEKY 229 (266)
T ss_dssp ----HHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEEEEEEEHHHHHHHS
T ss_pred ----HHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcCc
Confidence 33333348899999999999875 8999999999999999999987653
No 36
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.90 E-value=5.6e-25 Score=197.98 Aligned_cols=102 Identities=25% Similarity=0.342 Sum_probs=86.2
Q ss_pred CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535 36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG 115 (209)
Q Consensus 36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (209)
|+.......+.+|||||||||+|||||+.+|+|||||||||+||+..+..+.+.+
T Consensus 129 ~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l------------------------- 183 (353)
T 1oxx_K 129 DIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALV------------------------- 183 (353)
T ss_dssp TCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHH-------------------------
T ss_pred CCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHH-------------------------
Confidence 3444556677899999999999999999999999999999999999888887633
Q ss_pred ccchhhhhhhhcc-ccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhcc
Q psy12535 116 VRGALSLVRTSFL-KEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLASG 170 (209)
Q Consensus 116 ~~~~~~~~~~~~~-~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~~ 170 (209)
++... .++|+|+|||+++.+. .||+|++|++|+|++.|+++++..+.
T Consensus 184 --------~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~p 232 (353)
T 1oxx_K 184 --------KEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNP 232 (353)
T ss_dssp --------HHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred --------HHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 22222 3789999999999875 58999999999999999999997653
No 37
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.90 E-value=5.7e-25 Score=198.70 Aligned_cols=102 Identities=26% Similarity=0.371 Sum_probs=86.4
Q ss_pred CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535 36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG 115 (209)
Q Consensus 36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (209)
|+.....+++.+|||||||||+|||||+.+|+|||||||||+||+..+..+.+.+
T Consensus 122 ~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l------------------------- 176 (362)
T 2it1_A 122 HIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAEL------------------------- 176 (362)
T ss_dssp TCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHH-------------------------
T ss_pred CCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHH-------------------------
Confidence 3444556677899999999999999999999999999999999999888887633
Q ss_pred ccchhhhhhhhcc-ccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhcc
Q psy12535 116 VRGALSLVRTSFL-KEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLASG 170 (209)
Q Consensus 116 ~~~~~~~~~~~~~-~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~~ 170 (209)
++... .++|+|+|||+++.+. .||+|++|++|+|++.|+++++....
T Consensus 177 --------~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~~~~~p 225 (362)
T 2it1_A 177 --------KRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEVYYKP 225 (362)
T ss_dssp --------HHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred --------HHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 22222 3789999999999865 58999999999999999999997653
No 38
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.90 E-value=5.2e-25 Score=192.03 Aligned_cols=100 Identities=24% Similarity=0.357 Sum_probs=85.5
Q ss_pred CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535 36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG 115 (209)
Q Consensus 36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (209)
|+.......+.+|||||||||+|||||+.+|+||||||||++||+.+...+++.
T Consensus 150 gl~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~-------------------------- 203 (279)
T 2ihy_A 150 GMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSI-------------------------- 203 (279)
T ss_dssp TCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHH--------------------------
T ss_pred CChhHhcCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHH--------------------------
Confidence 444556677889999999999999999999999999999999999988888663
Q ss_pred ccchhhhhhhhcccccee--eeeeeehheec-ccceEEEeeccceeecchhhHHhh
Q psy12535 116 VRGALSLVRTSFLKEKTV--MLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLA 168 (209)
Q Consensus 116 ~~~~~~~~~~~~~~~~Ti--IvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~ 168 (209)
+++...+++|| |+|||+++.+. .||+|++|++|++++.|+++++..
T Consensus 204 -------l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 252 (279)
T 2ihy_A 204 -------LDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDILT 252 (279)
T ss_dssp -------HHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEETTEEEEEEEHHHHCS
T ss_pred -------HHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 23333347899 99999999875 589999999999999999998864
No 39
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.90 E-value=5.4e-25 Score=198.44 Aligned_cols=102 Identities=30% Similarity=0.456 Sum_probs=86.4
Q ss_pred CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535 36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG 115 (209)
Q Consensus 36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (209)
|+.....+++.+|||||||||+|||||+.+|+|||||||||+||+..+..+.+.+
T Consensus 134 gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l------------------------- 188 (355)
T 1z47_A 134 RLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFV------------------------- 188 (355)
T ss_dssp TCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHH-------------------------
T ss_pred CChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHH-------------------------
Confidence 4444556677899999999999999999999999999999999999888886632
Q ss_pred ccchhhhhhhhcc-ccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhcc
Q psy12535 116 VRGALSLVRTSFL-KEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLASG 170 (209)
Q Consensus 116 ~~~~~~~~~~~~~-~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~~ 170 (209)
++... .++|+|+|||+++.+. .||+|++|++|+|++.|+++++....
T Consensus 189 --------~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p 237 (355)
T 1z47_A 189 --------RQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEKP 237 (355)
T ss_dssp --------HHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred --------HHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 22222 3789999999999875 58999999999999999999997653
No 40
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.90 E-value=6.9e-25 Score=198.68 Aligned_cols=102 Identities=26% Similarity=0.462 Sum_probs=86.4
Q ss_pred CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535 36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG 115 (209)
Q Consensus 36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (209)
|+.....+++.+|||||||||+|||||+.+|+|||||||||+||+..+..+.+.+
T Consensus 128 ~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l------------------------- 182 (372)
T 1g29_1 128 GLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAEL------------------------- 182 (372)
T ss_dssp TCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHH-------------------------
T ss_pred CCchHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHH-------------------------
Confidence 3444556677899999999999999999999999999999999999888886633
Q ss_pred ccchhhhhhhhcc-ccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhcc
Q psy12535 116 VRGALSLVRTSFL-KEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLASG 170 (209)
Q Consensus 116 ~~~~~~~~~~~~~-~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~~ 170 (209)
++... .++|+|+|||+++.+. .||+|++|++|+|++.|+++++....
T Consensus 183 --------~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p 231 (372)
T 1g29_1 183 --------KKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDKP 231 (372)
T ss_dssp --------HHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred --------HHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEEeCCHHHHHhCc
Confidence 22222 3789999999999875 58999999999999999999997653
No 41
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.90 E-value=1.6e-24 Score=185.59 Aligned_cols=93 Identities=22% Similarity=0.211 Sum_probs=75.5
Q ss_pred eeccccee-cCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccc
Q psy12535 40 LVGDKGVS-LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRG 118 (209)
Q Consensus 40 ~vg~~g~~-LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (209)
.....+.+ |||||||||+|||||+.+|+||||||||++||+.+...+++.
T Consensus 135 ~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~----------------------------- 185 (250)
T 2d2e_A 135 YLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARG----------------------------- 185 (250)
T ss_dssp GGGSBTTCC----HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHH-----------------------------
T ss_pred HhcCCcccCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHH-----------------------------
Confidence 34555667 999999999999999999999999999999999988888663
Q ss_pred hhhhhhhhccccceeeeeeeehheecc--cceEEEeeccceeecchhhH
Q psy12535 119 ALSLVRTSFLKEKTVMLITHQIQYLTH--VDHVMLLEKGSVEAFGTTTQ 165 (209)
Q Consensus 119 ~~~~~~~~~~~~~TiIvitH~l~~l~~--~DrV~~L~~G~i~~~G~~~~ 165 (209)
++....+++|||+|||+++.+.. ||+|++|++|++++.|+++.
T Consensus 186 ----l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~~ 230 (250)
T 2d2e_A 186 ----VNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGPEL 230 (250)
T ss_dssp ----HHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTEEEEEESHHH
T ss_pred ----HHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCEEEEEeCHHH
Confidence 33333358899999999998875 49999999999999998873
No 42
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.90 E-value=1.2e-24 Score=188.32 Aligned_cols=94 Identities=20% Similarity=0.260 Sum_probs=80.4
Q ss_pred cccce-ecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchh
Q psy12535 42 GDKGV-SLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGAL 120 (209)
Q Consensus 42 g~~g~-~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (209)
..... +|||||||||+|||||+.+|+||||||||++||+.+...+++.
T Consensus 158 ~~~~~~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~------------------------------- 206 (267)
T 2zu0_C 158 TRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADG------------------------------- 206 (267)
T ss_dssp TSBTTTTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHH-------------------------------
T ss_pred cCCcccCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHH-------------------------------
Confidence 44444 5999999999999999999999999999999999988888663
Q ss_pred hhhhhhccccceeeeeeeehheecc--cceEEEeeccceeecchhhHHhh
Q psy12535 121 SLVRTSFLKEKTVMLITHQIQYLTH--VDHVMLLEKGSVEAFGTTTQLLA 168 (209)
Q Consensus 121 ~~~~~~~~~~~TiIvitH~l~~l~~--~DrV~~L~~G~i~~~G~~~~l~~ 168 (209)
++....+++|||+|||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 207 --l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 254 (267)
T 2zu0_C 207 --VNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLVKQ 254 (267)
T ss_dssp --HHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETTEEEEEECTTHHHH
T ss_pred --HHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEEEEEcCHHHHhh
Confidence 33333458999999999998864 79999999999999999988753
No 43
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.90 E-value=5.9e-25 Score=197.61 Aligned_cols=101 Identities=27% Similarity=0.413 Sum_probs=85.5
Q ss_pred CceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccc
Q psy12535 37 DRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGV 116 (209)
Q Consensus 37 ~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (209)
+.....+++.+|||||||||+|||||+.+|++||||||||+||+..+..+.+.+
T Consensus 117 L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l-------------------------- 170 (348)
T 3d31_A 117 IEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREML-------------------------- 170 (348)
T ss_dssp CTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHH--------------------------
T ss_pred CchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHH--------------------------
Confidence 344456677899999999999999999999999999999999999888887633
Q ss_pred cchhhhhhhhcc-ccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhhcc
Q psy12535 117 RGALSLVRTSFL-KEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLASG 170 (209)
Q Consensus 117 ~~~~~~~~~~~~-~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~~~ 170 (209)
++... .++|+|+|||+++.+. .||+|++|++|+|++.|+++++....
T Consensus 171 -------~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~~~~~p 219 (348)
T 3d31_A 171 -------SVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKP 219 (348)
T ss_dssp -------HHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSSC
T ss_pred -------HHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCc
Confidence 22222 3889999999999865 58999999999999999999997653
No 44
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.90 E-value=9.6e-25 Score=187.68 Aligned_cols=99 Identities=31% Similarity=0.376 Sum_probs=84.1
Q ss_pred CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535 36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG 115 (209)
Q Consensus 36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (209)
|+.......+.+|||||||||+|||||+.+|+||||||||++||+.+...+.+.
T Consensus 117 ~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~-------------------------- 170 (253)
T 2nq2_C 117 NLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSL-------------------------- 170 (253)
T ss_dssp TCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHH--------------------------
T ss_pred CChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHH--------------------------
Confidence 444455667889999999999999999999999999999999999988888663
Q ss_pred ccchhhhhhhhccc-cceeeeeeeehheec-ccceEEEeeccceeecchhhHHhh
Q psy12535 116 VRGALSLVRTSFLK-EKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLA 168 (209)
Q Consensus 116 ~~~~~~~~~~~~~~-~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~ 168 (209)
+.....+ ++|||++||+++.+. .||+|++|++|+ ++.|+++++..
T Consensus 171 -------l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~~g~~~~~~~ 217 (253)
T 2nq2_C 171 -------LIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-FKFGETRNILT 217 (253)
T ss_dssp -------HHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-EEEEEHHHHCC
T ss_pred -------HHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-EecCCHHHHhC
Confidence 2233333 889999999999885 589999999999 99999998864
No 45
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.90 E-value=1.2e-24 Score=186.92 Aligned_cols=100 Identities=23% Similarity=0.351 Sum_probs=85.8
Q ss_pred CCceeecccceecCCccchhhhhHHHHhhhcc-------eeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhh
Q psy12535 36 GDRTLVGDKGVSLSGGQRARISLARAVYKRAD-------VYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRS 108 (209)
Q Consensus 36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~-------illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (209)
|+...+...+.+|||||||||+|||||+.+|+ +|||||||++||+.+...+.+.
T Consensus 115 ~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~------------------- 175 (249)
T 2qi9_C 115 ALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKI------------------- 175 (249)
T ss_dssp TCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHH-------------------
T ss_pred CChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHH-------------------
Confidence 44455567788999999999999999999999 9999999999999988888663
Q ss_pred hhcccccccchhhhhhhhccccceeeeeeeehheec-ccceEEEeeccceeecchhhHHhh
Q psy12535 109 FFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLLA 168 (209)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~~ 168 (209)
++....+++|||++||+++.+. .||+|++|++|++++.|+++++..
T Consensus 176 --------------l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 222 (249)
T 2qi9_C 176 --------------LSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLT 222 (249)
T ss_dssp --------------HHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEEEHHHHSC
T ss_pred --------------HHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 3333334889999999999985 589999999999999999998864
No 46
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.89 E-value=5.8e-24 Score=184.13 Aligned_cols=98 Identities=20% Similarity=0.241 Sum_probs=85.1
Q ss_pred CCc-eeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccc
Q psy12535 36 GDR-TLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSAL 114 (209)
Q Consensus 36 g~~-t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (209)
|++ ...+.++.+|||||||||+|||||+.+|++|||||||++||+.+...+.+.+
T Consensus 116 gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L------------------------ 171 (263)
T 2pjz_A 116 KLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYI------------------------ 171 (263)
T ss_dssp TCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHH------------------------
T ss_pred CCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHH------------------------
Confidence 555 6677888999999999999999999999999999999999999888886632
Q ss_pred cccchhhhhhhhccccceeeeeeeehheec-ccc-eEEEeeccceeecchhhHHhhc
Q psy12535 115 GVRGALSLVRTSFLKEKTVMLITHQIQYLT-HVD-HVMLLEKGSVEAFGTTTQLLAS 169 (209)
Q Consensus 115 ~~~~~~~~~~~~~~~~~TiIvitH~l~~l~-~~D-rV~~L~~G~i~~~G~~~~l~~~ 169 (209)
+... . |||++||+++.+. .|| +|++|++|++++.|+++++...
T Consensus 172 ---------~~~~--~-tviivtHd~~~~~~~~d~~i~~l~~G~i~~~g~~~~l~~~ 216 (263)
T 2pjz_A 172 ---------KEYG--K-EGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLES 216 (263)
T ss_dssp ---------HHSC--S-EEEEEESCGGGGGGCTTSEEEEEETTEEEEEEEHHHHHTE
T ss_pred ---------HHhc--C-cEEEEEcCHHHHHHhcCceEEEEECCEEEEecCHHHHHhh
Confidence 2221 2 9999999999875 589 9999999999999999999754
No 47
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.86 E-value=9e-23 Score=195.66 Aligned_cols=101 Identities=24% Similarity=0.437 Sum_probs=86.3
Q ss_pred eecccceecCCccchhhhhHHHHhhhc---ceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccc
Q psy12535 40 LVGDKGVSLSGGQRARISLARAVYKRA---DVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGV 116 (209)
Q Consensus 40 ~vg~~g~~LSgGqrQRlaiARal~~~p---~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (209)
..++.+.+|||||||||+|||||+.+| +||||||||+|||+.+...+++.
T Consensus 536 ~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~--------------------------- 588 (670)
T 3ux8_A 536 KLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDV--------------------------- 588 (670)
T ss_dssp BTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHH---------------------------
T ss_pred hccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHH---------------------------
Confidence 346778899999999999999999886 59999999999999988888763
Q ss_pred cchhhhhhhhccccceeeeeeeehheecccceEEEe------eccceeecchhhHHhhccCCc
Q psy12535 117 RGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLL------EKGSVEAFGTTTQLLASGLDF 173 (209)
Q Consensus 117 ~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L------~~G~i~~~G~~~~l~~~~~~~ 173 (209)
+++...+|+|||+|||+++.+..||+|++| ++|+|++.|+++++.+....+
T Consensus 589 ------l~~l~~~g~tvi~vtHd~~~~~~~d~i~~l~~~~g~~~G~i~~~g~~~~~~~~~~~~ 645 (670)
T 3ux8_A 589 ------LHRLVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVAEVKESH 645 (670)
T ss_dssp ------HHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSGGGCCEEEEEECHHHHHTCTTCH
T ss_pred ------HHHHHHCCCEEEEEeCCHHHHHhCCEEEEecCCcCCCCCEEEEecCHHHHHhCCccH
Confidence 333334589999999999988889999999 899999999999997654443
No 48
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.85 E-value=1.9e-22 Score=193.34 Aligned_cols=98 Identities=22% Similarity=0.364 Sum_probs=85.1
Q ss_pred ecccceecCCccchhhhhHHHHhhhcc--eeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccc
Q psy12535 41 VGDKGVSLSGGQRARISLARAVYKRAD--VYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRG 118 (209)
Q Consensus 41 vg~~g~~LSgGqrQRlaiARal~~~p~--illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (209)
....+.+|||||||||+|||||+.+|+ ||||||||++||+.+...+++.
T Consensus 196 ~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~----------------------------- 246 (670)
T 3ux8_A 196 LSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIAT----------------------------- 246 (670)
T ss_dssp TTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHH-----------------------------
T ss_pred hcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHH-----------------------------
Confidence 356678999999999999999999998 9999999999999988888663
Q ss_pred hhhhhhhhccccceeeeeeeehheecccceEEEe------eccceeecchhhHHhhccC
Q psy12535 119 ALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLL------EKGSVEAFGTTTQLLASGL 171 (209)
Q Consensus 119 ~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L------~~G~i~~~G~~~~l~~~~~ 171 (209)
++....+|+|||+|||+++.+..||+|++| ++|++++.|+++++..+..
T Consensus 247 ----l~~l~~~g~tvi~vtHd~~~~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~~~~~ 301 (670)
T 3ux8_A 247 ----LKSMRDLGNTLIVVEHDEDTMLAADYLIDIGPGAGIHGGEVVAAGTPEEVMNDPN 301 (670)
T ss_dssp ----HHHHHHTTCEEEEECCCHHHHHHCSEEEEECSSSGGGCCSEEEEECHHHHHTCTT
T ss_pred ----HHHHHHcCCEEEEEeCCHHHHhhCCEEEEecccccccCCEEEEecCHHHHhcCch
Confidence 333334589999999999988789999999 8999999999999986543
No 49
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.85 E-value=1.9e-22 Score=200.19 Aligned_cols=103 Identities=29% Similarity=0.490 Sum_probs=89.0
Q ss_pred eecccceecCCccchhhhhHHHHhhhc---ceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccc
Q psy12535 40 LVGDKGVSLSGGQRARISLARAVYKRA---DVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGV 116 (209)
Q Consensus 40 ~vg~~g~~LSgGqrQRlaiARal~~~p---~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (209)
.+++.+.+|||||||||+|||||+++| +||||||||+|||+.+...+.+.
T Consensus 798 ~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~l--------------------------- 850 (916)
T 3pih_A 798 KLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEV--------------------------- 850 (916)
T ss_dssp BTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHH---------------------------
T ss_pred hccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHH---------------------------
Confidence 357888999999999999999999875 79999999999999988888663
Q ss_pred cchhhhhhhhccccceeeeeeeehheecccceEEEe------eccceeecchhhHHhhccCCchh
Q psy12535 117 RGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLL------EKGSVEAFGTTTQLLASGLDFTQ 175 (209)
Q Consensus 117 ~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L------~~G~i~~~G~~~~l~~~~~~~~~ 175 (209)
+.++..+|+|||+|||+++.+..||+|++| ++|+|++.|+++++.++...|..
T Consensus 851 ------L~~L~~~G~TVIvI~HdL~~i~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~~~~~syt~ 909 (916)
T 3pih_A 851 ------LHRLVDRGNTVIVIEHNLDVIKNADHIIDLGPEGGKEGGYIVATGTPEEIAKNPHSYTG 909 (916)
T ss_dssp ------HHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSGGGCCEEEEEESHHHHHSCTTCHHH
T ss_pred ------HHHHHhcCCEEEEEeCCHHHHHhCCEEEEecCCCCCCCCEEEEEcCHHHHHhCCchHHH
Confidence 333334589999999999999889999999 89999999999999987655543
No 50
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.83 E-value=5.2e-22 Score=189.78 Aligned_cols=98 Identities=23% Similarity=0.362 Sum_probs=83.9
Q ss_pred eeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccc
Q psy12535 39 TLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRG 118 (209)
Q Consensus 39 t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (209)
......+.+|||||||||+|||||+.+|+||||||||+|||+.+...+++.
T Consensus 459 ~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~l----------------------------- 509 (608)
T 3j16_B 459 DIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKV----------------------------- 509 (608)
T ss_dssp TTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHH-----------------------------
T ss_pred hhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHH-----------------------------
Confidence 345567789999999999999999999999999999999999988877663
Q ss_pred hhhhhhhhc-cccceeeeeeeehheecc-cceEEEeec--cceeecchhhHHhhc
Q psy12535 119 ALSLVRTSF-LKEKTVMLITHQIQYLTH-VDHVMLLEK--GSVEAFGTTTQLLAS 169 (209)
Q Consensus 119 ~~~~~~~~~-~~~~TiIvitH~l~~l~~-~DrV~~L~~--G~i~~~G~~~~l~~~ 169 (209)
++... ..|+|||+||||++.+.. ||||++|++ |+++..|++++++..
T Consensus 510 ----l~~l~~~~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~ 560 (608)
T 3j16_B 510 ----IRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHARAPESLLTG 560 (608)
T ss_dssp ----HHHHHHHHTCEEEEECSCHHHHHHHCSEEEECEEETTTEEECCCCEEHHHH
T ss_pred ----HHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEEecCChHHHhhh
Confidence 22322 248899999999999865 899999987 899999999998765
No 51
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.82 E-value=9.6e-22 Score=165.48 Aligned_cols=87 Identities=20% Similarity=0.302 Sum_probs=70.1
Q ss_pred CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535 36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG 115 (209)
Q Consensus 36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (209)
|++.. +..+.+|||||||||+|||||+.+|++|||||||++||+.+...+++.
T Consensus 123 gl~~~-~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~-------------------------- 175 (214)
T 1sgw_A 123 EVLDL-KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKS-------------------------- 175 (214)
T ss_dssp TCCCT-TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHH--------------------------
T ss_pred CCCcC-CCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHH--------------------------
Confidence 45555 778889999999999999999999999999999999999988888663
Q ss_pred ccchhhhhhhhccccceeeeeeeehheecc-cceEEEeeccce
Q psy12535 116 VRGALSLVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGSV 157 (209)
Q Consensus 116 ~~~~~~~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i 157 (209)
+.....+++|||++||+++.+.. +|+|+++ .|+|
T Consensus 176 -------l~~~~~~g~tiiivtHd~~~~~~~~d~v~~~-~~~~ 210 (214)
T 1sgw_A 176 -------ILEILKEKGIVIISSREELSYCDVNENLHKY-STKI 210 (214)
T ss_dssp -------HHHHHHHHSEEEEEESSCCTTSSEEEEGGGG-BC--
T ss_pred -------HHHHHhCCCEEEEEeCCHHHHHHhCCEEEEe-CCcc
Confidence 22323347899999999999876 5776654 5665
No 52
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.82 E-value=4.3e-21 Score=172.50 Aligned_cols=85 Identities=25% Similarity=0.384 Sum_probs=73.1
Q ss_pred cccceecCCccchhhhhHHHHh------hhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535 42 GDKGVSLSGGQRARISLARAVY------KRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG 115 (209)
Q Consensus 42 g~~g~~LSgGqrQRlaiARal~------~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (209)
+..+.+|||||||||+|||||+ .+|++|||||||++||+.+...+++.
T Consensus 274 ~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~-------------------------- 327 (365)
T 3qf7_A 274 ERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASV-------------------------- 327 (365)
T ss_dssp EEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHH--------------------------
T ss_pred CCCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHH--------------------------
Confidence 4567789999999999999999 79999999999999999988887663
Q ss_pred ccchhhhhhhhccccceeeeeeeehheecccceEEEeeccceee
Q psy12535 116 VRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEA 159 (209)
Q Consensus 116 ~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~ 159 (209)
++.....|+|||+|||+++.+..+|+|++|++|++++
T Consensus 328 -------l~~l~~~g~tvi~itH~~~~~~~~d~~~~l~~G~i~~ 364 (365)
T 3qf7_A 328 -------LKELERLNKVIVFITHDREFSEAFDRKLRITGGVVVN 364 (365)
T ss_dssp -------HHGGGGSSSEEEEEESCHHHHTTCSCEEEEETTEEC-
T ss_pred -------HHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEe
Confidence 2333345899999999999877799999999999875
No 53
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.82 E-value=2.7e-21 Score=182.17 Aligned_cols=100 Identities=25% Similarity=0.400 Sum_probs=84.6
Q ss_pred CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535 36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG 115 (209)
Q Consensus 36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (209)
|+.......+.+|||||||||+|||||+.+|+||||||||++||+.++..+++.
