RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy12535
(209 letters)
>gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of
multidrug resistance-associated protein, subfamily C.
This subfamily is also known as MRP (multidrug
resistance-associated protein). Some of the MRP members
have five additional transmembrane segments in their
N-terminus, but the function of these additional
membrane-spanning domains is not clear. The MRP was
found in the multidrug-resisting lung cancer cell in
which p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions, such as
glutathione, glucuronate, and sulfate.
Length = 204
Score = 179 bits (458), Expect = 2e-57
Identities = 65/139 (46%), Positives = 84/139 (60%), Gaps = 32/139 (23%)
Query: 18 RRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSA 77
+V+K CAL+ D LP GD T +G+KG++LSGGQ+ RISLARAVY AD+YLLDDPLSA
Sbjct: 98 EKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSA 157
Query: 78 VDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLIT 137
VDAHVG+H+FE+CI G L L KT +L+T
Sbjct: 158 VDAHVGRHIFENCI-------------------------LGLL-------LNNKTRILVT 185
Query: 138 HQIQYLTHVDHVMLLEKGS 156
HQ+Q L H D +++L+ G
Sbjct: 186 HQLQLLPHADQIVVLDNGR 204
>gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein
(MRP). This model describes multi drug
resistance-associated protein (MRP) in eukaryotes. The
multidrug resistance-associated protein is an integral
membrane protein that causes multidrug resistance when
overexpressed in mammalian cells. It belongs to ABC
transporter superfamily. The protein topology and
function was experimentally demonstrated by epitope
tagging and immunofluorescence. Insertion of tags in the
critical regions associated with drug efflux, abrogated
its function. The C-terminal domain seem to highly
conserved [Transport and binding proteins, Other].
Length = 1522
Score = 142 bits (358), Expect = 5e-39
Identities = 74/183 (40%), Positives = 99/183 (54%), Gaps = 35/183 (19%)
Query: 11 GHP--DPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADV 68
G + ++V++ CAL D LPSGDRT +G+KGV+LSGGQ+ R+SLARAVY AD+
Sbjct: 722 GKALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADI 781
Query: 69 YLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFL 128
YL DDPLSAVDAHVGKH+FE I G G L
Sbjct: 782 YLFDDPLSAVDAHVGKHIFEHVI-----------------------GPEG--------VL 810
Query: 129 KEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGLDFTQLLD--APEEEDKA 186
K KT +L+TH I YL VD ++++ G + G+ +LL F + L AP+E+
Sbjct: 811 KNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELLQRDGAFAEFLRTYAPDEQQGH 870
Query: 187 ENE 189
+
Sbjct: 871 LED 873
Score = 46.5 bits (110), Expect = 4e-06
Identities = 40/155 (25%), Positives = 67/155 (43%), Gaps = 35/155 (22%)
Query: 26 LKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKH 85
LK + LP + G +LS GQR + LARA+ ++ + +LD+ +AVD
Sbjct: 1400 LKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLET--- 1456
Query: 86 LFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTH 145
++ I S +RT F ++ TV+ I H++ +
Sbjct: 1457 --DNLIQ----------------------------STIRTQF-EDCTVLTIAHRLNTIMD 1485
Query: 146 VDHVMLLEKGSVEAFGTTTQLLAS-GLDFTQLLDA 179
V++L+KG V FG + LL G+ ++ DA
Sbjct: 1486 YTRVIVLDKGEVAEFGAPSNLLQQRGIFYSMAKDA 1520
>gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional.
Length = 1622
Score = 138 bits (349), Expect = 9e-38
Identities = 65/194 (33%), Positives = 107/194 (55%), Gaps = 38/194 (19%)
Query: 19 RVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAV 78
R + V AL+ D LP GD T +G++GV++SGGQ+ R+S+ARAVY +DVY+ DDPLSA+
Sbjct: 712 RAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSAL 771
Query: 79 DAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITH 138
DAHVG+ +F+ CI L+ KT +L+T+
Sbjct: 772 DAHVGRQVFDKCIKDE---------------------------------LRGKTRVLVTN 798
Query: 139 QIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGLDFTQLLDAP---EE--EDKAENEVDDN 193
Q+ +L+ VD ++L+ +G ++ GT +L +G F +L++ EE E+ E E D
Sbjct: 799 QLHFLSQVDRIILVHEGMIKEEGTYEELSNNGPLFQKLMENAGKMEEYVEENGEEEDDQT 858
Query: 194 ASGTLLHPRQSSVR 207
+S + + ++++
Sbjct: 859 SSKPVANGNANNLK 872
Score = 42.8 bits (101), Expect = 6e-05
Identities = 35/137 (25%), Positives = 55/137 (40%), Gaps = 52/137 (37%)
Query: 41 VGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPR 100
V + G + S GQR +SLARA+ +R+ + +LD+ +AVD
Sbjct: 1368 VSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVD--------------------- 1406
Query: 101 FDSRWGRSFFGSALGVRGALSLVRTSFLKEKTV--------ML-ITHQIQYLTHVDHVML 151
VRT L +KT+ ML I H++ + D +++
Sbjct: 1407 ----------------------VRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILV 1444
Query: 152 LEKGSVEAFGTTTQLLA 168
L+ G V F T LL+
Sbjct: 1445 LDAGRVVEFDTPENLLS 1461
>gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional.
Length = 1560
Score = 135 bits (341), Expect = 1e-36
Identities = 69/176 (39%), Positives = 92/176 (52%), Gaps = 35/176 (19%)
Query: 20 VVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVD 79
V+V L+ D AQL G T +G+KGV+LSGGQ+AR+SLARAVY DVYLLDDPLSA+D
Sbjct: 755 AVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALD 814
Query: 80 AHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQ 139
AHVG+ + E+C G L KT +L THQ
Sbjct: 815 AHVGERVVEECFLGA---------------------------------LAGKTRVLATHQ 841
Query: 140 IQYLTHVDHVMLLEKGSVEAFGTTTQLLASGLDFTQLLDAPEEEDKAENEVDDNAS 195
+ + D+V+ L G VE G++ + + L T L A +E+K E D +A
Sbjct: 842 VHVVPRADYVVALGDGRVEFSGSSADFMRTSLYAT--LAAELKENKDSKEGDADAE 895
>gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic
fibrosis transmembrane regulator, subfamily C. The CFTR
subfamily domain 1. The cystic fibrosis transmembrane
regulator (CFTR), the product of the gene mutated in
patients with cystic fibrosis, has adapted the ABC
transporter structural motif to form a tightly regulated
anion channel at the apical surface of many epithelia.
Use of the term assembly of a functional ion channel
implies the coming together of subunits, or at least
smaller not-yet functional components of the active
whole. In fact, on the basis of current knowledge only
the CFTR polypeptide itself is required to form an ATP-
and protein kinase A-dependent low-conductance chloride
channel of the type present in the apical membrane of
many epithelial cells. CFTR displays the typical
organization (IM-ABC)2 and carries a characteristic
hydrophilic R-domain that separates IM1-ABC1 from
IM2-ABC2.
Length = 282
Score = 112 bits (282), Expect = 2e-30
Identities = 57/160 (35%), Positives = 85/160 (53%), Gaps = 33/160 (20%)
Query: 18 RRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSA 77
+ VVK C L+ED + P D T++G+ G++LSGGQRARISLARAVYK AD+YLLD P
Sbjct: 130 KSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGY 189
Query: 78 VDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLIT 137
+D K +FE C+ L + KT +L+T
Sbjct: 190 LDVFTEKEIFESCVCKL---------------------------------MANKTRILVT 216
Query: 138 HQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGLDFTQLL 177
++++L D +++L +GS +GT ++L + DF+ L
Sbjct: 217 SKMEHLKKADKILILHEGSSYFYGTFSELQSLRPDFSSKL 256
>gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional.
Length = 1495
Score = 115 bits (290), Expect = 7e-30
Identities = 58/179 (32%), Positives = 94/179 (52%), Gaps = 35/179 (19%)
Query: 19 RVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAV 78
R + V AL+ D LP D T +G++GV++SGGQ+ R+S+ARAVY +D+Y+ DDPLSA+
Sbjct: 712 RAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSAL 771
Query: 79 DAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITH 138
DAHV +F+ C+ LK KT +L+T+
Sbjct: 772 DAHVAHQVFDSCM---------------------------------KDELKGKTRVLVTN 798
Query: 139 QIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGLDFTQLLD--APEEEDKAENEVDDNAS 195
Q+ +L +D ++L+ +G ++ GT +L SG F +L++ + + N D+N
Sbjct: 799 QLHFLPLMDRIILVSEGMIKEEGTFAELSKSGSLFKKLMENAGKMDATQEVNTNDENIL 857
Score = 47.3 bits (112), Expect = 3e-06
Identities = 37/157 (23%), Positives = 69/157 (43%), Gaps = 34/157 (21%)
Query: 12 HPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLL 71
H D + ++ +K+ + P G V + G + S GQR +SLARA+ +R+ + +L
Sbjct: 1336 HNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVL 1395
Query: 72 DDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEK 131
D+ ++VD R DS R+ +R F K
Sbjct: 1396 DEATASVDV-------------------RTDSLIQRT--------------IREEF-KSC 1421
Query: 132 TVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLA 168
T+++I H++ + D +++L G V + + +LL+
Sbjct: 1422 TMLVIAHRLNTIIDCDKILVLSSGQVLEYDSPQELLS 1458
>gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor
regulator (CFTR). The model describes the cystis
fibrosis transmembrane conductor regulator (CFTR) in
eukaryotes. The principal role of this protein is
chloride ion conductance. The protein is predicted to
consist of 12 transmembrane domains. Mutations or
lesions in the genetic loci have been linked to the
aetiology of asthma, bronchiectasis, chronic obstructive
pulmonary disease etc. Disease-causing mutations have
been studied by 36Cl efflux assays in vitro cell
cultures and electrophysiology, all of which point to
the impairment of chloride channel stability and not the
biosynthetic processing per se [Transport and binding
proteins, Anions].
Length = 1490
Score = 115 bits (289), Expect = 9e-30
Identities = 62/172 (36%), Positives = 89/172 (51%), Gaps = 33/172 (19%)
Query: 18 RRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSA 77
V+K C L+ED A P D+T++G+ G++LSGGQRARISLARAVYK AD+YLLD P +
Sbjct: 519 TSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTH 578
Query: 78 VDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLIT 137
+D K +FE C+ L + KT +L+T
Sbjct: 579 LDVVTEKEIFESCLCKL---------------------------------MSNKTRILVT 605
Query: 138 HQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGLDFTQLLDAPEEEDKAENE 189
++++L D ++LL +G +GT ++L A DF+ LL E D E
Sbjct: 606 SKLEHLKKADKILLLHEGVCYFYGTFSELQAKRPDFSSLLLGLEAFDNFSAE 657
Score = 38.7 bits (90), Expect = 0.002
Identities = 35/170 (20%), Positives = 62/170 (36%), Gaps = 48/170 (28%)
Query: 19 RVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAV 78
+V + LK Q P ++ D G LS G + + LAR++ +A + LLD+P + +
Sbjct: 1325 KVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHL 1384
Query: 79 DA-------HVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEK 131
D K F +C
Sbjct: 1385 DPVTLQIIRKTLKQSFSNC----------------------------------------- 1403
Query: 132 TVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGLDFTQLLDAPE 181
TV+L H+++ L +++E SV+ + + +LL F Q + A +
Sbjct: 1404 TVILSEHRVEALLECQQFLVIEGSSVKQYDSIQKLLNETSLFKQAMSAAD 1453
>gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the
sulfonylurea receptor, subfamily C. The SUR domain 1.
The sulfonylurea receptor SUR is an ATP transporter of
the ABCC/MRP family with tandem ATPase binding domains.
Unlike other ABC proteins, it has no intrinsic transport
function, neither active nor passive, but associates
with the potassium channel proteins Kir6.1 or Kir6.2 to
form the ATP-sensitive potassium (K(ATP)) channel.
Within the channel complex, SUR serves as a regulatory
subunit that fine-tunes the gating of Kir6.x in response
to alterations in cellular metabolism. It constitutes a
major pharmaceutical target as it binds numerous drugs,
K(ATP) channel openers and blockers, capable of up- or
down-regulating channel activity.
Length = 218
Score = 100 bits (249), Expect = 3e-26
Identities = 46/139 (33%), Positives = 77/139 (55%), Gaps = 31/139 (22%)
Query: 18 RRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSA 77
+ V C+L+ D LP GD+T +G++G++LSGGQR RI +ARA+Y+ ++ LDDP SA
Sbjct: 111 KAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSA 170
Query: 78 VDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLIT 137
+D H+ HL ++ G L ++ ++T++L+T
Sbjct: 171 LDIHLSDHLMQE----------------------------GILKFLQDD---KRTLVLVT 199
Query: 138 HQIQYLTHVDHVMLLEKGS 156
H++QYL H D ++ ++ GS
Sbjct: 200 HKLQYLPHADWIIAMKDGS 218
>gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and
permease components [Defense mechanisms].
Length = 567
Score = 93.3 bits (232), Expect = 4e-22
Identities = 42/166 (25%), Positives = 74/166 (44%), Gaps = 34/166 (20%)
Query: 18 RRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSA 77
+K+ E A LP G T+VG++GV+LSGGQR R+++ARA+ + + +LD+ SA
Sbjct: 436 EEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILDEATSA 495
Query: 78 VDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLIT 137
+D + + LK +T ++I
Sbjct: 496 LDTETEALIQD----------------------------------ALKKLLKGRTTLIIA 521
Query: 138 HQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGLDFTQLLDAPEEE 183
H++ + + D +++L+ G + GT +LLA G + +L A
Sbjct: 522 HRLSTIKNADRIIVLDNGRIVERGTHEELLAKGGLYARLYQAQGGA 567
>gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter
membrane\ATP-binding components; Provisional.
Length = 569
Score = 79.4 bits (196), Expect = 2e-17
Identities = 49/192 (25%), Positives = 83/192 (43%), Gaps = 42/192 (21%)
Query: 11 GHPDPNSR---RVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRAD 67
G PD + V ++ ++ +D +LP G T VG++GV LSGGQ+ RIS+ARA+ A+
Sbjct: 412 GRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAE 471
Query: 68 VYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSF 127
+ +LDD LSAVD + + +WG
Sbjct: 472 ILILDDALSAVDGRTEHQILHNL------------RQWGE-------------------- 499
Query: 128 LKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLA-----SGLDFTQLLDAPEE 182
+TV++ H++ LT +++++ G + G QL + Q L+A +
Sbjct: 500 --GRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQQSGWYRDMYRYQQLEAALD 557
Query: 183 EDKAENEVDDNA 194
+ E +A
Sbjct: 558 DAPEIREEAVDA 569
>gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd
biosynthesis, ATPase and permease components [Energy
production and conversion / Posttranslational
modification, protein turnover, chaperones].
Length = 559
Score = 79.2 bits (196), Expect = 3e-17
Identities = 41/154 (26%), Positives = 67/154 (43%), Gaps = 34/154 (22%)
Query: 29 DFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFE 88
+F P G T++G+ G LSGGQ R++LARA+ A + LLD+P + +DA
Sbjct: 438 EFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAE------- 490
Query: 89 DCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDH 148
+ + AL K+KTV++ITH+++ D
Sbjct: 491 -----------------------TEQIILQAL----QELAKQKTVLVITHRLEDAADADR 523
Query: 149 VMLLEKGSVEAFGTTTQLLASGLDFTQLLDAPEE 182
+++L+ G + GT +L + LL E
Sbjct: 524 IVVLDNGRLVEQGTHEELSEKQGLYANLLKQQEG 557
>gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain
an N-terminal double-glycine peptidase domain [Defense
mechanisms].
Length = 709
Score = 78.4 bits (194), Expect = 5e-17
Identities = 41/163 (25%), Positives = 75/163 (46%), Gaps = 37/163 (22%)
Query: 11 GHPDPNSRRVVKVC---ALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRAD 67
G+P+ +++ E LP G T VG+ G +LSGGQR R++LARA+ +
Sbjct: 570 GNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPK 629
Query: 68 VYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSF 127
+ LLD+ SA+D + + +L++
Sbjct: 630 ILLLDEATSALDPETEAIILQ--------------------------------NLLQ--I 655
Query: 128 LKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASG 170
L+ +TV++I H++ + D +++L++G + G+ +LLA G
Sbjct: 656 LQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELLAQG 698
>gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug
resistance protein-like transporters. The MRP
(Multidrug Resistance Protein)-like transporters are
involved in drug, peptide, and lipid export. They belong
to the subfamily C of the ATP-binding cassette (ABC)
superfamily of transport proteins. The ABCC subfamily
contains transporters with a diverse functional spectrum
that includes ion transport, cell surface receptor, and
toxin secretion activities. The MRP-like family, similar
to all ABC proteins, have a common four-domain core
structure constituted by two membrane-spanning domains,
each composed of six transmembrane (TM) helices, and two
nucleotide-binding domains (NBD). ABC transporters are a
subset of nucleotide hydrolases that contain a signature
motif, Q-loop, and H-loop/switch region, in addition to,
the Walker A motif/P-loop and Walker B motif commonly
found in a number of ATP- and GTP-binding and
hydrolyzing proteins.
Length = 171
Score = 72.4 bits (179), Expect = 3e-16
Identities = 28/108 (25%), Positives = 47/108 (43%), Gaps = 34/108 (31%)
Query: 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGR 107
LSGGQR RI++ARA+ + + +LD+ SA+D + E
Sbjct: 97 LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILE------------------- 137
Query: 108 SFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKG 155
AL + K KTV++I H++ + D +++L+ G
Sbjct: 138 -----AL----------RALAKGKTVIVIAHRLSTIRDADRIIVLDDG 170
>gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein.
[Transport and binding proteins, Other].
Length = 711
Score = 74.4 bits (183), Expect = 1e-15
Identities = 47/165 (28%), Positives = 73/165 (44%), Gaps = 36/165 (21%)
Query: 13 PDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLD 72
PD K + + P+G T VG+KG LSGGQ+ RI++ARA+ ++ V +LD
Sbjct: 583 PDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILD 642
Query: 73 DPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKT 132
+ SA+DA + L E RS +T
Sbjct: 643 EATSALDAECEQLLQES-----------------RSR-------------------ASRT 666
Query: 133 VMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGLDFTQLL 177
V+LI H++ + D +++L+KGSV GT QL+ + L+
Sbjct: 667 VLLIAHRLSTVERADQILVLKKGSVVEMGTHKQLMEDQGCYKHLV 711
>gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter
membrane/ATP-binding component; Reviewed.
Length = 588
Score = 73.3 bits (181), Expect = 3e-15
Identities = 41/153 (26%), Positives = 68/153 (44%), Gaps = 34/153 (22%)
Query: 31 AQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDC 90
LP G T +GD+ LS GQ R++LARA+ + + LLD+P +++DAH
Sbjct: 469 PLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAH--------- 519
Query: 91 ITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVM 150
S V AL + + +T +++THQ++ L D +
Sbjct: 520 ---------------------SEQLVMQAL----NAASRRQTTLMVTHQLEDLAQWDQIW 554
Query: 151 LLEKGSVEAFGTTTQLLASGLDFTQLLDAPEEE 183
+++ G + G +L +G F LL +EE
Sbjct: 555 VMQDGQIVQQGDYAELSQAGGLFATLLAHRQEE 587
>gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of
iron-sulfur clusters transporter, subfamily C. ATM1 is
an ABC transporter that is expressed in the
mitochondria. Although the specific function of ATM1 is
unknown, its disruption results in the accumulation of
excess mitochondrial iron, loss of mitochondrial
cytochromes, oxidative damage to mitochondrial DNA, and
decreased levels of cytosolic heme proteins. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 236
Score = 71.1 bits (175), Expect = 4e-15
Identities = 39/153 (25%), Positives = 70/153 (45%), Gaps = 34/153 (22%)
Query: 18 RRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSA 77
K + + + P G T+VG++G+ LSGG++ R+++ARA+ K + LLD+ SA
Sbjct: 108 IEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSA 167
Query: 78 VDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLIT 137
+D H + + AL V K +T ++I
Sbjct: 168 LDTHTEREIQA------------------------------ALRDV----SKGRTTIVIA 193
Query: 138 HQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASG 170
H++ + + D +++L+ G + GT +LLA G
Sbjct: 194 HRLSTIVNADKIIVLKDGRIVERGTHEELLAKG 226
>gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase
and permease components [General function prediction
only].
Length = 580
Score = 72.3 bits (178), Expect = 5e-15
Identities = 41/136 (30%), Positives = 65/136 (47%), Gaps = 33/136 (24%)
Query: 33 LPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCIT 92
LP G T +G+ G +LSGGQR RI+LARA+Y + +LD+P S +D+
Sbjct: 458 LPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSE----------- 506
Query: 93 GLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLL 152
G A + A+ + + TV++I H+ L VD +++L
Sbjct: 507 ------------------GEA-ALAAAILAAK---ARGGTVVVIAHRPSALASVDKILVL 544
Query: 153 EKGSVEAFGTTTQLLA 168
+ G + AFG ++LA
Sbjct: 545 QDGRIAAFGPREEVLA 560
>gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial
lipid flippase and related proteins, subfamily C. MsbA
is an essential ABC transporter, closely related to
eukaryotic MDR proteins. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 234
Score = 70.3 bits (173), Expect = 7e-15
Identities = 41/145 (28%), Positives = 70/145 (48%), Gaps = 34/145 (23%)
Query: 32 QLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCI 91
+LP G T++G++GV LSGGQR RI++ARA+ K + +LD+ SA+D + L + +
Sbjct: 123 ELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDT-ESERLVQAAL 181
Query: 92 TGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVML 151
L +K +T +I H++ + + D +++
Sbjct: 182 ERL---------------------------------MKNRTTFVIAHRLSTIENADRIVV 208
Query: 152 LEKGSVEAFGTTTQLLASGLDFTQL 176
LE G + GT +LLA G + +L
Sbjct: 209 LEDGKIVERGTHEELLAQGGVYAKL 233
>gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a
mitochondrial protein MTABC3 and related proteins.