T Consensus 390 ~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~-------------------------- 443 (538)
T 1yqt_A 390 GIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRA-------------------------- 443 (538)
T ss_dssp TCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHH--------------------------
T ss_pred CChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHH--------------------------
Confidence 455566778889999999999999999999999999999999999988888763
Q ss_pred ccchhhhhhhhc-cccceeeeeeeehheec-ccceEEEeec--cceeecchhhHHhh
Q psy12535 116 VRGALSLVRTSF-LKEKTVMLITHQIQYLT-HVDHVMLLEK--GSVEAFGTTTQLLA 168 (209)
Q Consensus 116 ~~~~~~~~~~~~-~~~~TiIvitH~l~~l~-~~DrV~~L~~--G~i~~~G~~~~l~~ 168 (209)
+++.. ..++|||+|||+++.+. .||+|++|++ |++...|+++++..
T Consensus 444 -------l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~~~g~~~~~~~ 493 (538)
T 1yqt_A 444 -------IRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEGEPGKYGRALPPMGMRE 493 (538)
T ss_dssp -------HHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred -------HHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceEeecCCHHHHHh
Confidence 22222 24889999999999986 4899999986 78888899988765
No 54
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.81 E-value=9.9e-21 Score=187.95 Aligned_cols=97 Identities=25% Similarity=0.424 Sum_probs=85.5
Q ss_pred ecccceecCCccchhhhhHHHHhhhcc--eeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccc
Q psy12535 41 VGDKGVSLSGGQRARISLARAVYKRAD--VYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRG 118 (209)
Q Consensus 41 vg~~g~~LSgGqrQRlaiARal~~~p~--illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (209)
.++...+|||||+|||+|||||+.+|+ +|||||||++||+.....+++.
T Consensus 458 l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~----------------------------- 508 (916)
T 3pih_A 458 LSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKT----------------------------- 508 (916)
T ss_dssp TTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHH-----------------------------
T ss_pred ccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHH-----------------------------
Confidence 467788999999999999999999887 9999999999999988888663
Q ss_pred hhhhhhhhccccceeeeeeeehheecccceEEEe------eccceeecchhhHHhhcc
Q psy12535 119 ALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLL------EKGSVEAFGTTTQLLASG 170 (209)
Q Consensus 119 ~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L------~~G~i~~~G~~~~l~~~~ 170 (209)
++.+...|+|||+|||+++.+..||+|++| ++|+|++.|+++++..+.
T Consensus 509 ----L~~L~~~G~TvivVtHd~~~~~~aD~ii~lgpgag~~~G~iv~~G~~~e~~~~~ 562 (916)
T 3pih_A 509 ----LKKLRDLGNTVIVVEHDEEVIRNADHIIDIGPGGGTNGGRVVFQGTVDELLKNP 562 (916)
T ss_dssp ----HHHTTTTTCEEEEECCCHHHHHTCSEEEEEESSSGGGCSEEEEEECHHHHHHSC
T ss_pred ----HHHHHhcCCEEEEEeCCHHHHHhCCEEEEEcCCcccCCCEEEEeechhhhhcCc
Confidence 333344689999999999998889999999 899999999999998653
No 55
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.81 E-value=5e-21 Score=180.51 Aligned_cols=98 Identities=19% Similarity=0.322 Sum_probs=78.5
Q ss_pred CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535 36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG 115 (209)
Q Consensus 36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (209)
|+.......+.+|||||||||+|||||+.+|+||||||||++||+.++..+++.
T Consensus 374 ~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~-------------------------- 427 (538)
T 3ozx_A 374 NLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKA-------------------------- 427 (538)
T ss_dssp TGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHH--------------------------
T ss_pred CCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHH--------------------------
Confidence 445556677889999999999999999999999999999999999988887663
Q ss_pred ccchhhhhhhhcc-ccceeeeeeeehheecc-cceEEEeec--cceeecchhhHH
Q psy12535 116 VRGALSLVRTSFL-KEKTVMLITHQIQYLTH-VDHVMLLEK--GSVEAFGTTTQL 166 (209)
Q Consensus 116 ~~~~~~~~~~~~~-~~~TiIvitH~l~~l~~-~DrV~~L~~--G~i~~~G~~~~l 166 (209)
+++... .++|||+|||+++.+.. ||||++|++ |.+...+++.++
T Consensus 428 -------l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~~~~~~~~~~~~~~~ 475 (538)
T 3ozx_A 428 -------IKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKGEPEKAGLATSPVTL 475 (538)
T ss_dssp -------HHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEH
T ss_pred -------HHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceeccCCChHHH
Confidence 223222 47899999999999875 899999987 444445554443
No 56
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.81 E-value=1.6e-20 Score=149.94 Aligned_cols=79 Identities=24% Similarity=0.351 Sum_probs=65.5
Q ss_pred cccceecCCccchhhhhH------HHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535 42 GDKGVSLSGGQRARISLA------RAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG 115 (209)
Q Consensus 42 g~~g~~LSgGqrQRlaiA------Ral~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (209)
...+.+||||||||++|| |||+.+|+++||||||++||+.....+.+.
T Consensus 52 ~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~-------------------------- 105 (148)
T 1f2t_B 52 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITI-------------------------- 105 (148)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHH--------------------------
T ss_pred cCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHH--------------------------
Confidence 355679999999999876 899999999999999999999888777663
Q ss_pred ccchhhhhhhhccccceeeeeeeehheecccceEEEee
Q psy12535 116 VRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLE 153 (209)
Q Consensus 116 ~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~ 153 (209)
+......++|||+|||+++....+|+|++|+
T Consensus 106 -------l~~~~~~~~tiiivsH~~~~~~~~d~ii~l~ 136 (148)
T 1f2t_B 106 -------MERYLKKIPQVILVSHDEELKDAADHVIRIS 136 (148)
T ss_dssp -------HHHTGGGSSEEEEEESCGGGGGGCSEEEEEE
T ss_pred -------HHHHHccCCEEEEEEChHHHHHhCCEEEEEE
Confidence 2232335789999999996556689999994
No 57
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.81 E-value=5.8e-21 Score=182.43 Aligned_cols=100 Identities=24% Similarity=0.390 Sum_probs=83.7
Q ss_pred CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535 36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG 115 (209)
Q Consensus 36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (209)
|+.......+.+|||||||||+|||||+.+|+||||||||++||+.++..+.+.
T Consensus 460 ~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~-------------------------- 513 (607)
T 3bk7_A 460 GIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRA-------------------------- 513 (607)
T ss_dssp TCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHH--------------------------
T ss_pred CCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHH--------------------------
Confidence 344455677889999999999999999999999999999999999988887663
Q ss_pred ccchhhhhhhhc-cccceeeeeeeehheecc-cceEEEeec--cceeecchhhHHhh
Q psy12535 116 VRGALSLVRTSF-LKEKTVMLITHQIQYLTH-VDHVMLLEK--GSVEAFGTTTQLLA 168 (209)
Q Consensus 116 ~~~~~~~~~~~~-~~~~TiIvitH~l~~l~~-~DrV~~L~~--G~i~~~G~~~~l~~ 168 (209)
++... ..++|||+|||+++.+.. ||+|++|++ |++...|+++++..
T Consensus 514 -------l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~~~g~p~~~~~ 563 (607)
T 3bk7_A 514 -------IRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMGMRE 563 (607)
T ss_dssp -------HHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred -------HHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcCCcceEEecCCHHHHHh
Confidence 22322 248899999999999875 899999986 78888899988875
No 58
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.80 E-value=1.4e-20 Score=187.13 Aligned_cols=105 Identities=24% Similarity=0.419 Sum_probs=88.6
Q ss_pred CCce-eecccceecCCccchhhhhHHHHhhhc---ceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhc
Q psy12535 36 GDRT-LVGDKGVSLSGGQRARISLARAVYKRA---DVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFG 111 (209)
Q Consensus 36 g~~t-~vg~~g~~LSgGqrQRlaiARal~~~p---~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (209)
|+.. .++..+.+|||||||||+|||+|+.+| +||||||||+|||+.....+++.
T Consensus 833 gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~l---------------------- 890 (972)
T 2r6f_A 833 GLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDV---------------------- 890 (972)
T ss_dssp TCSSSBTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHH----------------------
T ss_pred CCCcccccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHH----------------------
Confidence 3444 567888999999999999999999875 99999999999999988887663
Q ss_pred ccccccchhhhhhhhccccceeeeeeeehheecccceEEEe------eccceeecchhhHHhhccCCc
Q psy12535 112 SALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLL------EKGSVEAFGTTTQLLASGLDF 173 (209)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L------~~G~i~~~G~~~~l~~~~~~~ 173 (209)
+..+..+|+|||+|||+++.+..||+|++| ++|+|++.|+++++......+
T Consensus 891 -----------L~~L~~~G~TVIvisHdl~~i~~aDrIivL~p~gG~~~G~Iv~~g~~~el~~~~~~~ 947 (972)
T 2r6f_A 891 -----------LHRLVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVAEVKESH 947 (972)
T ss_dssp -----------HHHHHHTTCEEEEECCCHHHHTTCSEEEEECSSSTTSCCSEEEEESHHHHHTCTTCH
T ss_pred -----------HHHHHhCCCEEEEEcCCHHHHHhCCEEEEEcCCCCCCCCEEEEecCHHHHHhCchhH
Confidence 333334589999999999998789999999 789999999999998765444
No 59
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.80 E-value=1.1e-20 Score=186.25 Aligned_cols=99 Identities=25% Similarity=0.405 Sum_probs=86.0
Q ss_pred eecccceecCCccchhhhhHHHHhhh---cceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccc
Q psy12535 40 LVGDKGVSLSGGQRARISLARAVYKR---ADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGV 116 (209)
Q Consensus 40 ~vg~~g~~LSgGqrQRlaiARal~~~---p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (209)
.++..+.+|||||||||+|||+|+.+ |+||||||||+|||+.....+.+.
T Consensus 723 ~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~l--------------------------- 775 (842)
T 2vf7_A 723 RLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQ--------------------------- 775 (842)
T ss_dssp BTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHH---------------------------
T ss_pred cccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHH---------------------------
Confidence 35788899999999999999999996 799999999999999988887663
Q ss_pred cchhhhhhhhccccceeeeeeeehheecccceEEEe------eccceeecchhhHHhhccC
Q psy12535 117 RGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLL------EKGSVEAFGTTTQLLASGL 171 (209)
Q Consensus 117 ~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L------~~G~i~~~G~~~~l~~~~~ 171 (209)
++.+...|+|||+|||+++.+..||+|++| ++|+|++.|+++++.....
T Consensus 776 ------L~~L~~~G~tVIvisHdl~~i~~aDrii~L~p~~g~~~G~Iv~~g~~~el~~~~~ 830 (842)
T 2vf7_A 776 ------LVKLVDAGNTVIAVEHKMQVVAASDWVLDIGPGAGEDGGRLVAQGTPAEVAQAAG 830 (842)
T ss_dssp ------HHHHHHTTCEEEEECCCHHHHTTCSEEEEECSSSGGGCCSEEEEECHHHHTTCTT
T ss_pred ------HHHHHhCCCEEEEEcCCHHHHHhCCEEEEECCCCCCCCCEEEEEcCHHHHHhCch
Confidence 333334689999999999999779999999 7999999999999986543
No 60
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.79 E-value=2.3e-20 Score=186.04 Aligned_cols=105 Identities=29% Similarity=0.446 Sum_probs=88.5
Q ss_pred CCce-eecccceecCCccchhhhhHHHHhhhc---ceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhc
Q psy12535 36 GDRT-LVGDKGVSLSGGQRARISLARAVYKRA---DVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFG 111 (209)
Q Consensus 36 g~~t-~vg~~g~~LSgGqrQRlaiARal~~~p---~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (209)
|+.. .++..+.+|||||||||+|||+|+.+| +||||||||+|||+.....+.+.
T Consensus 851 gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~l---------------------- 908 (993)
T 2ygr_A 851 GLGYVRLGQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNV---------------------- 908 (993)
T ss_dssp TGGGSBTTCCGGGSCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHH----------------------
T ss_pred CCCcccccCccccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHH----------------------
Confidence 3444 567888999999999999999999865 99999999999999988887663
Q ss_pred ccccccchhhhhhhhccccceeeeeeeehheecccceEEEe------eccceeecchhhHHhhccCCc
Q psy12535 112 SALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLL------EKGSVEAFGTTTQLLASGLDF 173 (209)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L------~~G~i~~~G~~~~l~~~~~~~ 173 (209)
+..+...|+|||+|||+++.+..||+|++| ++|+|++.|+++++......+
T Consensus 909 -----------L~~L~~~G~TVIvisHdl~~i~~aDrIivL~p~gg~~~G~Iv~~G~~~el~~~~~~~ 965 (993)
T 2ygr_A 909 -----------INGLVDKGNTVIVIEHNLDVIKTSDWIIDLGPEGGAGGGTVVAQGTPEDVAAVPASY 965 (993)
T ss_dssp -----------HHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSTTSCSEEEEEECHHHHHHCTTCH
T ss_pred -----------HHHHHhCCCEEEEEcCCHHHHHhCCEEEEECCCcCCCCCEEEEecCHHHHHhCCHHH
Confidence 333334589999999999998789999999 689999999999998765444
No 61
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.79 E-value=2e-20 Score=176.19 Aligned_cols=87 Identities=22% Similarity=0.344 Sum_probs=72.7
Q ss_pred CceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccc
Q psy12535 37 DRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGV 116 (209)
Q Consensus 37 ~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (209)
+.........+|||||||||+|||||+.+|+||||||||++||+.....+++.
T Consensus 148 l~~~~~~~~~~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~--------------------------- 200 (538)
T 1yqt_A 148 LENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARA--------------------------- 200 (538)
T ss_dssp CTTTTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHH---------------------------
T ss_pred CChhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHH---------------------------
Confidence 33445667789999999999999999999999999999999999988887663
Q ss_pred cchhhhhhhhccccceeeeeeeehheecc-cceEEEeeccc
Q psy12535 117 RGALSLVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGS 156 (209)
Q Consensus 117 ~~~~~~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~ 156 (209)
++.....|+|||+|||+++.+.. ||+|++|++|.
T Consensus 201 ------L~~l~~~g~tvi~vsHd~~~~~~~~dri~vl~~~~ 235 (538)
T 1yqt_A 201 ------IRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVYGEP 235 (538)
T ss_dssp ------HHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEET
T ss_pred ------HHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCcc
Confidence 33333358899999999998865 89999998764
No 62
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.78 E-value=4e-20 Score=176.63 Aligned_cols=88 Identities=22% Similarity=0.349 Sum_probs=73.2
Q ss_pred CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535 36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG 115 (209)
Q Consensus 36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (209)
|+.........+|||||||||+|||||+.+|+||||||||++||+.+...+++.
T Consensus 217 gL~~~~~~~~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~-------------------------- 270 (607)
T 3bk7_A 217 ELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARV-------------------------- 270 (607)
T ss_dssp TCTTGGGSBGGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHH--------------------------
T ss_pred CCCchhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHH--------------------------
Confidence 344455677889999999999999999999999999999999999988877663
Q ss_pred ccchhhhhhhhccccceeeeeeeehheecc-cceEEEeeccc
Q psy12535 116 VRGALSLVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGS 156 (209)
Q Consensus 116 ~~~~~~~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~ 156 (209)
++.....|+|||+|||+++.+.. +|+|++|+++.
T Consensus 271 -------L~~l~~~g~tvIivsHdl~~~~~~adri~vl~~~~ 305 (607)
T 3bk7_A 271 -------IRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGEP 305 (607)
T ss_dssp -------HHHHHHTTCEEEEECSCHHHHHHHCSEEEEEESCT
T ss_pred -------HHHHHhcCCEEEEEecChHHHHhhCCEEEEECCCc
Confidence 33333358899999999998765 79999998653
No 63
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.78 E-value=5.5e-20 Score=182.94 Aligned_cols=96 Identities=23% Similarity=0.377 Sum_probs=84.3
Q ss_pred ecccceecCCccchhhhhHHHHhhhc--ceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccc
Q psy12535 41 VGDKGVSLSGGQRARISLARAVYKRA--DVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRG 118 (209)
Q Consensus 41 vg~~g~~LSgGqrQRlaiARal~~~p--~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (209)
+++...+|||||+|||+||++|..+| +||||||||++||+.....+++.
T Consensus 498 ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~----------------------------- 548 (972)
T 2r6f_A 498 LSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIAT----------------------------- 548 (972)
T ss_dssp SSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHH-----------------------------
T ss_pred cCCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHH-----------------------------
Confidence 56778899999999999999999985 99999999999999888877663
Q ss_pred hhhhhhhhccccceeeeeeeehheecccceEEEe------eccceeecchhhHHhhc
Q psy12535 119 ALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLL------EKGSVEAFGTTTQLLAS 169 (209)
Q Consensus 119 ~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L------~~G~i~~~G~~~~l~~~ 169 (209)
++.+...|+|||+|+|+++.+..||+|++| ++|++++.|+++++...
T Consensus 549 ----L~~Lr~~G~TVIvVeHdl~~i~~ADrIi~LgpgaG~~gG~iv~~G~~~e~~~~ 601 (972)
T 2r6f_A 549 ----LKSMRDLGNTLIVVEHDEDTMLAADYLIDIGPGAGIHGGEVVAAGTPEEVMND 601 (972)
T ss_dssp ----HHHHHTTTCEEEEECCCHHHHHSCSEEEEECSSSGGGCCSEEEEECTTTTTTC
T ss_pred ----HHHHHhCCCEEEEEecCHHHHHhCCEEEEeCCCccCCCCEEEEecCHHHHHhh
Confidence 333344689999999999998889999999 79999999999998764
No 64
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.78 E-value=5.8e-20 Score=175.61 Aligned_cols=90 Identities=22% Similarity=0.338 Sum_probs=75.2
Q ss_pred CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535 36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG 115 (209)
Q Consensus 36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (209)
|++........+|||||||||+|||||+.+|+|||||||||+||+.....+++
T Consensus 210 gl~~~~~~~~~~LSgGe~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~--------------------------- 262 (608)
T 3j16_B 210 QLENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQ--------------------------- 262 (608)
T ss_dssp TCTGGGGSCTTTCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHH---------------------------
T ss_pred CCcchhCCChHHCCHHHHHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHH---------------------------
Confidence 34445566778999999999999999999999999999999999988877766
Q ss_pred ccchhhhhhhhccccceeeeeeeehheecc-cceEEEeecccee
Q psy12535 116 VRGALSLVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGSVE 158 (209)
Q Consensus 116 ~~~~~~~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~ 158 (209)
+++.+..+|+|||+|||+++.+.. +|+|++|++|...
T Consensus 263 ------~l~~l~~~g~tvi~vtHdl~~~~~~~drv~vl~~~~~~ 300 (608)
T 3j16_B 263 ------IIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVPSV 300 (608)
T ss_dssp ------HHHGGGTTTCEEEEECSCHHHHHHHCSEEEEEESCTTT
T ss_pred ------HHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCccc
Confidence 333334468899999999999875 8999999887654
No 65
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.77 E-value=5.6e-20 Score=173.36 Aligned_cols=87 Identities=26% Similarity=0.405 Sum_probs=72.9
Q ss_pred CceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccc
Q psy12535 37 DRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGV 116 (209)
Q Consensus 37 ~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (209)
+.........+|||||||||+|||||+.+|+|||||||||+||+.....+++
T Consensus 128 l~~~~~~~~~~LSgGe~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~---------------------------- 179 (538)
T 3ozx_A 128 MTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAK---------------------------- 179 (538)
T ss_dssp CGGGTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHH----------------------------
T ss_pred CchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHH----------------------------
Confidence 3444566778999999999999999999999999999999999998877766
Q ss_pred cchhhhhhhhccccceeeeeeeehheecc-cceEEEeeccce
Q psy12535 117 RGALSLVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGSV 157 (209)
Q Consensus 117 ~~~~~~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i 157 (209)
+++.+. +++|||+|||+++.+.. ||+|++|++|..
T Consensus 180 -----~l~~l~-~g~tii~vsHdl~~~~~~~d~i~vl~~~~~ 215 (538)
T 3ozx_A 180 -----AIRELL-KNKYVIVVDHDLIVLDYLTDLIHIIYGESS 215 (538)
T ss_dssp -----HHHHHC-TTSEEEEECSCHHHHHHHCSEEEEEEEETT
T ss_pred -----HHHHHh-CCCEEEEEEeChHHHHhhCCEEEEecCCcc
Confidence 333333 38999999999998865 799999987654
No 66
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.77 E-value=7.8e-20 Score=182.26 Aligned_cols=101 Identities=24% Similarity=0.389 Sum_probs=86.4
Q ss_pred CCcee-ecccceecCCccchhhhhHHHHhhh--cceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcc
Q psy12535 36 GDRTL-VGDKGVSLSGGQRARISLARAVYKR--ADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGS 112 (209)
Q Consensus 36 g~~t~-vg~~g~~LSgGqrQRlaiARal~~~--p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (209)
|+..+ +++...+|||||+|||+||++|..+ |+||||||||++||+.....+++.
T Consensus 509 GL~~l~l~r~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~----------------------- 565 (993)
T 2ygr_A 509 GLEYLSLSRAAATLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIET----------------------- 565 (993)
T ss_dssp TGGGSCTTCBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCHHHHHHHHHH-----------------------
T ss_pred CCCccccCCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEeCcccCCCHHHHHHHHHH-----------------------
Confidence 44433 5677889999999999999999998 589999999999999888887663
Q ss_pred cccccchhhhhhhhccccceeeeeeeehheecccceEEEe------eccceeecchhhHHhhc
Q psy12535 113 ALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLL------EKGSVEAFGTTTQLLAS 169 (209)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L------~~G~i~~~G~~~~l~~~ 169 (209)
++.+...|+|||+|+|+++.+..||+|++| ++|++++.|+++++...
T Consensus 566 ----------L~~Lr~~G~TVIvVeHdl~~i~~ADrIi~Lgp~aG~~gG~iv~~G~~~e~~~~ 618 (993)
T 2ygr_A 566 ----------LTRLRDLGNTLIVVEHDEDTIEHADWIVDIGPGAGEHGGRIVHSGPYDELLRN 618 (993)
T ss_dssp ----------HHHHHHTTCEEEEECCCHHHHHTCSEEEEECSSSGGGCCSCCEEECHHHHHHC
T ss_pred ----------HHHHHHcCCEEEEECCCHHHHHhCCEEEEecCccccCCCEEEEeeCHHHhhhh
Confidence 333344689999999999998889999999 79999999999999875
No 67
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.77 E-value=9.4e-20 Score=181.85 Aligned_cols=94 Identities=27% Similarity=0.383 Sum_probs=81.4
Q ss_pred eecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccch
Q psy12535 40 LVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGA 119 (209)
Q Consensus 40 ~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (209)
.......+||||||||++|||||+.+|+||||||||++||+.+...+.+.
T Consensus 541 ~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~------------------------------ 590 (986)
T 2iw3_A 541 MIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNY------------------------------ 590 (986)
T ss_dssp HHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHH------------------------------
T ss_pred hhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHH------------------------------
Confidence 44567789999999999999999999999999999999999888777652
Q ss_pred hhhhhhhccccceeeeeeeehheecc-cceEEEeecccee-ecchhhHHhhc
Q psy12535 120 LSLVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGSVE-AFGTTTQLLAS 169 (209)
Q Consensus 120 ~~~~~~~~~~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~-~~G~~~~l~~~ 169 (209)
++. .+.|||+|||+++.+.. ||+|++|++|+++ ..|+++++...
T Consensus 591 ---L~~---~g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~~~e~~~~ 636 (986)
T 2iw3_A 591 ---LNT---CGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFVKK 636 (986)
T ss_dssp ---HHH---SCSEEEEECSCHHHHHHHCSEEEEEETTEEEEEESCHHHHHHH
T ss_pred ---HHh---CCCEEEEEECCHHHHHHhCCEEEEEECCeeecCCCCHHHHHhh
Confidence 323 47899999999999865 8999999999997 68999988653
No 68
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.76 E-value=1.4e-19 Score=178.32 Aligned_cols=101 Identities=20% Similarity=0.328 Sum_probs=86.5
Q ss_pred CCcee-ecccceecCCccchhhhhHHHHhhhc--ceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcc
Q psy12535 36 GDRTL-VGDKGVSLSGGQRARISLARAVYKRA--DVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGS 112 (209)
Q Consensus 36 g~~t~-vg~~g~~LSgGqrQRlaiARal~~~p--~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (209)
|+..+ +++...+|||||+|||+||++|+.+| .||||||||++||+.....+++.
T Consensus 367 GL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~----------------------- 423 (842)
T 2vf7_A 367 GLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSA----------------------- 423 (842)
T ss_dssp TCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHH-----------------------
T ss_pred CCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHH-----------------------
Confidence 44433 57788899999999999999999999 49999999999999888877663
Q ss_pred cccccchhhhhhhhccccceeeeeeeehheecccceEEEe------eccceeecchhhHHhhc
Q psy12535 113 ALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLL------EKGSVEAFGTTTQLLAS 169 (209)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L------~~G~i~~~G~~~~l~~~ 169 (209)
++.+...|+|||+|+|+++.+..||+|++| ++|++++.|+++++.+.
T Consensus 424 ----------l~~L~~~G~TVIvVeHdl~~l~~aD~ii~lgpgaG~~~G~iv~~g~~~~~~~~ 476 (842)
T 2vf7_A 424 ----------LENLKRGGNSLFVVEHDLDVIRRADWLVDVGPEAGEKGGEILYSGPPEGLKHV 476 (842)
T ss_dssp ----------HHHHHTTTCEEEEECCCHHHHTTCSEEEEECSSSGGGCCSEEEEECGGGGGGC
T ss_pred ----------HHHHHHcCCEEEEEcCCHHHHHhCCEEEEeCCCcccCCCEEEEecCHHHHHhc
Confidence 333344689999999999988889999999 79999999999998765
No 69
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.74 E-value=7.7e-19 Score=157.60 Aligned_cols=79 Identities=20% Similarity=0.283 Sum_probs=69.5
Q ss_pred cCCccchhhhhHHHHhhhc--ceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhhhhh
Q psy12535 48 LSGGQRARISLARAVYKRA--DVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRT 125 (209)
Q Consensus 48 LSgGqrQRlaiARal~~~p--~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (209)
|||||||||+|||+|+.+| +||||||||++||+.+...+.+. ++.
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~---------------------------------L~~ 342 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQ---------------------------------LSR 342 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHH---------------------------------HHH
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHH---------------------------------HHH
Confidence 7999999999999999999 99999999999999988888663 333
Q ss_pred hccccceeeeeeeehheecccceEEEe----eccceeec
Q psy12535 126 SFLKEKTVMLITHQIQYLTHVDHVMLL----EKGSVEAF 160 (209)
Q Consensus 126 ~~~~~~TiIvitH~l~~l~~~DrV~~L----~~G~i~~~ 160 (209)
.. +++|||+|||+++.+..||++++| ++|+++..
T Consensus 343 l~-~~~~vi~itH~~~~~~~~d~i~~l~k~~~~G~~~~~ 380 (415)
T 4aby_A 343 LA-DTRQVLVVTHLAQIAARAHHHYKVEKQVEDGRTVSH 380 (415)
T ss_dssp HT-TTSEEEEECSCHHHHTTCSEEEEEEEEEETTEEEEE
T ss_pred Hh-CCCEEEEEeCcHHHHhhcCeEEEEEEeccCCceEEE
Confidence 33 588999999999888889999999 99988754
No 70
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.73 E-value=5.4e-19 Score=176.39 Aligned_cols=85 Identities=25% Similarity=0.429 Sum_probs=71.3
Q ss_pred cccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhh
Q psy12535 42 GDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALS 121 (209)
Q Consensus 42 g~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (209)
...+.+|||||||||+|||||+.+|+||||||||++||+.+...+.+.
T Consensus 896 ~~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~-------------------------------- 943 (986)
T 2iw3_A 896 HSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKA-------------------------------- 943 (986)
T ss_dssp HSCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHH--------------------------------
T ss_pred CCCccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHH--------------------------------
Confidence 556789999999999999999999999999999999999887766553
Q ss_pred hhhhhccccceeeeeeeehheec-ccceEEEeeccceeecch
Q psy12535 122 LVRTSFLKEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGT 162 (209)
Q Consensus 122 ~~~~~~~~~~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~ 162 (209)
++. .+.|||+|||+++++. .||+|++|++|+++..|+
T Consensus 944 -L~~---~g~tVIiISHD~e~v~~l~DrVivL~~G~Iv~~G~ 981 (986)
T 2iw3_A 944 -LKE---FEGGVIIITHSAEFTKNLTEEVWAVKDGRMTPSGH 981 (986)
T ss_dssp -HHS---CSSEEEEECSCHHHHTTTCCEEECCBTTBCCC---
T ss_pred -HHH---hCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 222 2569999999999986 589999999999988774
No 71
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.67 E-value=2.9e-17 Score=144.37 Aligned_cols=82 Identities=24% Similarity=0.316 Sum_probs=67.0
Q ss_pred ccceecCCccchhhhhHHHHh----hhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccc
Q psy12535 43 DKGVSLSGGQRARISLARAVY----KRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRG 118 (209)
Q Consensus 43 ~~g~~LSgGqrQRlaiARal~----~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (209)
..+..||+|||||++|||||+ .+|+||||||||++||+.....+++.
T Consensus 215 ~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~----------------------------- 265 (322)
T 1e69_A 215 QKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRL----------------------------- 265 (322)
T ss_dssp CBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHH-----------------------------
T ss_pred CchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHH-----------------------------
Confidence 356799999999999999997 57899999999999999888777663
Q ss_pred hhhhhhhhccccceeeeeeeehheecccceE--EEeecccee
Q psy12535 119 ALSLVRTSFLKEKTVMLITHQIQYLTHVDHV--MLLEKGSVE 158 (209)
Q Consensus 119 ~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV--~~L~~G~i~ 158 (209)
++.. .+++|+|+|||+.+.+..||++ ++|.+|...
T Consensus 266 ----l~~~-~~~~~vi~~tH~~~~~~~~d~~~~v~~~~g~s~ 302 (322)
T 1e69_A 266 ----LKEN-SKHTQFIVITHNKIVMEAADLLHGVTMVNGVSA 302 (322)
T ss_dssp ----HHHH-TTTSEEEEECCCTTGGGGCSEEEEEEESSSCEE
T ss_pred ----HHHh-cCCCeEEEEECCHHHHhhCceEEEEEEeCCEEE
Confidence 2232 2478999999998777778986 788887553
No 72
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.66 E-value=2.5e-17 Score=153.50 Aligned_cols=78 Identities=21% Similarity=0.259 Sum_probs=66.8
Q ss_pred cceec-CCccchhhhhHHHHhhhc--ceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchh
Q psy12535 44 KGVSL-SGGQRARISLARAVYKRA--DVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGAL 120 (209)
Q Consensus 44 ~g~~L-SgGqrQRlaiARal~~~p--~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (209)
....| ||||+|||+|||||+.+| ++|||||||+|||+.+...+.+.
T Consensus 393 ~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~------------------------------- 441 (517)
T 4ad8_A 393 PLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQ------------------------------- 441 (517)
T ss_dssp BSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHH-------------------------------
T ss_pred cHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHH-------------------------------
Confidence 34577 999999999999999999 99999999999999988877663
Q ss_pred hhhhhhccccceeeeeeeehheecccceEEEeecc
Q psy12535 121 SLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKG 155 (209)
Q Consensus 121 ~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G 155 (209)
++... +++|||+|||+++.+..||++++|.++
T Consensus 442 --l~~~~-~~~~vi~itH~~~~~~~~d~~~~~~~~ 473 (517)
T 4ad8_A 442 --LSRLA-DTRQVLVVTHLAQIAARAHHHYKVEKQ 473 (517)
T ss_dssp --HHHHH-HHSEEEEECCCHHHHHHSSEEEEEECC
T ss_pred --HHHHh-CCCEEEEEecCHHHHHhCCEEEEEecc
Confidence 23323 378999999999988889999999655
No 73
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.64 E-value=6.8e-17 Score=143.08 Aligned_cols=78 Identities=23% Similarity=0.373 Sum_probs=64.4
Q ss_pred ccceecCCccch------hhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccc
Q psy12535 43 DKGVSLSGGQRA------RISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGV 116 (209)
Q Consensus 43 ~~g~~LSgGqrQ------RlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (209)
.....||||||| |+++||+++.+|++|||||||++||+.....+++.
T Consensus 244 ~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~--------------------------- 296 (339)
T 3qkt_A 244 RPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITI--------------------------- 296 (339)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHH---------------------------
T ss_pred CChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHH---------------------------
Confidence 456789999999 67788888899999999999999999888877663
Q ss_pred cchhhhhhhhccccceeeeeeeehheecccceEEEee
Q psy12535 117 RGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLE 153 (209)
Q Consensus 117 ~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~ 153 (209)
+......++|||+|||+.+....||+|++|+
T Consensus 297 ------l~~~~~~~~~vi~~sH~~~~~~~~d~~~~l~ 327 (339)
T 3qkt_A 297 ------MERYLKKIPQVILVSHDEELKDAADHVIRIS 327 (339)
T ss_dssp ------HHHTGGGSSEEEEEESCGGGGGGCSEEEEEE
T ss_pred ------HHHHHhcCCEEEEEEChHHHHHhCCEEEEEE
Confidence 2222335789999999987767789999996
No 74
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.64 E-value=8.3e-17 Score=131.47 Aligned_cols=80 Identities=24% Similarity=0.307 Sum_probs=64.6
Q ss_pred ccceecCCccchhhhhHHHHhhh----cceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccc
Q psy12535 43 DKGVSLSGGQRARISLARAVYKR----ADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRG 118 (209)
Q Consensus 43 ~~g~~LSgGqrQRlaiARal~~~----p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (209)
.....||||||||++|||+++.+ |+++||||||++||+.+...+.+.+
T Consensus 60 ~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l---------------------------- 111 (173)
T 3kta_B 60 KRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLI---------------------------- 111 (173)
T ss_dssp CCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHH----------------------------
T ss_pred cccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHH----------------------------
Confidence 34578999999999999999865 5999999999999999888876632
Q ss_pred hhhhhhhhccccceeeeeeeehheecccceEEEe--eccc
Q psy12535 119 ALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLL--EKGS 156 (209)
Q Consensus 119 ~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L--~~G~ 156 (209)
+.. .++.++|+|||+...+..||+++.+ .+|.
T Consensus 112 -----~~~-~~~~~~ivith~~~~~~~ad~i~~v~~~~g~ 145 (173)
T 3kta_B 112 -----KES-SKESQFIVITLRDVMMANADKIIGVSMRDGV 145 (173)
T ss_dssp -----HHH-TTTSEEEEECSCHHHHTTCSEEEEEEEETTE
T ss_pred -----HHh-ccCCEEEEEEecHHHHHhCCEEEEEEecCCE
Confidence 222 2356899999998888889999865 4554
No 75
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.63 E-value=5.6e-17 Score=146.14 Aligned_cols=85 Identities=16% Similarity=0.145 Sum_probs=71.9
Q ss_pred ccce-ecCCccchhhhhHHHHh---------hhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcc
Q psy12535 43 DKGV-SLSGGQRARISLARAVY---------KRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGS 112 (209)
Q Consensus 43 ~~g~-~LSgGqrQRlaiARal~---------~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (209)
..+. .||||||||++||++|+ .+|+|||||||||+||+.....+++.+
T Consensus 260 ~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l---------------------- 317 (359)
T 2o5v_A 260 FPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLA---------------------- 317 (359)
T ss_dssp EEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHH----------------------
T ss_pred cchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHH----------------------
Confidence 3445 69999999999999999 899999999999999999888887632
Q ss_pred cccccchhhhhhhhccccceeeeeeeehheecccceEEEeeccceeecchhhHH
Q psy12535 113 ALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQL 166 (209)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l 166 (209)
... ..|+|++|| ++. .+|+|++|++|+|+..|+++++
T Consensus 318 -----------~~~---~qt~i~~th-~~~--~~~~i~~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 318 -----------ASV---PQAIVTGTE-LAP--GAALTLRAQAGRFTPVADEEMQ 354 (359)
T ss_dssp -----------HHS---SEEEEEESS-CCT--TCSEEEEEETTEEEECCCTTTS
T ss_pred -----------Hhc---CcEEEEEEe-ccc--cCCEEEEEECCEEEecCCHHHH
Confidence 221 269999999 343 7899999999999999998876
No 76
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.60 E-value=1.4e-16 Score=147.69 Aligned_cols=85 Identities=11% Similarity=0.094 Sum_probs=69.6
Q ss_pred ceecCCccchhhhhHHH--Hhhhcce----eeccC-cchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccccc
Q psy12535 45 GVSLSGGQRARISLARA--VYKRADV----YLLDD-PLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVR 117 (209)
Q Consensus 45 g~~LSgGqrQRlaiARa--l~~~p~i----llLDE-Pts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (209)
+.+|||||||||+|||| |+.+|++ ||||| ||++||+. ...+.+
T Consensus 233 ~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~----------------------------- 282 (460)
T 2npi_A 233 NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHH----------------------------- 282 (460)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHH-----------------------------
T ss_pred hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh-HHHHHH-----------------------------
Confidence 56999999999999999 9999999 99999 99999997 332222
Q ss_pred chhhhhhhhccccceeeeeeeehh------eec-ccce-----EEEee-ccceeecchhhHHh
Q psy12535 118 GALSLVRTSFLKEKTVMLITHQIQ------YLT-HVDH-----VMLLE-KGSVEAFGTTTQLL 167 (209)
Q Consensus 118 ~~~~~~~~~~~~~~TiIvitH~l~------~l~-~~Dr-----V~~L~-~G~i~~~G~~~~l~ 167 (209)
+++. .+.|+|+|||+.+ .+. .+|+ |++|+ +|+|+ .|+++++.
T Consensus 283 ----l~~~---~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~~~~ 337 (460)
T 2npi_A 283 ----IIEK---LNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDVYKR 337 (460)
T ss_dssp ----HHHH---TTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHHHHH
T ss_pred ----HHHH---hCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHHHHh
Confidence 1111 2679999999887 444 4799 99999 99999 89888774
No 77
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.58 E-value=3.4e-16 Score=125.58 Aligned_cols=97 Identities=8% Similarity=-0.024 Sum_probs=63.2
Q ss_pred CCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccc
Q psy12535 35 SGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSAL 114 (209)
Q Consensus 35 ~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (209)
.|+.+.+... ...|+|||||++||||++.+|++|+|||||++||+.++..+-.. .+...-..
T Consensus 72 ~g~~~~~~~~-~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~-----------------~~~~vi~~ 133 (171)
T 4gp7_A 72 LGKLTVVDAT-NVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQ-----------------VEEYVIRK 133 (171)
T ss_dssp TTCCEEEESC-CCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCC-----------------CCHHHHHH
T ss_pred CCCeEEEECC-CCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCC-----------------CCHHHHHH
Confidence 3555555443 35699999999999999999999999999999999855332000 00000000
Q ss_pred cccchhhhhhhhccccceeeeeeeehheecccceE
Q psy12535 115 GVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHV 149 (209)
Q Consensus 115 ~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV 149 (209)
.+..+.++++....+|.|+|+|||+++.+..++++
T Consensus 134 ~~~~l~~~l~~l~~~g~tvi~vtH~~~~~~~~~~~ 168 (171)
T 4gp7_A 134 HTQQMKKSIKGLQREGFRYVYILNSPEEVEEVVFE 168 (171)
T ss_dssp HHHHHHHHSTTHHHHTCSEEEEECSHHHHHHEEEE
T ss_pred HHHHhhhhhhhHHhcCCcEEEEeCCHHHhhhhhhc
Confidence 11122234444444689999999999988766553
No 78
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.50 E-value=7.7e-15 Score=133.44 Aligned_cols=77 Identities=17% Similarity=0.205 Sum_probs=64.0
Q ss_pred ceecCCccchhhhhHHHHh----hhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchh
Q psy12535 45 GVSLSGGQRARISLARAVY----KRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGAL 120 (209)
Q Consensus 45 g~~LSgGqrQRlaiARal~----~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (209)
+..||||||||++||++|+ .+|+++||||||++||+.....+.+.
T Consensus 331 ~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~------------------------------- 379 (430)
T 1w1w_A 331 MEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAY------------------------------- 379 (430)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHH-------------------------------
T ss_pred cccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHH-------------------------------
Confidence 4569999999999999999 47999999999999999888777663
Q ss_pred hhhhhhccccceeeeeeeehheecccceEEEeec
Q psy12535 121 SLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEK 154 (209)
Q Consensus 121 ~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~ 154 (209)
+.....++.++|+|||+...+..||++++|..
T Consensus 380 --l~~~~~~~~~~ii~th~~~~~~~~d~~~~~~~ 411 (430)
T 1w1w_A 380 --IRRHRNPDLQFIVISLKNTMFEKSDALVGVYR 411 (430)
T ss_dssp --HHHHCBTTBEEEEECSCHHHHTTCSEEEEEEE
T ss_pred --HHHHhcCCCEEEEEECCHHHHHhCCEEEEEEE
Confidence 22222346799999999887778999999964
No 79
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.48 E-value=4.7e-15 Score=120.76 Aligned_cols=50 Identities=18% Similarity=0.264 Sum_probs=44.8
Q ss_pred eeecccceecCCccchhhhhHHH-----HhhhcceeeccC--cchhhhhhhhhhhhh
Q psy12535 39 TLVGDKGVSLSGGQRARISLARA-----VYKRADVYLLDD--PLSAVDAHVGKHLFE 88 (209)
Q Consensus 39 t~vg~~g~~LSgGqrQRlaiARa-----l~~~p~illLDE--Pts~LD~~~~~~~~~ 88 (209)
..+++.+.+||||||||++|||| ++.+|+++|||| ||++||+...+.+.+
T Consensus 68 ~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~ 124 (178)
T 1ye8_A 68 KLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQ 124 (178)
T ss_dssp SEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHH
T ss_pred ccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHH
Confidence 46788889999999999999996 999999999999 999999987766655
No 80
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.47 E-value=2.1e-14 Score=128.45 Aligned_cols=76 Identities=24% Similarity=0.340 Sum_probs=61.9
Q ss_pred ceecCCccchhh------hhHHHHhhh-cceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccccc
Q psy12535 45 GVSLSGGQRARI------SLARAVYKR-ADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVR 117 (209)
Q Consensus 45 g~~LSgGqrQRl------aiARal~~~-p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (209)
...|||||+||+ ++||+++.+ |++|||||||++||+.....+.+.+
T Consensus 278 ~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l--------------------------- 330 (371)
T 3auy_A 278 IDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIF--------------------------- 330 (371)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHH---------------------------
T ss_pred hHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHH---------------------------
Confidence 468999999988 567999999 9999999999999999888876632
Q ss_pred chhhhhhhhccccceeeeeeeehheecccceEEEeec
Q psy12535 118 GALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEK 154 (209)
Q Consensus 118 ~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~ 154 (209)
... ..+.+||+|||+++....+|++++|++
T Consensus 331 ------~~~-~~~~~vi~~th~~~~~~~~d~~~~l~k 360 (371)
T 3auy_A 331 ------RKV-KSIPQMIIITHHRELEDVADVIINVKK 360 (371)
T ss_dssp ------HHC-CSCSEEEEEESCGGGGGGCSEEEEEEE
T ss_pred ------HHh-ccCCeEEEEEChHHHHhhCCEEEEEEe
Confidence 221 234689999999886556899999973
No 81
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.45 E-value=2.4e-15 Score=133.01 Aligned_cols=92 Identities=15% Similarity=0.135 Sum_probs=72.8
Q ss_pred chhhhcc-CCCCCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCcccc
Q psy12535 26 LKEDFAQ-LPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSR 104 (209)
Q Consensus 26 l~~~i~~-lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (209)
+.+++.. +|.|++ |..|||||||| |||++++|+||| ||+||+.+...+.
T Consensus 184 ~~~~i~~~L~~gld------g~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i~----------------- 233 (305)
T 2v9p_A 184 CWRYFDTYLRNALD------GYPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRYL----------------- 233 (305)
T ss_dssp HHHHHHHTTTGGGG------TCCEECCCSSC---CCCEECCCCEEE----EESSCSTTCGGGG-----------------
T ss_pred HHHHHHHHhHccCC------ccCcCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHHH-----------------
Confidence 4566776 888776 67999999999 999999999999 9999997655441
Q ss_pred chhhhhcccccccchhhhhhhhccccceeeeeeeehheecccceEEEeeccceeecchhhHHhhccCCchhccCCCc
Q psy12535 105 WGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGLDFTQLLDAPE 181 (209)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~~~~~~~~~~~~~~~ 181 (209)
.+||+++.+..+|+| +|++|+|++.|+++++ ...|..++....
T Consensus 234 ------------------------------~ltH~~~~~~~aD~i-vl~~G~iv~~g~~~el---~~~y~~l~~~~~ 276 (305)
T 2v9p_A 234 ------------------------------YLHSRVQTFRFEQPC-TDESGEQPFNITDADW---KSFFVRLWGRLD 276 (305)
T ss_dssp ------------------------------GGTTTEEEEECCCCC-CCC---CCCCCCHHHH---HHHHHHSTTTTT
T ss_pred ------------------------------HHhCCHHHHHhCCEE-EEeCCEEEEeCCHHHH---HHHHHHHHHHcc
Confidence 128999998899999 9999999999999999 345666666543
No 82
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.37 E-value=9.2e-14 Score=116.00 Aligned_cols=66 Identities=11% Similarity=0.019 Sum_probs=43.3
Q ss_pred ccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhhhhhhcccc
Q psy12535 51 GQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKE 130 (209)
Q Consensus 51 GqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (209)
||||||+|||||+.+|+||||||||++ +...+.+ ++... .++
T Consensus 108 Gq~qrv~lAraL~~~p~lllLDEPts~----~~~~l~~---------------------------------~l~~l-~~g 149 (208)
T 3b85_A 108 VEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQMKM---------------------------------FLTRL-GFG 149 (208)
T ss_dssp EEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHHHH---------------------------------HHTTB-CTT
T ss_pred chHHHHHHHHHHhcCCCEEEEeCCccc----cHHHHHH---------------------------------HHHHh-cCC
Confidence 999999999999999999999999999 4445544 23333 357
Q ss_pred ceeeeeeeehheecccceEEEeecccee
Q psy12535 131 KTVMLITHQIQYLTHVDHVMLLEKGSVE 158 (209)
Q Consensus 131 ~TiIvitH~l~~l~~~DrV~~L~~G~i~ 158 (209)
+||| +||+++.+.. +...++|...
T Consensus 150 ~tii-vtHd~~~~~~---~~~~~~G~~~ 173 (208)
T 3b85_A 150 SKMV-VTGDITQVDL---PGGQKSGLRL 173 (208)
T ss_dssp CEEE-EEEC---------------CCHH
T ss_pred CEEE-EECCHHHHhC---cCCCCCcHHH
Confidence 8999 9999886654 3345677553
No 83
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.33 E-value=6.4e-13 Score=123.97 Aligned_cols=87 Identities=14% Similarity=0.059 Sum_probs=69.6
Q ss_pred CCceeecccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhh-----hhhhhhhhhhhccccCCCCccccchhhhh
Q psy12535 36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAH-----VGKHLFEDCITGLHTGVPRFDSRWGRSFF 110 (209)
Q Consensus 36 g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (209)
|+.......+.+|||||+||+++|+++..+|+++|+| ||++||.. ....+.+
T Consensus 342 g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~---------------------- 398 (525)
T 1tf7_A 342 NLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIG---------------------- 398 (525)
T ss_dssp TSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHH----------------------
T ss_pred CCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHH----------------------
Confidence 3444555667789999999999999999999999999 99999997 4444433
Q ss_pred cccccccchhhhhhhhccccceeeeeeeeh----------heecc-cceEEEeeccc
Q psy12535 111 GSALGVRGALSLVRTSFLKEKTVMLITHQI----------QYLTH-VDHVMLLEKGS 156 (209)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~TiIvitH~l----------~~l~~-~DrV~~L~~G~ 156 (209)
+++.....|.|+|++||+. ..+.. ||+|++|++|+
T Consensus 399 -----------ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 399 -----------VTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp -----------HHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred -----------HHHHHHhCCCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 3333344689999999998 66664 79999999987
No 84
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.02 E-value=3.8e-11 Score=119.65 Aligned_cols=90 Identities=13% Similarity=0.022 Sum_probs=71.3
Q ss_pred eecCCccchhhhhHHHH--hhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhhh
Q psy12535 46 VSLSGGQRARISLARAV--YKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLV 123 (209)
Q Consensus 46 ~~LSgGqrQRlaiARal--~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (209)
..+|+|++++..+|+++ +.+|+++||||||+|+|+.....+...++..