MTABC3 (also known as ABCB6) is a mitochondrial
ATP-binding cassette protein involved in iron
homeostasis and one of four ABC transporters expressed
in the mitochondrial inner membrane, the other three
being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast
MDL1 (multidrug resistance-like protein 1) and MDL2
(multidrug resistance-like protein 2) transporters are
also included in this CD. MDL1 is an ATP-dependent
permease that acts as a high-copy suppressor of ATM1 and
is thought to have a role in resistance to oxidative
stress. Interestingly, subfamily B is more closely
related to the carboxyl-terminal component of subfamily
C than the two halves of ABCC molecules are with one
another.
Length = 238
Score = 70.3 bits (173), Expect = 7e-15
Identities = 47/163 (28%), Positives = 71/163 (43%), Gaps = 37/163 (22%)
Query: 11 GHPDPNSRRVVKVCALKE--DF-AQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRAD 67
G PD V + DF LP G TLVG++G LSGGQ+ RI++ARA+ +
Sbjct: 100 GKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPK 159
Query: 68 VYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSF 127
+ LLD+ SA+DA S V+ AL
Sbjct: 160 ILLLDEATSALDAE------------------------------SEKLVQEALDRAM--- 186
Query: 128 LKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASG 170
K +T ++I H++ + + D + +L+ G V GT +L+A
Sbjct: 187 -KGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQK 228
>gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC
transporter, PrtD family. Type I protein secretion is a
system in some Gram-negative bacteria to export proteins
(often proteases) across both inner and outer membranes
to the extracellular medium. This is one of three
proteins of the type I secretion apparatus. Targeted
proteins are not cleaved at the N-terminus, but rather
carry signals located toward the extreme C-terminus to
direct type I secretion [Protein fate, Protein and
peptide secretion and trafficking].
Length = 544
Score = 70.1 bits (172), Expect = 3e-14
Identities = 46/158 (29%), Positives = 75/158 (47%), Gaps = 36/158 (22%)
Query: 14 DPNSRRVV---KVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYL 70
+ + +++ K+ + E +LP G T++G G +LSGGQR RI+LARA+Y + +
Sbjct: 418 NADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVV 477
Query: 71 LDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKE 130
LD+P S +D G+ + I AL RG
Sbjct: 478 LDEPNSNLDE-EGEQALANAIK--------------------ALKARGI----------- 505
Query: 131 KTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLA 168
TV++ITH+ L VD +++L+ G + FG ++LA
Sbjct: 506 -TVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLA 542
>gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein
MsbA. This family consists of a single polypeptide
chain transporter in the ATP-binding cassette (ABC)
transporter family, MsbA, which exports lipid A. It may
also act in multidrug resistance. Lipid A, a part of
lipopolysaccharide, is found in the outer leaflet of the
outer membrane of most Gram-negative bacteria. Members
of this family are restricted to the Proteobacteria
(although lipid A is more broadly distributed) and often
are clustered with lipid A biosynthesis genes [Cell
envelope, Biosynthesis and degradation of surface
polysaccharides and lipopolysaccharides, Transport and
binding proteins, Other].
Length = 571
Score = 69.7 bits (171), Expect = 4e-14
Identities = 40/159 (25%), Positives = 73/159 (45%), Gaps = 34/159 (21%)
Query: 18 RRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSA 77
R + ++ +LP G T +G+ GV LSGGQR R+++ARA+ K A + +LD+ SA
Sbjct: 440 ERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSA 499
Query: 78 VDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLIT 137
+D + V+ AL + ++ +T ++I
Sbjct: 500 LDNESERL------------------------------VQAALERL----MQGRTTLVIA 525
Query: 138 HQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGLDFTQL 176
H++ + D +++++ G + GT +LLA + QL
Sbjct: 526 HRLSTIEKADRIVVMDDGRIVERGTHNELLARNGLYAQL 564
>gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein.
This protein is related to a Proteobacterial ATP
transporter that exports lipid A and to eukaryotic
P-glycoproteins.
Length = 576
Score = 69.0 bits (169), Expect = 9e-14
Identities = 49/163 (30%), Positives = 79/163 (48%), Gaps = 37/163 (22%)
Query: 11 GHPDPNSRRVVKVC--ALKEDF-AQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRAD 67
G PD V A +F + LP G T +G++GV+LSGGQR RI++ARA+ K A
Sbjct: 437 GRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAP 496
Query: 68 VYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSF 127
+ LLD+ SA+DA S V+ AL +
Sbjct: 497 ILLLDEATSALDAE------------------------------SEQLVQQALE----TL 522
Query: 128 LKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASG 170
+K +T ++I H++ + D ++++++G + A GT +L+A G
Sbjct: 523 MKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAELIAKG 565
>gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB
family. Type I protein secretion is a system in some
Gram-negative bacteria to export proteins (often
proteases) across both inner and outer membranes to the
extracellular medium. This is one of three proteins of
the type I secretion apparatus. Targeted proteins are
not cleaved at the N-terminus, but rather carry signals
located toward the extreme C-terminus to direct type I
secretion. This model is related to models TIGR01842 and
TIGR01846, and to bacteriocin ABC transporters that
cleave their substrates during export [Protein fate,
Protein and peptide secretion and trafficking, Cellular
processes, Pathogenesis].
Length = 694
Score = 67.6 bits (166), Expect = 2e-13
Identities = 39/141 (27%), Positives = 64/141 (45%), Gaps = 35/141 (24%)
Query: 29 DFA-QLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLF 87
+F + P G +G++G SLSGGQR ++LARA+ + + LLD+P SA+D
Sbjct: 582 EFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDN------- 634
Query: 88 EDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVD 147
S + L +L KT++L+TH+ L VD
Sbjct: 635 -----------------------RSEERFKDRLK----RWLAGKTLVLVTHRTSLLDLVD 667
Query: 148 HVMLLEKGSVEAFGTTTQLLA 168
+++++ G + A G Q+L
Sbjct: 668 RIIVMDNGRIVADGPKDQVLE 688
>gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of
bacteriocin exporters, subfamily C. Many
non-lantibiotic bacteriocins of lactic acid bacteria are
produced as precursors which have N-terminal leader
peptides that share similarities in amino acid sequence
and contain a conserved processing site of two glycine
residues in positions -1 and -2. A dedicated ATP-binding
cassette (ABC) transporter is responsible for the
proteolytic cleavage of the leader peptides and
subsequent translocation of the bacteriocins across the
cytoplasmic membrane.
Length = 220
Score = 64.5 bits (158), Expect = 6e-13
Identities = 42/154 (27%), Positives = 69/154 (44%), Gaps = 37/154 (24%)
Query: 11 GHPDPNSRRVVKVCALK--EDFAQL-PSGDRTLVGDKGVSLSGGQRARISLARAVYKRAD 67
G P + R+++ L DF P+G +G++G LSGGQR ++LARA+
Sbjct: 101 GAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPP 160
Query: 68 VYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSF 127
+ LLD+P SA+D + + L E L
Sbjct: 161 ILLLDEPTSAMDMNSEERLKE------------------------------RLR----QL 186
Query: 128 LKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFG 161
L +KT+++ITH+ L VD +++++ G + A G
Sbjct: 187 LGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220
>gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin
B, subfamily C. The ABC-transporter hemolysin B is a
central component of the secretion machinery that
translocates the toxin, hemolysin A, in a
Sec-independent fashion across both membranes of E.
coli. The hemolysin A (HlyA) transport machinery is
composed of the ATP-binding cassette (ABC) transporter
HlyB located in the inner membrane, hemolysin D (HlyD),
also anchored in the inner membrane, and TolC, which
resides in the outer membrane. HlyD apparently forms a
continuous channel that bridges the entire periplasm,
interacting with TolC and HlyB. This arrangement
prevents the appearance of periplasmic intermediates of
HlyA during substrate transport. Little is known about
the molecular details of HlyA transport, but it is
evident that ATP-hydrolysis by the ABC-transporter HlyB
is a necessary source of energy.
Length = 237
Score = 64.8 bits (158), Expect = 7e-13
Identities = 42/171 (24%), Positives = 75/171 (43%), Gaps = 37/171 (21%)
Query: 11 GHPDPNSRRVVKVCALK--EDF-AQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRAD 67
P + RV++ L DF ++LP G T+VG++G LSGGQR RI++ARA+
Sbjct: 99 ADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPR 158
Query: 68 VYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSF 127
+ + D+ SA+D + + +H
Sbjct: 159 ILIFDEATSALDYESEHAI----MRNMH------------------------------DI 184
Query: 128 LKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGLDFTQLLD 178
+TV++I H++ + + D ++++EKG + G+ +LLA + L
Sbjct: 185 CAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAENGLYAYLYQ 235
>gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit. The
gene pair cydCD encodes an ABC-family transporter in
which each gene contains an N-terminal membrane-spanning
domain (pfam00664) and a C-terminal ATP-binding domain
(pfam00005). In E. coli these genes were discovered as
mutants which caused the terminal heme-copper oxidase
complex cytochrome bd to fail to assemble. Recent work
has shown that the transporter is involved in export of
redox-active thiol compounds such as cysteine and
glutathione. The linkage to assembly of the cytochrome
bd complex is further supported by the conserved operon
structure found outside the gammaproteobacteria
(cydABCD) containing both the transporter and oxidase
genes components. The genes used as the seed members for
this model are all either found in the
gammproteobacterial context or the CydABCD context. All
members of this family scoring above trusted at the time
of its creation were from genomes which encode a
cytochrome bd complex. Unfortunately, the gene symbol
nomenclature adopted based on this operon in B. subtilis
assigns cydC to the third gene in the operon where this
gene is actually homologous to the E. coli cydD gene. We
have chosen to name all homologs in this family in
accordance with the precedence of publication of the E.
coli name, CydD.
Length = 529
Score = 65.8 bits (161), Expect = 1e-12
Identities = 30/79 (37%), Positives = 42/79 (53%)
Query: 10 PGHPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVY 69
P D R ++ L E A LP G T +G+ G LSGGQ R++LARA + A +
Sbjct: 421 PDASDAEIREALERAGLDEFVAALPQGLDTPIGEGGAGLSGGQAQRLALARAFLRDAPLL 480
Query: 70 LLDDPLSAVDAHVGKHLFE 88
LLD+P + +DA + E
Sbjct: 481 LLDEPTAHLDAETEAEVLE 499
>gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC
transporter, HlyB family. Type I protein secretion is a
system in some Gram-negative bacteria to export proteins
(often proteases) across both inner and outer membranes
to the extracellular medium. This is one of three
proteins of the type I secretion apparatus. Targeted
proteins are not cleaved at the N-terminus, but rather
carry signals located toward the extreme C-terminus to
direct type I secretion [Protein fate, Protein and
peptide secretion and trafficking].
Length = 694
Score = 65.1 bits (159), Expect = 2e-12
Identities = 41/167 (24%), Positives = 72/167 (43%), Gaps = 34/167 (20%)
Query: 10 PGHPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVY 69
PG P + K+ + ++LP G T VG+KG +LSGGQR RI++ARA+ +
Sbjct: 556 PGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRIL 615
Query: 70 LLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLK 129
+ D+ SA+D + + + +
Sbjct: 616 IFDEATSALDYESEALIMRN----MR------------------------------EICR 641
Query: 130 EKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGLDFTQL 176
+TV++I H++ + D +++LEKG + G +LLA + +L
Sbjct: 642 GRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEELLALQGLYARL 688
>gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein;
Provisional.
Length = 582
Score = 62.7 bits (153), Expect = 1e-11
Identities = 40/149 (26%), Positives = 72/149 (48%), Gaps = 35/149 (23%)
Query: 29 DF-AQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLF 87
DF ++ +G T++G+ GV LSGGQR RI++ARA+ + + + +LD+ SA+D
Sbjct: 461 DFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTE------ 514
Query: 88 EDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVD 147
S ++ AL ++ K +T ++I H++ + D
Sbjct: 515 ------------------------SERAIQAALDELQ----KNRTSLVIAHRLSTIEKAD 546
Query: 148 HVMLLEKGSVEAFGTTTQLLASGLDFTQL 176
++++E G + GT +LLA + QL
Sbjct: 547 EILVVEDGEIVERGTHAELLAQNGVYAQL 575
>gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter;
Provisional.
Length = 588
Score = 62.7 bits (153), Expect = 1e-11
Identities = 39/146 (26%), Positives = 69/146 (47%), Gaps = 34/146 (23%)
Query: 34 PSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITG 93
P G T+VG++G LSGG+R R+++ARA+ K + +LD+ SA+D
Sbjct: 458 PDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEATSALDVET----------- 506
Query: 94 LHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLE 153
+++ V+ AL + K +T +I H++ + + D +++ +
Sbjct: 507 --------EAK-----------VKAALDELM----KGRTTFIIAHRLSTVRNADRILVFD 543
Query: 154 KGSVEAFGTTTQLLASGLDFTQLLDA 179
G V G+ +L+A G F LL A
Sbjct: 544 NGRVVESGSFDELVARGGRFAALLRA 569
>gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of
multidrug resistance-associated protein. The ABC
subfamily C is also known as MRP (multidrug
resistance-associated protein). Some of the MRP members
have five additional transmembrane segments in their
N-terminus, but the function of these additional
membrane-spanning domains is not clear. The MRP was
found in the multidrug-resistance lung cancer cell in
which p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions, such as
glutathione, glucuronate, and sulfate.
Length = 221
Score = 61.0 bits (149), Expect = 1e-11
Identities = 35/144 (24%), Positives = 65/144 (45%), Gaps = 34/144 (23%)
Query: 19 RVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAV 78
+ ++ LKE LP G T+V + G +LS GQR + LARA+ +++ + +LD+ ++V
Sbjct: 111 QALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASV 170
Query: 79 DAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITH 138
D + + +R +F K+ TV+ I H
Sbjct: 171 DPETDALIQK---------------------------------TIREAF-KDCTVLTIAH 196
Query: 139 QIQYLTHVDHVMLLEKGSVEAFGT 162
++ + D +++L+KG V F +
Sbjct: 197 RLDTIIDSDRILVLDKGRVVEFDS 220
>gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of
glucan transporter and related proteins, subfamily C.
Glucan exporter ATP-binding protein. In A. tumefaciens
cyclic beta-1, 2-glucan must be transported into the
periplasmic space to exert its action as a virulence
factor. This subfamily belongs to the MRP-like family
and is involved in drug, peptide, and lipid export. The
MRP-like family, similar to all ABC proteins, have a
common four-domain core structure constituted by two
membrane-spanning domains each composed of six
transmembrane (TM) helices and two nucleotide-binding
domains (NBD). ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 229
Score = 60.7 bits (148), Expect = 2e-11
Identities = 36/163 (22%), Positives = 72/163 (44%), Gaps = 37/163 (22%)
Query: 11 GHPDPNSRRVVKVCALK--EDF-AQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRAD 67
G P+ V++ DF +LP+G T++G+ G +LS G+R +++ARA+ +
Sbjct: 100 GRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPK 159
Query: 68 VYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSF 127
+ +LD+ S +D + ++ AL +
Sbjct: 160 ILILDEATSNID-------------------TETEKL-----------IQEALEKLM--- 186
Query: 128 LKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASG 170
K +T ++I H++ + + D +++L+ G + GT +LLA
Sbjct: 187 -KGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAKK 228
>gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the
metal-type transporters. This family includes
transporters involved in the uptake of various metallic
cations such as iron, manganese, and zinc. The ATPases
of this group of transporters are very similar to
members of iron-siderophore uptake family suggesting
that they share a common ancestor. The best
characterized metal-type ABC transporters are the
YfeABCD system of Y. pestis, the SitABCD system of
Salmonella enterica serovar Typhimurium, and the SitABCD
transporter of Shigella flexneri. Moreover other
uncharacterized homologs of these metal-type
transporters are mainly found in pathogens like
Haemophilus or enteroinvasive E. coli isolates.
Length = 213
Score = 59.1 bits (144), Expect = 6e-11
Identities = 29/116 (25%), Positives = 47/116 (40%), Gaps = 35/116 (30%)
Query: 47 SLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWG 106
LSGGQ+ R+ LARA+ + D+ LLD+P + VD
Sbjct: 132 ELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPK------------------------- 166
Query: 107 RSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFG 161
L+R + T++++TH + + + D V+LL + V A G
Sbjct: 167 --------TQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVASG 213
>gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter. This
model describes ABC-type bacteriocin transporter. The
amino terminal domain (pfam03412) processes the
N-terminal leader peptide from the bacteriocin while
C-terminal domains resemble ABC transporter membrane
protein and ATP-binding cassette domain. In general,
bacteriocins are agents which are responsible for
killing or inhibiting the closely related species or
even different strains of the same species. Bacteriocins
are usually encoded by bacterial plasmids. Bacteriocins
are named after the species and hence in literature one
encounters various names e.g., leucocin from Leuconostic
geldium; pedicocin from Pedicoccus acidilactici; sakacin
from Lactobacillus sake etc [Protein fate, Protein and
peptide secretion and trafficking, Protein fate, Protein
modification and repair, Transport and binding proteins,
Other].
Length = 708
Score = 60.5 bits (147), Expect = 8e-11
Identities = 34/161 (21%), Positives = 70/161 (43%), Gaps = 35/161 (21%)
Query: 19 RVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAV 78
++ +K+D +P G +T + ++G S+SGGQ+ RI+LARA+ + V +LD+ S +
Sbjct: 583 AACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNL 642
Query: 79 DAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITH 138
D K + + + L++KT++ + H
Sbjct: 643 DTITEKKIVNNLL-----------------------------------NLQDKTIIFVAH 667
Query: 139 QIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGLDFTQLLDA 179
++ D +++L+ G + G+ +LL + L+
Sbjct: 668 RLSVAKQSDKIIVLDHGKIIEQGSHDELLDRNGFYASLIHN 708
>gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd
biosynthesis, fused ATPase and permease components
[Energy production and conversion / Posttranslational
modification, protein turnover, chaperones].
Length = 573
Score = 59.7 bits (145), Expect = 1e-10
Identities = 38/148 (25%), Positives = 68/148 (45%), Gaps = 38/148 (25%)
Query: 32 QLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCI 91
P G T +G+ G LSGG+R R++LARA+ A ++LLD+P +D I
Sbjct: 459 SAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDP----------I 508
Query: 92 TGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSF--LKEKTVMLITHQIQYLTHVDHV 149
T ++ F + KT++++TH+++ L +D +
Sbjct: 509 T--------------------------ERQVLALLFEHAEGKTLLMVTHRLRGLERMDRI 542
Query: 150 MLLEKGSVEAFGTTTQLLASGLDFTQLL 177
++L+ G + GT +LLA+ + +L
Sbjct: 543 IVLDNGKIIEEGTHAELLANNGRYKRLY 570
>gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein. This model
describes glucan exporter ATP binding protein in
bacteria. It belongs to the larger ABC transporter
superfamily with the characteristic ATP binding motif.
The In general, this protein is in some ways implicated
in osmoregulation and suggested to participate in the
export of glucan from the cytoplasm to periplasm. The
cyclic beta-1,2-glucan in the bactrerial periplasmic
space is suggested to confer the property of high
osmolority. It has also been demonstrated that mutants
in this loci have lost functions of virulence and
motility. It is unclear as to how virulence and
osmoadaptaion are related [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 585
Score = 59.5 bits (144), Expect = 1e-10
Identities = 37/141 (26%), Positives = 66/141 (46%), Gaps = 34/141 (24%)
Query: 39 TLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGV 98
TLVG++G LSGG+R R+++ARA+ K A + +LD+ SA+D
Sbjct: 463 TLVGERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVE----------------- 505
Query: 99 PRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVE 158
+ V+ A+ +R K +T +I H++ + + D V+ L++G +
Sbjct: 506 -------------TEARVKNAIDALR----KNRTTFIIAHRLSTVRNADLVLFLDQGRLI 548
Query: 159 AFGTTTQLLASGLDFTQLLDA 179
G+ +L+ F +LL
Sbjct: 549 EKGSFQELIQKDGRFYKLLRR 569
>gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD,
subfamily C. The CYD subfamily implicated in cytochrome
bd biogenesis. The CydC and CydD proteins are important
for the formation of cytochrome bd terminal oxidase of
E. coli and it has been proposed that they were
necessary for biosynthesis of the cytochrome bd quinol
oxidase and for periplasmic c-type cytochromes. CydCD
were proposed to determine a heterooligomeric complex
important for heme export into the periplasm or to be
involved in the maintenance of the proper redox state of
the periplasmic space. In Bacillus subtilis, the absence
of CydCD does not affect the presence of halo-cytochrome
c in the membrane and this observation suggests that
CydCD proteins are not involved in the export of heme in
this organism.
Length = 178
Score = 57.3 bits (139), Expect = 2e-10
Identities = 33/125 (26%), Positives = 53/125 (42%), Gaps = 34/125 (27%)
Query: 37 DRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHT 96
D TL + G SGG+R R++LAR + + A + LLD+P +D
Sbjct: 88 DTTLRNNLGRRFSGGERQRLALARILLQDAPIVLLDEPTVGLD----------------- 130
Query: 97 GVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGS 156
P + + F LK+KT++ ITH + + H+D ++ LE G
Sbjct: 131 --PITERQLLSLIF---------------EVLKDKTLIWITHHLTGIEHMDKILFLENGK 173
Query: 157 VEAFG 161
+ G
Sbjct: 174 IIMQG 178
>gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component
[Inorganic ion transport and metabolism].