T Consensus 720 ~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~------------------------------ 769 (934)
T 3thx_A 720 KGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEY------------------------------ 769 (934)
T ss_dssp ---CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHH------------------------------
T ss_pred HhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHH------------------------------
Confidence 36788888888888888 8999999999999999998776664433322
Q ss_pred hhhcc-ccceeeeeeeehheecccceEEEeeccceeecchhhHHh
Q psy12535 124 RTSFL-KEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLL 167 (209)
Q Consensus 124 ~~~~~-~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~ 167 (209)
... .++|+|++||+.+....+|++..+++|++...++.+++.
T Consensus 770 --l~~~~g~~vl~aTH~~el~~lad~~~~v~ng~v~~~~~~~~l~ 812 (934)
T 3thx_A 770 --IATKIGAFCMFATHFHELTALANQIPTVNNLHVTALTTEETLT 812 (934)
T ss_dssp --HHHTTCCEEEEEESCGGGGGGGGTCTTEEEEEEEEEEETTEEE
T ss_pred --HHhcCCCEEEEEcCcHHHHHHhcccceeEeeEEEEEecCCcEE
Confidence 122 488999999998888889999999999999888777653
No 85
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=98.95 E-value=1.1e-10 Score=103.57 Aligned_cols=71 Identities=13% Similarity=0.092 Sum_probs=54.6
Q ss_pred CccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhhhhhhccc
Q psy12535 50 GGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLK 129 (209)
Q Consensus 50 gGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (209)
|||+||++|||||..+|+++||||||+. . +.+ ++... ..
T Consensus 225 gg~~~r~~la~aL~~~p~ilildE~~~~---e----~~~---------------------------------~l~~~-~~ 263 (330)
T 2pt7_A 225 GNITSADCLKSCLRMRPDRIILGELRSS---E----AYD---------------------------------FYNVL-CS 263 (330)
T ss_dssp TTBCHHHHHHHHTTSCCSEEEECCCCST---H----HHH---------------------------------HHHHH-HT
T ss_pred CChhHHHHHHHHhhhCCCEEEEcCCChH---H----HHH---------------------------------HHHHH-hc
Confidence 8999999999999999999999999982 1 212 11111 23
Q ss_pred c-ceeeeeeeehheecccceEEEeeccceeecc
Q psy12535 130 E-KTVMLITHQIQYLTHVDHVMLLEKGSVEAFG 161 (209)
Q Consensus 130 ~-~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G 161 (209)
+ .|+|+++|+.+....+||+++|.+|.....+
T Consensus 264 g~~tvi~t~H~~~~~~~~dri~~l~~g~~~~~~ 296 (330)
T 2pt7_A 264 GHKGTLTTLHAGSSEEAFIRLANMSSSNSAARN 296 (330)
T ss_dssp TCCCEEEEEECSSHHHHHHHHHHHHHTSGGGTT
T ss_pred CCCEEEEEEcccHHHHHhhhheehhcCCcccCC
Confidence 4 4799999999966678999999998754333
No 86
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.82 E-value=2.2e-10 Score=104.95 Aligned_cols=42 Identities=14% Similarity=0.295 Sum_probs=39.3
Q ss_pred cCCc--cchhhhhHHHHhh----------hcceeeccCcchhhhhhhhhhhhhh
Q psy12535 48 LSGG--QRARISLARAVYK----------RADVYLLDDPLSAVDAHVGKHLFED 89 (209)
Q Consensus 48 LSgG--qrQRlaiARal~~----------~p~illLDEPts~LD~~~~~~~~~~ 89 (209)
||+| |+||++||+||+. +|++++|||||++||+.....+.+.
T Consensus 155 lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~ 208 (413)
T 1tq4_A 155 ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQD 208 (413)
T ss_dssp EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHH
T ss_pred eCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHH
Confidence 9999 9999999999999 9999999999999999988877664
No 87
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=98.76 E-value=1.1e-09 Score=108.98 Aligned_cols=82 Identities=9% Similarity=0.026 Sum_probs=60.7
Q ss_pred ccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhh
Q psy12535 43 DKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSL 122 (209)
Q Consensus 43 ~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (209)
...+.+|+||+|++.|+++ +.+|+++||||||+|+|+.....+...++..
T Consensus 731 ~~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~----------------------------- 780 (918)
T 3thx_B 731 KGRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLEY----------------------------- 780 (918)
T ss_dssp ---CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHH-----------------------------
T ss_pred HhHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHH-----------------------------
Confidence 4456899999999999999 8999999999999999998877776443322
Q ss_pred hhhhc-cccceeeeeeeehheecccceEEE-eeccce
Q psy12535 123 VRTSF-LKEKTVMLITHQIQYLTHVDHVML-LEKGSV 157 (209)
Q Consensus 123 ~~~~~-~~~~TiIvitH~l~~l~~~DrV~~-L~~G~i 157 (209)
.. ..+.|+|++||+++....+|+.-- +.++.+
T Consensus 781 ---L~~~~g~tvl~vTH~~el~~l~~~~~~~v~n~~~ 814 (918)
T 3thx_B 781 ---FIRDVKSLTLFVTHYPPVCELEKNYSHQVGNYHM 814 (918)
T ss_dssp ---HHHTTCCEEEEECSCGGGGGHHHHTTTTEEEEEE
T ss_pred ---HHHhcCCeEEEEeCcHHHHHHHhhcccceEEEEE
Confidence 11 248899999999988776665421 344444
No 88
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=98.71 E-value=5.4e-09 Score=89.62 Aligned_cols=78 Identities=17% Similarity=0.159 Sum_probs=50.9
Q ss_pred eecCCcc-chhhhhHHHHhhhcceeeccCcchhhh------h-hhhhhhhhhhhhccccCCCCccccchhhhhccccccc
Q psy12535 46 VSLSGGQ-RARISLARAVYKRADVYLLDDPLSAVD------A-HVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVR 117 (209)
Q Consensus 46 ~~LSgGq-rQRlaiARal~~~p~illLDEPts~LD------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (209)
..+|.++ +||+. |+++..+|+++|+||||+.++ . .....+.+
T Consensus 128 ~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~d~~~~~~~i~~----------------------------- 177 (296)
T 1cr0_A 128 AEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMT----------------------------- 177 (296)
T ss_dssp CSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----------CHHHHHHHH-----------------------------
T ss_pred CCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCCCHHHHHHHHHH-----------------------------
Confidence 4577777 67776 999999999999999999543 2 11122222
Q ss_pred chhhhhhhhcc-ccceeeeeeeeh--h--------------------eec-ccceEEEeeccce
Q psy12535 118 GALSLVRTSFL-KEKTVMLITHQI--Q--------------------YLT-HVDHVMLLEKGSV 157 (209)
Q Consensus 118 ~~~~~~~~~~~-~~~TiIvitH~l--~--------------------~l~-~~DrV~~L~~G~i 157 (209)
.++.... .+.|||++||+. + .+. .||+|++|++|+.
T Consensus 178 ----~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 178 ----KLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp ----HHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred ----HHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 3333332 388999999985 4 454 4899999999875
No 89
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=98.69 E-value=2.7e-09 Score=107.32 Aligned_cols=87 Identities=8% Similarity=0.030 Sum_probs=61.5
Q ss_pred ceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhhhh
Q psy12535 45 GVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVR 124 (209)
Q Consensus 45 g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (209)
.+.+|+++++ +++|++++.+|+++|||||++|+|+.....+...++ .
T Consensus 849 ~stf~~em~~-~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il--------------------------------~ 895 (1022)
T 2o8b_B 849 ESTFFVELSE-TASILMHATAHSLVLVDELGRGTATFDGTAIANAVV--------------------------------K 895 (1022)
T ss_dssp -CHHHHHHHH-HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHH--------------------------------H
T ss_pred hhhhHHHHHH-HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHH--------------------------------H
Confidence 3567877765 999999999999999999999999976544333222 2
Q ss_pred hhccc-cceeeeeeeehheecc-cceEEEeecccee--ecchhhH
Q psy12535 125 TSFLK-EKTVMLITHQIQYLTH-VDHVMLLEKGSVE--AFGTTTQ 165 (209)
Q Consensus 125 ~~~~~-~~TiIvitH~l~~l~~-~DrV~~L~~G~i~--~~G~~~~ 165 (209)
....+ +.|+|++||+++.+.. +|++.++ +|++. +.|.+++
T Consensus 896 ~L~~~~g~~vl~~TH~~el~~~~~d~~~v~-~g~~~~~~~~~~~~ 939 (1022)
T 2o8b_B 896 ELAETIKCRTLFSTHYHSLVEDYSQNVAVR-LGHMACMVENECED 939 (1022)
T ss_dssp HHHHTSCCEEEEECCCHHHHHHTSSCSSEE-EEEEEEC-------
T ss_pred HHHhcCCCEEEEEeCCHHHHHHhCCcceee-cCeEEEEEecCccc
Confidence 22233 7899999999998875 6888886 68887 4555443
No 90
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=98.65 E-value=4.5e-09 Score=92.16 Aligned_cols=74 Identities=12% Similarity=0.115 Sum_probs=55.2
Q ss_pred ccceecCCccchhhhhHHHHhhhcc--eeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchh
Q psy12535 43 DKGVSLSGGQRARISLARAVYKRAD--VYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGAL 120 (209)
Q Consensus 43 ~~g~~LSgGqrQRlaiARal~~~p~--illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (209)
....+|| |||++||||++.+|+ +|+|| ||+++|+.....-+.
T Consensus 200 ~~~~eLS---kqr~~iaral~~~P~e~lLvLD-ptsglD~~~~~~~~~-------------------------------- 243 (302)
T 3b9q_A 200 SLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQAREFN-------------------------------- 243 (302)
T ss_dssp HHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHHHHHHH--------------------------------
T ss_pred HHHHHHH---HHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHHHHHHH--------------------------------
Confidence 3455799 999999999999999 99999 999999864321110
Q ss_pred hhhhhhccccceeeeeee---------ehheecc-cceEEEeecccee
Q psy12535 121 SLVRTSFLKEKTVMLITH---------QIQYLTH-VDHVMLLEKGSVE 158 (209)
Q Consensus 121 ~~~~~~~~~~~TiIvitH---------~l~~l~~-~DrV~~L~~G~i~ 158 (209)
...+.|+|++|| .++.+.. ...|.++..|+.+
T Consensus 244 ------~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~~ 285 (302)
T 3b9q_A 244 ------EVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAV 285 (302)
T ss_dssp ------HHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSSG
T ss_pred ------HhcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCCh
Confidence 113789999999 3344433 4789999999764
No 91
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=98.62 E-value=2.7e-08 Score=81.84 Aligned_cols=61 Identities=16% Similarity=0.104 Sum_probs=42.0
Q ss_pred HHhhhcceeeccCcchhhh-----hhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhhhhhhccccceeee
Q psy12535 61 AVYKRADVYLLDDPLSAVD-----AHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVML 135 (209)
Q Consensus 61 al~~~p~illLDEPts~LD-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIv 135 (209)
.-..+|++++|||||+++| +.....+.+ +++.....|+|||+
T Consensus 131 l~~~~p~~lilDep~~~ld~~~d~~~~~~~l~~---------------------------------l~~~l~~~g~tii~ 177 (251)
T 2ehv_A 131 VKAINAKRLVIDSIPSIALRLEEERKIREVLLK---------------------------------LNTILLEMGVTTIL 177 (251)
T ss_dssp HHHTTCSEEEEECHHHHHHHSSSGGGHHHHHHH---------------------------------HHHHHHHHCCEEEE
T ss_pred HHhhCCCEEEEccHHHHHhhcCCHHHHHHHHHH---------------------------------HHHHHHHCCCeEEE
Confidence 3357999999999999998 333322322 33333446899999
Q ss_pred eeeehhee----------ccc-ceEEEeec
Q psy12535 136 ITHQIQYL----------THV-DHVMLLEK 154 (209)
Q Consensus 136 itH~l~~l----------~~~-DrV~~L~~ 154 (209)
+||+++.+ ..| |+|++|++
T Consensus 178 vtH~~~~~~~~~~~~~i~~~~aD~vi~l~~ 207 (251)
T 2ehv_A 178 TTEAPDPQHGKLSRYGIEEFIARGVIVLDL 207 (251)
T ss_dssp EECCC----CCSSSSSCGGGGCSEEEEEEE
T ss_pred EECCCCCCcccccccChhhEeeeEEEEEee
Confidence 99998876 357 99999964
No 92
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=98.59 E-value=1.4e-09 Score=89.22 Aligned_cols=84 Identities=14% Similarity=0.131 Sum_probs=60.4
Q ss_pred eeecccceecCCccchhh-hhHH---HHhhhcceeeccC--cchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcc
Q psy12535 39 TLVGDKGVSLSGGQRARI-SLAR---AVYKRADVYLLDD--PLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGS 112 (209)
Q Consensus 39 t~vg~~g~~LSgGqrQRl-aiAR---al~~~p~illLDE--Pts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (209)
..+++.+..+|+|||+++ ++++ |+..+|+|||||| |+..+|......+.+
T Consensus 75 ~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~------------------------ 130 (189)
T 2i3b_A 75 CRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQ------------------------ 130 (189)
T ss_dssp EESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHH------------------------
T ss_pred cccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHH------------------------
Confidence 478888999999999998 5555 6899999999999 888888754433322
Q ss_pred cccccchhhhhhhhccccceeee----eeeehheecccceEEEeeccceeec
Q psy12535 113 ALGVRGALSLVRTSFLKEKTVML----ITHQIQYLTHVDHVMLLEKGSVEAF 160 (209)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~TiIv----itH~l~~l~~~DrV~~L~~G~i~~~ 160 (209)
+ ....+|+|+ |+|+.+ ...+|+|..+.+|+|+..
T Consensus 131 ---------~----l~~~~~~ilgti~vsh~~~-~~~vd~i~~~~~~~i~~~ 168 (189)
T 2i3b_A 131 ---------T----LSTPGTIILGTIPVPKGKP-LALVEEIRNRKDVKVFNV 168 (189)
T ss_dssp ---------H----HHCSSCCEEEECCCCCSSC-CTTHHHHHTTCCSEEEEC
T ss_pred ---------H----HhCCCcEEEEEeecCCCCc-hHHHHHHeecCCcEEEEe
Confidence 1 112345553 349875 455688888888888754
No 93
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=98.58 E-value=1e-08 Score=92.30 Aligned_cols=74 Identities=12% Similarity=0.115 Sum_probs=55.1
Q ss_pred ccceecCCccchhhhhHHHHhhhcc--eeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchh
Q psy12535 43 DKGVSLSGGQRARISLARAVYKRAD--VYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGAL 120 (209)
Q Consensus 43 ~~g~~LSgGqrQRlaiARal~~~p~--illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (209)
....+|| +||++||||++.+|+ +|+|| ||+|+|+.....-+.
T Consensus 257 ~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pttglD~~~~~~~~~-------------------------------- 300 (359)
T 2og2_A 257 SLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQAREFN-------------------------------- 300 (359)
T ss_dssp HHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHHHHHH--------------------------------
T ss_pred hHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHHHHHH--------------------------------
Confidence 3445799 999999999999999 99999 999999864321111
Q ss_pred hhhhhhccccceeeeeee---------ehheecc-cceEEEeecccee
Q psy12535 121 SLVRTSFLKEKTVMLITH---------QIQYLTH-VDHVMLLEKGSVE 158 (209)
Q Consensus 121 ~~~~~~~~~~~TiIvitH---------~l~~l~~-~DrV~~L~~G~i~ 158 (209)
...+.|+|++|| .++.+.. ...|.++..|+.+
T Consensus 301 ------~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~~ 342 (359)
T 2og2_A 301 ------EVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAV 342 (359)
T ss_dssp ------HHTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSSG
T ss_pred ------HhcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCCh
Confidence 113789999999 3344433 4789999888653
No 94
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=98.54 E-value=4.1e-08 Score=79.40 Aligned_cols=76 Identities=7% Similarity=0.027 Sum_probs=54.5
Q ss_pred cCCccchhhhhHHHHhhhcc--eeeccCcchhh--hhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhhh
Q psy12535 48 LSGGQRARISLARAVYKRAD--VYLLDDPLSAV--DAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLV 123 (209)
Q Consensus 48 LSgGqrQRlaiARal~~~p~--illLDEPts~L--D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (209)
.|.++.++...+.+...+|+ ++|+||||+.+ |+.....+++. +
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~---------------------------------l 150 (235)
T 2w0m_A 104 LTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYY---------------------------------L 150 (235)
T ss_dssp CCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHH---------------------------------H
T ss_pred CCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHH---------------------------------H
Confidence 47788888877777778999 99999999988 87655555442 2
Q ss_pred hhhc-cccceeeeeeeeh--------heecc-cceEEEeeccc
Q psy12535 124 RTSF-LKEKTVMLITHQI--------QYLTH-VDHVMLLEKGS 156 (209)
Q Consensus 124 ~~~~-~~~~TiIvitH~l--------~~l~~-~DrV~~L~~G~ 156 (209)
+... ..+.|||++||+. ..+.. ||+|++|+...
T Consensus 151 ~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~~ 193 (235)
T 2w0m_A 151 KRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRMI 193 (235)
T ss_dssp HHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEEE
T ss_pred HHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEEe
Confidence 2222 2478999999998 44554 79999998753
No 95
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=98.45 E-value=2.7e-09 Score=87.22 Aligned_cols=60 Identities=5% Similarity=-0.026 Sum_probs=45.1
Q ss_pred HHhhhcceeeccCcchhh----hhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhhhhhhc-cccceeee
Q psy12535 61 AVYKRADVYLLDDPLSAV----DAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSF-LKEKTVML 135 (209)
Q Consensus 61 al~~~p~illLDEPts~L----D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~TiIv 135 (209)
+|+.+|++++|||||+++ |+.....+.+. ++... ..+.|+|+
T Consensus 137 ~l~~~p~~~~LDep~~~l~~~~d~~~~~~l~~~---------------------------------l~~l~~~~g~tvi~ 183 (207)
T 1znw_A 137 VFLAPPSWQDLQARLIGRGTETADVIQRRLDTA---------------------------------RIELAAQGDFDKVV 183 (207)
T ss_dssp EEEECSCHHHHHHHHHTTSCSCHHHHHHHHHHH---------------------------------HHHHHGGGGSSEEE
T ss_pred EEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHH---------------------------------HHHHhhhccCcEEE
Confidence 788999999999999998 66566555442 22222 24789999
Q ss_pred eeeehheec-ccceEEEee
Q psy12535 136 ITHQIQYLT-HVDHVMLLE 153 (209)
Q Consensus 136 itH~l~~l~-~~DrV~~L~ 153 (209)
|||+++.+. .||+|++|.
T Consensus 184 vtHdl~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 184 VNRRLESACAELVSLLVGT 202 (207)
T ss_dssp ECSSHHHHHHHHHHHHC--
T ss_pred ECCCHHHHHHHHHHHHHhc
Confidence 999999876 489999984
No 96
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=98.44 E-value=1.4e-09 Score=90.17 Aligned_cols=44 Identities=11% Similarity=0.109 Sum_probs=39.7
Q ss_pred eecCCccchhhhh-----HHHHhhhcceeeccCcchhhhhhhhhhhhhh
Q psy12535 46 VSLSGGQRARISL-----ARAVYKRADVYLLDDPLSAVDAHVGKHLFED 89 (209)
Q Consensus 46 ~~LSgGqrQRlai-----ARal~~~p~illLDEPts~LD~~~~~~~~~~ 89 (209)
.+|||||+||++| ||+++.+|++++|||||+++|..+...+.+.
T Consensus 121 ~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~~~~i~~~ 169 (218)
T 1z6g_A 121 MNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQEQIQKR 169 (218)
T ss_dssp ECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCCCHHHHHHH
T ss_pred ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHH
Confidence 5789999999999 8999999999999999999999877776553
No 97
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=98.44 E-value=3.3e-08 Score=96.72 Aligned_cols=64 Identities=16% Similarity=0.092 Sum_probs=50.9
Q ss_pred ecCCccchhhhhHHHH--hhhcceeeccCc---chhhhhhhh-hhhhhhhhhccccCCCCccccchhhhhcccccccchh
Q psy12535 47 SLSGGQRARISLARAV--YKRADVYLLDDP---LSAVDAHVG-KHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGAL 120 (209)
Q Consensus 47 ~LSgGqrQRlaiARal--~~~p~illLDEP---ts~LD~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (209)
.+|+|+++++.+|+++ +.+|+++||||| |+++|.... ..+.+
T Consensus 635 g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~-------------------------------- 682 (765)
T 1ewq_A 635 GKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAE-------------------------------- 682 (765)
T ss_dssp CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHH--------------------------------
T ss_pred cccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHH--------------------------------
Confidence 5789999999999999 999999999999 999998653 23433
Q ss_pred hhhhhhccccceeeeeeeehheeccc
Q psy12535 121 SLVRTSFLKEKTVMLITHQIQYLTHV 146 (209)
Q Consensus 121 ~~~~~~~~~~~TiIvitH~l~~l~~~ 146 (209)
.+.. .+.|+|++||+.+....+
T Consensus 683 -~L~~---~g~~vl~~TH~~~l~~~~ 704 (765)
T 1ewq_A 683 -ALHE---RRAYTLFATHYFELTALG 704 (765)
T ss_dssp -HHHH---HTCEEEEECCCHHHHTCC
T ss_pred -HHHh---CCCEEEEEeCCHHHHHhh
Confidence 2222 478999999998875544
No 98
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=98.42 E-value=1.1e-08 Score=94.17 Aligned_cols=81 Identities=14% Similarity=-0.045 Sum_probs=65.8
Q ss_pred cceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhhh
Q psy12535 44 KGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLV 123 (209)
Q Consensus 44 ~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (209)
....||+|| |||+|| +.+|++ |+|||+.+...+.+.+
T Consensus 255 ~l~~lS~g~-qrvslA---l~~p~~------t~glD~~~~~~l~~ll--------------------------------- 291 (438)
T 2dpy_A 255 SLTRYAMAQ-REIALA---IGEPPA------TKGYPPSVFAKLPALV--------------------------------- 291 (438)
T ss_dssp CHHHHHHHH-HHHHHH---TTCCCC------SSSCCTTHHHHHHHHH---------------------------------
T ss_pred hHHHHHHHH-HHHHHH---hCCCcc------cccCCHHHHHHHHHHH---------------------------------
Confidence 367899999 999999 888888 9999998877775522
Q ss_pred hhhcc----ccc-----eeeeeeeehheecccceEEEeeccceeecchhhHHhh
Q psy12535 124 RTSFL----KEK-----TVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLA 168 (209)
Q Consensus 124 ~~~~~----~~~-----TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~~ 168 (209)
.+... .|+ ||+++||+++ ...+|++++|.+|+|+..|++.++..
T Consensus 292 ~r~~~~~~~~GsiT~~~tVlv~tHdl~-~~iad~v~~l~dG~Ivl~~~~~~~~~ 344 (438)
T 2dpy_A 292 ERAGNGIHGGGSITAFYTVLTEGDDQQ-DPIADSARAILDGHIVLSRRLAEAGH 344 (438)
T ss_dssp TTCSCCSTTSCEEEEEEEEECSSSCSC-CHHHHHHHHHSSEEEEECHHHHHTTC
T ss_pred HHHHhccCCCCcccceeEEEEeCCCcc-chhhceEEEEeCcEEEEeCCHHHccC
Confidence 22222 254 9999999999 66789999999999999999988764
No 99
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=98.39 E-value=2.1e-08 Score=81.10 Aligned_cols=42 Identities=12% Similarity=0.136 Sum_probs=38.2
Q ss_pred echhhhcc-CCCCCceeecccceecCCccchhhhhHHHHhhhcceee
Q psy12535 25 ALKEDFAQ-LPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYL 70 (209)
Q Consensus 25 ~l~~~i~~-lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~ill 70 (209)
++.+++.. +| |++|.++|+ |||||+|||+||||++.+|++..
T Consensus 84 ~l~~~i~~~l~-g~dt~i~Eg---lSgGq~qri~lARall~~p~i~~ 126 (171)
T 2f1r_A 84 DLDWIYERYLS-DYDLVITEG---FSKAGKDRIVVVKKPEEVEHFRQ 126 (171)
T ss_dssp CHHHHHHHHTT-TCSEEEEES---CGGGCCCEEEECSSGGGGGGGCS
T ss_pred CHHHHHHhhCC-CCCEEEECC---cCCCCCcEEEEEecccCCCccCc
Confidence 77788888 99 999999995 99999999999999999999853
No 100
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=98.36 E-value=4.5e-07 Score=73.49 Aligned_cols=81 Identities=17% Similarity=0.142 Sum_probs=47.1
Q ss_pred chhhhhHHHHhh-------hcceeeccCcchhhhhhhhhh--hhhhhhhccccCCCCccccchhhhhcccccccchhhhh
Q psy12535 53 RARISLARAVYK-------RADVYLLDDPLSAVDAHVGKH--LFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLV 123 (209)
Q Consensus 53 rQRlaiARal~~-------~p~illLDEPts~LD~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (209)
++.+..+++++. +|++++||||++++|+..... ..+. ......++..+
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r-----------------------~~~~~~~~~~l 162 (231)
T 4a74_A 106 MLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAER-----------------------QQKLAKHLADL 162 (231)
T ss_dssp HHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHH-----------------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHH-----------------------HHHHHHHHHHH
Confidence 344666777766 999999999999999842110 0000 00001112233
Q ss_pred hhhc-cccceeeeeeeehh----eecc-cceEEEeeccc
Q psy12535 124 RTSF-LKEKTVMLITHQIQ----YLTH-VDHVMLLEKGS 156 (209)
Q Consensus 124 ~~~~-~~~~TiIvitH~l~----~l~~-~DrV~~L~~G~ 156 (209)
.... ..+.|||++||..+ .+.. +|++++|++|+
T Consensus 163 ~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~~ 201 (231)
T 4a74_A 163 HRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKGK 201 (231)
T ss_dssp HHHHHHHTCEEEEEEECC---------CCSEEEEEEECT
T ss_pred HHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEecC
Confidence 3332 24899999999444 4765 79999999864
No 101
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.36 E-value=5e-08 Score=90.83 Aligned_cols=67 Identities=24% Similarity=0.241 Sum_probs=48.2
Q ss_pred hHHHHh-hhcceeeccCcchh-----hhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhhhhhhccccc
Q psy12535 58 LARAVY-KRADVYLLDDPLSA-----VDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEK 131 (209)
Q Consensus 58 iARal~-~~p~illLDEPts~-----LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (209)
++.+|. .+|++++|||||+. +|+.....+++ +++.....|+
T Consensus 130 ~~~~LS~g~~~~lilDe~t~~~~~~~lD~~~~~~l~~---------------------------------ll~~l~~~g~ 176 (525)
T 1tf7_A 130 INYAIQKYRARRVSIDSVTSVFQQYDASSVVRRELFR---------------------------------LVARLKQIGA 176 (525)
T ss_dssp HHHHHHHHTCSEEEEECSTTTSTTTCCHHHHHHHHHH---------------------------------HHHHHHHHTC
T ss_pred HHHHHHHcCCCEEEECCHHHHHHhcCCHHHHHHHHHH---------------------------------HHHHHHHCCC
Confidence 344442 56778999999985 57776666655 3333334589
Q ss_pred eeeeeeeehhee---------cc-cceEEEeeccce
Q psy12535 132 TVMLITHQIQYL---------TH-VDHVMLLEKGSV 157 (209)
Q Consensus 132 TiIvitH~l~~l---------~~-~DrV~~L~~G~i 157 (209)
|||++||+++.+ .. ||+|++|++|++
T Consensus 177 tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~~~~ 212 (525)
T 1tf7_A 177 TTVMTTERIEEYGPIARYGVEEFVSDNVVILRNVLE 212 (525)
T ss_dssp EEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEEECS
T ss_pred EEEEEecCCCCccccccccceeeeeeEEEEEEEEcc
Confidence 999999999875 44 899999999553
No 102
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=98.35 E-value=1.8e-08 Score=90.01 Aligned_cols=81 Identities=19% Similarity=0.112 Sum_probs=64.9
Q ss_pred ccceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhh
Q psy12535 43 DKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSL 122 (209)
Q Consensus 43 ~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (209)
+...+||+|| |||++| +.+|++ |+|+|+.....+.+ +
T Consensus 167 d~~~~lS~g~-r~v~la---l~~p~~------t~Gldp~~~~~l~~---------------------------------l 203 (347)
T 2obl_A 167 DSVTRYARAA-RDVGLA---SGEPDV------RGGFPPSVFSSLPK---------------------------------L 203 (347)
T ss_dssp ETHHHHHHHH-HHHHHH---TTCCCC------BTTBCHHHHHHHHH---------------------------------H
T ss_pred hhHHHHHHHH-HHHHHH---cCCCCc------ccCCCHHHHHHHHH---------------------------------H
Confidence 4567899999 999999 578777 99999987766655 2
Q ss_pred hhhhc--cccc-----eeeeeeeehheecccceEEEeeccceeecchhhHHh
Q psy12535 123 VRTSF--LKEK-----TVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLL 167 (209)
Q Consensus 123 ~~~~~--~~~~-----TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~ 167 (209)
+.+.. ..|. ||+++||+++ -..||+|++|.+|+|+..++.+++.
T Consensus 204 ler~~~~~~GsiT~~~tVl~~thdl~-~~i~d~v~~i~dG~Ivl~~~l~~~~ 254 (347)
T 2obl_A 204 LERAGPAPKGSITAIYTVLLESDNVN-DPIGDEVRSILDGHIVLTRELAEEN 254 (347)
T ss_dssp HTTCEECSSSEEEEEEEEECCSSCCC-CHHHHHHHHHCSEEEEBCHHHHTTT
T ss_pred HHHHhCCCCCCeeeEEEEEEeCCCCC-ChhhhheEEeeCcEEEEeCCHHHcC
Confidence 22222 2466 9999999998 4568999999999999999998874
No 103
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.35 E-value=3.3e-07 Score=73.94 Aligned_cols=80 Identities=15% Similarity=0.092 Sum_probs=54.2
Q ss_pred ecCCcc--chhhhhHHHHhhh-cceeeccCcchhhhhhhh-----hhhhhhhhhccccCCCCccccchhhhhcccccccc
Q psy12535 47 SLSGGQ--RARISLARAVYKR-ADVYLLDDPLSAVDAHVG-----KHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRG 118 (209)
Q Consensus 47 ~LSgGq--rQRlaiARal~~~-p~illLDEPts~LD~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (209)
.+|+++ +|+++.+++++.+ |+++|+|||++.+|.... ..+.+
T Consensus 84 ~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~------------------------------ 133 (220)
T 2cvh_A 84 TPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSR------------------------------ 133 (220)
T ss_dssp CCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHH------------------------------
T ss_pred ecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHH------------------------------
Confidence 556675 4678888899986 999999999999997432 11111
Q ss_pred hhhhhhhhcc-ccceeeeeeeehh-------------eec-ccceEEEeeccc
Q psy12535 119 ALSLVRTSFL-KEKTVMLITHQIQ-------------YLT-HVDHVMLLEKGS 156 (209)
Q Consensus 119 ~~~~~~~~~~-~~~TiIvitH~l~-------------~l~-~~DrV~~L~~G~ 156 (209)
++..++.... .+.|+|+++|... .+. .+|.|++|++..
T Consensus 134 ~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~~ 186 (220)
T 2cvh_A 134 QLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKLP 186 (220)
T ss_dssp HHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEECS
T ss_pred HHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEec
Confidence 1112333322 3789999999765 233 479999998653
No 104
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=98.32 E-value=8.9e-08 Score=82.06 Aligned_cols=61 Identities=11% Similarity=0.069 Sum_probs=46.9
Q ss_pred hhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhhhhhhcccccee
Q psy12535 54 ARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTV 133 (209)
Q Consensus 54 QRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ti 133 (209)
-|++||+||..+|+++|||||| |+.+...+++ . ...|+||
T Consensus 87 l~~~la~aL~~~p~illlDEp~---D~~~~~~~l~------------------------------------~-~~~g~~v 126 (261)
T 2eyu_A 87 FADALRAALREDPDVIFVGEMR---DLETVETALR------------------------------------A-AETGHLV 126 (261)
T ss_dssp HHHHHHHHHHHCCSEEEESCCC---SHHHHHHHHH------------------------------------H-HHTTCEE
T ss_pred HHHHHHHHHhhCCCEEEeCCCC---CHHHHHHHHH------------------------------------H-HccCCEE
Confidence 3899999999999999999999 7765433222 1 1258899
Q ss_pred eeeeeehheecccceEEEeec
Q psy12535 134 MLITHQIQYLTHVDHVMLLEK 154 (209)
Q Consensus 134 IvitH~l~~l~~~DrV~~L~~ 154 (209)
++++|+.+....+|++++|..
T Consensus 127 l~t~H~~~~~~~~dri~~l~~ 147 (261)
T 2eyu_A 127 FGTLHTNTAIDTIHRIVDIFP 147 (261)
T ss_dssp EEEECCSSHHHHHHHHHHTSC
T ss_pred EEEeCcchHHHHHHHHhhhcC
Confidence 999999886556788877753
No 105
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=98.32 E-value=4e-08 Score=86.42 Aligned_cols=37 Identities=16% Similarity=0.051 Sum_probs=34.6
Q ss_pred cceecCCccchhhhhHHHHhhhcceeeccCcchhhhh
Q psy12535 44 KGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDA 80 (209)
Q Consensus 44 ~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~ 80 (209)
....|||||+||+++|||++.+|+|||||||++.+|+
T Consensus 173 ~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~ 209 (312)
T 3aez_A 173 CAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTG 209 (312)
T ss_dssp EEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred CcccCChhhhhhhhhHHHhccCCCEEEECCccccCCc
Confidence 3468999999999999999999999999999999986
No 106
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.31 E-value=6.2e-08 Score=83.43 Aligned_cols=35 Identities=11% Similarity=0.123 Sum_probs=31.7
Q ss_pred ceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhh
Q psy12535 45 GVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHV 82 (209)
Q Consensus 45 g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~ 82 (209)
..+|||||+||+++|||++. +++||||+++||+..
T Consensus 96 ~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD 130 (270)
T 3sop_A 96 KEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD 130 (270)
T ss_dssp HHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH
T ss_pred HHhcCcccchhhhhheeeee---eEEEecCCCcCCHHH
Confidence 45899999999999999875 999999999999864
No 107
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=98.28 E-value=7.6e-08 Score=94.59 Aligned_cols=84 Identities=10% Similarity=0.022 Sum_probs=59.3
Q ss_pred eecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhhhhh
Q psy12535 46 VSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRT 125 (209)
Q Consensus 46 ~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (209)
+.+|+++++ ++.+...+.+|+++|||||++|+|+.....+...++ ..
T Consensus 668 stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll--------------------------------~~ 714 (800)
T 1wb9_A 668 STFMVEMTE-TANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACA--------------------------------EN 714 (800)
T ss_dssp --CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHH--------------------------------HH
T ss_pred hhhhHHHHH-HHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHH--------------------------------HH
Confidence 356666654 444455688999999999999999876555433222 22
Q ss_pred hcc-ccceeeeeeeehheecccceEEEeeccceeecch
Q psy12535 126 SFL-KEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGT 162 (209)
Q Consensus 126 ~~~-~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~ 162 (209)
... .+.|+|++||+.+....+|++..+.+|++.....
T Consensus 715 l~~~~g~~vl~~TH~~el~~l~d~~~~v~n~~~~~~~~ 752 (800)
T 1wb9_A 715 LANKIKALTLFATHYFELTQLPEKMEGVANVHLDALEH 752 (800)
T ss_dssp HHHTTCCEEEEECSCGGGGGHHHHSTTEEEEEEEEEEE
T ss_pred HHhccCCeEEEEeCCHHHHHHhhhhhceEEEEEEEEEc
Confidence 223 3789999999998877789888888888865543
No 108
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=98.23 E-value=3.8e-07 Score=77.62 Aligned_cols=39 Identities=8% Similarity=0.044 Sum_probs=31.8
Q ss_pred cccceecCCccchhhhhHHHHhhhcceeeccCcch--hhhhhhh
Q psy12535 42 GDKGVSLSGGQRARISLARAVYKRADVYLLDDPLS--AVDAHVG 83 (209)
Q Consensus 42 g~~g~~LSgGqrQRlaiARal~~~p~illLDEPts--~LD~~~~ 83 (209)
+.....||+||.|++ ++++.+|+++|+||||+ ++|....
T Consensus 113 ~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~ 153 (279)
T 1nlf_A 113 GSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENAS 153 (279)
T ss_dssp TSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCH
T ss_pred CCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCch
Confidence 445678999997754 78889999999999999 8887543
No 109
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=98.13 E-value=2.8e-07 Score=82.56 Aligned_cols=59 Identities=15% Similarity=0.129 Sum_probs=46.4
Q ss_pred hhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhhhhhhccccceeeee
Q psy12535 57 SLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLI 136 (209)
Q Consensus 57 aiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvi 136 (209)
+|||||..+|++||+|||+ |..+...+.+ ....|+|+|++
T Consensus 188 ~La~aL~~~PdvillDEp~---d~e~~~~~~~-------------------------------------~~~~G~~vl~t 227 (356)
T 3jvv_A 188 ALRSALREDPDIILVGEMR---DLETIRLALT-------------------------------------AAETGHLVFGT 227 (356)
T ss_dssp HHHHHTTSCCSEEEESCCC---SHHHHHHHHH-------------------------------------HHHTTCEEEEE
T ss_pred HHHHHhhhCcCEEecCCCC---CHHHHHHHHH-------------------------------------HHhcCCEEEEE
Confidence 8999999999999999999 5544332222 12358999999
Q ss_pred eeehheecccceEEEeecc
Q psy12535 137 THQIQYLTHVDHVMLLEKG 155 (209)
Q Consensus 137 tH~l~~l~~~DrV~~L~~G 155 (209)
+|+.+.+..+||++.|..|
T Consensus 228 ~H~~~~~~~~dRli~l~~~ 246 (356)
T 3jvv_A 228 LHTTSAAKTIDRVVDVFPA 246 (356)
T ss_dssp ESCSSHHHHHHHHHHTSCH
T ss_pred EccChHHHHHHHHhhhcCc
Confidence 9999988778999988654
No 110
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=98.07 E-value=1.6e-06 Score=77.10 Aligned_cols=95 Identities=13% Similarity=0.017 Sum_probs=52.7
Q ss_pred CCccchhhhhHHHHh-------hhcceeeccCcchhhhhhhhh--hhhhhhhhccccCCCCccccchhhhhcccccccch
Q psy12535 49 SGGQRARISLARAVY-------KRADVYLLDDPLSAVDAHVGK--HLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGA 119 (209)
Q Consensus 49 SgGqrQRlaiARal~-------~~p~illLDEPts~LD~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (209)
|.+|+|++.++++++ .+|+++|+||||+++|+.... .+.+.. .....+
T Consensus 208 ~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~-----------------------~~~~~~ 264 (349)
T 1pzn_A 208 SNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQ-----------------------QKLAKH 264 (349)
T ss_dssp HHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHH-----------------------HHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHH-----------------------HHHHHH
Confidence 567899999999999 579999999999999985310 010000 000111
Q ss_pred hhhhhhhcc-ccceeeeeeeehheecc-cceEEEeeccceeecchhhHH
Q psy12535 120 LSLVRTSFL-KEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTTQL 166 (209)
Q Consensus 120 ~~~~~~~~~-~~~TiIvitH~l~~l~~-~DrV~~L~~G~i~~~G~~~~l 166 (209)
+..+..... .+.|||+++|....... ++.......|++.+.+....+
T Consensus 265 l~~L~~la~~~~~tvii~~h~~~~~~~~~~~~~~~~~G~~l~~~~~~rL 313 (349)
T 1pzn_A 265 LADLHRLANLYDIAVFVTNQVQARPDAFFGDPTRPIGGHILAHSATLRV 313 (349)
T ss_dssp HHHHHHHHHHTTCEEEEEEECC---------------CCCCCTTCSEEE
T ss_pred HHHHHHHHHHcCcEEEEEcccccccccccCCccccCCcceEeecCcEEE
Confidence 222333222 47899999998765442 344566778888877665444
No 111
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.92 E-value=1.9e-07 Score=75.58 Aligned_cols=46 Identities=17% Similarity=0.139 Sum_probs=38.6
Q ss_pred ccceecCCcc----chhhhhHHHHhhhcceeeccCcchh-------hhhhhhhhhhh
Q psy12535 43 DKGVSLSGGQ----RARISLARAVYKRADVYLLDDPLSA-------VDAHVGKHLFE 88 (209)
Q Consensus 43 ~~g~~LSgGq----rQRlaiARal~~~p~illLDEPts~-------LD~~~~~~~~~ 88 (209)
..+..+|+|+ +||+++|++++.+|+++++||||++ ||+.....+..
T Consensus 85 ~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r 141 (211)
T 3asz_A 85 MPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIR 141 (211)
T ss_dssp ECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHH
T ss_pred CCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHH
Confidence 3466899996 4799999999999999999999999 89876666544
No 112
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.83 E-value=7.8e-07 Score=70.86 Aligned_cols=80 Identities=11% Similarity=0.081 Sum_probs=54.4
Q ss_pred CCccchhhhhHH------HHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhh
Q psy12535 49 SGGQRARISLAR------AVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSL 122 (209)
Q Consensus 49 SgGqrQRlaiAR------al~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (209)
|+|++|++.++. +++.+|+...+|+ ++|+..... ++.
T Consensus 96 s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~--------------------------------- 138 (189)
T 2bdt_A 96 AKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL-VEE--------------------------------- 138 (189)
T ss_dssp HHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HHH---------------------------------
T ss_pred hcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHH---------------------------------
Confidence 899999999999 9999999988884 788865444 332
Q ss_pred hhhhccccceeeeeeee-hheecc-cceEEEeeccceeecchhhHHh
Q psy12535 123 VRTSFLKEKTVMLITHQ-IQYLTH-VDHVMLLEKGSVEAFGTTTQLL 167 (209)
Q Consensus 123 ~~~~~~~~~TiIvitH~-l~~l~~-~DrV~~L~~G~i~~~G~~~~l~ 167 (209)
+......+.++|.+||. ++.+.. ||+|+ ++|+++..|+++-+.
T Consensus 139 ~~~~~~~~~~ii~tsh~~~~~~e~~~~~i~--~~g~~~~~~~~~~~~ 183 (189)
T 2bdt_A 139 FESKGIDERYFYNTSHLQPTNLNDIVKNLK--TNPRFIFCMAGDPLE 183 (189)
T ss_dssp HHHTTCCTTSEEECSSSCGGGHHHHHHHHH--HCGGGSCC-------
T ss_pred HhhcCCCccEEEeCCCCChhhHHHHHHHHh--hCCcEEEeecCCchh
Confidence 11223346799999998 888875 79998 999999999987653
No 113
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.81 E-value=4.2e-07 Score=79.15 Aligned_cols=59 Identities=12% Similarity=0.186 Sum_probs=45.6
Q ss_pred eeeechhhhccCCCCCce------eecccceecCCccchhhhhH--HHHhhhcceeeccCcchhhhhhh
Q psy12535 22 KVCALKEDFAQLPSGDRT------LVGDKGVSLSGGQRARISLA--RAVYKRADVYLLDDPLSAVDAHV 82 (209)
Q Consensus 22 ~~~~l~~~i~~lp~g~~t------~vg~~g~~LSgGqrQRlaiA--Ral~~~p~illLDEPts~LD~~~ 82 (209)
....+.+++..++.|++| .+......+||||+||+++| +++ +|+|+|+|||++++|+..
T Consensus 103 d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 103 DMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp CHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCCCCC
T ss_pred HHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEc--CCCEEEEeCccccCCccc
Confidence 345567788888888654 35667789999999999997 555 899999999999999854
No 114
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=97.72 E-value=6.4e-06 Score=65.76 Aligned_cols=51 Identities=14% Similarity=0.107 Sum_probs=45.2
Q ss_pred ecccceecCCccchh-hhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhh
Q psy12535 41 VGDKGVSLSGGQRAR-ISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCI 91 (209)
Q Consensus 41 vg~~g~~LSgGqrQR-laiARal~~~p~illLDEPts~LD~~~~~~~~~~~~ 91 (209)
++.+...+|+||+|| +.++++++.+|.++++|||||++|......+++.+.
T Consensus 143 v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~ 194 (210)
T 1pui_A 143 LLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLD 194 (210)
T ss_dssp EEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHH
T ss_pred EEecccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHH
Confidence 477777899999999 899999999999999999999999998888877543
No 115
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=97.72 E-value=4e-06 Score=72.91 Aligned_cols=36 Identities=17% Similarity=0.092 Sum_probs=31.7
Q ss_pred ccceecCCccchhhhhHHHHhhhcceeeccCcchh-hhhhh
Q psy12535 43 DKGVSLSGGQRARISLARAVYKRADVYLLDDPLSA-VDAHV 82 (209)
Q Consensus 43 ~~g~~LSgGqrQRlaiARal~~~p~illLDEPts~-LD~~~ 82 (209)
....++|||||||+.+|||++ ++++||||++ ||+..
T Consensus 109 ~~~~~~sgg~rqrv~~ara~~----ll~ldePt~~~Ld~~~ 145 (301)
T 2qnr_A 109 RYLHDESGLNRRHIIDNRVHC----CFYFISPFGHGLKPLD 145 (301)
T ss_dssp HHHHHHTSSCCTTCCCCCCCE----EEEEECSSSSSCCHHH
T ss_pred HHHHHhCHHhhhhhhhhhhhh----eeeeecCcccCCCHHH
Confidence 556789999999999999986 9999999985 99964
No 116
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=97.45 E-value=1.3e-05 Score=66.93 Aligned_cols=35 Identities=20% Similarity=0.101 Sum_probs=30.2
Q ss_pred ceecCCccchhhhhHHHHhhhcceeeccCcchhhhh
Q psy12535 45 GVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDA 80 (209)
Q Consensus 45 g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~ 80 (209)
...||+||+||+++ ++++.+|+++|||||....+.
T Consensus 114 ~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~ 148 (245)
T 2jeo_A 114 VPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQ 148 (245)
T ss_dssp ECCEETTTTEECSS-CEEECCCSEEEEECTTTTTSH
T ss_pred cccccccccCccCc-eEEecCCCEEEEeCccccccH
Confidence 45799999999998 588899999999998776664
No 117
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.27 E-value=2.1e-06 Score=73.53 Aligned_cols=47 Identities=13% Similarity=0.172 Sum_probs=43.2
Q ss_pred CCCCCceeecccceecCCccchhhhhHHHHhhhcce--eeccCcchhhhhh
Q psy12535 33 LPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADV--YLLDDPLSAVDAH 81 (209)
Q Consensus 33 lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~i--llLDEPts~LD~~ 81 (209)
++.++++.+++++..+|+| ||++++++++.+|++ +|+||+|+++|..
T Consensus 158 l~~~l~~vi~qrl~~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~ 206 (261)
T 2eyu_A 158 LSFILQGIISQRLLPKIGG--GRVLAYGLLIPNTAIRNLIRENKLQQVYSL 206 (261)
T ss_dssp HHHHEEEEEEEEEECCSSS--SSEEEEEEECCCHHHHHHHHHTCHHHHHHH
T ss_pred HHHHhhEEEEEEeEecCCC--CEEEEEEEecCCHHHHHHHHcCCHHHHHHH
Confidence 3467889999999999999 899999999999999 9999999999985
No 118
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.22 E-value=0.00037 Score=56.59 Aligned_cols=23 Identities=17% Similarity=0.268 Sum_probs=17.1
Q ss_pred HHHHh--hhcceeeccCcchhhhhh
Q psy12535 59 ARAVY--KRADVYLLDDPLSAVDAH 81 (209)
Q Consensus 59 ARal~--~~p~illLDEPts~LD~~ 81 (209)
+..++ .+|+++++|||++.+|+.