Length = 254
Score = 58.4 bits (142), Expect = 2e-10
Identities = 30/122 (24%), Positives = 54/122 (44%), Gaps = 35/122 (28%)
Query: 47 SLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWG 106
LSGGQ+ R+ LARA+ + D+ LLD+P + VD K +++
Sbjct: 139 ELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYD------------------ 180
Query: 107 RSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYL-THVDHVMLLEKGSVEAFGTTTQ 165
L++ + KTV+++TH + + + D V+ L + + A G +
Sbjct: 181 ---------------LLKELRQEGKTVLMVTHDLGLVMAYFDRVICLNRHLI-ASGPPEE 224
Query: 166 LL 167
+L
Sbjct: 225 VL 226
>gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system,
ATP-binding component PhnT. This ATP-binding component
of an ABC transport system is found in Salmonella and
Burkholderia lineages in the vicinity of enzymes for the
breakdown of 2-aminoethylphosphonate.
Length = 362
Score = 58.9 bits (142), Expect = 2e-10
Identities = 37/120 (30%), Positives = 56/120 (46%), Gaps = 32/120 (26%)
Query: 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGR 107
LSGG + RI++ARA+ DV LLD+PLSA+DA++ ++ E+ I LH +P
Sbjct: 138 LSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREE-IAALHEELP-------- 188
Query: 108 SFFGSALGVRGALSLVRTSFLKEKTVMLITH-QIQYLTHVDHVMLLEKGSVEAFGTTTQL 166
E T++ +TH Q LT D +++ G + A G L
Sbjct: 189 ----------------------ELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQAL 226
>gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter
Associated with Antigen Processing, subfamily C. TAP
(Transporter Associated with Antigen Processing) is
essential for peptide delivery from the cytosol into the
lumen of the endoplasmic reticulum (ER), where these
peptides are loaded on major histocompatibility complex
(MHC) I molecules. Loaded MHC I leave the ER and display
their antigenic cargo on the cell surface to cytotoxic T
cells. Subsequently, virus-infected or malignantly
transformed cells can be eliminated. TAP belongs to the
large family of ATP-binding cassette (ABC) transporters,
which translocate a vast variety of solutes across
membranes.
Length = 226
Score = 57.9 bits (140), Expect = 2e-10
Identities = 35/126 (27%), Positives = 60/126 (47%), Gaps = 34/126 (26%)
Query: 32 QLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCI 91
+L SG T VG+KG LSGGQ+ R+++ARA+ + V +LD+ SA+DA
Sbjct: 135 ELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAE---------- 184
Query: 92 TGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVML 151
S V+ AL + + +TV++I H++ + D +++
Sbjct: 185 --------------------SEQQVQQALY----DWPERRTVLVIAHRLSTVERADQILV 220
Query: 152 LEKGSV 157
L+ G +
Sbjct: 221 LDGGRI 226
>gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter
nucleotide-binding domain. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide-binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 157
Score = 56.1 bits (136), Expect = 3e-10
Identities = 27/109 (24%), Positives = 45/109 (41%), Gaps = 34/109 (31%)
Query: 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGR 107
LSGGQR R++LARA+ D+ LLD+P S +D + + + L
Sbjct: 81 LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPA-SRERLLELLRELA------------ 127
Query: 108 SFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHV-DHVMLLEKG 155
+ +TV+++TH + D V++L+ G
Sbjct: 128 --------------------EEGRTVIIVTHDPELAELAADRVIVLKDG 156
>gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter
membrane/ATP-binding component; Reviewed.
Length = 574
Score = 57.5 bits (140), Expect = 6e-10
Identities = 35/135 (25%), Positives = 59/135 (43%), Gaps = 34/135 (25%)
Query: 42 GDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRF 101
G+ G LSGG++ R+ +ARA+ A + LLD+P +DA + +
Sbjct: 470 GEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQI--------------- 514
Query: 102 DSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFG 161
L L+ + KTV++ITH++ L D + +++ G + G
Sbjct: 515 ------------------LELLAE-HAQNKTVLMITHRLTGLEQFDRICVMDNGQIIEQG 555
Query: 162 TTTQLLASGLDFTQL 176
T +LLA + QL
Sbjct: 556 THQELLAQQGRYYQL 570
>gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 252
Score = 56.5 bits (137), Expect = 7e-10
Identities = 34/135 (25%), Positives = 60/135 (44%), Gaps = 40/135 (29%)
Query: 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGR 107
LSGGQR RI++ARA+ + +LD+P SA+D V +
Sbjct: 142 LSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQI--------------------- 180
Query: 108 SFFGSALGVRGALSLVRTSFLKEK---TVMLITHQIQYLTHV-DHVMLLEKGSVEAFGTT 163
L+L+ LK++ T + I+H + + H+ D + +++ G + G T
Sbjct: 181 ------------LNLLLE--LKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPT 226
Query: 164 TQLLASGL-DFTQLL 177
+LL+ +T+ L
Sbjct: 227 EELLSHPSHPYTREL 241
>gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit. The
gene pair cydCD encodes an ABC-family transporter in
which each gene contains an N-terminal membrane-spanning
domain (pfam00664) and a C-terminal ATP-binding domain
(pfam00005). In E. coli these genes were discovered as
mutants which caused the terminal heme-copper oxidase
complex cytochrome bd to fail to assemble. Recent work
has shown that the transporter is involved in export of
redox-active thiol compounds such as cysteine and
glutathione. The linkage to assembly of the cytochrome
bd complex is further supported by the conserved operon
structure found outside the gammaproteobacteria
(cydABCD) containing both the transporter and oxidase
genes components. The genes used as the seed members for
this model are all either found in the
gammproteobacterial context or the CydABCD context. All
members of this family scoring above trusted at the time
of its creation were from genomes which encode a
cytochrome bd complex.
Length = 530
Score = 57.0 bits (138), Expect = 9e-10
Identities = 27/64 (42%), Positives = 38/64 (59%)
Query: 26 LKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKH 85
L + LP G T++G+ G LSGG+R R++LARA+ A + LLD+P +DA
Sbjct: 450 LADWLRALPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAETADE 509
Query: 86 LFED 89
L ED
Sbjct: 510 LLED 513
>gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of
the sulfate transporter. Part of the ABC transporter
complex cysAWTP involved in sulfate import. Responsible
for energy coupling to the transport system. The complex
is composed of two ATP-binding proteins (cysA), two
transmembrane proteins (cysT and cysW), and a
solute-binding protein (cysP). ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 239
Score = 55.8 bits (135), Expect = 1e-09
Identities = 39/120 (32%), Positives = 53/120 (44%), Gaps = 33/120 (27%)
Query: 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGR 107
LSGGQR R++LARA+ V LLD+P A+DA V K L RW R
Sbjct: 137 LSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKEL----------------RRWLR 180
Query: 108 SFFGSALGVRGALSLVRTSFLKEKTVMLITH-QIQYLTHVDHVMLLEKGSVEAFGTTTQL 166
L V T + +TH Q + L D V+++ KG +E GT ++
Sbjct: 181 RLH-DELHV---------------TTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEV 224
>gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase
component [Inorganic ion transport and metabolism].
Length = 345
Score = 56.2 bits (136), Expect = 1e-09
Identities = 39/116 (33%), Positives = 51/116 (43%), Gaps = 33/116 (28%)
Query: 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGR 107
LSGGQR R++LARA+ V LLD+P A+DA V K L RW R
Sbjct: 138 LSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKEL----------------RRWLR 181
Query: 108 SFFGSALGVRGALSLVRTSFLKEKTVMLITH-QIQYLTHVDHVMLLEKGSVEAFGT 162
LGV T + +TH Q + L D V++L +G +E G
Sbjct: 182 KLH-DRLGV---------------TTVFVTHDQEEALELADRVVVLNQGRIEQVGP 221
>gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional.
Length = 1466
Score = 56.6 bits (136), Expect = 2e-09
Identities = 44/156 (28%), Positives = 70/156 (44%), Gaps = 37/156 (23%)
Query: 18 RRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSA 77
+R K A+ E LP+ T VG G SLSGGQ+ RI++ARA+ + + LLD+ S+
Sbjct: 1329 KRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSS 1388
Query: 78 VDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLIT 137
+D++ K L E I + +KT++ I
Sbjct: 1389 LDSNSEK-LIEKTIVDIKDKA-------------------------------DKTIITIA 1416
Query: 138 HQIQYLTHVDHVMLLEK----GS-VEAFGTTTQLLA 168
H+I + D +++ GS V+A GT +LL+
Sbjct: 1417 HRIASIKRSDKIVVFNNPDRTGSFVQAHGTHEELLS 1452
Score = 49.6 bits (118), Expect = 3e-07
Identities = 24/55 (43%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 26 LKEDF-AQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVD 79
L DF + LP TLVG LSGGQ+ RIS+ARA+ + + +LD+ S++D
Sbjct: 557 LIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLD 611
>gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter,
ATP-binding protein. This ABC transporter ATP-binding
protein is found in a number of genomes in operon-like
contexts strongly suggesting a substrate specificity for
2-aminoethylphosphonate (2-AEP). The characterized
PhnSTUV system is absent in the genomes in which this
system is found. These genomes encode systems for the
catabolism of 2-AEP, making the need for a
2-AEP-specific transporter likely [Transport and binding
proteins, Amino acids, peptides and amines].
Length = 353
Score = 55.8 bits (135), Expect = 2e-09
Identities = 36/120 (30%), Positives = 56/120 (46%), Gaps = 33/120 (27%)
Query: 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGR 107
LSGGQ+ R++LARA+ + LLD+PLSA+DA V +HL R
Sbjct: 135 LSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHL-----------------RTEI 177
Query: 108 SFFGSALGVRGALSLVRTSFLKEKTVMLITH-QIQYLTHVDHVMLLEKGSVEAFGTTTQL 166
LGV T +++TH Q + L+ D ++++ G +E GT ++
Sbjct: 178 RQLQRRLGV---------------TTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEI 222
>gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase
component [Defense mechanisms].
Length = 293
Score = 55.4 bits (134), Expect = 2e-09
Identities = 31/156 (19%), Positives = 56/156 (35%), Gaps = 33/156 (21%)
Query: 42 GDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRF 101
K +LSGG + R+S+A A+ ++ +LD+P S +D + + + L
Sbjct: 131 NKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPE-SRREIWELLREL------- 182
Query: 102 DSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHV-DHVMLLEKGSVEAF 160
+ T++L TH ++ + D V++L G + A
Sbjct: 183 ------------------------AKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAE 218
Query: 161 GTTTQLLASGLDFTQLLDAPEEEDKAENEVDDNASG 196
GT +L + PE + AE
Sbjct: 219 GTPEELKEKFGGKGVIELEPERLELAELLEGLKLVK 254
>gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport
systems, ATPase components [Inorganic ion transport and
metabolism / Coenzyme metabolism].
Length = 258
Score = 55.3 bits (134), Expect = 2e-09
Identities = 32/123 (26%), Positives = 54/123 (43%), Gaps = 35/123 (28%)
Query: 47 SLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWG 106
LSGG+R R+ +ARA+ + + LLD+P S +D
Sbjct: 138 ELSGGERQRVLIARALAQETPILLLDEPTSHLD--------------------------- 170
Query: 107 RSFFGSALGVRGALSLVRT-SFLKEKTVMLITHQIQY-LTHVDHVMLLEKGSVEAFGTTT 164
+ V L L+R + K TV+++ H + + DH++LL+ G + A GT
Sbjct: 171 ---IAHQIEV---LELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPE 224
Query: 165 QLL 167
++L
Sbjct: 225 EVL 227
>gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the
carbohydrate and solute transporters-like. This family
is comprised of proteins involved in the transport of
apparently unrelated solutes and proteins specific for
di- and oligosaccharides and polyols. ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds, like sugars,
ions, peptides and more complex organic molecules. The
nucleotide-binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 213
Score = 54.1 bits (131), Expect = 4e-09
Identities = 30/115 (26%), Positives = 50/115 (43%), Gaps = 33/115 (28%)
Query: 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGR 107
LSGGQ+ R++LARA+ + + LLD+PLSA+DA + + L
Sbjct: 131 LSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREEL--------------------- 169
Query: 108 SFFGSALGVRGALSLVRTSFLKEKTVMLITH-QIQYLTHVDHVMLLEKGSVEAFG 161
R L ++ T + +TH Q + L D + ++ +G + G
Sbjct: 170 ---------REELKELQREL--GITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213
>gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette
domain of the phosphate transport system. Phosphate
uptake is of fundamental importance in the cell
physiology of bacteria because phosphate is required as
a nutrient. The Pst system of E. coli comprises four
distinct subunits encoded by the pstS, pstA, pstB, and
pstC genes. The PstS protein is a phosphate-binding
protein located in the periplasmic space. PstA and PstC
are hydrophobic and they form the transmembrane portion
of the Pst system. PstB is the catalytic subunit, which
couples the energy of ATP hydrolysis to the import of
phosphate across cellular membranes through the Pst
system, often referred as ABC-protein. PstB belongs to
one of the largest superfamilies of proteins
characterized by a highly conserved adenosine
triphosphate (ATP) binding cassette (ABC), which is also
a nucleotide binding domain (NBD).
Length = 227
Score = 53.7 bits (130), Expect = 5e-09
Identities = 37/129 (28%), Positives = 54/129 (41%), Gaps = 37/129 (28%)
Query: 41 VGDK--GVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGV 98
V D+ + LSGGQ+ R+ LARA+ +V LLD+P SA+D + E+ I L
Sbjct: 133 VKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDP-ISTAKIEELIAELK--- 188
Query: 99 PRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHV-DHVMLLEKGSV 157
KE T++++TH +Q V D L G +
Sbjct: 189 ------------------------------KEYTIVIVTHNMQQAARVADRTAFLLNGRL 218
Query: 158 EAFGTTTQL 166
FG T Q+
Sbjct: 219 VEFGPTEQI 227
>gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport
system, ATPase component [Inorganic ion transport and
metabolism].
Length = 248
Score = 54.1 bits (131), Expect = 6e-09
Identities = 31/111 (27%), Positives = 47/111 (42%), Gaps = 37/111 (33%)
Query: 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGR 107
LSGG R R+++ARA+ R + LLD+P A+DA + L ++
Sbjct: 131 LSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDE------------------ 172
Query: 108 SFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQ---YLTHVDHVMLLEKG 155
L+R KTV+L+TH + YL D V++L
Sbjct: 173 --------------LLRLWEETRKTVLLVTHDVDEAVYLA--DRVVVLSNR 207
>gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster
assembly, permease and ATPase components
[Posttranslational modification, protein turnover,
chaperones].
Length = 497
Score = 54.7 bits (132), Expect = 7e-09
Identities = 36/152 (23%), Positives = 68/152 (44%), Gaps = 34/152 (22%)
Query: 19 RVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAV 78
+ + + LP G T VG++G+ LSGG++ R+++AR + K + +LD+ SA+
Sbjct: 371 AAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEATSAL 430
Query: 79 DAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITH 138
D H + + + AL V +T ++I H
Sbjct: 431 DTHTEQAI------------------------------QAALREVS----AGRTTLVIAH 456
Query: 139 QIQYLTHVDHVMLLEKGSVEAFGTTTQLLASG 170
++ + D +++L+ G + GT +LLA+G
Sbjct: 457 RLSTIIDADEIIVLDNGRIVERGTHEELLAAG 488
>gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems,
ATPase components [Amino acid transport and metabolism].
Length = 352
Score = 53.8 bits (130), Expect = 1e-08
Identities = 20/39 (51%), Positives = 29/39 (74%)
Query: 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHL 86
LSGGQ+ R++LARA+ V LLD+PLSA+DA + + +
Sbjct: 137 LSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQM 175
>gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose
transporter, MalK. ATP binding cassette (ABC) proteins
function from bacteria to human, mediating the
translocation of substances into and out of cells or
organelles. ABC transporters contain two
transmembrane-spanning domains (TMDs) or subunits and
two nucleotide binding domains (NBDs) or subunits that
couple transport to the hydrolysis of ATP. In the
maltose transport system, the periplasmic maltose
binding protein (MBP) stimulates the ATPase activity of
the membrane-associated transporter, which consists of
two transmembrane subunits, MalF and MalG, and two
copies of the ATP binding subunit, MalK, and becomes
tightly bound to the transporter in the catalytic
transition state, ensuring that maltose is passed to the
transporter as ATP is hydrolyzed.
Length = 213
Score = 52.6 bits (127), Expect = 1e-08
Identities = 18/35 (51%), Positives = 27/35 (77%)
Query: 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHV 82
LSGGQR R++L RA+ + V+L+D+PLS +DA +
Sbjct: 131 LSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKL 165
>gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components
[Carbohydrate transport and metabolism].
Length = 338
Score = 53.4 bits (129), Expect = 1e-08
Identities = 34/126 (26%), Positives = 56/126 (44%), Gaps = 35/126 (27%)
Query: 44 KGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDS 103
K + LSGGQR R++LARA+ ++ V+LLD+PLS +DA
Sbjct: 130 KPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAK---------------------L 168
Query: 104 RWG-RSFFGSALGVRGALSLVRTSFLKEKTVMLITH-QIQYLTHVDHVMLLEKGSVEAFG 161
R RS G ++ +TH Q++ +T D ++++ G ++ G
Sbjct: 169 RVLMRSEIKKLHERLGTTTIY------------VTHDQVEAMTLADRIVVMNDGRIQQVG 216
Query: 162 TTTQLL 167
T +L
Sbjct: 217 TPLELY 222
>gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase
component [Amino acid transport and metabolism].
Length = 256
Score = 52.8 bits (127), Expect = 2e-08
Identities = 31/122 (25%), Positives = 54/122 (44%), Gaps = 34/122 (27%)
Query: 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGR 107
LSGGQ+ R+++ARA+ +V L D+P SA+D +
Sbjct: 153 LSGGQQQRVAIARALAMEPEVMLFDEPTSALDPEL------------------------- 187
Query: 108 SFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHV-DHVMLLEKGSVEAFGTTTQL 166
G L V L+ + +T++++TH++ + V HV+ L +G +E G Q+
Sbjct: 188 --VGEVLKVMQDLA------EEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEEEGPPEQV 239
Query: 167 LA 168
Sbjct: 240 FG 241
>gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter. ABC transporters for a large
family of proteins responsible for translocation of a
variety of compounds across biological membranes. ABC
transporters are the largest family of proteins in many
completely sequenced bacteria. ABC transporters are
composed of two copies of this domain and two copies of
a transmembrane domain pfam00664. These four domains may
belong to a single polypeptide as in human CFTR, or
belong in different polypeptide chains.
Length = 119
Score = 49.2 bits (118), Expect = 5e-08
Identities = 14/30 (46%), Positives = 24/30 (80%)
Query: 47 SLSGGQRARISLARAVYKRADVYLLDDPLS 76
+LSGGQ+ R+++ARA+ K+ + LLD+P +
Sbjct: 90 TLSGGQKQRVAIARALLKKPKLLLLDEPTA 119
>gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter
subunit; Provisional.
Length = 257
Score = 51.1 bits (122), Expect = 7e-08
Identities = 34/125 (27%), Positives = 57/125 (45%), Gaps = 34/125 (27%)
Query: 46 VSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRW 105
V LSGGQ+ R+S+ARA+ +V L D+P SA+D +
Sbjct: 151 VHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPEL----------------------- 187
Query: 106 GRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHV-DHVMLLEKGSVEAFGTTT 164
V L +++ + KT++++TH++ + HV HV+ L +G +E G
Sbjct: 188 ----------VGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPE 237
Query: 165 QLLAS 169
QL +
Sbjct: 238 QLFGN 242
>gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of
iron-siderophores, vitamin B12 and hemin transporters
and related proteins. ABC transporters, involved in the
uptake of siderophores, heme, and vitamin B12, are
widely conserved in bacteria and archaea. Only very few
species lack representatives of the siderophore family
transporters. The E. coli BtuCD protein is an ABC
transporter mediating vitamin B12 uptake. The two
ATP-binding cassettes (BtuD) are in close contact with
each other, as are the two membrane-spanning subunits
(BtuC); this arrangement is distinct from that observed
for the E. coli lipid flippase MsbA. The BtuC subunits
provide 20 transmembrane helices grouped around a
translocation pathway that is closed to the cytoplasm by
a gate region, whereas the dimer arrangement of the BtuD
subunits resembles the ATP-bound form of the Rad50 DNA
repair enzyme. A prominent cytoplasmic loop of BtuC
forms the contact region with the ATP-binding cassette
and represent a conserved motif among the ABC
transporters.
Length = 180
Score = 50.1 bits (121), Expect = 7e-08
Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 35/117 (29%)
Query: 47 SLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWG 106
LSGG+R R+ LARA+ + + LLD+P S +D
Sbjct: 97 ELSGGERQRVLLARALAQEPPILLLDEPTSHLD--------------------------- 129
Query: 107 RSFFGSALGVRGALSLVRT-SFLKEKTVMLITHQI-QYLTHVDHVMLLEKGSVEAFG 161
+ + L L+R + + KTV+++ H + + D V+LL+ G + A G
Sbjct: 130 ---IAHQIEL---LELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180
>gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of
PrtD, subfamily C. This family represents the ABC
component of the protease secretion system PrtD, a
60-kDa integral membrane protein sharing 37% identity
with HlyB, the ABC component of the alpha-hemolysin
secretion pathway, in the C-terminal domain. They export
degradative enzymes by using a type I protein secretion
system and lack an N-terminal signal peptide, but
contain a C-terminal secretion signal. The Type I
secretion apparatus is made up of three components, an
ABC transporter, a membrane fusion protein (MFP), and an
outer membrane protein (OMP). For the HlyA transporter
complex, HlyB (ABC transporter) and HlyD (MFP) reside in
the inner membrane of E. coli. The OMP component is
TolC, which is thought to interact with the MFP to form
a continuous channel across the periplasm from the
cytoplasm to the exterior. HlyB belongs to the family of
ABC transporters, which are ubiquitous, ATP-dependent
transmembrane pumps or channels. The spectrum of
transport substrates ranges from inorganic ions,
nutrients such as amino acids, sugars, or peptides,
hydrophobic drugs, to large polypeptides, such as HlyA.