T Consensus 111 ~~~~~~~~~~~lliiD~~~~~~~~~ 135 (243)
T 1n0w_A 111 ASAMMVESRYALLIVDSATALYRTD 135 (243)
T ss_dssp HHHHHHHSCEEEEEEETSSGGGC--
T ss_pred HHHHHhcCCceEEEEeCchHHHHHH
Confidence 44444 479999999999999874
No 119
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.17 E-value=8.7e-06 Score=72.98 Aligned_cols=47 Identities=13% Similarity=0.182 Sum_probs=42.9
Q ss_pred CCCCCceeecccceecCCccchhhhhHHHHhhhcce--eeccCcchhhhhh
Q psy12535 33 LPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADV--YLLDDPLSAVDAH 81 (209)
Q Consensus 33 lp~g~~t~vg~~g~~LSgGqrQRlaiARal~~~p~i--llLDEPts~LD~~ 81 (209)
++.++++.+++++..+|+| ||++||++++.+|++ +|+||+|++||..
T Consensus 269 l~~~l~~vv~qrl~~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~ 317 (372)
T 2ewv_A 269 LSFILQGIISQRLLPKIGG--GRVLAYELLIPNTAIRNLIRENKLQQVYSL 317 (372)
T ss_dssp HHHSCCEEEEEEEEECSSS--SEEEEEEECCCCSHHHHHHHHTCHHHHHHH
T ss_pred HHHhhhEEEEEEeEecCCC--CEEEEEEEeeCCHHHHHHHHcCCHHHHHHH
Confidence 3568889999999899999 899999999999999 9999999999964
No 120
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.13 E-value=1.7e-05 Score=70.18 Aligned_cols=87 Identities=13% Similarity=-0.015 Sum_probs=54.6
Q ss_pred eecCCccchhhhhHHHHh-hhcceeeccC---cc------hhhhhhhhhhhhhhhhhccccCCCCccccchhhhhccccc
Q psy12535 46 VSLSGGQRARISLARAVY-KRADVYLLDD---PL------SAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALG 115 (209)
Q Consensus 46 ~~LSgGqrQRlaiARal~-~~p~illLDE---Pt------s~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (209)
..+|+|++|+..+++++. .+|++++||| |+ +++|+..+..+...+
T Consensus 257 ~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l------------------------- 311 (365)
T 1lw7_A 257 FCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLL------------------------- 311 (365)
T ss_dssp HHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHH-------------------------
T ss_pred HHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHH-------------------------
Confidence 356777888888888875 5999999999 65 578887666665432
Q ss_pred ccchhhhhhhhc-cccceeeeeeeehheecccceEEEeeccceeecchhhHHh
Q psy12535 116 VRGALSLVRTSF-LKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLL 167 (209)
Q Consensus 116 ~~~~~~~~~~~~-~~~~TiIvitH~l~~l~~~DrV~~L~~G~i~~~G~~~~l~ 167 (209)
.... ..+.++|+++|.-..-+.++++.++++ +...++.++|.
T Consensus 312 --------~~l~~~~~~~ililde~~~~~r~~~~i~~i~~--~l~~~~~~~~~ 354 (365)
T 1lw7_A 312 --------KKLLDKYKVPYIEIESPSYLDRYNQVKAVIEK--VLNEEEISELQ 354 (365)
T ss_dssp --------HHHHHGGGCCCEEEECSSHHHHHHHHHHHHHH--HTSCCCCSSCC
T ss_pred --------HHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH--HhcccchhHhh
Confidence 1111 237899999985333344677777754 55566666654
No 121
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.01 E-value=0.00036 Score=54.82 Aligned_cols=29 Identities=17% Similarity=0.045 Sum_probs=21.8
Q ss_pred HHHhhhcceeeccCcch-hhhhhhhhhhhh
Q psy12535 60 RAVYKRADVYLLDDPLS-AVDAHVGKHLFE 88 (209)
Q Consensus 60 Ral~~~p~illLDEPts-~LD~~~~~~~~~ 88 (209)
...+.+|++||||||++ ++|+.....+++
T Consensus 95 ~~~~~~~~llilDE~~~~~~~~~~~~~l~~ 124 (180)
T 3ec2_A 95 LKTVLNSPVLVLDDLGSERLSDWQRELISY 124 (180)
T ss_dssp HHHHHTCSEEEEETCSSSCCCHHHHHHHHH
T ss_pred HHHhcCCCEEEEeCCCCCcCCHHHHHHHHH
Confidence 34467899999999985 889876655544
No 122
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=96.99 E-value=0.00011 Score=69.75 Aligned_cols=87 Identities=15% Similarity=0.195 Sum_probs=59.2
Q ss_pred CccchhhhhHHHHhhhcceeeccCc------chhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhhh
Q psy12535 50 GGQRARISLARAVYKRADVYLLDDP------LSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLV 123 (209)
Q Consensus 50 gGqrQRlaiARal~~~p~illLDEP------ts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (209)
+..++++.++.+....|+++|+||| |++||+.....+.+.+...+
T Consensus 131 ~~s~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l----------------------------- 181 (608)
T 3szr_A 131 GISHELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYI----------------------------- 181 (608)
T ss_dssp CCCSCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHT-----------------------------
T ss_pred ccchHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHH-----------------------------
Confidence 3446777777777789999999999 99999987777765322110
Q ss_pred hhhccccceeeeeeeehhee--------cc-----cceEEEeeccceeecchhhHHh
Q psy12535 124 RTSFLKEKTVMLITHQIQYL--------TH-----VDHVMLLEKGSVEAFGTTTQLL 167 (209)
Q Consensus 124 ~~~~~~~~TiIvitH~l~~l--------~~-----~DrV~~L~~G~i~~~G~~~~l~ 167 (209)
. ...+.+++++||+++.. .. ...|+|+.++.++..|+.+++.
T Consensus 182 ~--~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK~Dlv~~g~~~~~~ 236 (608)
T 3szr_A 182 Q--RQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPDLVDKGTEDKVV 236 (608)
T ss_dssp T--SSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEECGGGSSSSSTTCCC
T ss_pred h--cCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecchhhcCcccHHHHH
Confidence 0 12356788899987632 11 2457888899888888765543
No 123
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.91 E-value=0.00026 Score=61.80 Aligned_cols=35 Identities=20% Similarity=0.242 Sum_probs=23.9
Q ss_pred CCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhh
Q psy12535 49 SGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFE 88 (209)
Q Consensus 49 SgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~ 88 (209)
+..++||++||||++.+|+.++| .||+.+...+.+
T Consensus 204 ~eLs~~r~~iaRal~~~P~~~lL-----vLDa~t~~~~~~ 238 (304)
T 1rj9_A 204 EELKKVKRAIAKADPEEPKEVWL-----VLDAVTGQNGLE 238 (304)
T ss_dssp HHHHHHHHHHHHHCTTCCSEEEE-----EEETTBCTHHHH
T ss_pred HHHHHHHHHHHHhhcCCCCeEEE-----EEcHHHHHHHHH
Confidence 33448999999999999995444 455544444433
No 124
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.88 E-value=0.00011 Score=67.23 Aligned_cols=36 Identities=8% Similarity=0.019 Sum_probs=28.8
Q ss_pred ecCCccchhhhhHHHHhhhcc---eeeccCcc-hhhhhhh
Q psy12535 47 SLSGGQRARISLARAVYKRAD---VYLLDDPL-SAVDAHV 82 (209)
Q Consensus 47 ~LSgGqrQRlaiARal~~~p~---illLDEPt-s~LD~~~ 82 (209)
.++.+++||++|||+++.+|+ +|++|||| ++||+..
T Consensus 118 ~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d 157 (418)
T 2qag_C 118 KFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLD 157 (418)
T ss_dssp HHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHH
T ss_pred HHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHH
Confidence 456788999999999999999 99999999 6899854
No 125
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.88 E-value=0.00015 Score=64.89 Aligned_cols=58 Identities=12% Similarity=0.112 Sum_probs=39.9
Q ss_pred hhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhhhhhhccccceee
Q psy12535 55 RISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVM 134 (209)
Q Consensus 55 RlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiI 134 (209)
+.+|+++|..+|+++++|||+ |+.+...+++ . ...|.+++
T Consensus 199 ~~~l~~~L~~~pd~illdE~~---d~e~~~~~l~------------------------------------~-~~~g~~vi 238 (372)
T 2ewv_A 199 ADALRAALREDPDVIFVGEMR---DLETVETALR------------------------------------A-AETGHLVF 238 (372)
T ss_dssp HHHHHHHTTSCCSEEEESCCC---SHHHHHHHHH------------------------------------H-HTTTCEEE
T ss_pred HHHHHHHhhhCcCEEEECCCC---CHHHHHHHHH------------------------------------H-HhcCCEEE
Confidence 579999999999999999999 5543222211 1 12478999
Q ss_pred eeeeehheecccceEEEe
Q psy12535 135 LITHQIQYLTHVDHVMLL 152 (209)
Q Consensus 135 vitH~l~~l~~~DrV~~L 152 (209)
.++|..+....+||++.|
T Consensus 239 ~t~H~~~~~~~~~rl~~l 256 (372)
T 2ewv_A 239 GTLHTNTAIDTIHRIVDI 256 (372)
T ss_dssp ECCCCCSHHHHHHHHHHT
T ss_pred EEECcchHHHHHHHHHHh
Confidence 999986644445665443
No 126
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.53 E-value=0.0011 Score=57.02 Aligned_cols=47 Identities=9% Similarity=0.233 Sum_probs=33.4
Q ss_pred HhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeeehh
Q psy12535 62 VYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQ 141 (209)
Q Consensus 62 l~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~l~ 141 (209)
+..+|+|+|+|||++ ||......+++. +.. ..++.++|++||+++
T Consensus 131 l~~~~~vlilDE~~~-L~~~~~~~L~~~---------------------------------le~-~~~~~~~Il~t~~~~ 175 (354)
T 1sxj_E 131 LAHRYKCVIINEANS-LTKDAQAALRRT---------------------------------MEK-YSKNIRLIMVCDSMS 175 (354)
T ss_dssp ---CCEEEEEECTTS-SCHHHHHHHHHH---------------------------------HHH-STTTEEEEEEESCSC
T ss_pred cCCCCeEEEEeCccc-cCHHHHHHHHHH---------------------------------HHh-hcCCCEEEEEeCCHH
Confidence 466899999999999 999776666542 222 234679999999887
Q ss_pred ee
Q psy12535 142 YL 143 (209)
Q Consensus 142 ~l 143 (209)
.+
T Consensus 176 ~l 177 (354)
T 1sxj_E 176 PI 177 (354)
T ss_dssp SS
T ss_pred HH
Confidence 54
No 127
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.47 E-value=0.001 Score=51.79 Aligned_cols=27 Identities=15% Similarity=0.106 Sum_probs=19.2
Q ss_pred HHhhhcceeeccCcchhhhhhhhhhhhh
Q psy12535 61 AVYKRADVYLLDDPLSAVDAHVGKHLFE 88 (209)
Q Consensus 61 al~~~p~illLDEPts~LD~~~~~~~~~ 88 (209)
+++.+|++||||||++ ++...+..+++
T Consensus 79 ~~~~~~~lLilDE~~~-~~~~~~~~l~~ 105 (149)
T 2kjq_A 79 DAAFEAEYLAVDQVEK-LGNEEQALLFS 105 (149)
T ss_dssp GGGGGCSEEEEESTTC-CCSHHHHHHHH
T ss_pred HHHhCCCEEEEeCccc-cChHHHHHHHH
Confidence 4567899999999998 55544444444
No 128
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.08 E-value=0.00054 Score=56.76 Aligned_cols=40 Identities=18% Similarity=0.203 Sum_probs=32.8
Q ss_pred cccceecCCccchhhhhHHHH-hhhcceeecc----Ccchhhhhhhhhhhhh
Q psy12535 42 GDKGVSLSGGQRARISLARAV-YKRADVYLLD----DPLSAVDAHVGKHLFE 88 (209)
Q Consensus 42 g~~g~~LSgGqrQRlaiARal-~~~p~illLD----EPts~LD~~~~~~~~~ 88 (209)
.+....||| |+ +|+ +.+|++++|| |||+++|..+...+.+
T Consensus 147 ~r~~~~lSg----rv---~al~~~~P~~lllD~~~~EP~~~ld~~~~~~i~~ 191 (246)
T 2bbw_A 147 RRWIHPPSG----RV---YNLDFNPPHVHGIDDVTGEPLVQQEDDKPEAVAA 191 (246)
T ss_dssp TEEEETTTT----EE---EETTTSCCSSTTBCTTTCCBCBCCGGGSHHHHHH
T ss_pred cCCCcCCCC----Cc---cccccCCCcccccccccccccccCCCCcHHHHHH
Confidence 455667898 65 677 8999999999 9999999987766655
No 129
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.02 E-value=0.0037 Score=55.02 Aligned_cols=46 Identities=17% Similarity=0.252 Sum_probs=28.3
Q ss_pred ccceecCCccchhhhhHHHH---hh--hcceeeccCcchhhhhhhhhhhhh
Q psy12535 43 DKGVSLSGGQRARISLARAV---YK--RADVYLLDDPLSAVDAHVGKHLFE 88 (209)
Q Consensus 43 ~~g~~LSgGqrQRlaiARal---~~--~p~illLDEPts~LD~~~~~~~~~ 88 (209)
+.+..+|+||+||++|+|+| +. ++.++++|||+..-+......+++
T Consensus 292 ~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~~~~~r~~~~i~~i~ 342 (365)
T 1lw7_A 292 DDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESPSYLDRYNQVKAVIE 342 (365)
T ss_dssp ---------CCSHHHHHHHHHHHHHGGGCCCEEEECSSHHHHHHHHHHHHH
T ss_pred cCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Confidence 44567999999999999999 77 899999999985554433333333
No 130
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.81 E-value=0.0075 Score=54.61 Aligned_cols=28 Identities=11% Similarity=0.189 Sum_probs=18.6
Q ss_pred hhhhhHHHHh--hhcceeeccCcchhhhhh
Q psy12535 54 ARISLARAVY--KRADVYLLDDPLSAVDAH 81 (209)
Q Consensus 54 QRlaiARal~--~~p~illLDEPts~LD~~ 81 (209)
+.+..++.++ .+|+++++|||++.+|..
T Consensus 260 ~~l~~~~~~l~~~~~~llVIDs~t~~~~~~ 289 (400)
T 3lda_A 260 RLLDAAAQMMSESRFSLIVVDSVMALYRTD 289 (400)
T ss_dssp HHHHHHHHHHHHSCEEEEEEETGGGGCC--
T ss_pred HHHHHHHHHHHhcCCceEEecchhhhCchh
Confidence 3333344443 459999999999999864
No 131
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=95.81 E-value=0.00058 Score=59.44 Aligned_cols=26 Identities=15% Similarity=0.133 Sum_probs=24.2
Q ss_pred ecCCccchhhhhHHHHhhhcceeeccCc
Q psy12535 47 SLSGGQRARISLARAVYKRADVYLLDDP 74 (209)
Q Consensus 47 ~LSgGqrQRlaiARal~~~p~illLDEP 74 (209)
+||+||+||+..+++++++|+++ |||
T Consensus 141 ~ls~g~~Q~~~ad~ill~k~dl~--de~ 166 (318)
T 1nij_A 141 QFTIAQSQVGYADRILLTKTDVA--GEA 166 (318)
T ss_dssp HCHHHHHHHHTCSEEEEECTTTC--SCT
T ss_pred hchHHHHHHHhCCEEEEECcccC--CHH
Confidence 68999999999999999999987 999
No 132
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.24 E-value=0.00023 Score=57.61 Aligned_cols=48 Identities=15% Similarity=0.074 Sum_probs=38.7
Q ss_pred hhhccCCCC--CceeecccceecCCccchhhhhH-HHHhhhcceeeccCcc
Q psy12535 28 EDFAQLPSG--DRTLVGDKGVSLSGGQRARISLA-RAVYKRADVYLLDDPL 75 (209)
Q Consensus 28 ~~i~~lp~g--~~t~vg~~g~~LSgGqrQRlaiA-Ral~~~p~illLDEPt 75 (209)
+.+..++.| ..+.+.+.+..+|+||+|++++| ++++.++.++++|||.
T Consensus 90 ~~l~~l~~~~~i~~p~~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~ 140 (208)
T 3c8u_A 90 RLCHALKHQERVIYPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPG 140 (208)
T ss_dssp HHHHHHHHCSCEEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSTT
T ss_pred HHHHHHhcCCceecccCCccccCCCCCceEEcCCCcEEEECCceeccCCch
Confidence 344444433 56677888889999999999998 9999999999999984
No 133
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.22 E-value=0.031 Score=45.03 Aligned_cols=67 Identities=15% Similarity=0.134 Sum_probs=40.0
Q ss_pred hhhHHHHh--hhcceeeccCcchhhh--hhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhhhhhhccccc
Q psy12535 56 ISLARAVY--KRADVYLLDDPLSAVD--AHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEK 131 (209)
Q Consensus 56 laiARal~--~~p~illLDEPts~LD--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (209)
+..++.++ .+|+++++|+|++.+. +......+.. +.+.....+.
T Consensus 117 ~~~i~~~~~~~~~~~vviD~~~~l~~~~~~~~~~~l~~--------------------------------l~~~~~~~~~ 164 (247)
T 2dr3_A 117 IEVLRQAIRDINAKRVVVDSVTTLYINKPAMARSIILQ--------------------------------LKRVLAGTGC 164 (247)
T ss_dssp HHHHHHHHHHHTCCEEEEETSGGGTTTCGGGHHHHHHH--------------------------------HHHHHHHTTC
T ss_pred HHHHHHHHHHhCCCEEEECCchHhhcCCHHHHHHHHHH--------------------------------HHHHHHHCCC
Confidence 44444444 5799999999999873 3211222121 1111123478
Q ss_pred eeeeeeeehhe--------ec-ccceEEEeec
Q psy12535 132 TVMLITHQIQY--------LT-HVDHVMLLEK 154 (209)
Q Consensus 132 TiIvitH~l~~--------l~-~~DrV~~L~~ 154 (209)
|||+++|.... +. .+|.|++|+.
T Consensus 165 ~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 165 TSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp EEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred eEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 99999996654 23 3699999975
No 134
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=95.18 E-value=0.0047 Score=57.85 Aligned_cols=34 Identities=12% Similarity=-0.069 Sum_probs=26.8
Q ss_pred ecCCccchhh----------hhHHHHhhhcc-eeeccCcchhhhh
Q psy12535 47 SLSGGQRARI----------SLARAVYKRAD-VYLLDDPLSAVDA 80 (209)
Q Consensus 47 ~LSgGqrQRl----------aiARal~~~p~-illLDEPts~LD~ 80 (209)
.+|+||+|+. .+|+++...|. ++++||+++.++.
T Consensus 268 ~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvIDE~~~ll~~ 312 (512)
T 2ius_A 268 ADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMT 312 (512)
T ss_dssp HHHTTCCCBCTTC---------CCBCCCCCEEEEEEETHHHHHHH
T ss_pred HhhcCCcccccccccccchhccccccccCCcEEEEEeCHHHHHhh
Confidence 5799999874 35667778898 7889999999984
No 135
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.10 E-value=0.02 Score=50.62 Aligned_cols=26 Identities=15% Similarity=0.335 Sum_probs=21.6
Q ss_pred chhhhhHHHHhhh--cceeeccCcchhh
Q psy12535 53 RARISLARAVYKR--ADVYLLDDPLSAV 78 (209)
Q Consensus 53 rQRlaiARal~~~--p~illLDEPts~L 78 (209)
.|-+.++++++.+ |+++|+|++++.+
T Consensus 125 e~~l~~~~~l~~~~~~~lIVIDsl~~l~ 152 (349)
T 2zr9_A 125 EQALEIADMLVRSGALDIIVIDSVAALV 152 (349)
T ss_dssp HHHHHHHHHHHTTTCCSEEEEECGGGCC
T ss_pred HHHHHHHHHHHhcCCCCEEEEcChHhhc
Confidence 3556788888765 9999999999987
No 136
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=94.91 E-value=0.0094 Score=49.29 Aligned_cols=60 Identities=10% Similarity=0.168 Sum_probs=44.0
Q ss_pred HHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhhhhhhccccceeeeeee
Q psy12535 59 ARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITH 138 (209)
Q Consensus 59 ARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH 138 (209)
++.++..++++||| ||+.....+.+.+ .++.||+++||
T Consensus 101 v~~~l~~G~illLD-----LD~~~~~~i~~~l-------------------------------------~~~~tI~i~th 138 (219)
T 1s96_A 101 IEQVLATGVDVFLD-----IDWQGAQQIRQKM-------------------------------------PHARSIFILPP 138 (219)
T ss_dssp HHHHHTTTCEEEEE-----CCHHHHHHHHHHC-------------------------------------TTCEEEEEECS
T ss_pred HHHHHhcCCeEEEE-----ECHHHHHHHHHHc-------------------------------------cCCEEEEEECC
Confidence 45667789999999 9998887776521 14789999999
Q ss_pred ehheecccceEEEeeccceeecchhhHHhh
Q psy12535 139 QIQYLTHVDHVMLLEKGSVEAFGTTTQLLA 168 (209)
Q Consensus 139 ~l~~l~~~DrV~~L~~G~i~~~G~~~~l~~ 168 (209)
+++.+.. |+ +.+| .++++++..
T Consensus 139 ~~~~l~~--Rl--~~rG----~~~~e~i~~ 160 (219)
T 1s96_A 139 SKIELDR--RL--RGRG----QDSEEVIAK 160 (219)
T ss_dssp SHHHHHH--HH--HTTS----CSCHHHHHH
T ss_pred CHHHHHH--HH--HHcC----CCCHHHHHH
Confidence 9998765 32 5666 566777653
No 137
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=94.65 E-value=0.0069 Score=55.15 Aligned_cols=36 Identities=17% Similarity=0.093 Sum_probs=31.9
Q ss_pred cceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhh
Q psy12535 44 KGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVG 83 (209)
Q Consensus 44 ~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~ 83 (209)
...+||+|++|++++|++|+..|.|+++ +.+|....
T Consensus 249 ~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~~ 284 (416)
T 1udx_A 249 PLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLEE 284 (416)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCH
T ss_pred CHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhhH
Confidence 3457999999999999999999999999 88888654
No 138
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.59 E-value=0.011 Score=46.11 Aligned_cols=27 Identities=11% Similarity=0.004 Sum_probs=24.0
Q ss_pred ccceecCCccchhhhhHHHHhhhccee
Q psy12535 43 DKGVSLSGGQRARISLARAVYKRADVY 69 (209)
Q Consensus 43 ~~g~~LSgGqrQRlaiARal~~~p~il 69 (209)
..+..+|+|++|++++||++.++|+++
T Consensus 105 ~~~~~ls~~~~~~v~~~R~~~r~~~~l 131 (191)
T 1zp6_A 105 RPLHYIVLRTTAAEAIERCLDRGGDSL 131 (191)
T ss_dssp SCEEEEEEECCHHHHHHHHHTTCTTSC
T ss_pred CCeEEEEecCCHHHHHHHHHhcCCCcc
Confidence 345689999999999999999999986
No 139
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=94.48 E-value=0.00099 Score=60.37 Aligned_cols=64 Identities=17% Similarity=0.104 Sum_probs=47.5
Q ss_pred hc--ceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhhhhhh-ccccceeeeeeeehh
Q psy12535 65 RA--DVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTS-FLKEKTVMLITHQIQ 141 (209)
Q Consensus 65 ~p--~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~TiIvitH~l~ 141 (209)
+| +++++|||++.+|+......++ .+.+. ...++|++ +|.+.
T Consensus 139 dP~~di~ildeel~~~D~~~~~k~~~---------------------------------~l~~~~~~~g~ti~--sh~~~ 183 (392)
T 1ni3_A 139 DPIRDLSIIVDELLIKDAEFVEKHLE---------------------------------GLRKITSRGANTLE--MKAKK 183 (392)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------------HHHHTTCCSSCSSS--HHHHH
T ss_pred CcchhhhhchhhhHHHHHHHHHHHHH---------------------------------HHHHHHHhcCCccc--cccHH
Confidence 78 9999999999999976655544 22233 33466653 99988
Q ss_pred eecc-cceEE-Eeecc-ceeecchh
Q psy12535 142 YLTH-VDHVM-LLEKG-SVEAFGTT 163 (209)
Q Consensus 142 ~l~~-~DrV~-~L~~G-~i~~~G~~ 163 (209)
.+.. ++++. +|++| +++..|+.