Length = 173
Score = 49.5 bits (119), Expect = 9e-08
Identities = 32/110 (29%), Positives = 47/110 (42%), Gaps = 33/110 (30%)
Query: 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGR 107
LSGGQR R+ LARA+Y + +LD+P S +D G+ I
Sbjct: 97 LSGGQRQRLGLARALYGNPRILVLDEPNSHLD-VEGERALNQAI---------------- 139
Query: 108 SFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSV 157
+AL GA T ++I H+ + L D +++LE G V
Sbjct: 140 ----AALKAAGA------------TRIVIAHRPETLASADRILVLEDGRV 173
>gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine
transporter. PotA is an ABC-type transporter and the
ATPase component of the
spermidine/putrescine-preferential uptake system
consisting of PotA, -B, -C, and -D. PotA has two domains
with the N-terminal domain containing the ATPase
activity and the residues required for homodimerization
with PotA and heterdimerization with PotB. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 232
Score = 50.3 bits (121), Expect = 1e-07
Identities = 32/116 (27%), Positives = 52/116 (44%), Gaps = 33/116 (28%)
Query: 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGR 107
LSGGQ+ R+++ARA+ V LLD+PL A+D + K + + + L
Sbjct: 131 LSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLE-LKRLQK----------- 178
Query: 108 SFFGSALGVRGALSLVRTSFLKEKTVMLITH-QIQYLTHVDHVMLLEKGSVEAFGT 162
LG+ T + +TH Q + LT D + ++ KG ++ GT
Sbjct: 179 -----ELGI---------------TFVFVTHDQEEALTMSDRIAVMNKGKIQQIGT 214
>gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding
protein-dependent transport systems. This class is
comprised of all BPD (Binding Protein Dependent) systems
that are largely represented in archaea and eubacteria
and are primarily involved in scavenging solutes from
the environment. ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides, and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 178
Score = 49.5 bits (119), Expect = 1e-07
Identities = 30/110 (27%), Positives = 48/110 (43%), Gaps = 35/110 (31%)
Query: 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGR 107
LSGGQ+ R++LARA+ DV LLD+P SA+D
Sbjct: 101 LSGGQQQRVALARALAMDPDVLLLDEPTSALD---------------------------- 132
Query: 108 SFFGSALGVRGALSLVRTSFLK-EKTVMLITHQIQYLTHV-DHVMLLEKG 155
+ R +L+++ + TV+L+TH + + D V++L G
Sbjct: 133 -----PITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDG 177
>gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC
transporter, ATP-binding protein. Members of this
protein family are ABC transporter ATP-binding subunits,
part of a three-gene putative bacteriocin transport
operon. The other subunits include another ATP-binding
subunit (TIGR03796), which has an N-terminal leader
sequence cleavage domain, and an HlyD homolog
(TIGR03794). In a number of genomes, members of protein
families related to nitrile hydratase alpha subunit or
to nif11 have undergone paralogous family expansions,
with members possessing a putative bacteriocin cleavage
region ending with a classic Gly-Gly motif. Those sets
of putative bacteriocins, members of this protein family
and its partners TIGR03794 and TIGR03796, and
cyclodehydratase/docking scaffold fusion proteins of
thiazole/oxazole biosynthesis frequently show correlated
species distribution and co-clustering within many of
those genomes [Transport and binding proteins, Amino
acids, peptides and amines, Cellular processes,
Biosynthesis of natural products].
Length = 686
Score = 50.7 bits (122), Expect = 1e-07
Identities = 41/161 (25%), Positives = 68/161 (42%), Gaps = 44/161 (27%)
Query: 20 VVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVD 79
++ L ED +P G T++ + G +LSGGQR R+ +ARA+ ++ + L D+ SA+D
Sbjct: 561 AARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALD 620
Query: 80 ----AHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVML 135
A V + L L V T ++
Sbjct: 621 NRTQAIVSESL-------------------------ERLKV---------------TRIV 640
Query: 136 ITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGLDFTQL 176
I H++ + + D + +L+ G V GT +L+A F QL
Sbjct: 641 IAHRLSTIRNADRIYVLDAGRVVQQGTYDELMAREGLFAQL 681
>gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems,
ATPase components [Amino acid transport and metabolism].
Length = 309
Score = 50.0 bits (120), Expect = 2e-07
Identities = 29/123 (23%), Positives = 52/123 (42%), Gaps = 33/123 (26%)
Query: 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGR 107
LSGGQ+ R+ +ARA+ + L+D+P A+D K L E+ I L +
Sbjct: 136 LSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEE-IKELQKEL--------- 185
Query: 108 SFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHV-DHVMLLEKGSVEAFGTTTQL 166
KT++ +TH I + D + +++ G + + T ++
Sbjct: 186 ----------------------GKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEI 223
Query: 167 LAS 169
LA+
Sbjct: 224 LAN 226
>gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of
the osmoprotectant transporter. OpuCA is a the ATP
binding component of a bacterial solute transporter that
serves a protective role to cells growing in a
hyperosmolar environment. ABC (ATP-binding cassette)
transporter nucleotide-binding domain; ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds, like sugars,
ions, peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition, to the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 242
Score = 49.6 bits (119), Expect = 2e-07
Identities = 30/123 (24%), Positives = 50/123 (40%), Gaps = 33/123 (26%)
Query: 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGR 107
LSGGQ+ R+ +ARA+ + L+D+P A+D L E+ L
Sbjct: 136 LSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKR-LQ------------ 182
Query: 108 SFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHV-DHVMLLEKGSVEAFGTTTQL 166
LG KT++ +TH I + D + +++ G + GT ++
Sbjct: 183 ----QELG---------------KTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEI 223
Query: 167 LAS 169
L S
Sbjct: 224 LRS 226
>gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase
protein; Reviewed.
Length = 375
Score = 49.6 bits (119), Expect = 2e-07
Identities = 18/32 (56%), Positives = 25/32 (78%)
Query: 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVD 79
LSGGQ+ R+++ARAV + V LLD+ LSA+D
Sbjct: 145 LSGGQQQRVAIARAVVNKPKVLLLDESLSALD 176
>gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein.
[Transport and binding proteins, Anions].
Length = 237
Score = 49.0 bits (117), Expect = 3e-07
Identities = 33/123 (26%), Positives = 52/123 (42%), Gaps = 39/123 (31%)
Query: 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGR 107
LSGGQR R++LARA+ V LLD+P A+DA V K L W R
Sbjct: 131 LSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKEL----------------RSWLR 174
Query: 108 SFFGSALGVRGALSLVRTSFLKEK---TVMLITH-QIQYLTHVDHVMLLEKGSVEAFGTT 163
L ++ T + +TH Q + + D ++++ G +E G+
Sbjct: 175 K-------------------LHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSP 215
Query: 164 TQL 166
++
Sbjct: 216 DEV 218
>gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding
subunit. This model describes spermidine/putrescine ABC
transporter, ATP binding subunit in bacteria and its
equivalents in archaea. This transport system belong to
the larger ATP-Binding Cassette (ABC) transporter
superfamily. The characteristic feature of these
transporter is the obligatory coupling of ATP hydrolysis
to substrate translocation. The minimal configuration of
bacterial ABC transport system: an ATPase or ATP binding
subunit; An integral membrane protein; a hydrophilic
polypetpide, which likely functions as substrate binding
protein. Polyamines like spermidine and putrescine play
vital role in cell proliferation, differentiation, and
ion homeostasis. The concentration of polyamines within
the cell are regulated by biosynthesis, degradation and
transport (uptake and efflux included) [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 325
Score = 49.4 bits (118), Expect = 3e-07
Identities = 18/32 (56%), Positives = 26/32 (81%)
Query: 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVD 79
LSGGQ+ R++LARA+ + + LLD+PLSA+D
Sbjct: 101 LSGGQQQRVALARALVFKPKILLLDEPLSALD 132
>gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding
protein. This model represents the ATP-binding protein
of a family of ABC transporters for inorganic phosphate.
In the model species Escherichia coli, a constitutive
transporter for inorganic phosphate, with low affinity,
is also present. The high affinity transporter that
includes this polypeptide is induced when extracellular
phosphate concentrations are low. The proteins most
similar to the members of this family but not included
appear to be amino acid transporters [Transport and
binding proteins, Anions].
Length = 247
Score = 49.2 bits (118), Expect = 3e-07
Identities = 32/126 (25%), Positives = 52/126 (41%), Gaps = 37/126 (29%)
Query: 43 DKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFD 102
D + LSGGQ+ R+ +ARA+ +V LLD+P SA+D + E+ I
Sbjct: 140 DSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDP-IATGKIEELIQE--------- 189
Query: 103 SRWGRSFFGSALGVRGALSLVRTSFLKEK-TVMLITHQIQYLTHV-DHVMLLEKGSVEAF 160
LK+K T++++TH +Q + D G + +
Sbjct: 190 -------------------------LKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEY 224
Query: 161 GTTTQL 166
G T Q+
Sbjct: 225 GPTEQI 230
>gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 274
Score = 48.9 bits (116), Expect = 5e-07
Identities = 21/49 (42%), Positives = 34/49 (69%)
Query: 43 DKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCI 91
+KG +LSGGQ+ R+ +ARA+ + DV L+D+P SA+D + + E C+
Sbjct: 157 EKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCL 205
>gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the
drug resistance transporter and related proteins,
subfamily A. This family of ATP-binding proteins
belongs to a multi-subunit transporter involved in drug
resistance (BcrA and DrrA), nodulation, lipid transport,
and lantibiotic immunity. In bacteria and archaea, these
transporters usually include an ATP-binding protein and
one or two integral membrane proteins. Eukaryotic
systems of the ABCA subfamily display ABC domains that
are quite similar to this family. The ATP-binding domain
shows the highest similarity between all members of the
ABC transporter family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 173
Score = 47.4 bits (114), Expect = 5e-07
Identities = 23/113 (20%), Positives = 47/113 (41%), Gaps = 34/113 (30%)
Query: 46 VSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRW 105
+ LSGG + R++LA+A+ ++ +LD+P S +D + F + +
Sbjct: 94 LKLSGGMKQRLALAQALLHDPELLILDEPTSGLDP-ESRREFWELL-------------- 138
Query: 106 GRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHV-DHVMLLEKGSV 157
L + + KT++L +H ++ + D V +L G +
Sbjct: 139 --------------RELKK----EGKTILLSSHILEEAERLCDRVAILNNGRI 173
>gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein;
Provisional.
Length = 260
Score = 47.7 bits (114), Expect = 8e-07
Identities = 22/43 (51%), Positives = 29/43 (67%), Gaps = 4/43 (9%)
Query: 41 VGDK----GVSLSGGQRARISLARAVYKRADVYLLDDPLSAVD 79
V DK G SLSGGQ+ R+ +AR + R +V LLD+P SA+D
Sbjct: 146 VKDKLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALD 188
>gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 279
Score = 47.8 bits (114), Expect = 8e-07
Identities = 37/138 (26%), Positives = 60/138 (43%), Gaps = 41/138 (29%)
Query: 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGR 107
LSGGQ+ R+++A AV R + +LD+ S +D
Sbjct: 141 LSGGQKQRVAIAGAVAMRPKIIILDEATSMLDP--------------------------- 173
Query: 108 SFFGSALGVRGALSLVRT-SFLKEK---TVMLITHQIQYLTHVDHVMLLEKGSVEAFGTT 163
G L L++T +++ TV+ ITH + + D V++++ G VE+ T
Sbjct: 174 ---------EGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTP 224
Query: 164 TQLLASGLDFTQL-LDAP 180
+L + G D QL LD P
Sbjct: 225 RELFSRGNDLLQLGLDIP 242
>gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette
domain of the molybdenum transport system. ModC is an
ABC-type transporter and the ATPase component of a
molybdate transport system that also includes the
periplasmic binding protein ModA and the membrane
protein ModB. ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 214
Score = 47.3 bits (113), Expect = 9e-07
Identities = 16/35 (45%), Positives = 27/35 (77%)
Query: 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHV 82
LSGG++ R++LARA+ + ++ LLD+P SA+D +
Sbjct: 132 LSGGEKQRVALARALAAQPELLLLDEPFSALDRAL 166
>gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 261
Score = 47.7 bits (113), Expect = 9e-07
Identities = 33/139 (23%), Positives = 52/139 (37%), Gaps = 35/139 (25%)
Query: 45 GVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSR 104
G+SLSGGQ+ R+ +ARA+ +V LLD+P SA+D + + E
Sbjct: 147 GLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEE---------------- 190
Query: 105 WGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTT 164
+ K+ T+ L+TH +Q V + T
Sbjct: 191 ------------------LMVELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTG 232
Query: 165 QLLASGLDFTQLLDAPEEE 183
L+ G Q+ P E+
Sbjct: 233 YLVEMG-PTAQIFQNPREQ 250
>gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 339
Score = 48.0 bits (115), Expect = 1e-06
Identities = 29/122 (23%), Positives = 57/122 (46%), Gaps = 33/122 (27%)
Query: 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGR 107
LSGGQ+ R+++ARA+ + L D+ SA+D + + E + ++
Sbjct: 142 LSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILE-LLKDIN------------ 188
Query: 108 SFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHV-DHVMLLEKGSVEAFGTTTQL 166
LG+ T++LITH+++ + + D V +L++G + GT +++
Sbjct: 189 ----RELGL---------------TIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEV 229
Query: 167 LA 168
A
Sbjct: 230 FA 231
>gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of
the nitrate and sulfonate transporters. NrtD and SsuB
are the ATP-binding subunits of the bacterial ABC-type
nitrate and sulfonate transport systems, respectively.
ABC transporters are a large family of proteins involved
in the transport of a wide variety of different
compounds, like sugars, ions, peptides, and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 220
Score = 47.1 bits (113), Expect = 1e-06
Identities = 20/34 (58%), Positives = 25/34 (73%)
Query: 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVDAH 81
LSGG R R++LARA+ DV LLD+P SA+DA
Sbjct: 132 LSGGMRQRVALARALAVDPDVLLLDEPFSALDAL 165
>gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to
organic solvents, ATPase component [Secondary
metabolites biosynthesis, transport, and catabolism].
Length = 263
Score = 47.2 bits (113), Expect = 1e-06
Identities = 38/123 (30%), Positives = 57/123 (46%), Gaps = 33/123 (26%)
Query: 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGR 107
LSGG R R++LARA+ ++ LD+P S +D + + ++ I L+
Sbjct: 146 LSGGMRKRVALARAIALDPELLFLDEPTSGLDP-ISAGVIDELIRELN------------ 192
Query: 108 SFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYL-THVDHVMLLEKGSVEAFGTTTQL 166
ALG+ TV+++TH + L T D V +L G V A GT +L
Sbjct: 193 ----DALGL---------------TVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEEL 233
Query: 167 LAS 169
LAS
Sbjct: 234 LAS 236
>gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 253
Score = 47.1 bits (113), Expect = 1e-06
Identities = 31/125 (24%), Positives = 53/125 (42%), Gaps = 35/125 (28%)
Query: 43 DKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFD 102
+ LSGGQ+ R+ +ARA+ + +V L+D+P SA+D + E+ IT L
Sbjct: 145 KSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDP-ISTLKIEELITELK------- 196
Query: 103 SRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHV-DHVMLLEKGSVEAFG 161
K+ T++++TH +Q V D+ G + FG
Sbjct: 197 --------------------------KKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFG 230
Query: 162 TTTQL 166
T ++
Sbjct: 231 PTDKI 235
>gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding
cassette component of cobalt transport system. Domain I
of the ABC component of a cobalt transport family found
in bacteria, archaea, and eukaryota. The transition
metal cobalt is an essential component of many enzymes
and must be transported into cells in appropriate
amounts when needed. This ABC transport system of the
CbiMNQO family is involved in cobalt transport in
association with the cobalamin (vitamin B12)
biosynthetic pathways. Most of cobalt (Cbi) transport
systems possess a separate CbiN component, the
cobalt-binding periplasmic protein, and they are encoded
by the conserved gene cluster cbiMNQO. Both the CbiM and
CbiQ proteins are integral cytoplasmic membrane
proteins, and the CbiO protein has the linker peptide
and the Walker A and B motifs commonly found in the
ATPase components of the ABC-type transport systems.
Length = 211
Score = 46.3 bits (111), Expect = 2e-06
Identities = 26/110 (23%), Positives = 47/110 (42%), Gaps = 34/110 (30%)
Query: 47 SLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWG 106
+LSGGQ+ R+++A + D+ LLD+P + +D + L E
Sbjct: 134 TLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLE------------------ 175
Query: 107 RSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYL-THVDHVMLLEKG 155
L++ + KT++++TH + L D V++LE G
Sbjct: 176 ---------------LLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDG 210
>gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport
system involved in resistant to organic solvents. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 235
Score = 46.3 bits (111), Expect = 2e-06
Identities = 30/123 (24%), Positives = 52/123 (42%), Gaps = 33/123 (26%)
Query: 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGR 107
LSGG + R++LARA+ ++ L D+P + +D + + +D I L
Sbjct: 137 LSGGMKKRVALARALALDPELLLYDEPTAGLDP-IASGVIDDLIRSLK------------ 183
Query: 108 SFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHV-DHVMLLEKGSVEAFGTTTQL 166
LG+ T +++TH + + D + +L G + A GT +L
Sbjct: 184 ----KELGL---------------TSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEEL 224
Query: 167 LAS 169
AS
Sbjct: 225 RAS 227
>gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC
transporter, peptidase/ATP-binding protein. This
protein describes a multidomain ABC transporter subunit
that is one of three protein families associated with
some regularity with a distinctive family of putative
bacteriocins. It includes a bacteriocin-processing
peptidase domain at the N-terminus. Model TIGR03793
describes a conserved propeptide region for this
bacteriocin family, unusual because it shows obvious
homology a region of the enzyme nitrile hydratase up to
the classic Gly-Gly cleavage motif. This family is
therefore predicted to be a subunit of a bacteriocin
processing and export system characteristic to this
system that we designate NHLM, Nitrile Hydratase Leader
Microcin [Transport and binding proteins, Amino acids,
peptides and amines, Cellular processes, Biosynthesis of
natural products].
Length = 710
Score = 46.5 bits (111), Expect = 3e-06
Identities = 24/72 (33%), Positives = 38/72 (52%)
Query: 13 PDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLD 72
PD + R K A+ + P G + + G +LSGGQR R+ +ARA+ + + +LD
Sbjct: 581 PDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILD 640
Query: 73 DPLSAVDAHVGK 84
+ SA+D K
Sbjct: 641 EATSALDPETEK 652
>gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 235
Score = 45.7 bits (109), Expect = 3e-06
Identities = 29/125 (23%), Positives = 55/125 (44%), Gaps = 39/125 (31%)
Query: 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGR 107
LSGGQ+ R+++A + ++ LLD+P + +D
Sbjct: 139 LSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDP--------------------------- 171
Query: 108 SFFGSALGVRGALSLVRTSFLKE---KTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTT 163
G R L L++ LKE KT++++TH ++ + + D V++L+ G + A G
Sbjct: 172 ------KGRRELLELLKK--LKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDP 223
Query: 164 TQLLA 168
++
Sbjct: 224 AEIFN 228
>gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 352
Score = 46.2 bits (110), Expect = 4e-06
Identities = 27/125 (21%), Positives = 55/125 (44%), Gaps = 35/125 (28%)
Query: 47 SLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWG 106
+LSGG++ R+++ RA+ ++ L+D+PL+++D +PR
Sbjct: 128 TLSGGEKQRVAIGRALLTAPELLLMDEPLASLD------------------LPR------ 163
Query: 107 RSFFGSALGVRGALSLVRTSFLKEKTVML-ITHQIQYLTHV-DHVMLLEKGSVEAFGTTT 164
R L + + +L ++H + + + D V++LE G V+A G
Sbjct: 164 ---------KREILPYLERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLE 214
Query: 165 QLLAS 169
++ S
Sbjct: 215 EVWGS 219
>gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase
component [Amino acid transport and metabolism].
Length = 268
Score = 45.7 bits (109), Expect = 4e-06
Identities = 17/35 (48%), Positives = 24/35 (68%)
Query: 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHV 82
LSGGQR RI +ARA+ + + D+P+SA+D V
Sbjct: 110 LSGGQRQRIGIARALALNPKLIVADEPVSALDVSV 144
>gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding
protein. This model represents the ATP-binding cassette
(ABC) protein of the three subunit molybdate ABC
transporter. The three proteins of this complex are
homologous to proteins of the sulfate ABC transporter.
Molybdenum may be used in nitrogenases of
nitrogen-fixing bacteria and in molybdopterin cofactors.
In some cases, molybdate may be transported by a sulfate
transporter rather than by a specific molybdate
transporter [Transport and binding proteins, Anions].
Length = 354
Score = 45.5 bits (108), Expect = 6e-06
Identities = 29/125 (23%), Positives = 53/125 (42%), Gaps = 33/125 (26%)
Query: 47 SLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWG 106
LSGG++ R+++ RA+ + L+D+PL+A+D PR
Sbjct: 131 RLSGGEKQRVAIGRALLSSPRLLLMDEPLAALD------------------DPRKYE--- 169
Query: 107 RSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHV-DHVMLLEKGSVEAFGTTTQ 165
+ L + F ++ ++H +Q + + D V++LE G V A G +
Sbjct: 170 ---------ILPYLERLHAEF--GIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAE 218
Query: 166 LLASG 170
+ AS
Sbjct: 219 VWASP 223
>gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit;
Provisional.
Length = 353
Score = 45.5 bits (108), Expect = 6e-06
Identities = 20/39 (51%), Positives = 27/39 (69%)
Query: 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHL 86
LSGGQ+ R++LARA+ + LLD+P A+DA V K L
Sbjct: 137 LSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKEL 175
>gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component
[Coenzyme metabolism].
Length = 231
Score = 45.0 bits (107), Expect = 7e-06
Identities = 34/125 (27%), Positives = 56/125 (44%), Gaps = 37/125 (29%)
Query: 47 SLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWG 106
LSGGQR R++LAR + + + LLD+P SA+D
Sbjct: 129 ELSGGQRQRVALARCLVREQPILLLDEPFSALDP-------------------------- 162
Query: 107 RSFFGSALGVR-GALSLVRTSFLKEK-TVMLITHQIQYLTHV-DHVMLLEKGSVEAFGTT 163
+R L+LV + K T++++TH + + D V+ L+ G + A G+T
Sbjct: 163 --------ALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGST 214
Query: 164 TQLLA 168
+LL+
Sbjct: 215 QELLS 219
>gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 253
Score = 44.8 bits (106), Expect = 8e-06
Identities = 35/125 (28%), Positives = 53/125 (42%), Gaps = 35/125 (28%)
Query: 43 DKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFD 102
D +SLSGGQ+ R+ +AR + +V L+D+P SA+D + ED I L
Sbjct: 145 DSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDP-IATAKIEDLIEDLK------- 196
Query: 103 SRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHV-DHVMLLEKGSVEAFG 161
KE TV+++TH +Q V D+ + G + F
Sbjct: 197 --------------------------KEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFD 230
Query: 162 TTTQL 166
TTQ+
Sbjct: 231 KTTQI 235
>gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation
factor 3, subfamily F. Elongation factor 3 (EF-3) is a
cytosolic protein required by fungal ribosomes for in
vitro protein synthesis and for in vivo growth. EF-3
stimulates the binding of the EF-1: GTP: aa-tRNA
ternary complex to the ribosomal A site by facilitated
release of the deacylated tRNA from the E site. The
reaction requires ATP hydrolysis. EF-3 contains two ATP
nucleotide binding sequence (NBS) motifs. NBSI is
sufficient for the intrinsic ATPase activity. NBSII is
essential for the ribosome-stimulated functions.
Length = 144
Score = 43.6 bits (104), Expect = 8e-06
Identities = 11/27 (40%), Positives = 21/27 (77%)
Query: 48 LSGGQRARISLARAVYKRADVYLLDDP 74
LSGG++ R++LA+ + + ++ LLD+P
Sbjct: 71 LSGGEKMRLALAKLLLENPNLLLLDEP 97
>gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 286
Score = 44.9 bits (106), Expect = 9e-06
Identities = 34/126 (26%), Positives = 53/126 (42%), Gaps = 35/126 (27%)
Query: 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGR 107
LSGGQ+ R+ +AR + ++ LLD+P SA+D + ED I L
Sbjct: 183 LSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKI-EDLIQEL------------- 228
Query: 108 SFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHV-DHVMLLEKGSVEAFGTTTQL 166
R S+ T+M++TH +Q + V D+ M +G + T QL
Sbjct: 229 ----------------RGSY----TIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQL 268
Query: 167 LASGLD 172
+ D
Sbjct: 269 FTNPKD 274
>gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 269
Score = 44.7 bits (106), Expect = 1e-05
Identities = 34/136 (25%), Positives = 57/136 (41%), Gaps = 35/136 (25%)
Query: 47 SLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWG 106
+LSGGQ+ R+++A + V +LD+ S +D ++L
Sbjct: 142 ALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNL-------------------- 181
Query: 107 RSFFGSALGVRGALSLVR-TSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQ 165
L LVR T++ ITH + DHV+++ KG+V GT T+
Sbjct: 182 -------------LDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTE 228
Query: 166 LLASGLDFTQL-LDAP 180
+ + T++ LD P
Sbjct: 229 IFDHAEELTRIGLDLP 244
>gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein;
Provisional.
Length = 264
Score = 44.4 bits (105), Expect = 1e-05
Identities = 21/43 (48%), Positives = 31/43 (72%), Gaps = 4/43 (9%)
Query: 41 VGDK----GVSLSGGQRARISLARAVYKRADVYLLDDPLSAVD 79
V DK G+SLSGGQ+ R+ +ARA+ + +V L+D+P SA+D
Sbjct: 141 VKDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALD 183
>gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the
molybdate transporter. Archaeal protein closely related
to ModC. ModC is an ABC-type transporter and the ATPase
component of a molybdate transport system that also
includes the periplasmic binding protein ModA and the
membrane protein ModB. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 235
Score = 44.2 bits (105), Expect = 1e-05
Identities = 26/116 (22%), Positives = 45/116 (38%), Gaps = 33/116 (28%)
Query: 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGR 107
LSGG++ R+++ARA+ + LLD+P SA+D + L E+ + +
Sbjct: 130 LSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREEL------------KKIRK 177
Query: 108 SFFGSALGVRGALSLVRTSFLKEKTVMLITH-QIQYLTHVDHVMLLEKGSVEAFGT 162
F TV+ +TH + D V ++ G + G
Sbjct: 178 EF--------------------GVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGK 213
>gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit;
Provisional.
Length = 377
Score = 44.8 bits (106), Expect = 1e-05
Identities = 18/32 (56%), Positives = 26/32 (81%)
Query: 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVD 79
LSGGQR R++LAR++ KR + LLD+P+ A+D
Sbjct: 150 LSGGQRQRVALARSLAKRPKLLLLDEPMGALD 181
>gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport
system. The ABC transporters belonging to the YhbG
family are similar to members of the Mj1267_LivG family,
which is involved in the transport of branched-chain
amino acids. The genes yhbG and yhbN are located in a
single operon and may function together in cell envelope
during biogenesis. YhbG is the putative ATP-binding
cassette component and YhbN is the putative
periplasmic-binding protein. Depletion of each gene
product leads to growth arrest, irreversible cell damage
and loss of viability in E. coli. The YhbG homolog
(NtrA) is essential in Rhizobium meliloti, a symbiotic
nitrogen-fixing bacterium.
Length = 232
Score = 44.1 bits (105), Expect = 1e-05
Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 5/68 (7%)
Query: 12 HPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLL 71
R K+ L E+F K SLSGG+R R+ +ARA+ LL
Sbjct: 103 RGLSKKEREEKLEELLEEFHITHLRKS-----KASSLSGGERRRVEIARALATNPKFLLL 157
Query: 72 DDPLSAVD 79
D+P + VD
Sbjct: 158 DEPFAGVD 165
>gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 269
Score = 44.4 bits (105), Expect = 1e-05
Identities = 17/37 (45%), Positives = 26/37 (70%)
Query: 43 DKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVD 79
+ G SLSGGQ+ R+ +AR + +V L+D+P SA+D
Sbjct: 150 ESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALD 186
>gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit;
Provisional.
Length = 257
Score = 44.3 bits (105), Expect = 1e-05
Identities = 19/34 (55%), Positives = 27/34 (79%)
Query: 47 SLSGGQRARISLARAVYKRADVYLLDDPLSAVDA 80
+LSGGQ+ R++LARA+ R + LLD+PL A+DA
Sbjct: 133 ALSGGQKQRVALARALIHRPGLLLLDEPLGALDA 166
>gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding
protein; Provisional.
Length = 369
Score = 44.3 bits (105), Expect = 2e-05
Identities = 17/34 (50%), Positives = 25/34 (73%)
Query: 47 SLSGGQRARISLARAVYKRADVYLLDDPLSAVDA 80
+LSGGQR R+++ R + V+LLD+PLS +DA
Sbjct: 133 ALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDA 166
>gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 226
Score = 43.7 bits (104), Expect = 2e-05
Identities = 15/41 (36%), Positives = 25/41 (60%)
Query: 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFE 88
LSGGQ+ R+++ARA+ + L D+P +D+ K + E
Sbjct: 143 LSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLE 183
>gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein;
Provisional.
Length = 267
Score = 44.0 bits (104), Expect = 2e-05
Identities = 19/43 (44%), Positives = 29/43 (67%), Gaps = 2/43 (4%)
Query: 37 DRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVD 79
DR + + G LSGGQ+ R+ +ARA+ +V L+D+P SA+D
Sbjct: 155 DR--LHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALD 195
>gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter
membrane\ATP-binding components; Provisional.
Length = 592
Score = 44.3 bits (105), Expect = 2e-05
Identities = 33/137 (24%), Positives = 64/137 (46%), Gaps = 34/137 (24%)
Query: 33 LPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCIT 92
LP G T +G++G +LS GQ+ ++LAR + + + +LD+ + +D+
Sbjct: 462 LPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDS------------ 509
Query: 93 GLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLL 152
G+ ++ AL+ VR + T+++I H++ + D +++L
Sbjct: 510 ------------------GTEQAIQQALAAVR----EHTTLVVIAHRLSTIVEADTILVL 547
Query: 153 EKGSVEAFGTTTQLLAS 169
+G GT QLLA+
Sbjct: 548 HRGQAVEQGTHQQLLAA 564
>gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase
component [General function prediction only].
Length = 243
Score = 43.3 bits (103), Expect = 2e-05
Identities = 17/36 (47%), Positives = 23/36 (63%)
Query: 44 KGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVD 79
K SLSGG+R R+ +ARA+ LLD+P + VD
Sbjct: 136 KAYSLSGGERRRVEIARALAANPKFILLDEPFAGVD 171
>gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette
domain of methionine transporter. MetN (also known as
YusC) is an ABC-type transporter encoded by metN of the
metNPQ operon in Bacillus subtilis that is involved in
methionine transport. Other members of this system
include the MetP permease and the MetQ substrate binding
protein. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 233
Score = 43.3 bits (103), Expect = 3e-05
Identities = 34/123 (27%), Positives = 53/123 (43%), Gaps = 33/123 (26%)
Query: 47 SLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWG 106
LSGGQ+ R+ +ARA+ V L D+ SA+D I L + R
Sbjct: 140 QLSGGQKQRVGIARALANNPKVLLCDEATSALDPET-----TQSILALLRDINR------ 188
Query: 107 RSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHV-DHVMLLEKGSVEAFGTTTQ 165
LG+ T++LITH+++ + + D V ++EKG V GT +
Sbjct: 189 ------ELGL---------------TIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEE 227
Query: 166 LLA 168
+ A
Sbjct: 228 VFA 230
>gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 279
Score = 43.5 bits (103), Expect = 3e-05
Identities = 39/138 (28%), Positives = 60/138 (43%), Gaps = 39/138 (28%)
Query: 47 SLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWG 106
LSGGQ+ R+++A + + D+ +LD+ S +D PR G
Sbjct: 140 RLSGGQKQRVAIAGVLALQPDIIILDEATSMLD-------------------PR-----G 175
Query: 107 RSFFGSALGVRGALSLVRTSFLKEK---TVMLITHQIQYLTHVDHVMLLEKGSVEAFGTT 163
R R L VR LKE+ TV+ ITH + D V+++ KG + GT
Sbjct: 176 R---------REVLETVRQ--LKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTP 224
Query: 164 TQLLASGLDFTQL-LDAP 180
++ SG ++ LD P
Sbjct: 225 EEIFKSGHMLQEIGLDVP 242
>gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 43.4 bits (102), Expect = 3e-05
Identities = 30/123 (24%), Positives = 51/123 (41%), Gaps = 35/123 (28%)
Query: 46 VSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRW 105
+ LSGGQ+ R+ +AR + + DV L+D+P SA+D + ED + L
Sbjct: 146 LKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDP-ISTLKIEDLMVELK---------- 194
Query: 106 GRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHV-DHVMLLEKGSVEAFGTTT 164
KE T++++TH +Q + V D+ G + F T
Sbjct: 195 -----------------------KEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTE 231
Query: 165 QLL 167
++
Sbjct: 232 KIF 234
>gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein;
Provisional.
Length = 267
Score = 43.2 bits (102), Expect = 3e-05
Identities = 16/35 (45%), Positives = 27/35 (77%)
Query: 45 GVSLSGGQRARISLARAVYKRADVYLLDDPLSAVD 79
++LSGGQ+ R+ +ARA+ + D+ L+D+P SA+D
Sbjct: 161 ALTLSGGQQQRLCIARAIAVKPDILLMDEPASALD 195
>gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the
binding protein-dependent phosphonate transport system.
Phosphonates are a class of organophosphorus compounds
characterized by a chemically stable
carbon-to-phosphorus (C-P) bond. Phosphonates are
widespread among naturally occurring compounds in all
kingdoms of wildlife, but only prokaryotic
microorganisms are able to cleave this bond. Certain
bacteria such as E. coli can use alkylphosphonates as a
phosphorus source. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 241
Score = 42.9 bits (102), Expect = 3e-05
Identities = 13/32 (40%), Positives = 26/32 (81%)
Query: 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVD 79
LSGGQ+ R+++ARA+ ++ + L D+P++++D
Sbjct: 145 LSGGQQQRVAIARALMQQPKLILADEPVASLD 176
>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport
systems, contain duplicated ATPase [General function
prediction only].
Length = 539
Score = 43.3 bits (103), Expect = 3e-05
Identities = 31/145 (21%), Positives = 56/145 (38%), Gaps = 43/145 (29%)
Query: 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGR 107
LSGG R R+ +A A+ + + + D+P +A+D +
Sbjct: 155 LSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQI--------------------- 193
Query: 108 SFFGSALGVRGALSLVRTSFLKEK--TVMLITHQ---IQYLTHVDHVMLLEKGSVEAFGT 162
L L++ +E V+ ITH + L D V+++ KG + G
Sbjct: 194 ------------LDLLK-DLQRELGMAVLFITHDLGVVAELA--DRVVVMYKGEIVETGP 238
Query: 163 TTQLLASGL-DFTQ-LLDAPEEEDK 185
T ++L++ +T+ LL A
Sbjct: 239 TEEILSNPQHPYTRGLLAAVPRLGD 263
Score = 42.2 bits (100), Expect = 1e-04
Identities = 17/35 (48%), Positives = 26/35 (74%)
Query: 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHV 82
LSGGQR R+++ARA+ + +LD+P+SA+D V
Sbjct: 430 LSGGQRQRVAIARALALEPKLLILDEPVSALDVSV 464
>gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 259
Score = 43.0 bits (101), Expect = 4e-05
Identities = 18/34 (52%), Positives = 26/34 (76%)
Query: 46 VSLSGGQRARISLARAVYKRADVYLLDDPLSAVD 79
+SLSGGQ+ R+ +ARA+ DV L+D+P SA+D
Sbjct: 154 LSLSGGQQQRLCIARALATNPDVLLMDEPTSALD 187
>gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of
nickel/oligopeptides specific transporters. The ABC
transporter subfamily specific for the transport of
dipeptides, oligopeptides (OppD), and nickel (NikDE).
The NikABCDE system of E. coli belongs to this family
and is composed of the periplasmic binding protein NikA,
two integral membrane components (NikB and NikC), and
two ATPase (NikD and NikE). The NikABCDE transporter is
synthesized under anaerobic conditions to meet the
increased demand for nickel resulting from hydrogenase
synthesis. The molecular mechanism of nickel uptake in
many bacteria and most archaea is not known. Many other
members of this ABC family are also involved in the
uptake of dipeptides and oligopeptides. The oligopeptide
transport system (Opp) is a five-component ABC transport
composed of a membrane-anchored substrate binding
proteins (SRP), OppA, two transmembrane proteins, OppB
and OppC, and two ATP-binding domains, OppD and OppF.
Length = 228
Score = 42.9 bits (102), Expect = 4e-05
Identities = 16/35 (45%), Positives = 24/35 (68%)
Query: 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHV 82
LSGGQR R+++ARA+ + + D+P SA+D V
Sbjct: 146 LSGGQRQRVAIARALALNPKLLIADEPTSALDVSV 180
>gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 42.9 bits (101), Expect = 4e-05
Identities = 33/132 (25%), Positives = 57/132 (43%), Gaps = 37/132 (28%)
Query: 36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLH 95
GDR + D LSGGQ+ R+ +ARA+ + + L+D+P SA+D V ++ E+ I L
Sbjct: 140 GDR--LKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDP-VATNVIENLIQELK 196
Query: 96 TGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHV-DHVMLLEK 154
K T++++TH ++ V D V +
Sbjct: 197 ---------------------------------KNFTIIVVTHSMKQAKKVSDRVAFFQS 223
Query: 155 GSVEAFGTTTQL 166
G + + TT ++
Sbjct: 224 GRIVEYNTTQEI 235
>gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 259
Score = 42.8 bits (101), Expect = 4e-05
Identities = 17/43 (39%), Positives = 25/43 (58%)
Query: 46 VSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFE 88
LSGG R R+ +ARA+ + LLD+P A+DA + + E
Sbjct: 131 WQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQE 173
>gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the
histidine and glutamine transporters. HisP and GlnQ are
the ATP-binding components of the bacterial periplasmic
histidine and glutamine permeases, respectively.
Histidine permease is a multi-subunit complex containing
the HisQ and HisM integral membrane subunits and two
copies of HisP. HisP has properties intermediate between
those of integral and peripheral membrane proteins and
is accessible from both sides of the membrane,
presumably by its interaction with HisQ and HisM. The
two HisP subunits form a homodimer within the complex.
The domain structure of the amino acid uptake systems is
typical for prokaryotic extracellular solute binding
protein-dependent uptake systems. All of the amino acid
uptake systems also have at least one, and in a few
cases, two extracellular solute binding proteins located
in the periplasm of Gram-negative bacteria, or attached
to the cell membrane of Gram-positive bacteria. The
best-studied member of the PAAT (polar amino acid
transport) family is the HisJQMP system of S.
typhimurium, where HisJ is the extracellular solute
binding proteins and HisP is the ABC protein.
Length = 213
Score = 42.5 bits (101), Expect = 4e-05
Identities = 16/33 (48%), Positives = 23/33 (69%)
Query: 47 SLSGGQRARISLARAVYKRADVYLLDDPLSAVD 79
LSGGQ+ R+++ARA+ V L D+P SA+D
Sbjct: 135 QLSGGQQQRVAIARALAMNPKVMLFDEPTSALD 167
>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated
ATPase domains [General function prediction only].
Length = 530
Score = 43.0 bits (102), Expect = 4e-05
Identities = 16/28 (57%), Positives = 22/28 (78%)
Query: 47 SLSGGQRARISLARAVYKRADVYLLDDP 74
SLSGG R R++LARA+ + D+ LLD+P
Sbjct: 153 SLSGGWRRRVALARALLEEPDLLLLDEP 180
Score = 42.6 bits (101), Expect = 7e-05
Identities = 12/28 (42%), Positives = 21/28 (75%)
Query: 47 SLSGGQRARISLARAVYKRADVYLLDDP 74
LSGG++AR+ LA+ + + ++ LLD+P
Sbjct: 439 VLSGGEKARLLLAKLLLQPPNLLLLDEP 466
>gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport
system, ATPase component [Carbohydrate transport and
metabolism / Cell envelope biogenesis, outer membrane].
Length = 249
Score = 42.6 bits (101), Expect = 5e-05
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 40/138 (28%)
Query: 28 EDFAQLPSGDRTLVGDKGV-SLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHL 86
+FA+L GD D+ V + S G AR++ + A + D+ LLD+ L+ DA
Sbjct: 132 IEFAEL--GD---FIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDA------ 180
Query: 87 FEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHV 146
F L + K KT++L++H + +
Sbjct: 181 -------------AF--------------QEKCLERLNELVEKNKTIVLVSHDLGAIKQY 213
Query: 147 -DHVMLLEKGSVEAFGTT 163
D + LE G + G+
Sbjct: 214 CDRAIWLEHGQIRMEGSP 231
>gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 257
Score = 42.7 bits (100), Expect = 5e-05
Identities = 30/123 (24%), Positives = 52/123 (42%), Gaps = 35/123 (28%)
Query: 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGR 107
LSGGQ+ R+++ARA+ + V L+D+P S +D V E IT L
Sbjct: 154 LSGGQQQRLTIARALALKPKVLLMDEPTSMIDI-VNSQAIEKLITELK------------ 200
Query: 108 SFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHV-DHVMLLEKGSVEAFGTTTQL 166
E +++++H Q + V D+V L G + +G++ ++
Sbjct: 201 ---------------------NEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEI 239
Query: 167 LAS 169
S
Sbjct: 240 FTS 242
>gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein.
This model describes the energy-transducing ATPase
subunit ThiQ of the ThiBPQ thiamine (and thiamine
pyrophosphate) ABC transporter in several
Proteobacteria. This protein is found so far only in
Proteobacteria, and is found in complete genomes only if
the ThiB and ThiP subunits are also found [Transport and
binding proteins, Other].
Length = 213
Score = 42.5 bits (100), Expect = 5e-05
Identities = 17/33 (51%), Positives = 24/33 (72%)
Query: 47 SLSGGQRARISLARAVYKRADVYLLDDPLSAVD 79
LSGGQR R++LAR + + + LLD+P SA+D
Sbjct: 128 QLSGGQRQRVALARCLVRPNPILLLDEPFSALD 160
>gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein;
Provisional.
Length = 250
Score = 42.4 bits (100), Expect = 5e-05
Identities = 16/33 (48%), Positives = 24/33 (72%)
Query: 47 SLSGGQRARISLARAVYKRADVYLLDDPLSAVD 79
LSGGQ+ R+ +ARA+ +V L+D+P SA+D
Sbjct: 146 GLSGGQQQRLCIARALAVEPEVLLMDEPTSALD 178
>gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein;
Provisional.