T Consensus 184 ~~~~l~~~i~~~L~~G~~~~~~~~~ 208 (392)
T 1ni3_A 184 EEQAIIEKVYQYLTETKQPIRKGDW 208 (392)
T ss_dssp HHHHHHHHHHHHHHTTCSCGGGSCC
T ss_pred HHHHHHHHHHHHhccCCceeecCCC
Confidence 7654 79999 99999 88877654
No 140
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.16 E-value=0.0014 Score=52.93 Aligned_cols=32 Identities=9% Similarity=0.107 Sum_probs=26.9
Q ss_pred hHH-HHhhhcceeeccCcchhhhhhhhhhhhhh
Q psy12535 58 LAR-AVYKRADVYLLDDPLSAVDAHVGKHLFED 89 (209)
Q Consensus 58 iAR-al~~~p~illLDEPts~LD~~~~~~~~~~ 89 (209)
.|| +++.+|.+++|||+|+++|..+...+.+.
T Consensus 116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~ 148 (198)
T 1lvg_A 116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKR 148 (198)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHH
T ss_pred CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHH
Confidence 566 78899999999999999999887777553
No 141
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=93.81 E-value=0.018 Score=56.20 Aligned_cols=40 Identities=13% Similarity=0.130 Sum_probs=34.7
Q ss_pred cceecCCccchhhhhHHHHhhhcceeeccCcch-hhhhhhh
Q psy12535 44 KGVSLSGGQRARISLARAVYKRADVYLLDDPLS-AVDAHVG 83 (209)
Q Consensus 44 ~g~~LSgGqrQRlaiARal~~~p~illLDEPts-~LD~~~~ 83 (209)
...-+|.|+.+|..++++++.+++++|+|||.. +||....
T Consensus 187 ~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~ 227 (773)
T 2xau_A 187 ILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDIL 227 (773)
T ss_dssp SEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHH
T ss_pred CEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHH
Confidence 345689999999999999999999999999997 8987543
No 142
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=93.53 E-value=0.037 Score=50.20 Aligned_cols=32 Identities=9% Similarity=0.017 Sum_probs=24.8
Q ss_pred ecCCccchhhhhHHHHh--hhcceeeccCcchhhhh
Q psy12535 47 SLSGGQRARISLARAVY--KRADVYLLDDPLSAVDA 80 (209)
Q Consensus 47 ~LSgGqrQRlaiARal~--~~p~illLDEPts~LD~ 80 (209)
.+|.++.+ +.+|.+. .+|+++|+|+++.-.+.
T Consensus 295 ~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~ 328 (454)
T 2r6a_A 295 SIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGS 328 (454)
T ss_dssp TCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCS
T ss_pred CCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccC
Confidence 57777654 6777776 67999999999987654
No 143
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=93.07 E-value=0.091 Score=48.79 Aligned_cols=49 Identities=22% Similarity=0.321 Sum_probs=35.8
Q ss_pred eeecccceecCCccchhhhhHH--HHhhh---------------cceeeccCcchhhhhhhhhhhhh
Q psy12535 39 TLVGDKGVSLSGGQRARISLAR--AVYKR---------------ADVYLLDDPLSAVDAHVGKHLFE 88 (209)
Q Consensus 39 t~vg~~g~~LSgGqrQRlaiAR--al~~~---------------p~illLDEPts~LD~~~~~~~~~ 88 (209)
+.+......+||||+|-.-+|. +++.. -.+++|||+ +-+|......+++
T Consensus 371 ~~~s~~~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~ 436 (483)
T 3euj_A 371 GWMRAESSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFE 436 (483)
T ss_dssp EEEECCGGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHH
T ss_pred ceeecccCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHH
Confidence 6777778899999999544433 33221 147999999 9999987777766
No 144
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=91.40 E-value=0.15 Score=47.06 Aligned_cols=27 Identities=22% Similarity=0.257 Sum_probs=23.5
Q ss_pred CccchhhhhHHHHhhhcceeeccCcch
Q psy12535 50 GGQRARISLARAVYKRADVYLLDDPLS 76 (209)
Q Consensus 50 gGqrQRlaiARal~~~p~illLDEPts 76 (209)
+++++|-.+++|....|.||++||+.+
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~ 119 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDA 119 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGG
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhh
Confidence 467888899999999999999999954
No 145
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=91.20 E-value=0.093 Score=41.11 Aligned_cols=43 Identities=19% Similarity=0.226 Sum_probs=34.9
Q ss_pred ecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhh
Q psy12535 47 SLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCI 91 (209)
Q Consensus 47 ~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~ 91 (209)
+|..-..+.+.+|++++.+|+++++| ||++|......+++.+.
T Consensus 145 Dl~~~~~~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~ 187 (191)
T 1oix_A 145 DLRHLRAVPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTIL 187 (191)
T ss_dssp GGGGGCCSCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHH
T ss_pred ccccccccCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHH
Confidence 34443456688999999999999999 99999998888887543
No 146
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=91.00 E-value=0.085 Score=45.84 Aligned_cols=30 Identities=23% Similarity=0.372 Sum_probs=27.4
Q ss_pred ecCCccchhh---hhHHHHhhhcceeeccCcch
Q psy12535 47 SLSGGQRARI---SLARAVYKRADVYLLDDPLS 76 (209)
Q Consensus 47 ~LSgGqrQRl---aiARal~~~p~illLDEPts 76 (209)
.+|+|+.|++ +|++++..+|+++|+|+|..
T Consensus 165 ~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 165 HSEGADPAAVAFDAVAHALARNKDVVIIDTAGR 197 (306)
T ss_dssp CSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC
T ss_pred cCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 5689999999 99999999999999999974
No 147
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=90.97 E-value=0.012 Score=54.40 Aligned_cols=70 Identities=11% Similarity=-0.033 Sum_probs=49.0
Q ss_pred HHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhhhhhhccccceeeeeeee
Q psy12535 60 RAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQ 139 (209)
Q Consensus 60 Ral~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiIvitH~ 139 (209)
|||..+ ||||+ ||+|++||. ...+...+ . ..-++++.+++|.
T Consensus 28 ralt~d-dvlLm-p~~s~~~p~-~v~l~~eL--------------------------------t---~~~~~~iP~vsa~ 69 (514)
T 1jcn_A 28 DDLTYN-DFLIL-PGFIDFIAD-EVDLTSAL--------------------------------T---RKITLKTPLISSP 69 (514)
T ss_dssp SCCCGG-GEEEC-CCCCCSCGG-GCBCCEES--------------------------------S---SSCEESSCEEECC
T ss_pred cccccC-cEEec-cCccCCCcc-eeEEEeec--------------------------------c---CCeeEeceEEEEe
Confidence 789999 99999 999999993 33331111 0 0125689999999
Q ss_pred hhee--c-ccceEEEeeccceeec-chhhHHh
Q psy12535 140 IQYL--T-HVDHVMLLEKGSVEAF-GTTTQLL 167 (209)
Q Consensus 140 l~~l--~-~~DrV~~L~~G~i~~~-G~~~~l~ 167 (209)
+..+ . .++++..+..+.++.. ++++++.
T Consensus 70 md~~t~~~la~~ia~~gg~gii~~~~t~e~~~ 101 (514)
T 1jcn_A 70 MDTVTEADMAIAMALMGGIGFIHHNCTPEFQA 101 (514)
T ss_dssp CTTTCSHHHHHHHHHTTCEEEECCSSCHHHHH
T ss_pred hhhhhhhhHHHHHHhcCCeeEEecCCCHHHHH
Confidence 9876 2 3688888877777654 4676653
No 148
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=90.28 E-value=0.0083 Score=55.92 Aligned_cols=57 Identities=12% Similarity=0.144 Sum_probs=38.6
Q ss_pred cceecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhhh
Q psy12535 44 KGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLV 123 (209)
Q Consensus 44 ~g~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (209)
....+|+||+||+++|.+ | ++|||+.....+++.+
T Consensus 397 ~~~~~s~G~~~R~~~ai~-----------E-~~GlDp~~~~~~~~~l--------------------------------- 431 (511)
T 2oap_1 397 QTMWVRGNTRLRRTKEVN-----------E-ILGIDPVDKNLLVNQF--------------------------------- 431 (511)
T ss_dssp EEEEESSSCEEEEEEEEE-----------E-EEECCSSSSCCEEEEE---------------------------------
T ss_pred EEEEEeCCCceEEEEEEE-----------E-EcCcccCCCeEEEEEe---------------------------------
Confidence 345689999999988621 6 9999987655544321
Q ss_pred hhhccccceeee--eeeehheecc
Q psy12535 124 RTSFLKEKTVML--ITHQIQYLTH 145 (209)
Q Consensus 124 ~~~~~~~~TiIv--itH~l~~l~~ 145 (209)
......++|+++ +||.++.+..
T Consensus 432 ~~~~~~~~tii~~~~sH~l~ei~~ 455 (511)
T 2oap_1 432 VKWDPKEDKHIEVSMPKKLEKMAD 455 (511)
T ss_dssp EEEETTTTEEEECSCCTHHHHHHH
T ss_pred EEEcccCCEEEEcccHHHHHHHHH
Confidence 122234778874 8999998764
No 149
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=88.89 E-value=0.081 Score=45.60 Aligned_cols=28 Identities=7% Similarity=0.077 Sum_probs=20.3
Q ss_pred hhhhHHHHhhhcceeeccCcchhhhhhhhhhh
Q psy12535 55 RISLARAVYKRADVYLLDDPLSAVDAHVGKHL 86 (209)
Q Consensus 55 RlaiARal~~~p~illLDEPts~LD~~~~~~~ 86 (209)
+.+|++ +.+|+++|+| |+|+|+.....+
T Consensus 174 ~~al~~--~~~~dlvIiD--T~G~~~~~~~~~ 201 (296)
T 2px0_A 174 QQAKEL--FSEYDHVFVD--TAGRNFKDPQYI 201 (296)
T ss_dssp HHHHHH--GGGSSEEEEE--CCCCCTTSHHHH
T ss_pred HHHHHH--hcCCCEEEEe--CCCCChhhHHHH
Confidence 445554 4899999999 889998644333
No 150
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=88.60 E-value=0.015 Score=49.46 Aligned_cols=33 Identities=15% Similarity=0.180 Sum_probs=28.1
Q ss_pred cccceecCCccchhhhhHHHHhhhcceeeccCcch
Q psy12535 42 GDKGVSLSGGQRARISLARAVYKRADVYLLDDPLS 76 (209)
Q Consensus 42 g~~g~~LSgGqrQRlaiARal~~~p~illLDEPts 76 (209)
......|||||+||+.|++|+.++|++| |+|+.
T Consensus 132 ~~~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~ 164 (274)
T 2x8a_A 132 NQLLTEMDGLEARQQVFIMAATNRPDII--DPAIL 164 (274)
T ss_dssp HHHHHHHHTCCSTTCEEEEEEESCGGGS--CHHHH
T ss_pred HHHHHhhhcccccCCEEEEeecCChhhC--CHhhc
Confidence 3445679999999999999999999975 88875
No 151
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=88.25 E-value=0.23 Score=42.63 Aligned_cols=34 Identities=21% Similarity=0.188 Sum_probs=28.2
Q ss_pred chhhhhHHHHhhhcceeeccCc-chhhhhhhhhhh
Q psy12535 53 RARISLARAVYKRADVYLLDDP-LSAVDAHVGKHL 86 (209)
Q Consensus 53 rQRlaiARal~~~p~illLDEP-ts~LD~~~~~~~ 86 (209)
.+|.+|+++...+++++|+|+| ++++|......+
T Consensus 168 l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l 202 (295)
T 1ls1_A 168 IRRRVEEKARLEARDLILVDTAGRLQIDEPLMGEL 202 (295)
T ss_dssp HHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHH
T ss_pred HHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHH
Confidence 3578899988899999999999 999987655544
No 152
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=87.14 E-value=0.14 Score=45.26 Aligned_cols=70 Identities=9% Similarity=0.015 Sum_probs=47.5
Q ss_pred CCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhhhhhhcc
Q psy12535 49 SGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFL 128 (209)
Q Consensus 49 SgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (209)
+++..++-.|+.++..+|+.+++||+..+ ... .+++ ....
T Consensus 236 ~~~~t~~~~i~~~l~~~pd~~l~~e~r~~---~~~-~~l~------------------------------------~l~~ 275 (361)
T 2gza_A 236 NAPVTAATLLRSCLRMKPTRILLAELRGG---EAY-DFIN------------------------------------VAAS 275 (361)
T ss_dssp ---CCHHHHHHHHTTSCCSEEEESCCCST---HHH-HHHH------------------------------------HHHT
T ss_pred ccccCHHHHHHHHHhcCCCEEEEcCchHH---HHH-HHHH------------------------------------HHhc
Confidence 57788999999999999999999999862 111 1111 1111
Q ss_pred ccceeeeeeeehheecccceEEEeecccee
Q psy12535 129 KEKTVMLITHQIQYLTHVDHVMLLEKGSVE 158 (209)
Q Consensus 129 ~~~TiIvitH~l~~l~~~DrV~~L~~G~i~ 158 (209)
...|++.++|..+....++|++.|..|...
T Consensus 276 g~~~~l~t~H~~~~~~~~~Rl~~l~~~~~~ 305 (361)
T 2gza_A 276 GHGGSITSCHAGSCELTFERLALMVLQNRQ 305 (361)
T ss_dssp TCCSCEEEEECSSHHHHHHHHHHHHTTSTT
T ss_pred CCCeEEEEECCCCHHHHHHHHHHHHhcccc
Confidence 234788999987755567999999877543
No 153
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=84.75 E-value=0.31 Score=43.98 Aligned_cols=16 Identities=25% Similarity=0.463 Sum_probs=13.6
Q ss_pred hcceeeccCcchhhhh
Q psy12535 65 RADVYLLDDPLSAVDA 80 (209)
Q Consensus 65 ~p~illLDEPts~LD~ 80 (209)
+|+||++||+..-.+.
T Consensus 194 ~~~vL~IDEi~~l~~~ 209 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGK 209 (440)
T ss_dssp TCSEEEEECGGGGSSC
T ss_pred CCCEEEEeCcccccCC
Confidence 8999999999887653
No 154
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=82.81 E-value=0.71 Score=40.70 Aligned_cols=34 Identities=9% Similarity=0.226 Sum_probs=30.9
Q ss_pred ecCCccchhhhhHHHHhhhcceeeccCcchhhhh
Q psy12535 47 SLSGGQRARISLARAVYKRADVYLLDDPLSAVDA 80 (209)
Q Consensus 47 ~LSgGqrQRlaiARal~~~p~illLDEPts~LD~ 80 (209)
.||.++++|++.|...+.+++++|.|+|...++.
T Consensus 109 ~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~~ 142 (338)
T 4a1f_A 109 RLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIEQ 142 (338)
T ss_dssp CCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHHH
T ss_pred CCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHHH
Confidence 6899999999999999999999999999876664
No 155
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=81.55 E-value=0.084 Score=47.94 Aligned_cols=26 Identities=23% Similarity=0.130 Sum_probs=22.6
Q ss_pred cceecCCccchhhhhHHHHhhhcceeec
Q psy12535 44 KGVSLSGGQRARISLARAVYKRADVYLL 71 (209)
Q Consensus 44 ~g~~LSgGqrQRlaiARal~~~p~illL 71 (209)
....|||||+|| |||+++.+|+++.-
T Consensus 290 ~~~~LSgg~~QR--LaraL~~~p~~~~~ 315 (418)
T 1p9r_A 290 ISSSLLGVLAQR--LVRTLCPDCKEPYE 315 (418)
T ss_dssp HHHHEEEEEEEE--EEEEECTTTCEEEE
T ss_pred HHHHHHHHHHHH--hhhhhcCCCCccCC
Confidence 345799999999 99999999999763
No 156
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=79.38 E-value=0.86 Score=35.42 Aligned_cols=37 Identities=22% Similarity=0.335 Sum_probs=31.6
Q ss_pred hhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhh
Q psy12535 54 ARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCIT 92 (209)
Q Consensus 54 QRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~ 92 (209)
.....|++++.+|.++++| ||++|......+++.+..
T Consensus 128 ~~~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~ 164 (199)
T 2f9l_A 128 VPTDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILT 164 (199)
T ss_dssp SCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHH
Confidence 3467799999999999999 999999988888886543
No 157
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=77.32 E-value=0.73 Score=40.10 Aligned_cols=43 Identities=19% Similarity=0.210 Sum_probs=30.7
Q ss_pred eecCCccchhhhhHHHHhhhcceeecc-Ccchhhhhhhhhhhhhh
Q psy12535 46 VSLSGGQRARISLARAVYKRADVYLLD-DPLSAVDAHVGKHLFED 89 (209)
Q Consensus 46 ~~LSgGqrQRlaiARal~~~p~illLD-EPts~LD~~~~~~~~~~ 89 (209)
..+|+|++|++. +.+...++-++++| ++.+++|......++..
T Consensus 230 ~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~ 273 (357)
T 2e87_A 230 SERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEE 273 (357)
T ss_dssp TTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHH
T ss_pred hhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHH
Confidence 356788887765 55555677788999 99998887666555553
No 158
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=74.43 E-value=2 Score=33.54 Aligned_cols=70 Identities=9% Similarity=0.162 Sum_probs=38.9
Q ss_pred cCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhhhhhhc
Q psy12535 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSF 127 (209)
Q Consensus 48 LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (209)
.+.|+.+|..+++.+..+|+.+... .+.++|.....+.+ .+...
T Consensus 60 ~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~---------------------------------~~~~~- 103 (206)
T 1jjv_A 60 TEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQ---------------------------------KLAEQ- 103 (206)
T ss_dssp ------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHH---------------------------------HHHTC-
T ss_pred ccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHH---------------------------------HHHhc-
Confidence 3678999999999988888754433 44556543333322 11111
Q ss_pred cccceeeeeeeehhee---cccceEEEeec
Q psy12535 128 LKEKTVMLITHQIQYL---THVDHVMLLEK 154 (209)
Q Consensus 128 ~~~~TiIvitH~l~~l---~~~DrV~~L~~ 154 (209)
.+.++|+.+|.+... ..+|.+++++-
T Consensus 104 -~~~~vv~~~~~l~e~~~~~~~d~vi~l~~ 132 (206)
T 1jjv_A 104 -TAPYTLFVVPLLIENKLTALCDRILVVDV 132 (206)
T ss_dssp -CSSEEEEECTTTTTTTCGGGCSEEEEEEC
T ss_pred -CCCEEEEEechhhhcCcHhhCCEEEEEEC
Confidence 245788888866442 45799999853
No 159
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=74.03 E-value=0.5 Score=42.10 Aligned_cols=28 Identities=14% Similarity=0.046 Sum_probs=20.8
Q ss_pred CCceeecccceecCCccchhhhhHHHHhh
Q psy12535 36 GDRTLVGDKGVSLSGGQRARISLARAVYK 64 (209)
Q Consensus 36 g~~t~vg~~g~~LSgGqrQRlaiARal~~ 64 (209)
|+....+....+|| ||+||++||++++.
T Consensus 303 gl~~f~~~~~~~lS-G~~~r~ala~gli~ 330 (358)
T 2rcn_A 303 GHCKYRDCKHDADP-GCAIREAVENGAIA 330 (358)
T ss_dssp TCSSSTTCCSSSCT-TCHHHHHHHHTSSC
T ss_pred CCchhcCCCcccCC-HHHHHHHHHhcCCC
Confidence 33444455667899 99999999998753
No 160
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=72.36 E-value=3.1 Score=33.95 Aligned_cols=69 Identities=16% Similarity=0.106 Sum_probs=42.7
Q ss_pred hhhhhHHHHh--hhcceeeccCcchhhhh--hhhhhhhhhhhhccccCCCCccccchhhhhcccccccchhhhhhhhccc
Q psy12535 54 ARISLARAVY--KRADVYLLDDPLSAVDA--HVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLK 129 (209)
Q Consensus 54 QRlaiARal~--~~p~illLDEPts~LD~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (209)
..+..|+..+ .+.|++||||.+.+++. .....+++ ++... -.
T Consensus 107 ~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~---------------------------------~l~~R-p~ 152 (196)
T 1g5t_A 107 AVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVIS---------------------------------ALNAR-PG 152 (196)
T ss_dssp HHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHH---------------------------------HHHTS-CT
T ss_pred HHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHH---------------------------------HHHhC-cC
Confidence 3455566666 56799999999987554 22233333 33221 13
Q ss_pred cceeeeeeeehh--eecccceEEEeeccc
Q psy12535 130 EKTVMLITHQIQ--YLTHVDHVMLLEKGS 156 (209)
Q Consensus 130 ~~TiIvitH~l~--~l~~~DrV~~L~~G~ 156 (209)
...||++++... .++.+|.|--|+.-+
T Consensus 153 ~~~vIlTGr~ap~~l~e~AD~VTem~~vk 181 (196)
T 1g5t_A 153 HQTVIITGRGCHRDILDLADTVSELRPVK 181 (196)
T ss_dssp TCEEEEECSSCCHHHHHHCSEEEECCCSC
T ss_pred CCEEEEECCCCcHHHHHhCcceeeeccee
Confidence 557777777553 356789999887543
No 161
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=71.98 E-value=0.18 Score=42.07 Aligned_cols=30 Identities=27% Similarity=0.333 Sum_probs=24.7
Q ss_pred cceecCCccchhhhhHHHHhhhcceeeccCcc
Q psy12535 44 KGVSLSGGQRARISLARAVYKRADVYLLDDPL 75 (209)
Q Consensus 44 ~g~~LSgGqrQRlaiARal~~~p~illLDEPt 75 (209)
....|||||+||+.|++|+.++|++ ||+++
T Consensus 166 ll~~lsgg~~~~~~i~~a~t~~p~~--ld~~l 195 (278)
T 1iy2_A 166 LLVEMDGFEKDTAIVVMAATNRPDI--LDPAL 195 (278)
T ss_dssp HHHHHTTCCTTCCEEEEEEESCTTS--SCHHH
T ss_pred HHHHHhCCCCCCCEEEEEecCCchh--CCHhH
Confidence 3457999999999999999999987 56443
No 162
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=71.89 E-value=0.21 Score=40.83 Aligned_cols=30 Identities=27% Similarity=0.333 Sum_probs=24.9
Q ss_pred cceecCCccchhhhhHHHHhhhcceeeccCcc
Q psy12535 44 KGVSLSGGQRARISLARAVYKRADVYLLDDPL 75 (209)
Q Consensus 44 ~g~~LSgGqrQRlaiARal~~~p~illLDEPt 75 (209)
-...|||||+||+.|++|+.++|++ +|+++
T Consensus 142 ll~~l~g~~~~~~~i~~a~t~~p~~--ld~~l 171 (254)
T 1ixz_A 142 LLVEMDGFEKDTAIVVMAATNRPDI--LDPAL 171 (254)
T ss_dssp HHHHHHTCCTTCCEEEEEEESCGGG--SCGGG
T ss_pred HHHHHhCCCCCCCEEEEEccCCchh--CCHHH
Confidence 3457899999999999999999987 56554
No 163
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=71.57 E-value=2.9 Score=35.00 Aligned_cols=29 Identities=14% Similarity=0.182 Sum_probs=20.0
Q ss_pred cCCccchhhhhHHHHhhhcceeeccCcch
Q psy12535 48 LSGGQRARISLARAVYKRADVYLLDDPLS 76 (209)
Q Consensus 48 LSgGqrQRlaiARal~~~p~illLDEPts 76 (209)
+.|.......+..++..+|+++|+||+-.
T Consensus 67 ~~~~~~~e~~l~~~L~~~pdlvIVDElG~ 95 (228)
T 2r8r_A 67 YRGMTLEEMDLDALLKAAPSLVLVDELAH 95 (228)
T ss_dssp ETTEEEEECCHHHHHHHCCSEEEESCTTC
T ss_pred cCCcccccccHHHHHhcCCCEEEEeCCCC
Confidence 44444444556666778999999999764
No 164
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=71.37 E-value=1.2 Score=38.77 Aligned_cols=29 Identities=7% Similarity=-0.030 Sum_probs=18.1
Q ss_pred cceeeeeeeehhee---------cc-cceEEEeecccee
Q psy12535 130 EKTVMLITHQIQYL---------TH-VDHVMLLEKGSVE 158 (209)
Q Consensus 130 ~~TiIvitH~l~~l---------~~-~DrV~~L~~G~i~ 158 (209)
+.|+|++||.-... .. .-.|.++..|+-+
T Consensus 269 ~it~iilTKlD~~a~~G~~l~~~~~~~~pi~~i~~Ge~v 307 (328)
T 3e70_C 269 KIDGIILTKLDADARGGAALSISYVIDAPILFVGVGQGY 307 (328)
T ss_dssp CCCEEEEECGGGCSCCHHHHHHHHHHTCCEEEEECSSST
T ss_pred CCCEEEEeCcCCccchhHHHHHHHHHCCCEEEEeCCCCc
Confidence 67999999943221 11 2467777777654
No 165
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=71.05 E-value=1.9 Score=39.21 Aligned_cols=34 Identities=3% Similarity=0.003 Sum_probs=28.5
Q ss_pred hhhHHHHhhhcceeeccCcchhhhhhhhhhhhhh
Q psy12535 56 ISLARAVYKRADVYLLDDPLSAVDAHVGKHLFED 89 (209)
Q Consensus 56 laiARal~~~p~illLDEPts~LD~~~~~~~~~~ 89 (209)
+.|+++|..+++|+++|+|+..|.+.....++..