Length = 352
Score = 42.6 bits (101), Expect = 5e-05
Identities = 33/127 (25%), Positives = 61/127 (48%), Gaps = 39/127 (30%)
Query: 47 SLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWG 106
SLSGG++ R+++ RA+ ++ L+D+PL+++D +PR
Sbjct: 128 SLSGGEKQRVAIGRALLTAPELLLMDEPLASLD------------------LPR------ 163
Query: 107 RSFFGSALGVRGALS-LVRTSFLKE-KTVML-ITHQIQYLTHV-DHVMLLEKGSVEAFGT 162
R L L R + +E +L ++H + + + D V++LE+G V+AFG
Sbjct: 164 ---------KRELLPYLERLA--REINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGP 212
Query: 163 TTQLLAS 169
++ AS
Sbjct: 213 LEEVWAS 219
>gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit,
PQQ-dependent alcohol dehydrogenase system. Members of
this protein family are the ATP-binding subunit of an
ABC transporter system that is associated with PQQ
biosynthesis and PQQ-dependent alcohol dehydrogenases.
While this family shows homology to several efflux ABC
transporter subunits, the presence of a periplasmic
substrate-binding protein and association with systems
for catabolism of alcohols suggests a role in import
rather than detoxification [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 236
Score = 42.3 bits (100), Expect = 6e-05
Identities = 36/142 (25%), Positives = 56/142 (39%), Gaps = 34/142 (23%)
Query: 28 EDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLF 87
E A+L +R DK L+GG R R+ +ARA+ R + LLD+P +D
Sbjct: 115 ELLARLGLAERA--DDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDP------- 165
Query: 88 EDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVD 147
SR A +L R L +V+ TH + + D
Sbjct: 166 --------------ASR--------AAITAHVRALARDQGL---SVLWATHLVDEIEADD 200
Query: 148 HVMLLEKGSVEAFGTTTQLLAS 169
+++L +G V A G +L +
Sbjct: 201 RLVVLHRGRVLADGAAAELRGA 222
>gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 285
Score = 42.5 bits (100), Expect = 6e-05
Identities = 22/50 (44%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 45 GVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGL 94
G+ LSGGQ+ R+ +ARA+ +V L+D+P SA+D V ED I L
Sbjct: 178 GLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDP-VATSKIEDLIEEL 226
>gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein;
Provisional.
Length = 258
Score = 42.4 bits (100), Expect = 6e-05
Identities = 18/35 (51%), Positives = 25/35 (71%)
Query: 45 GVSLSGGQRARISLARAVYKRADVYLLDDPLSAVD 79
G LSGGQ+ R+ +ARA+ DV L+D+P SA+D
Sbjct: 146 GGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALD 180
>gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit;
Provisional.
Length = 232
Score = 41.9 bits (99), Expect = 7e-05
Identities = 17/32 (53%), Positives = 24/32 (75%)
Query: 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVD 79
LSGGQR R++LAR + + + LLD+P SA+D
Sbjct: 130 LSGGQRQRVALARCLVREQPILLLDEPFSALD 161
>gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease
protein; Provisional.
Length = 648
Score = 42.8 bits (101), Expect = 7e-05
Identities = 18/37 (48%), Positives = 26/37 (70%)
Query: 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGK 84
LSGGQ+ R+S+ARA+ V L D+P A+D+H G+
Sbjct: 145 LSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGE 181
>gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 268
Score = 42.3 bits (99), Expect = 7e-05
Identities = 31/125 (24%), Positives = 51/125 (40%), Gaps = 35/125 (28%)
Query: 46 VSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRW 105
+SLSGGQ+ R+ +AR + + V LLD+P SA+D + E+ IT L
Sbjct: 163 LSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDP-ISNAKIEELITELK---------- 211
Query: 106 GRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHV-DHVMLLEKGSVEAFGTTT 164
+E +++++TH +Q V D G + + T
Sbjct: 212 -----------------------EEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTE 248
Query: 165 QLLAS 169
Q+ S
Sbjct: 249 QIFTS 253
>gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit;
Provisional.
Length = 255
Score = 42.0 bits (99), Expect = 7e-05
Identities = 17/33 (51%), Positives = 23/33 (69%)
Query: 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVDA 80
LSGGQR R+ +ARA+ + LLD+P A+DA
Sbjct: 129 LSGGQRQRVGIARALAANPQLLLLDEPFGALDA 161
>gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system,
duplicated ATPase component [General function prediction
only].
Length = 534
Score = 42.3 bits (100), Expect = 8e-05
Identities = 18/34 (52%), Positives = 26/34 (76%)
Query: 49 SGGQRARISLARAVYKRADVYLLDDPLSAVDAHV 82
SGGQR RI++ARA+ + ++ LLD+P SA+D V
Sbjct: 428 SGGQRQRIAIARALILKPELILLDEPTSALDRSV 461
Score = 34.2 bits (79), Expect = 0.039
Identities = 38/167 (22%), Positives = 65/167 (38%), Gaps = 44/167 (26%)
Query: 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGR 107
LSGGQR R+ +A A+ D+ + D+P +A+D V +
Sbjct: 158 LSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQI--------------------- 196
Query: 108 SFFGSALGVRGALSLVRTSFLKEK---TVMLITHQIQYLTHV-DHVMLLEKGSVEAFGTT 163
L L++ L+ + ++ ITH + + D V +++ G + GTT
Sbjct: 197 ------------LDLLKE--LQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVETGTT 242
Query: 164 TQLLASGL-DFTQLLDAPEEEDKAENEVDDNASGTLLHPRQSSVRVS 209
L A+ +T+ L A E +D + LL +RV
Sbjct: 243 ETLFAAPQHPYTRKLLAAEPSGDPPPLPED--APVLLEVED--LRVW 285
>gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein;
Provisional.
Length = 272
Score = 42.2 bits (99), Expect = 8e-05
Identities = 17/32 (53%), Positives = 24/32 (75%)
Query: 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVD 79
LSGGQ+ R+ LARA+ ++ V LLD+P + VD
Sbjct: 143 LSGGQKKRVFLARAIAQQGQVILLDEPFTGVD 174
>gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding
protein YecC; Provisional.
Length = 250
Score = 42.0 bits (99), Expect = 8e-05
Identities = 17/32 (53%), Positives = 25/32 (78%)
Query: 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVD 79
LSGGQ+ R+++ARA+ R +V L D+P SA+D
Sbjct: 145 LSGGQQQRVAIARALAMRPEVILFDEPTSALD 176
>gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit;
Provisional.
Length = 327
Score = 42.3 bits (100), Expect = 8e-05
Identities = 18/34 (52%), Positives = 25/34 (73%)
Query: 49 SGGQRARISLARAVYKRADVYLLDDPLSAVDAHV 82
SGGQR RI++ARA+ DV + D+P+SA+D V
Sbjct: 156 SGGQRQRIAIARALMLDPDVVVADEPVSALDVSV 189
>gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein;
Provisional.
Length = 272
Score = 41.9 bits (99), Expect = 9e-05
Identities = 17/37 (45%), Positives = 25/37 (67%)
Query: 43 DKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVD 79
+ LSGGQ+ R+ +ARA+ +V LLD+P SA+D
Sbjct: 164 ENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALD 200
>gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding
subunit; Provisional.
Length = 356
Score = 42.1 bits (100), Expect = 9e-05
Identities = 17/33 (51%), Positives = 25/33 (75%)
Query: 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVDA 80
LSGGQR R+++ RA+ + V+L D+PLS +DA
Sbjct: 135 LSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDA 167
>gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component
[Energy production and conversion / Inorganic ion
transport and metabolism].
Length = 245
Score = 41.6 bits (98), Expect = 1e-04
Identities = 10/32 (31%), Positives = 20/32 (62%)
Query: 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVD 79
S G + ++++ARA+ + +LD+P S +D
Sbjct: 134 FSTGMKQKVAIARALVHDPSILVLDEPTSGLD 165
>gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit;
Provisional.
Length = 351
Score = 42.0 bits (99), Expect = 1e-04
Identities = 17/33 (51%), Positives = 25/33 (75%)
Query: 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVDA 80
+SGGQ+ R++LARA+ + V L D+PLS +DA
Sbjct: 137 ISGGQQQRVALARALILKPKVLLFDEPLSNLDA 169
>gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1,
subfamily C. Domain 2 of NFT1 (New full-length MRP-type
transporter 1). NFT1 belongs to the MRP (multidrug
resistance-associated protein) family of ABC
transporters. Some of the MRP members have five
additional transmembrane segments in their N-terminus,
but the function of these additional membrane-spanning
domains is not clear. The MRP was found in the
multidrug-resisting lung cancer cell in which
p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions such as
glutathione, glucuronate, and sulfate.
Length = 207
Score = 41.2 bits (97), Expect = 1e-04
Identities = 26/122 (21%), Positives = 53/122 (43%), Gaps = 34/122 (27%)
Query: 41 VGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPR 100
V + G++LS GQR + LARA+ KR V +LD+ +++D
Sbjct: 119 VSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYAT------------------ 160
Query: 101 FDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAF 160
D+ ++ +R F T++ I H+++ + D +++++ G V+ +
Sbjct: 161 -DALIQKT--------------IREEF-TNSTILTIAHRLRTIIDYDKILVMDAGEVKEY 204
Query: 161 GT 162
Sbjct: 205 DH 206
>gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 41.5 bits (97), Expect = 1e-04
Identities = 18/37 (48%), Positives = 27/37 (72%)
Query: 43 DKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVD 79
+ +SLSGGQ+ R+ +AR + + DV LLD+P SA+D
Sbjct: 144 ESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALD 180
>gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system,
ATPase component [Inorganic ion transport and
metabolism].
Length = 258
Score = 41.5 bits (98), Expect = 1e-04
Identities = 13/32 (40%), Positives = 26/32 (81%)
Query: 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVD 79
LSGGQ+ R+++ARA+ ++ + L D+P++++D
Sbjct: 148 LSGGQQQRVAIARALVQQPKIILADEPVASLD 179
>gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 241
Score = 41.3 bits (97), Expect = 1e-04
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 10/75 (13%)
Query: 5 LAPMGPGHPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYK 64
PM G + + + + L +++A + LSGG+ R+S+AR +
Sbjct: 99 YGPMLKGEKNVDVEYYLSIVGLNKEYATRDVKN----------LSGGEAQRVSIARTLAN 148
Query: 65 RADVYLLDDPLSAVD 79
+V LLD+P SA+D
Sbjct: 149 NPEVLLLDEPTSALD 163
>gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 41.1 bits (96), Expect = 1e-04
Identities = 18/35 (51%), Positives = 25/35 (71%)
Query: 45 GVSLSGGQRARISLARAVYKRADVYLLDDPLSAVD 79
G LSGGQ+ R+ +ARA+ +V LLD+P SA+D
Sbjct: 144 GTRLSGGQQQRLCIARALAVEPEVILLDEPTSALD 178
>gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette
component of monosaccharide transport system. This
family represents the domain I of the carbohydrate
uptake proteins that transport only monosaccharides
(Monos). The Carb_Monos family is involved in the uptake
of monosaccharides, such as pentoses (such as xylose,
arabinose, and ribose) and hexoses (such as xylose,
arabinose, and ribose), that cannot be broken down to
simple sugars by hydrolysis. Pentoses include xylose,
arabinose, and ribose. Important hexoses include
glucose, galactose, and fructose. In members of the
Carb_monos family, the single hydrophobic gene product
forms a homodimer while the ABC protein represents a
fusion of two nucleotide-binding domains. However, it is
assumed that two copies of the ABC domains are present
in the assembled transporter.
Length = 163
Score = 40.1 bits (95), Expect = 2e-04
Identities = 14/41 (34%), Positives = 26/41 (63%)
Query: 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFE 88
LS G+R + +ARA+ + A + +LD+P +A+ + LF+
Sbjct: 83 LSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFK 123
>gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 249
Score = 41.0 bits (96), Expect = 2e-04
Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 45 GVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGL 94
LSGGQ+ R+ +AR + DV L+D+P SA+D + H E+ + L
Sbjct: 143 AFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDP-IATHKIEELMEEL 191
>gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c
biogenesis, ATPase component [Posttranslational
modification, protein turnover, chaperones].
Length = 209
Score = 40.4 bits (95), Expect = 2e-04
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 47 SLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITG 93
LS GQ+ R++LAR A +++LD+P +A+D G L +
Sbjct: 130 QLSAGQQRRVALARLWLSPAPLWILDEPFTALDKE-GVALLTALMAA 175
>gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 265
Score = 40.8 bits (95), Expect = 2e-04
Identities = 31/124 (25%), Positives = 52/124 (41%), Gaps = 35/124 (28%)
Query: 41 VGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPR 100
+GD +LSGGQ+ R+ +ARA+ ++ L D+P SA+D + E+ I+ L V
Sbjct: 155 LGDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDP-IATASIEELISDLKNKV-- 211
Query: 101 FDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHV-DHVMLLEKGSVEA 159
T++++TH +Q V D+ + G +
Sbjct: 212 -------------------------------TILIVTHNMQQAARVSDYTAYMYMGELIE 240
Query: 160 FGTT 163
FG T
Sbjct: 241 FGAT 244
>gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter
subfamily G of the ATP-binding cassette superfamily.
ABCG transporters are involved in eye pigment (EP)
precursor transport, regulation of lipid-trafficking
mechanisms, and pleiotropic drug resistance (DR). DR is
a well-described phenomenon occurring in fungi and
shares several similarities with processes in bacteria
and higher eukaryotes. Compared to other members of the
ABC transporter subfamilies, the ABCG transporter family
is composed of proteins that have an ATP-binding
cassette domain at the N-terminus and a TM
(transmembrane) domain at the C-terminus.
Length = 194
Score = 40.2 bits (95), Expect = 2e-04
Identities = 30/117 (25%), Positives = 48/117 (41%), Gaps = 35/117 (29%)
Query: 47 SLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWG 106
LSGG+R R+S+A + + LD+P S +D+
Sbjct: 111 GLSGGERKRVSIALELVSNPSLLFLDEPTSGLDS-------------------------- 144
Query: 107 RSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQY-LTHV-DHVMLLEKGSVEAFG 161
SAL V +SL+R +T++ HQ + + D ++LL +G V FG
Sbjct: 145 ----SSALQV---MSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194
>gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette
domain 2 of RNase L inhibitor. The ABC ATPase, RNase L
inhibitor (RLI), is a key enzyme in ribosomal
biogenesis, formation of translation preinitiation
complexes, and assembly of HIV capsids. RLI's are not
transport proteins and thus cluster with a group of
soluble proteins that lack the transmembrane components
commonly found in other members of the family.
Structurally, RLI's have an N-terminal Fe-S domain and
two nucleotide-binding domains which are arranged to
form two composite active sites in their interface
cleft. RLI is one of the most conserved enzymes between
archaea and eukaryotes with a sequence identity of more
than 48%. The high degree of evolutionary conservation
suggests that RLI performs a central role in archaeal
and eukaryotic physiology.
Length = 246
Score = 40.9 bits (96), Expect = 2e-04
Identities = 33/134 (24%), Positives = 59/134 (44%), Gaps = 35/134 (26%)
Query: 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGR 107
LSGG+ R+++A + K AD+YLLD+P + +D + R
Sbjct: 116 LSGGELQRVAIAACLSKDADIYLLDEPSAYLDV---------------------EQR--- 151
Query: 108 SFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHV-DHVMLLE-KGSVEAFGTTTQ 165
+ + + R + EKT ++ H I + ++ D +++ E + SV Q
Sbjct: 152 --------LMASKVIRRFAENNEKTAFVVEHDIIMIDYLADRLIVFEGEPSVNGVANPPQ 203
Query: 166 LLASGLD-FTQLLD 178
L SG++ F + LD
Sbjct: 204 SLRSGMNRFLKNLD 217
>gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding
subunit. This model describes the glycine
betaine/L-proline ATP binding subunit in bacteria and
its equivalents in archaea. This transport system belong
to the larger ATP-Binding Cassette (ABC) transporter
superfamily. The characteristic feature of these
transporter is the obligatory coupling of ATP hydrolysis
to substrate translocation. The minimal configuration of
bacterial ABC transport system: an ATPase or ATP binding
subunit; An integral membrane protein; a hydrophilic
polypetpide, which likely functions as substrate binding
protein. Functionally, this transport system is involved
in osmoregulation. Under conditions of stress, the
organism recruits these transport system to accumulate
glycine betaine and other solutes which offer
osmo-protection. It has been demonstrated that glycine
betaine uptake is accompanied by symport with sodium
ions. The locus has been named variously as proU or
opuA. A gene library from L.lactis functionally
complements an E.coli proU mutant. The comlementing
locus is similar to a opuA locus in B.sutlis. This
clarifies the differences in nomenclature [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 363
Score = 41.0 bits (96), Expect = 2e-04
Identities = 31/153 (20%), Positives = 62/153 (40%), Gaps = 44/153 (28%)
Query: 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGR 107
LSGG + R+ LARA+ D+ L+D+ SA+D + + +D + L +
Sbjct: 130 LSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSM-QDELKKLQATL--------- 179
Query: 108 SFFGSALGVRGALSLVRTSFLKEKTVMLITHQI-QYLTHVDHVMLLEKGSVEAFGTTTQL 166
+KT++ ITH + + + D +++++ G + GT ++
Sbjct: 180 ----------------------QKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEI 217
Query: 167 LAS-----------GLDFTQLLDAPEEEDKAEN 188
L + +D +Q+ DA +
Sbjct: 218 LRNPANEYVEEFIGKVDLSQVFDAERIAQRMNT 250
>gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein;
Provisional.
Length = 271
Score = 40.6 bits (95), Expect = 2e-04
Identities = 17/37 (45%), Positives = 24/37 (64%)
Query: 43 DKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVD 79
D LSGGQ+ R+ +AR + DV L+D+P SA+D
Sbjct: 163 DNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALD 199
>gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 223
Score = 40.2 bits (94), Expect = 3e-04
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 4/68 (5%)
Query: 25 ALKEDFAQLPSGDRTLVGDKGVS-LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVG 83
A + A+ D L K ++ LSGG++ RI+L R + + LLD+ SA+D
Sbjct: 112 AALDLLARFALPDSIL--TKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDES-N 168
Query: 84 KHLFEDCI 91
K E+ I
Sbjct: 169 KRNIEEMI 176
>gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 213
Score = 40.2 bits (94), Expect = 3e-04
Identities = 17/34 (50%), Positives = 24/34 (70%)
Query: 47 SLSGGQRARISLARAVYKRADVYLLDDPLSAVDA 80
+LSGGQRAR++L RA+ + LLD+P S +D
Sbjct: 134 TLSGGQRARVALLRALLAQPKALLLDEPFSRLDV 167
>gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 329
Score = 40.5 bits (94), Expect = 3e-04
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 9 GPGHPDPNSRRVV-KVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRAD 67
GP + N R+++ K+ A L + + G +LSGGQ+ R+ +ARA+ +
Sbjct: 186 GPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPE 245
Query: 68 VYLLDDPLSAVD 79
V L+D+P SA+D
Sbjct: 246 VLLMDEPTSALD 257
>gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein;
Provisional.
Length = 252
Score = 40.1 bits (94), Expect = 3e-04
Identities = 16/37 (43%), Positives = 24/37 (64%)
Query: 43 DKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVD 79
D + LSGGQ+ R+ +AR + + LLD+P SA+D
Sbjct: 144 DSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALD 180
>gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 40.4 bits (94), Expect = 3e-04
Identities = 18/33 (54%), Positives = 24/33 (72%)
Query: 47 SLSGGQRARISLARAVYKRADVYLLDDPLSAVD 79
+ SGGQ+ RI +ARA+ R V LLD+P SA+D
Sbjct: 147 AFSGGQQQRICIARALAVRPKVVLLDEPTSALD 179
>gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system,
ATPase component [Amino acid transport and metabolism].
Length = 386
Score = 40.4 bits (95), Expect = 3e-04
Identities = 15/32 (46%), Positives = 22/32 (68%)
Query: 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVD 79
LSGG + R+ LARA+ D+ L+D+ SA+D
Sbjct: 165 LSGGMQQRVGLARALANDPDILLMDEAFSALD 196
>gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein;
Provisional.
Length = 253
Score = 40.1 bits (94), Expect = 3e-04
Identities = 18/43 (41%), Positives = 29/43 (67%), Gaps = 2/43 (4%)
Query: 37 DRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVD 79
DR + + + LSGGQ+ R+ +ARA+ +V L+D+P SA+D
Sbjct: 141 DR--LHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALD 181
>gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding
protein. Phosphonates are a class of
phosphorus-containing organic compound with a stable
direct C-P bond rather than a C-O-P linkage. A number of
bacterial species have operons, typically about 14 genes
in size, with genes for ATP-dependent transport of
phosphonates, degradation, and regulation of the
expression of the system. Members of this protein family
are the ATP-binding cassette component of tripartite ABC
transporters of phosphonates [Transport and binding
proteins, Anions].
Length = 243
Score = 40.0 bits (94), Expect = 3e-04
Identities = 14/32 (43%), Positives = 27/32 (84%)
Query: 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVD 79
LSGGQ+ R+++ARA+ ++ D+ L D+P++++D
Sbjct: 146 LSGGQQQRVAIARALAQQPDLILADEPIASLD 177
>gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 259
Score = 40.0 bits (93), Expect = 3e-04
Identities = 35/134 (26%), Positives = 55/134 (41%), Gaps = 40/134 (29%)
Query: 45 GVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSR 104
+ LSGGQ+ R+ +ARA+ + V L+D+P SA+D + E+ I L +
Sbjct: 148 ALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDP-IATMKVEELIHSLRS-------- 198
Query: 105 WGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHV-DHVMLLEK-----GSVE 158
E T+ ++TH +Q T V D G +
Sbjct: 199 -------------------------ELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMV 233
Query: 159 AFGTTTQLLASGLD 172
FG TTQ+ ++ LD
Sbjct: 234 EFGVTTQIFSNPLD 247
>gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 253
Score = 40.2 bits (94), Expect = 3e-04
Identities = 19/50 (38%), Positives = 31/50 (62%), Gaps = 4/50 (8%)
Query: 43 DKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVD----AHVGKHLFE 88
D +LSGGQR R+ +ARA+ + + L+D+P + +D A + + LFE
Sbjct: 145 DYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFE 194
>gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain
of the thiamine transport system. Part of the
binding-protein-dependent transport system tbpA-thiPQ
for thiamine and TPP. Probably responsible for the
translocation of thiamine across the membrane. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 211
Score = 39.8 bits (93), Expect = 3e-04
Identities = 16/32 (50%), Positives = 24/32 (75%)
Query: 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVD 79
LSGG+R R++LAR + + V LLD+P +A+D
Sbjct: 129 LSGGERQRVALARVLVRDKPVLLLDEPFAALD 160
>gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the
transporters involved in export of lipoprotein and
macrolide, and cell division protein. This family is
comprised of MJ0796 ATP-binding cassette,
macrolide-specific ABC-type efflux carrier (MacAB), and
proteins involved in cell division (FtsE), and release
of lipoproteins from the cytoplasmic membrane (LolCDE).
They are clustered together phylogenetically. MacAB is
an exporter that confers resistance to macrolides, while
the LolCDE system is not a transporter at all. An FtsE
null mutants showed filamentous growth and appeared
viable on high salt medium only, indicating a role for
FtsE in cell division and/or salt transport. The LolCDE
complex catalyzes the release of lipoproteins from the
cytoplasmic membrane prior to their targeting to the
outer membrane.
Length = 218
Score = 39.8 bits (94), Expect = 3e-04
Identities = 16/41 (39%), Positives = 26/41 (63%)
Query: 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFE 88
LSGGQ+ R+++ARA+ + L D+P +D+ GK + E
Sbjct: 141 LSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVME 181
>gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional.
Length = 718
Score = 40.6 bits (95), Expect = 3e-04
Identities = 17/35 (48%), Positives = 25/35 (71%)
Query: 47 SLSGGQRARISLARAVYKRADVYLLDDPLSAVDAH 81
+ SGG R RI+LARA++ D+ LLD+P + +D H
Sbjct: 344 TFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLH 378
Score = 35.6 bits (82), Expect = 0.017
Identities = 16/39 (41%), Positives = 27/39 (69%), Gaps = 5/39 (12%)
Query: 47 SLSGGQRARISLARAVYKRADVYLLDDP-----LSAVDA 80
+LSGGQ++R++ A+ +K+ + LLD+P L AV+A
Sbjct: 627 TLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEA 665
>gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 320
Score = 40.2 bits (94), Expect = 4e-04
Identities = 26/120 (21%), Positives = 54/120 (45%), Gaps = 34/120 (28%)
Query: 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGR 107
LSGGQ+ R+++A + + ++ + D+P + +D P+
Sbjct: 177 LSGGQKRRVAIAGILAIQPEILIFDEPTAGLD-------------------PK------- 210
Query: 108 SFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHV-DHVMLLEKGSVEAFGTTTQL 166
G + L+ + KTV +ITH ++++ V D V++++KG + GT ++
Sbjct: 211 -------GEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKILKTGTPYEI 263
>gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 305
Score = 39.8 bits (93), Expect = 4e-04
Identities = 16/39 (41%), Positives = 26/39 (66%)
Query: 41 VGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVD 79
+ D + LSGGQ+ R+ +AR + +V L+D+P SA+D
Sbjct: 194 LDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALD 232
>gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase
component [Amino acid transport and metabolism].
Length = 240
Score = 39.8 bits (94), Expect = 4e-04
Identities = 28/126 (22%), Positives = 53/126 (42%), Gaps = 38/126 (30%)
Query: 47 SLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWG 106
LSGGQ+ R+++ARA+ V L D+P SA+D +
Sbjct: 136 QLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPEL------------------------ 171
Query: 107 RSFFGSALGVRGALSLVRTSFLKE--KTVMLITHQIQYLTHV-DHVMLLEKGSVEAFGTT 163
V L +++ L E T++++TH++ + V D V+ +++G + G
Sbjct: 172 ---------VGEVLDVMKD--LAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPP 220
Query: 164 TQLLAS 169
+ +
Sbjct: 221 EEFFDN 226
>gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 258
Score = 39.6 bits (92), Expect = 5e-04
Identities = 30/126 (23%), Positives = 51/126 (40%), Gaps = 35/126 (27%)
Query: 45 GVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSR 104
+SLSGGQ+ R+ +AR + + + L D+P SA+D + ED I L
Sbjct: 152 ALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDP-ISTARIEDLIMNLK--------- 201
Query: 105 WGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHV-DHVMLLEKGSVEAFGTT 163
K+ T++++TH +Q + D+ G + FG T
Sbjct: 202 ------------------------KDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQT 237
Query: 164 TQLLAS 169
Q+ +
Sbjct: 238 RQIFHN 243
>gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the
sulfonylurea receptor SUR. The SUR domain 2. The
sulfonylurea receptor SUR is an ATP binding cassette
(ABC) protein of the ABCC/MRP family. Unlike other ABC
proteins, it has no intrinsic transport function,
neither active nor passive, but associates with the
potassium channel proteins Kir6.1 or Kir6.2 to form the
ATP-sensitive potassium (K(ATP)) channel. Within the
channel complex, SUR serves as a regulatory subunit that
fine-tunes the gating of Kir6.x in response to
alterations in cellular metabolism. It constitutes a
major pharmaceutical target as it binds numerous drugs,
K(ATP) channel openers and blockers, capable of up- or
down-regulating channel activity.
Length = 257
Score = 39.5 bits (92), Expect = 5e-04
Identities = 31/148 (20%), Positives = 59/148 (39%), Gaps = 34/148 (22%)
Query: 21 VKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDA 80
+++ LK LP G +V + G + S GQR LARA +++ + ++D+ +++D
Sbjct: 130 LEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASID- 188
Query: 81 HVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQI 140
+ L V + ++TV+ I H++
Sbjct: 189 ---------------------------------MATENILQKVVMTAFADRTVVTIAHRV 215
Query: 141 QYLTHVDHVMLLEKGSVEAFGTTTQLLA 168
+ D V++L +G + T LLA
Sbjct: 216 STILDADLVLVLSRGILVECDTPENLLA 243
>gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of
peroxisomal transporter, subfamily D. Peroxisomal
ATP-binding cassette transporter (Pat) is involved in
the import of very long-chain fatty acids (VLCFA) into
the peroxisome. The peroxisomal membrane forms a
permeability barrier for a wide variety of metabolites
required for and formed during fatty acid
beta-oxidation. To communicate with the cytoplasm and
mitochondria, peroxisomes need dedicated proteins to
transport such hydrophilic molecules across their
membranes. X-linked adrenoleukodystrophy (X-ALD) is
caused by mutations in the ALD gene, which encodes ALDP
(adrenoleukodystrophy protein ), a peroxisomal integral
membrane protein that is a member of the ATP-binding
cassette (ABC) transporter protein family. The disease
is characterized by a striking and unpredictable
variation in phenotypic expression. Phenotypes include
the rapidly progressive childhood cerebral form (CCALD),
the milder adult form, adrenomyeloneuropathy (AMN), and
variants without neurologic involvement (i.e.
asymptomatic).
Length = 166
Score = 38.7 bits (91), Expect = 5e-04
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVD 79
LSGG++ R++ AR + + LD+ SA+D
Sbjct: 92 LSGGEQQRLAFARLLLHKPKFVFLDEATSALD 123
>gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA
family. Members of this protein family are found mostly
in the Cyanobacteria, but also in the Planctomycetes.
Cyanobacterial examples are involved in heterocyst
formation, by which some fraction of members of the
colony undergo a developmental change and become capable
of nitrogen fixation. The DevBCA proteins are thought
export of either heterocyst-specific glycolipids or an
enzyme essential for formation of the laminated layer
found in heterocysts.
Length = 220
Score = 39.2 bits (92), Expect = 5e-04
Identities = 17/41 (41%), Positives = 29/41 (70%)
Query: 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFE 88
LSGGQ+ R+++ARA+ R + L D+P +A+D+ G+ + E
Sbjct: 142 LSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVE 182
>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular
activities. AAA - ATPases associated with a variety of
cellular activities. This profile/alignment only detects
a fraction of this vast family. The poorly conserved
N-terminal helix is missing from the alignment.
Length = 148
Score = 38.5 bits (89), Expect = 6e-04
Identities = 23/91 (25%), Positives = 34/91 (37%)
Query: 14 DPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDD 73
P V+ + L +VG K S SG R R++LA A + DV +LD+
Sbjct: 27 GPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDVLILDE 86
Query: 74 PLSAVDAHVGKHLFEDCITGLHTGVPRFDSR 104
S +DA L L + +
Sbjct: 87 ITSLLDAEQEALLLLLEELRLLLLLKSEKNL 117
>gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter
subunit; Provisional.
Length = 262
Score = 39.2 bits (91), Expect = 6e-04
Identities = 15/33 (45%), Positives = 28/33 (84%)
Query: 47 SLSGGQRARISLARAVYKRADVYLLDDPLSAVD 79
+LSGGQ+ R+++ARA+ ++A V L D+P++++D
Sbjct: 152 TLSGGQQQRVAIARALMQQAKVILADEPIASLD 184
>gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding
protein. Members of this protein family are the
ATP-binding subunit of a three-protein transporter. This
family belongs, more broadly, to the family of proline
and glycine-betaine transporters, but members have been
identified by direct characterization and by
bioinformatic means as choline transporters. Many
species have several closely-related members of this
family, probably with variable abilities to act
additionally on related quaternary amines [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 382
Score = 39.4 bits (92), Expect = 6e-04
Identities = 16/32 (50%), Positives = 22/32 (68%)
Query: 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVD 79
LSGG + R+ LARA A + L+D+P SA+D
Sbjct: 165 LSGGMQQRVGLARAFATEAPILLMDEPFSALD 196
>gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component
[Amino acid transport and metabolism].
Length = 242
Score = 39.0 bits (91), Expect = 7e-04
Identities = 15/35 (42%), Positives = 24/35 (68%)
Query: 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHV 82
LSGGQ+ R+++ARA+ V L D+P +A+D +
Sbjct: 142 LSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEI 176
>gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein
YbbL; Provisional.
Length = 225
Score = 38.9 bits (91), Expect = 7e-04
Identities = 26/84 (30%), Positives = 36/84 (42%), Gaps = 12/84 (14%)
Query: 12 HPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVS-LSGGQRARISLARAVYKRADVYL 70
PDP +D + D L K ++ LSGG++ RISL R + V L
Sbjct: 111 QPDPA--------IFLDDLERFALPDTIL--TKNIAELSGGEKQRISLIRNLQFMPKVLL 160
Query: 71 LDDPLSAVDAHVGKHLFEDCITGL 94
LD+ SA+D KH + I
Sbjct: 161 LDEITSALDES-NKHNVNEIIHRY 183
>gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D.
This model describes the ATP binding subunits of nitrate
transport in bacteria and archaea. This protein belongs
to the ATP-binding cassette (ABC) superfamily. It is
thought that the two subunits encoded by ntrC and ntrD
form the binding surface for interaction with ATP. This
model is restricted in identifying ATP binding subunit
associated with the nitrate transport. Nitrate
assimilation is aided by other proteins derived from the
operon which among others include products of ntrA - a
regulatory protein; ntrB - a hydropbobic transmembrane
permease and narB - a reductase [Transport and binding
proteins, Anions, Transport and binding proteins,
Other].
Length = 230
Score = 39.0 bits (91), Expect = 7e-04
Identities = 17/33 (51%), Positives = 24/33 (72%)
Query: 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVDA 80
LSGG + R+++ARA+ R V LLD+P A+DA
Sbjct: 115 LSGGMKQRVAIARALSIRPKVLLLDEPFGALDA 147
>gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog
[General function prediction only].
Length = 591
Score = 39.6 bits (93), Expect = 7e-04
Identities = 15/32 (46%), Positives = 25/32 (78%)
Query: 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVD 79
LSGG+ R+++A A+ + AD+YLLD+P + +D
Sbjct: 456 LSGGELQRVAIAAALSREADLYLLDEPSAYLD 487
Score = 35.4 bits (82), Expect = 0.017
Identities = 18/38 (47%), Positives = 27/38 (71%), Gaps = 1/38 (2%)
Query: 43 DKGVS-LSGGQRARISLARAVYKRADVYLLDDPLSAVD 79
D+ VS LSGG+ R+++A A+ + ADVY D+P S +D
Sbjct: 208 DRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLD 245
>gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed.
Length = 402
Score = 39.4 bits (92), Expect = 7e-04
Identities = 17/35 (48%), Positives = 26/35 (74%)
Query: 47 SLSGGQRARISLARAVYKRADVYLLDDPLSAVDAH 81
SLSGG+R R+ LARA+ + V LLD+P +++D +
Sbjct: 139 SLSGGERQRVLLARALAQATPVLLLDEPTASLDIN 173
>gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 290
Score = 39.2 bits (92), Expect = 7e-04
Identities = 33/138 (23%), Positives = 57/138 (41%), Gaps = 38/138 (27%)
Query: 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGR 107
LSGGQ R+++A + +V +LD+P + +D G+ + LH
Sbjct: 146 LSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPK-GRKEMMEMFYKLH------------ 192
Query: 108 SFFGSALGVRGALSLVRTSFLKEK--TVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTTT 164
KEK T +L+TH ++ D ++++ KG+V GT
Sbjct: 193 ---------------------KEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPR 231
Query: 165 QLLASGLDFTQL-LDAPE 181
++ A + + LD PE
Sbjct: 232 EIFADPDELEAIGLDLPE 249
>gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding
subunit; Provisional.
Length = 400
Score = 39.2 bits (91), Expect = 8e-04
Identities = 32/153 (20%), Positives = 62/153 (40%), Gaps = 44/153 (28%)
Query: 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGR 107
LSGG R R+ LARA+ D+ L+D+ SA+D + + ++
Sbjct: 165 LSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDE------------------ 206
Query: 108 SFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHV-DHVMLLEKGSVEAFGTTTQL 166
LV+ ++T++ I+H + + D + +++ G V GT ++
Sbjct: 207 --------------LVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEI 252
Query: 167 LAS-----------GLDFTQLLDAPEEEDKAEN 188
L + G+D +Q+ A + + N
Sbjct: 253 LNNPANDYVRTFFRGVDISQVFSAKDIARRTPN 285
>gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 207
Score = 38.7 bits (91), Expect = 8e-04
Identities = 17/46 (36%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITG 93
LS GQ+ R++LAR + +++LD+P +A+DA LF + I
Sbjct: 128 LSAGQKRRVALARLLVSNRPIWILDEPTAALDAA-AVALFAELIRA 172
>gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA. This
model describes the cyt c biogenesis protein encoded by
ccmA in bacteria. An exception is, an arabidopsis
protein. Quite likely this is encoded by an organelle.
Bacterial c-type cytocromes are located on the
periplasmic side of the cytoplasmic membrane. Several
gene products encoded in a locus designated as 'ccm' are
implicated in the transport and assembly of the
functional cytochrome C. This cluster includes genes:
ccmA;B;C;D;E;F;G and H. The posttranslational pathway
includes the transport of heme moiety, the secretion of
the apoprotein and the covalent attachment of the heme
with the apoprotein. The proteins ccmA and B represent
an ABC transporter; ccmC and D participate in heme
transfer to ccmE, which function as a periplasmic heme
chaperone. The presence of ccmF, G and H is suggested to
be obligatory for the final functional assembly of
cytochrome c [Protein fate, Protein and peptide
secretion and trafficking, Transport and binding
proteins, Other].
Length = 198
Score = 38.5 bits (90), Expect = 8e-04
Identities = 15/34 (44%), Positives = 24/34 (70%)
Query: 47 SLSGGQRARISLARAVYKRADVYLLDDPLSAVDA 80
LS GQ+ R++LAR RA +++LD+P +A+D
Sbjct: 127 QLSAGQQRRLALARLWLSRAPLWILDEPTTALDK 160
>gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of
CFTR,subfamily C. The cystic fibrosis transmembrane
regulator (CFTR), the product of the gene mutated in
patients with cystic fibrosis, has adapted the ABC
transporter structural motif to form a tightly regulated
anion channel at the apical surface of many epithelia.
Use of the term assembly of a functional ion channel
implies the coming together of subunits or at least
smaller not-yet functional components of the active
whole. In fact, on the basis of current knowledge only
the CFTR polypeptide itself is required to form an ATP-
and protein kinase A-dependent low-conductance chloride
channel of the type present in the apical membrane of
many epithelial cells. CFTR displays the typical
organization (IM-ABC)2 and carries a characteristic
hydrophilic R-domain that separates IM1-ABC1 from
IM2-ABC2.
Length = 275
Score = 38.7 bits (90), Expect = 0.001
Identities = 31/94 (32%), Positives = 41/94 (43%), Gaps = 10/94 (10%)
Query: 5 LAPMGPGHPDPNSRRVVKVCALKEDFAQLPSG-DRTLVGDKGVSLSGGQRARISLARAVY 63
L P G D +V + LK Q P D LV D G LS G + + LAR+V
Sbjct: 97 LDPYGK-WSDEEIWKVAEEVGLKSVIEQFPGQLDFVLV-DGGCVLSHGHKQLMCLARSVL 154
Query: 64 KRADVYLLDDPLSAVDA-------HVGKHLFEDC 90
+A + LLD+P + +D K F DC
Sbjct: 155 SKAKILLLDEPSAHLDPITYQVIRKTLKQAFADC 188
>gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI;
Provisional.
Length = 340
Score = 38.7 bits (90), Expect = 0.001
Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 5/58 (8%)
Query: 29 DFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHL 86
+FA+L S V D LSGG + R++LARA+ + +LD+P + +D H +HL
Sbjct: 158 EFARLESKADARVSD----LSGGMKRRLTLARALINDPQLLILDEPTTGLDPH-ARHL 210
>gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase
L inhibitor. The ABC ATPase RNase L inhibitor (RLI) is
a key enzyme in ribosomal biogenesis, formation of
translation preinitiation complexes, and assembly of HIV
capsids. RLI's are not transport proteins, and thus
cluster with a group of soluble proteins that lack the
transmembrane components commonly found in other members
of the family. Structurally, RLI's have an N-terminal
Fe-S domain and two nucleotide-binding domains, which
are arranged to form two composite active sites in their
interface cleft. RLI is one of the most conserved
enzymes between archaea and eukaryotes with a sequence
identity more than 48%. The high degree of evolutionary
conservation suggests that RLI performs a central role
in archaeal and eukaryotic physiology.
Length = 177
Score = 38.3 bits (89), Expect = 0.001
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 7/50 (14%)
Query: 46 VSLSGGQRARISLARAVYKRADVYLLDDPLSAVD-------AHVGKHLFE 88
+ LSGG+ R+++A A+ + A YL D+P + +D A + L E
Sbjct: 70 IDLSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSE 119
>gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the
osmoprotectant proline/glycine betaine uptake system.
This family comprises the glycine betaine/L-proline ATP
binding subunit in bacteria and its equivalents in
archaea. This transport system belong to the larger
ATP-Binding Cassette (ABC) transporter superfamily. The
characteristic feature of these transporters is the
obligatory coupling of ATP hydrolysis to substrate
translocation. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 269
Score = 38.4 bits (90), Expect = 0.001
Identities = 15/32 (46%), Positives = 22/32 (68%)
Query: 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVD 79
LSGG + R+ LARA+ D+ L+D+ SA+D
Sbjct: 161 LSGGMQQRVGLARALAVDPDILLMDEAFSALD 192
>gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 254
Score = 38.5 bits (89), Expect = 0.001
Identities = 16/35 (45%), Positives = 25/35 (71%)
Query: 45 GVSLSGGQRARISLARAVYKRADVYLLDDPLSAVD 79
+SLSGGQ+ R+ +AR + +V L+D+P SA+D
Sbjct: 148 ALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALD 182
>gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component
[Carbohydrate transport and metabolism].
Length = 500
Score = 38.6 bits (91), Expect = 0.001
Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
Query: 38 RTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFE 88
TLVGD LS QR + +ARA+ A V +LD+P +A+ + LF+
Sbjct: 140 DTLVGD----LSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFD 186
Score = 32.1 bits (74), Expect = 0.17
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 47 SLSGGQRARISLARAVYKRADVYLLDDPLSAVD 79
+LSGG + ++ LAR + V +LD+P +D
Sbjct: 401 TLSGGNQQKVVLARWLATDPKVLILDEPTRGID 433
>gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding
protein; Provisional.
Length = 241
Score = 38.3 bits (89), Expect = 0.001
Identities = 17/35 (48%), Positives = 23/35 (65%)
Query: 45 GVSLSGGQRARISLARAVYKRADVYLLDDPLSAVD 79
G SLSGG+R R+ +ARA+ LLD+P + VD
Sbjct: 135 GQSLSGGERRRVEIARALAANPKFILLDEPFAGVD 169
>gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit;
Provisional.
Length = 242
Score = 38.1 bits (89), Expect = 0.001
Identities = 15/32 (46%), Positives = 23/32 (71%)
Query: 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVD 79
LSGGQ+ R+++ARA+ V L D+P +A+D
Sbjct: 142 LSGGQQQRVAIARALMMEPQVLLFDEPTAALD 173
>gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 38.1 bits (88), Expect = 0.001
Identities = 15/32 (46%), Positives = 24/32 (75%)
Query: 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVD 79
LSGGQ+ R+ +AR + + +V L+D+P SA+D
Sbjct: 149 LSGGQQQRLCIARTIAVKPEVILMDEPASALD 180
>gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 38.1 bits (88), Expect = 0.001
Identities = 16/35 (45%), Positives = 26/35 (74%)
Query: 45 GVSLSGGQRARISLARAVYKRADVYLLDDPLSAVD 79
G++LSGGQ+ R+ +AR + +V L+D+P SA+D
Sbjct: 145 GLALSGGQQQRLCIARVLAIEPEVILMDEPCSALD 179
>gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional.