T Consensus 167 ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~ 200 (427)
T 2qag_B 167 LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIK 200 (427)
T ss_dssp HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHH
T ss_pred HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHH
Confidence 7899999999999999999999987655555543
No 166
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=68.24 E-value=4.7 Score=34.35 Aligned_cols=33 Identities=12% Similarity=0.273 Sum_probs=29.6
Q ss_pred cCCccchhhhhHHHHhhhcceeeccCcchhhhh
Q psy12535 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVDA 80 (209)
Q Consensus 48 LSgGqrQRlaiARal~~~p~illLDEPts~LD~ 80 (209)
||.++++|+..|...+.++++++.|+|...++.
T Consensus 134 l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~~~~ 166 (315)
T 3bh0_A 134 FASEDWGKLSMAIGEISNSNINIFDKAGQSVNY 166 (315)
T ss_dssp HCSSCHHHHHHHHHHHHTSCEEEECCSCCBHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEECCCCCCHHH
Confidence 999999999999999999999999999766654
No 167
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=66.14 E-value=1 Score=39.13 Aligned_cols=42 Identities=10% Similarity=0.037 Sum_probs=35.1
Q ss_pred eecCCccchhhhhHHHHhh------hcceeeccCcchhhhhhhhhhhhhhhh
Q psy12535 46 VSLSGGQRARISLARAVYK------RADVYLLDDPLSAVDAHVGKHLFEDCI 91 (209)
Q Consensus 46 ~~LSgGqrQRlaiARal~~------~p~illLDEPts~LD~~~~~~~~~~~~ 91 (209)
..+|+|++|++..|++++. .|+++. +|++|......+++.+.
T Consensus 209 ~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~ 256 (337)
T 2qm8_A 209 ERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIE 256 (337)
T ss_dssp HHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHH
Confidence 4679999999999999887 688876 99999988888877553
No 168
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=65.15 E-value=3 Score=38.96 Aligned_cols=43 Identities=12% Similarity=0.169 Sum_probs=35.2
Q ss_pred eecCCccchhhhhHHHHhhhcceeeccCcchhhhhhhhhhhhhh
Q psy12535 46 VSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFED 89 (209)
Q Consensus 46 ~~LSgGqrQRlaiARal~~~p~illLDEPts~LD~~~~~~~~~~ 89 (209)
..+|+|++|++..++....++.+|+|||... |++.....++..
T Consensus 182 g~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~ 224 (604)
T 3k1j_A 182 GGLGTPAHERVEPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTA 224 (604)
T ss_dssp --CCCCGGGGEECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHH
T ss_pred CCccccccccccCceeeecCCCEEEEechhh-CCHHHHHHHHHH
Confidence 4699999999999999999999999999887 777666665553
No 169
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=63.26 E-value=4.5 Score=33.96 Aligned_cols=15 Identities=27% Similarity=0.191 Sum_probs=13.2
Q ss_pred cceeeccCcchhhhh
Q psy12535 66 ADVYLLDDPLSAVDA 80 (209)
Q Consensus 66 p~illLDEPts~LD~ 80 (209)
|.||++||+....+.
T Consensus 129 ~~vlilDE~~~l~~~ 143 (386)
T 2qby_A 129 QVVIVLDEIDAFVKK 143 (386)
T ss_dssp CEEEEEETHHHHHHS
T ss_pred eEEEEEcChhhhhcc
Confidence 889999999998865
No 170
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=61.41 E-value=3.6 Score=34.85 Aligned_cols=22 Identities=14% Similarity=0.173 Sum_probs=15.1
Q ss_pred hhcceeeccCcchhhhhhhhhhh
Q psy12535 64 KRADVYLLDDPLSAVDAHVGKHL 86 (209)
Q Consensus 64 ~~p~illLDEPts~LD~~~~~~~ 86 (209)
.+|.|++|||+... |......+
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L 145 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTF 145 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHH
T ss_pred CCeEEEEEECcccc-chHHHHHH
Confidence 35789999999876 55444333
No 171
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=61.00 E-value=8.8 Score=32.67 Aligned_cols=27 Identities=15% Similarity=0.124 Sum_probs=21.3
Q ss_pred hhhhhHHHHh---hhcceeeccCcchhhhh
Q psy12535 54 ARISLARAVY---KRADVYLLDDPLSAVDA 80 (209)
Q Consensus 54 QRlaiARal~---~~p~illLDEPts~LD~ 80 (209)
+.+..++.++ .+|+++|+|+.++-...
T Consensus 189 ~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~ 218 (324)
T 2z43_A 189 AIVDDLQELVSKDPSIKLIVVDSVTSHFRA 218 (324)
T ss_dssp HHHHHHHHHHHHCTTEEEEEETTTTHHHHH
T ss_pred HHHHHHHHHHHhccCCCEEEEeCcHHHhhh
Confidence 4567777777 56999999999987754
No 172
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=55.53 E-value=7.3 Score=36.58 Aligned_cols=46 Identities=17% Similarity=0.013 Sum_probs=34.1
Q ss_pred ceeeccc------ceecCCc-cchhhhhHHHHhhhcceeeccCcchhhhhhhh
Q psy12535 38 RTLVGDK------GVSLSGG-QRARISLARAVYKRADVYLLDDPLSAVDAHVG 83 (209)
Q Consensus 38 ~t~vg~~------g~~LSgG-qrQRlaiARal~~~p~illLDEPts~LD~~~~ 83 (209)
-+++++. ...|+.+ ++|...+++.++.+|.-++++.+++++|..+.
T Consensus 149 LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~ 201 (608)
T 3szr_A 149 LTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATT 201 (608)
T ss_dssp EEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTC
T ss_pred eeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccH
Confidence 3555666 3455444 45778899999999999999999999998643
No 173
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=50.33 E-value=9.9 Score=29.28 Aligned_cols=13 Identities=38% Similarity=0.534 Sum_probs=10.5
Q ss_pred HhhhcceeeccCc
Q psy12535 62 VYKRADVYLLDDP 74 (209)
Q Consensus 62 l~~~p~illLDEP 74 (209)
.+.++++|+|||+
T Consensus 112 ~~~~~~~lilDei 124 (202)
T 2w58_A 112 YIKKVPVLMLDDL 124 (202)
T ss_dssp HHHHSSEEEEEEE
T ss_pred HhcCCCEEEEcCC
Confidence 3457889999998
No 174
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=47.39 E-value=20 Score=30.81 Aligned_cols=27 Identities=7% Similarity=0.171 Sum_probs=19.7
Q ss_pred hhhhhHHHHh----hhcceeeccCcchhhhh
Q psy12535 54 ARISLARAVY----KRADVYLLDDPLSAVDA 80 (209)
Q Consensus 54 QRlaiARal~----~~p~illLDEPts~LD~ 80 (209)
+.+..++.++ .+++++|+|..++-...
T Consensus 204 ~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~ 234 (343)
T 1v5w_A 204 ELLDYVAAKFHEEAGIFKLLIIDSIMALFRV 234 (343)
T ss_dssp HHHHHHHHHHHHSCSSEEEEEEETSGGGHHH
T ss_pred HHHHHHHHHHHhcCCCccEEEEechHHHHHH
Confidence 3445566666 45899999999987754
No 175
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=46.09 E-value=6.8 Score=34.38 Aligned_cols=47 Identities=19% Similarity=0.167 Sum_probs=34.0
Q ss_pred ecccceecCCccchhhhhH----HHH-hhhcceeeccCcchhhhhhhhhhhhhhhh
Q psy12535 41 VGDKGVSLSGGQRARISLA----RAV-YKRADVYLLDDPLSAVDAHVGKHLFEDCI 91 (209)
Q Consensus 41 vg~~g~~LSgGqrQRlaiA----Ral-~~~p~illLDEPts~LD~~~~~~~~~~~~ 91 (209)
|+.+...+|++++|++.++ +++ ..+|++ +|+|++|......+++.+.
T Consensus 298 V~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~----~~~SA~~g~gi~~L~~~I~ 349 (364)
T 2qtf_A 298 TLNKIDKINGDLYKKLDLVEKLSKELYSPIFDV----IPISALKRTNLELLRDKIY 349 (364)
T ss_dssp EEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEE----EECBTTTTBSHHHHHHHHH
T ss_pred EEECCCCCCchHHHHHHHHHHHHHHhcCCCCcE----EEEECCCCcCHHHHHHHHH
Confidence 4566666788888888877 555 434554 7999999988888777543
No 176
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=41.38 E-value=23 Score=29.49 Aligned_cols=14 Identities=50% Similarity=0.681 Sum_probs=11.3
Q ss_pred hhhcceeeccCcch
Q psy12535 63 YKRADVYLLDDPLS 76 (209)
Q Consensus 63 ~~~p~illLDEPts 76 (209)
+.++++|++||+..
T Consensus 96 ~~~~~vL~iDEi~~ 109 (324)
T 1l8q_A 96 YKSVDLLLLDDVQF 109 (324)
T ss_dssp HHTCSEEEEECGGG
T ss_pred hcCCCEEEEcCccc
Confidence 35689999999866
No 177
>1b9m_A Protein (mode); DNA-binding, gene regulation, winged helix turn helix, molybdate, OB fold, transcription; 1.75A {Escherichia coli} SCOP: a.4.5.8 b.40.6.2 b.40.6.2 PDB: 1b9n_A 1o7l_A 1h9s_A 1h9r_A 1h9s_B
Probab=40.58 E-value=8.3 Score=31.49 Aligned_cols=31 Identities=16% Similarity=0.157 Sum_probs=21.6
Q ss_pred eeecccceecCCccchhhhhHHHHhhhccee
Q psy12535 39 TLVGDKGVSLSGGQRARISLARAVYKRADVY 69 (209)
Q Consensus 39 t~vg~~g~~LSgGqrQRlaiARal~~~p~il 69 (209)
.++.+....||||+.|+...+++|+..|+-+
T Consensus 65 ~L~~R~~~~lsg~~~~lt~~g~~l~~~~~~~ 95 (265)
T 1b9m_A 65 ILVERATGGKGGGGAVLTRYGQRLIQLYDLL 95 (265)
T ss_dssp CCEEECCCC-----EEECHHHHHHHHHHHHH
T ss_pred CeEEecCCCCCCCceEECHHHHHHHHHHHHH
Confidence 4566677799999999999999999998854
No 178
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=39.04 E-value=43 Score=26.98 Aligned_cols=22 Identities=14% Similarity=0.114 Sum_probs=15.6
Q ss_pred hhHHHHhhhcceeeccCcchhh
Q psy12535 57 SLARAVYKRADVYLLDDPLSAV 78 (209)
Q Consensus 57 aiARal~~~p~illLDEPts~L 78 (209)
.+..+....|.||++||.-.-.
T Consensus 102 ~~~~~~~~~~~vl~iDEid~l~ 123 (285)
T 3h4m_A 102 IFKLAKEKAPSIIFIDEIDAIA 123 (285)
T ss_dssp HHHHHHHTCSEEEEEETTHHHH
T ss_pred HHHHHHHcCCeEEEEECHHHhc
Confidence 3445555678999999986543
No 179
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=38.09 E-value=9.1 Score=31.43 Aligned_cols=31 Identities=19% Similarity=0.223 Sum_probs=25.4
Q ss_pred CccchhhhhHHHHhhhcceeeccCcchhhhh
Q psy12535 50 GGQRARISLARAVYKRADVYLLDDPLSAVDA 80 (209)
Q Consensus 50 gGqrQRlaiARal~~~p~illLDEPts~LD~ 80 (209)
++++.+..++.+...+|.+|++||+.+.++.
T Consensus 98 ~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~ 128 (297)
T 3b9p_A 98 GEKLVRALFAVARHMQPSIIFIDEVDSLLSE 128 (297)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTSBC
T ss_pred HHHHHHHHHHHHHHcCCcEEEeccHHHhccc
Confidence 3566777888888889999999999887765
No 180
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=37.21 E-value=31 Score=30.08 Aligned_cols=25 Identities=16% Similarity=0.251 Sum_probs=18.9
Q ss_pred hhhhhHHHHh--hhcceeeccCcchhh
Q psy12535 54 ARISLARAVY--KRADVYLLDDPLSAV 78 (209)
Q Consensus 54 QRlaiARal~--~~p~illLDEPts~L 78 (209)
+-+.+++.++ .+++++|+|.+++-.
T Consensus 128 ~~~~~~~~l~~~~~~~lVVIDsl~~l~ 154 (356)
T 1u94_A 128 QALEICDALARSGAVDVIVVDSVAALT 154 (356)
T ss_dssp HHHHHHHHHHHHTCCSEEEEECGGGCC
T ss_pred HHHHHHHHHHhccCCCEEEEcCHHHhc
Confidence 4556777775 568999999998754
No 181
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=36.43 E-value=16 Score=33.94 Aligned_cols=29 Identities=14% Similarity=0.196 Sum_probs=18.4
Q ss_pred chhhhhHHHHh-hhc-ceeeccCcchhhhhh
Q psy12535 53 RARISLARAVY-KRA-DVYLLDDPLSAVDAH 81 (209)
Q Consensus 53 rQRlaiARal~-~~p-~illLDEPts~LD~~ 81 (209)
+|++.++|++. ..| .+||..+|+++.|..
T Consensus 398 ~kiv~iar~l~~~~P~evLLvLDattGq~al 428 (503)
T 2yhs_A 398 KKIVRVMKKLDVEAPHEVMLTIDASTGQNAV 428 (503)
T ss_dssp HHHHHHHHTTCTTCSSEEEEEEEGGGTHHHH
T ss_pred HHHHHHHHHhccCCCCeeEEEecCcccHHHH
Confidence 36777777653 446 455555688887664
No 182
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=35.59 E-value=30 Score=29.84 Aligned_cols=20 Identities=5% Similarity=0.144 Sum_probs=14.7
Q ss_pred hhhccccceeeeeeeehhee
Q psy12535 124 RTSFLKEKTVMLITHQIQYL 143 (209)
Q Consensus 124 ~~~~~~~~TiIvitH~l~~l 143 (209)
++..+.+..++++||.++.+
T Consensus 291 ~~~Rk~g~~~~~~tQ~~~d~ 310 (392)
T 4ag6_A 291 KRIRKYNGSLIVISQNVIDF 310 (392)
T ss_dssp HHGGGGTCEEEEEESCGGGG
T ss_pred HHhhhhCeEEEEEcCCHHHh
Confidence 33344588999999988765
No 183
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=33.45 E-value=1.6 Score=39.00 Aligned_cols=38 Identities=13% Similarity=-0.004 Sum_probs=31.8
Q ss_pred ecccceecCCccchhhhhHHHHhhhcceee-ccCcchhh
Q psy12535 41 VGDKGVSLSGGQRARISLARAVYKRADVYL-LDDPLSAV 78 (209)
Q Consensus 41 vg~~g~~LSgGqrQRlaiARal~~~p~ill-LDEPts~L 78 (209)
+......+++|++||++.+.+++..|++++ ||+|+.-+
T Consensus 276 ld~~~~~l~~~~~~rl~~~~~l~~~pDLliyLd~~~~~l 314 (377)
T 1svm_A 276 VTMNEYSVPKTLQARFVKQIDFRPKDYLKHCLERSEFLL 314 (377)
T ss_dssp EEECSCCCCHHHHTTEEEEEECCCCHHHHHHHHTCTHHH
T ss_pred cChhHHhhcHHHHHHHhhhhccCCCCCeEEEEeCCHHHH
Confidence 344556788999999999999999999988 99999844
No 184
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=31.80 E-value=32 Score=26.46 Aligned_cols=13 Identities=23% Similarity=0.314 Sum_probs=9.9
Q ss_pred hhcceeeccCcch
Q psy12535 64 KRADVYLLDDPLS 76 (209)
Q Consensus 64 ~~p~illLDEPts 76 (209)
.+|.++++||...
T Consensus 103 ~~~~vliiDe~~~ 115 (242)
T 3bos_A 103 EQFDLICIDDVDA 115 (242)
T ss_dssp GGSSEEEEETGGG
T ss_pred cCCCEEEEecccc
Confidence 5688999999544
No 185
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=30.74 E-value=28 Score=28.44 Aligned_cols=25 Identities=16% Similarity=0.191 Sum_probs=17.3
Q ss_pred ccceeeeeeee-----------hheecccceEEEee
Q psy12535 129 KEKTVMLITHQ-----------IQYLTHVDHVMLLE 153 (209)
Q Consensus 129 ~~~TiIvitH~-----------l~~l~~~DrV~~L~ 153 (209)
.+.+||++-|+ ...+..||.|.-|+
T Consensus 115 ~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 115 NGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 37789999983 22345678888775
No 186
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=28.98 E-value=26 Score=29.66 Aligned_cols=12 Identities=42% Similarity=0.523 Sum_probs=9.6
Q ss_pred hhhcceeeccCc
Q psy12535 63 YKRADVYLLDDP 74 (209)
Q Consensus 63 ~~~p~illLDEP 74 (209)
+.++++||+||.
T Consensus 212 ~~~~~lLiiDdi 223 (308)
T 2qgz_A 212 VKNVPVLILDDI 223 (308)
T ss_dssp HHTSSEEEEETC
T ss_pred hcCCCEEEEcCC
Confidence 456789999987
No 187
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=27.43 E-value=76 Score=26.38 Aligned_cols=18 Identities=17% Similarity=-0.077 Sum_probs=14.1
Q ss_pred HhhhcceeeccCcchhhh
Q psy12535 62 VYKRADVYLLDDPLSAVD 79 (209)
Q Consensus 62 l~~~p~illLDEPts~LD 79 (209)
.+.+.+++++||..-..+
T Consensus 87 ~~~~~dvViIDEaQF~~~ 104 (234)
T 2orv_A 87 EALGVAVIGIDEGQFFPD 104 (234)
T ss_dssp HHTTCSEEEESSGGGCTT
T ss_pred HhccCCEEEEEchhhhhh
Confidence 347789999999887643
No 188
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=27.01 E-value=63 Score=28.90 Aligned_cols=33 Identities=12% Similarity=0.273 Sum_probs=27.2
Q ss_pred cCCccchhhhhHHHHhhhcceeeccCcchhhhh
Q psy12535 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVDA 80 (209)
Q Consensus 48 LSgGqrQRlaiARal~~~p~illLDEPts~LD~ 80 (209)
|+..+.+++.-|...+.+.+++|.|+|...++.
T Consensus 263 l~~~~~~~l~~a~~~l~~~~l~i~d~~~~s~~~ 295 (444)
T 3bgw_A 263 FASEDWGKLSMAIGEISNSNINIFDKAGQSVNY 295 (444)
T ss_dssp TCCSCHHHHHHHHHHHHTSCEEEECCSSCBHHH
T ss_pred CCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHH
Confidence 888899999988888888899999988655543
No 189
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=26.38 E-value=2.6 Score=33.70 Aligned_cols=37 Identities=11% Similarity=0.143 Sum_probs=18.8
Q ss_pred ceeeeeeeehheec-ccceEEEeeccceeecchhhHHh
Q psy12535 131 KTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQLL 167 (209)
Q Consensus 131 ~TiIvitH~l~~l~-~~DrV~~L~~G~i~~~G~~~~l~ 167 (209)
..+|+++|+++.+. ..++++-..+++.....+.++++
T Consensus 186 ~d~vI~n~~~e~~~~~l~~~i~~~~~~~~~~~~~~~~~ 223 (231)
T 3lnc_A 186 YDYVIVNEDIEETADRISNILRAEQMKTCRQVGLRELL 223 (231)
T ss_dssp SSEEEECSSHHHHHHHHHHHHHHHHTBGGGEESHHHHH
T ss_pred CeEEEECcCHHHHHHHHHHHHHHHhhccccCcchhhHh
Confidence 45666666655432 34555444455554444444443
No 190
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=24.34 E-value=6.1 Score=36.48 Aligned_cols=30 Identities=27% Similarity=0.333 Sum_probs=26.0
Q ss_pred ceecCCccchhhhhHHHHhhhcceeeccCcch
Q psy12535 45 GVSLSGGQRARISLARAVYKRADVYLLDDPLS 76 (209)
Q Consensus 45 g~~LSgGqrQRlaiARal~~~p~illLDEPts 76 (209)
...||||++|+..|++|..++|++ ||+++-
T Consensus 158 L~~Ldg~~~~~~viviAatn~p~~--LD~aLl 187 (499)
T 2dhr_A 158 LVEMDGFEKDTAIVVMAATNRPDI--LDPALL 187 (499)
T ss_dssp HHHGGGCCSSCCCEEEECCSCGGG--SCTTTS
T ss_pred HHHhcccccCccEEEEEecCChhh--cCcccc
Confidence 346899999999999999999987 888775
No 191
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=22.47 E-value=60 Score=24.37 Aligned_cols=17 Identities=35% Similarity=0.587 Sum_probs=11.8
Q ss_pred hcceeeccCcchhhhhhh
Q psy12535 65 RADVYLLDDPLSAVDAHV 82 (209)
Q Consensus 65 ~p~illLDEPts~LD~~~ 82 (209)
+|.++++||.-. ++...
T Consensus 126 ~~~vlviDe~~~-l~~~~ 142 (250)
T 1njg_A 126 RFKVYLIDEVHM-LSRHS 142 (250)
T ss_dssp SSEEEEEETGGG-SCHHH
T ss_pred CceEEEEECccc-ccHHH
Confidence 468999999755 44433
No 192
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=21.10 E-value=72 Score=27.12 Aligned_cols=25 Identities=8% Similarity=0.137 Sum_probs=21.4
Q ss_pred cCCccchhhhhHHHHhhhcceeecc
Q psy12535 48 LSGGQRARISLARAVYKRADVYLLD 72 (209)
Q Consensus 48 LSgGqrQRlaiARal~~~p~illLD 72 (209)
.++.++++..+++..+.+|+++||.
T Consensus 155 ~~~~~~~~~~~~~~~i~~~d~iilv 179 (360)
T 3t34_A 155 SDSIVKDIENMVRSYIEKPNCIILA 179 (360)
T ss_dssp CSSHHHHHHHHHHHHHHSSSEEEEE
T ss_pred chhHHHHHHHHHHHHhhcCCeEEEE
Confidence 4567788899999999999977776
No 193
>2hi6_A UPF0107 protein AF0055; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Archaeoglobus fulgidus} SCOP: c.8.2.3
Probab=20.87 E-value=39 Score=26.16 Aligned_cols=36 Identities=14% Similarity=0.207 Sum_probs=23.8
Q ss_pred eeeeehheecccceEEEeeccceeecch--hhHHhhcc
Q psy12535 135 LITHQIQYLTHVDHVMLLEKGSVEAFGT--TTQLLASG 170 (209)
Q Consensus 135 vitH~l~~l~~~DrV~~L~~G~i~~~G~--~~~l~~~~ 170 (209)
-..|.+.--..+++|++|-.|+=...|+ .-++..++
T Consensus 39 d~~H~L~G~siagkILv~P~gkGSt~gS~vl~~l~~~g 76 (141)
T 2hi6_A 39 KEDCEIKGESVAGRILVFPGGKGSTVGSYVLLNLRKNG 76 (141)
T ss_dssp CSCSSSTTCBCTTSEEEESCCSCCSSCTTHHHHHHHHT
T ss_pred cCCCCcCCCcccCeEEEecCCCCccHHHHHHHHHHHCC
Confidence 4556776667789999998776554444 44555544
No 194
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=20.40 E-value=11 Score=32.05 Aligned_cols=17 Identities=24% Similarity=0.296 Sum_probs=13.6
Q ss_pred ccceecCCccchhhhhH
Q psy12535 43 DKGVSLSGGQRARISLA 59 (209)
Q Consensus 43 ~~g~~LSgGqrQRlaiA 59 (209)
.....||+|++||++++
T Consensus 158 ~~~~~Ls~~l~sR~~l~ 174 (334)
T 1in4_A 158 TRSGLLSSPLRSRFGII 174 (334)
T ss_dssp SCGGGSCHHHHTTCSEE
T ss_pred CCcccCCHHHHHhcCce
Confidence 34558999999999766
Done!