Length = 306
Score = 38.2 bits (89), Expect = 0.001
Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 5/58 (8%)
Query: 29 DFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHL 86
+FA+L + VG+ LSGG + R++LARA+ DV +LD+P + +D +HL
Sbjct: 124 EFAKLENKADAKVGE----LSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQ-ARHL 176
>gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 246
Score = 38.1 bits (88), Expect = 0.002
Identities = 16/35 (45%), Positives = 26/35 (74%)
Query: 45 GVSLSGGQRARISLARAVYKRADVYLLDDPLSAVD 79
++LSGGQ+ R+ +ARA+ + + LLD+P SA+D
Sbjct: 140 ALALSGGQQQRLCIARALAIKPKLLLLDEPTSALD 174
>gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter,
ATP-binding subunit. This protein family is the
ATP-binding cassette subunit of binding
protein-dependent ABC transporter complex that strictly
co-occurs with TIGR03769. TIGRFAMs model TIGR03769
describes a protein domain that occurs singly or as one
of up to three repeats in proteins of a number of
Actinobacteria, including Propionibacterium acnes
KPA171202. The TIGR03769 domain occurs both in an
adjacent gene for the substrate-binding protein and in
additional (often nearby) proteins, often with
LPXTG-like sortase recognition signals. Homologous
ATP-binding subunits outside the scope of this family
include manganese transporter MntA in Synechocystis sp.
PCC 6803 and chelated iron transporter subunits. The
function of this transporter complex is unknown
[Transport and binding proteins, Unknown substrate].
Length = 223
Score = 37.9 bits (88), Expect = 0.002
Identities = 17/32 (53%), Positives = 23/32 (71%)
Query: 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVD 79
LSGGQR R+ +ARA+ R V LLD+P + +D
Sbjct: 114 LSGGQRQRVLVARALATRPSVLLLDEPFTGLD 145
>gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation
protein NodI. This protein is required for normal
nodulation by nitrogen-fixing root nodule bacteria such
as Mesorhizobium loti. It is a member of the family of
ABC transporter ATP binding proteins and works with NodJ
to export a nodulation signal molecule. This model does
not recognize the highly divergent NodI from
Azorhizobium caulinodans [Cellular processes, Other,
Transport and binding proteins, Other].
Length = 303
Score = 38.0 bits (88), Expect = 0.002
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 5/58 (8%)
Query: 29 DFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHL 86
+FA+L S V LSGG + R++LARA+ + +LD+P + +D H +HL
Sbjct: 121 EFARLESKADVRVAL----LSGGMKRRLTLARALINDPQLLILDEPTTGLDPH-ARHL 173
>gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter,
ATP-binding protein. Members of this family are the
ATP-binding protein of a conserved four gene ABC
transporter operon found next to ectoine unilization
operons and ectoine biosynthesis operons. Ectoine is a
compatible solute that protects enzymes from high
osmolarity. It is released by some species in response
to hypoosmotic shock, and it is taken up by a number of
bacteria as a compatible solute or for consumption. This
family shows strong sequence similiarity to a number of
amino acid ABC transporter ATP-binding proteins.
Length = 252
Score = 37.9 bits (88), Expect = 0.002
Identities = 16/34 (47%), Positives = 23/34 (67%)
Query: 46 VSLSGGQRARISLARAVYKRADVYLLDDPLSAVD 79
LSGGQ+ R+++ARA+ R V L D+ SA+D
Sbjct: 145 AQLSGGQQQRVAIARALAMRPKVMLFDEVTSALD 178
>gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase
component/photorepair protein PhrA [Inorganic ion
transport and metabolism].
Length = 257
Score = 37.7 bits (88), Expect = 0.002
Identities = 25/118 (21%), Positives = 45/118 (38%), Gaps = 32/118 (27%)
Query: 47 SLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWG 106
SLS G++ R+ +ARA+ K ++ +LD+P +D +
Sbjct: 171 SLSQGEQRRVLIARALVKDPELLILDEPAQGLDLI-AREQL------------------- 210
Query: 107 RSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTH-VDHVMLLEKGSVEAFGTT 163
+ GA +L+ +TH + + H +LL++G V A G
Sbjct: 211 LNRLEELAASPGAPALL-----------FVTHHAEEIPPCFTHRLLLKEGEVVAQGKL 257
>gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding
protein. Members of this family are the ATP-binding
protein of the D-methionine ABC transporter complex.
Known members belong to the Proteobacteria.
Length = 343
Score = 37.9 bits (88), Expect = 0.002
Identities = 39/145 (26%), Positives = 62/145 (42%), Gaps = 41/145 (28%)
Query: 47 SLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWG 106
+LSGGQ+ R+++ARA+ V L D+ SA+D + + E L + R
Sbjct: 140 NLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILE-----LLKEINR------ 188
Query: 107 RSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHV-DHVM------LLEKGSV-E 158
LG+ T++LITH++ + + D V L+E+G+V E
Sbjct: 189 ------RLGL---------------TILLITHEMDVVKRICDCVAVISNGELIEQGTVSE 227
Query: 159 AFGT-TTQLLASGLDFTQLLDAPEE 182
F T L + T L PE+
Sbjct: 228 IFSHPKTPLAQKFIRSTLHLSIPED 252
>gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis
ATP-binding export protein. CcmA, the ATP-binding
component of the bacterial CcmAB transporter. The CCM
family is involved in bacterial cytochrome c biogenesis.
Cytochrome c maturation in E. coli requires the ccm
operon, which encodes eight membrane proteins
(CcmABCDEFGH). CcmE is a periplasmic heme chaperon that
binds heme covalently and transfers it onto
apocytochrome c in the presence of CcmF, CcmG, and CcmH.
The CcmAB proteins represent an ABC transporter and the
CcmCD proteins participate in heme transfer to CcmE.
Length = 201
Score = 37.1 bits (86), Expect = 0.002
Identities = 13/34 (38%), Positives = 23/34 (67%)
Query: 47 SLSGGQRARISLARAVYKRADVYLLDDPLSAVDA 80
LS GQ+ R++LAR + +++LD+P +A+D
Sbjct: 125 QLSAGQQRRVALARLLLSGRPLWILDEPTTALDK 158
>gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding
cassette component of cobalt transport system. Domain
II of the ABC component of a cobalt transport family
found in bacteria, archaea, and eukaryota. The
transition metal cobalt is an essential component of
many enzymes and must be transported into cells in
appropriate amounts when needed. The CbiMNQO family ABC
transport system is involved in cobalt transport in
association with the cobalamin (vitamin B12)
biosynthetic pathways. Most cobalt (Cbi) transport
systems possess a separate CbiN component, the
cobalt-binding periplasmic protein, and they are encoded
by the conserved gene cluster cbiMNQO. Both the CbiM and
CbiQ proteins are integral cytoplasmic membrane
proteins, and the CbiO protein has the linker peptide
and the Walker A and B motifs commonly found in the
ATPase components of the ABC-type transport systems.
Length = 205
Score = 37.2 bits (87), Expect = 0.002
Identities = 29/112 (25%), Positives = 49/112 (43%), Gaps = 34/112 (30%)
Query: 47 SLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWG 106
SLSGGQ+ R+++A A+ D+ + D+P S +D + + E
Sbjct: 126 SLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGE------------------ 167
Query: 107 RSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHV-DHVMLLEKGSV 157
L+R + K V++ITH ++L V D V+LL G++
Sbjct: 168 ---------------LIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAI 204
>gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit;
Provisional.
Length = 255
Score = 37.3 bits (87), Expect = 0.002
Identities = 34/126 (26%), Positives = 53/126 (42%), Gaps = 34/126 (26%)
Query: 47 SLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWG 106
LSGGQR R LA + + V LLD+P + +D + H E
Sbjct: 138 DLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDIN---HQVE------------------ 176
Query: 107 RSFFGSALGVRGALSLVRTSFLKEKTVMLITHQI-QYLTHVDHVMLLEKGSVEAFGTTTQ 165
+ L+R + KTV+ + H + Q + DH+++L G V A GT +
Sbjct: 177 ------------LMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEE 224
Query: 166 LLASGL 171
++ GL
Sbjct: 225 VMTPGL 230
>gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of
polysaccharide transport system. The KpsT/Wzt ABC
transporter subfamily is involved in extracellular
polysaccharide export. Among the variety of
membrane-linked or extracellular polysaccharides
excreted by bacteria, only capsular polysaccharides,
lipopolysaccharides, and teichoic acids have been shown
to be exported by ABC transporters. A typical system is
made of a conserved integral membrane and an ABC. In
addition to these proteins, capsular polysaccharide
exporter systems require two 'accessory' proteins to
perform their function: a periplasmic (E.coli) or a
lipid-anchored outer membrane protein called OMA
(Neisseria meningitidis and Haemophilus influenza) and a
cytoplasmic membrane protein MPA2.
Length = 224
Score = 37.1 bits (87), Expect = 0.003
Identities = 33/137 (24%), Positives = 52/137 (37%), Gaps = 42/137 (30%)
Query: 28 EDFAQLPSGDRTLVGDKGVS-LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHL 86
+F++L GD D V S G +AR++ A A D+ L+D+ L+ DA
Sbjct: 127 IEFSEL--GD---FIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAA----- 176
Query: 87 F-EDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTH 145
F E C R + KTV+L++H +
Sbjct: 177 FQEKCQR-------RLRELLKQG----------------------KTVILVSHDPSSIKR 207
Query: 146 V-DHVMLLEKGSVEAFG 161
+ D ++LEKG + G
Sbjct: 208 LCDRALVLEKGKIRFDG 224
>gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 37.3 bits (86), Expect = 0.003
Identities = 16/33 (48%), Positives = 24/33 (72%)
Query: 47 SLSGGQRARISLARAVYKRADVYLLDDPLSAVD 79
+LSGGQ+ R+ +ARA+ V L+D+P SA+D
Sbjct: 146 ALSGGQQQRLCIARAMAVSPSVLLMDEPASALD 178
>gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC
transporter, lactococcin 972 group. A gene pair with a
fairly wide distribution consists of a polypeptide
related to the lactococcin 972 (see TIGR01653) and
multiple-membrane-spanning putative immunity protein
(see TIGR01654). This model represents a small clade
within the ABC transporters that regularly are found
adjacent to these bacteriocin system gene pairs and are
likely serve as export proteins [Cellular processes,
Toxin production and resistance, Transport and binding
proteins, Unknown substrate].
Length = 206
Score = 37.2 bits (87), Expect = 0.003
Identities = 14/33 (42%), Positives = 23/33 (69%)
Query: 47 SLSGGQRARISLARAVYKRADVYLLDDPLSAVD 79
LSGG++ R++LARA+ K + L D+P ++D
Sbjct: 134 ELSGGEQQRVALARAILKPPPLILADEPTGSLD 166
>gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit.
This model describes the ATP binding subunit of the
multisubunit cobalt transporter in bacteria and its
equivalents in archaea. The model is restricted to ATP
subunit that is a part of the cobalt transporter, which
belongs to the ABC transporter superfamily (ATP Binding
Cassette). The model excludes ATP binding subunit that
are associated with other transporters belonging to ABC
transporter superfamily. This superfamily includes two
groups, one which catalyze the uptake of small
molecules, including ions from the external milieu and
the other group which is engaged in the efflux of small
molecular weight compounds and ions from within the
cell. Energy derived from the hydrolysis of ATP drive
the both the process of uptake and efflux [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 190
Score = 37.0 bits (86), Expect = 0.003
Identities = 16/32 (50%), Positives = 24/32 (75%)
Query: 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVD 79
LSGG++ R+++A AV R DV LLD+P + +D
Sbjct: 128 LSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLD 159
>gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 204
Score = 37.1 bits (87), Expect = 0.003
Identities = 15/35 (42%), Positives = 24/35 (68%)
Query: 47 SLSGGQRARISLARAVYKRADVYLLDDPLSAVDAH 81
LS GQ+ R++LAR RA +++LD+P +A+D
Sbjct: 129 QLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQ 163
>gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid
transporters, subfamily A. The ABCA subfamily mediates
the transport of a variety of lipid compounds. Mutations
of members of ABCA subfamily are associated with human
genetic diseases, such as, familial high-density
lipoprotein (HDL) deficiency, neonatal surfactant
deficiency, degenerative retinopathies, and congenital
keratinization disorders. The ABCA1 protein is involved
in disorders of cholesterol transport and high-density
lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein
transports vitamin A derivatives in the outer segments
of photoreceptor cells, and therefore, performs a
crucial step in the visual cycle. The ABCA genes are not
present in yeast. However, evolutionary studies of ABCA
genes indicate that they arose as transporters that
subsequently duplicated and that certain sets of ABCA
genes were lost in different eukaryotic lineages.
Length = 220
Score = 37.1 bits (87), Expect = 0.003
Identities = 28/121 (23%), Positives = 48/121 (39%), Gaps = 35/121 (28%)
Query: 47 SLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWG 106
+LSGG + ++SLA A+ V LLD+P S +D + D I
Sbjct: 133 TLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLD-PASRRAIWDLI--------------- 176
Query: 107 RSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHV-DHVMLLEKGSVEAFGTTTQ 165
L VR K ++++L TH + + D + ++ G + G+ +
Sbjct: 177 -------LEVR-----------KGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQE 218
Query: 166 L 166
L
Sbjct: 219 L 219
>gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG
transporter subfamily. The White subfamily represents
ABC transporters homologous to the Drosophila white
gene, which acts as a dimeric importer for eye pigment
precursors. The eye pigmentation of Drosophila is
developed from the synthesis and deposition in the cells
of red pigments, which are synthesized from guanine, and
brown pigments, which are synthesized from tryptophan.
The pigment precursors are encoded by the white, brown,
and scarlet genes, respectively. Evidence from genetic
and biochemical studies suggest that the White and Brown
proteins function as heterodimers to import guanine,
while the White and Scarlet proteins function to import
tryptophan. However, a recent study also suggests that
White may be involved in the transport of a metabolite,
such as 3-hydroxykynurenine, across intracellular
membranes. Mammalian ABC transporters belonging to the
White subfamily (ABCG1, ABCG5, and ABCG8) have been
shown to be involved in the regulation of
lipid-trafficking mechanisms in macrophages,
hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8),
the human homolog of the Drosophila white gene is
induced in monocyte-derived macrophages during
cholesterol influx mediated by acetylated low-density
lipoprotein. It is possible that human ABCG1 forms
heterodimers with several heterologous partners.
Length = 226
Score = 36.9 bits (86), Expect = 0.003
Identities = 18/74 (24%), Positives = 35/74 (47%), Gaps = 6/74 (8%)
Query: 13 PDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLD 72
D ++ V+ L++ + G+ +SGG+R R+S+A + V +LD
Sbjct: 115 SDAIRKKRVEDVLLRD------LALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILD 168
Query: 73 DPLSAVDAHVGKHL 86
+P S +D+ +L
Sbjct: 169 EPTSGLDSFTALNL 182
>gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 282
Score = 37.1 bits (86), Expect = 0.004
Identities = 35/135 (25%), Positives = 50/135 (37%), Gaps = 45/135 (33%)
Query: 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGR 107
LSGGQ+ R+++A + + +LD+ S +D
Sbjct: 144 LSGGQKQRVAIAGILAVEPKIIILDESTSMLDPA-------------------------- 177
Query: 108 SFFGSALGVRGALSLVRTSFLKEK---TVMLITHQIQYLTHVDHVMLLEKGS-------V 157
G L L+R LK+K TV+ ITH I D V++L+ G V
Sbjct: 178 -------GKEQILKLIRK--LKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPV 228
Query: 158 EAFGTTTQLLASGLD 172
E F L GLD
Sbjct: 229 EIFSKVEMLKEIGLD 243
>gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein
YejF; Provisional.
Length = 529
Score = 37.0 bits (86), Expect = 0.004
Identities = 16/40 (40%), Positives = 26/40 (65%)
Query: 49 SGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFE 88
SGGQR RI++ARA+ + + +LD+P S++D V +
Sbjct: 427 SGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILA 466
Score = 32.4 bits (74), Expect = 0.17
Identities = 14/35 (40%), Positives = 24/35 (68%)
Query: 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHV 82
LSGG+R R+ +A A+ R ++ + D+P +A+D V
Sbjct: 157 LSGGERQRVMIAMALLTRPELLIADEPTTALDVSV 191
>gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional.
Length = 590
Score = 37.1 bits (87), Expect = 0.004
Identities = 18/36 (50%), Positives = 26/36 (72%), Gaps = 2/36 (5%)
Query: 43 DKGVS-LSGGQRARISLARAVYKRADVYLLDDPLSA 77
DK V LSGG+ R+++A + + AD+YLLD+P SA
Sbjct: 448 DKNVKDLSGGELQRVAIAACLSRDADLYLLDEP-SA 482
Score = 34.8 bits (81), Expect = 0.024
Identities = 16/38 (42%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
Query: 43 DKGVS-LSGGQRARISLARAVYKRADVYLLDDPLSAVD 79
D+ +S LSGG+ R+++A A+ + AD Y D+P S +D
Sbjct: 207 DRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLD 244
>gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein;
Reviewed.
Length = 240
Score = 36.6 bits (85), Expect = 0.005
Identities = 15/32 (46%), Positives = 24/32 (75%)
Query: 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVD 79
LSGGQ+ R+++ARA+ + + L D+P SA+D
Sbjct: 137 LSGGQQQRVAIARALAVKPKLMLFDEPTSALD 168
>gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 36.5 bits (84), Expect = 0.005
Identities = 17/38 (44%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
Query: 43 DK-GVSLSGGQRARISLARAVYKRADVYLLDDPLSAVD 79
DK + LSGGQ+ R+ +AR + +V L+D+P SA+D
Sbjct: 141 DKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALD 178
>gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding
protein. This model represents LolD, a member of the
ABC transporter family (pfam00005). LolD is involved in
localization of lipoproteins in some bacteria. It works
with a transmembrane protein LolC, which in some species
is a paralogous pair LolC and LolE. Depending on whether
the residue immediately following the new, modified
N-terminal Cys residue, the nascent lipoprotein may be
carried further by LolA and LolB to the outer membrane,
or remain at the inner membrane. The top scoring
proteins excluded by this model include homologs from
the archaeal genus Methanosarcina [Protein fate, Protein
and peptide secretion and trafficking].
Length = 221
Score = 36.2 bits (84), Expect = 0.006
Identities = 15/41 (36%), Positives = 27/41 (65%)
Query: 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFE 88
LSGG+R R+++ARA+ + + L D+P +D + K +F+
Sbjct: 142 LSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFD 182
>gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 261
Score = 36.2 bits (83), Expect = 0.007
Identities = 14/35 (40%), Positives = 23/35 (65%)
Query: 45 GVSLSGGQRARISLARAVYKRADVYLLDDPLSAVD 79
+ LSGGQ+ R+ +ARA+ + V L+D+P +D
Sbjct: 148 ALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLD 182
>gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 263
Score = 36.1 bits (84), Expect = 0.008
Identities = 19/53 (35%), Positives = 28/53 (52%)
Query: 27 KEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVD 79
+E A+L G + D+ LSGGQR +SL A + LLD+ +A+D
Sbjct: 128 RERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALD 180
>gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 35.8 bits (82), Expect = 0.009
Identities = 15/32 (46%), Positives = 24/32 (75%)
Query: 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVD 79
LSGGQ+ R+ +ARA+ ++ L+D+P SA+D
Sbjct: 149 LSGGQQQRLCIARALAVEPEILLMDEPTSALD 180
>gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT)
Family protei. [Transport and binding proteins,
Carbohydrates, organic alcohols, and acids].
Length = 659
Score = 35.9 bits (83), Expect = 0.010
Identities = 16/43 (37%), Positives = 26/43 (60%)
Query: 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDC 90
LSGG++ RI++AR Y + +LD+ SAV V +++ C
Sbjct: 583 LSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLC 625
>gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an
uncharacterized transporter. This subgroup is related
to the subfamily A transporters involved in drug
resistance, nodulation, lipid transport, and bacteriocin
and lantibiotic immunity. In eubacteria and archaea, the
typical organization consists of one ABC and one or two
integral membranes. ABC transporters are a large family
of proteins involved in the transport of a wide variety
of different compounds, like sugars, ions, peptides and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region in addition to the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 210
Score = 35.3 bits (82), Expect = 0.011
Identities = 29/115 (25%), Positives = 45/115 (39%), Gaps = 34/115 (29%)
Query: 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGR 107
LS G + ++ AV ++ +LD+P S +D V L +D I L
Sbjct: 129 LSKGNQQKVQFIAAVIHDPELLILDEPFSGLDP-VNVELLKDVIRELAR----------- 176
Query: 108 SFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHV-DHVMLLEKGSVEAFG 161
KTV+L THQ++ + + D V+LL KG +G
Sbjct: 177 ---------------------AGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210
>gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug
resistance-like subfamily G of ATP-binding cassette
transporters. The pleiotropic drug resistance (PDR) is
a well-described phenomenon occurring in fungi and
shares several similarities with processes in bacteria
and higher eukaryotes. This PDR subfamily represents
domain I of its (ABC-IM)2 organization. ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds including
sugars, ions, peptides, and more complex organic
molecules. The nucleotide-binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 202
Score = 35.3 bits (82), Expect = 0.012
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
Query: 29 DFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDA 80
DFA G+ + G +SGG+R R+S+A A+ RA V D+ +D+
Sbjct: 105 DFALRCKGNEFVRG-----ISGGERKRVSIAEALVSRASVLCWDNSTRGLDS 151
>gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family.
Members of this protein family have two copies of the
ABC transporter ATP-binding cassette, but are found
outside the common ABC transporter operon structure that
features integral membrane permease proteins and
substrate-binding proteins encoded next to the
ATP-binding cassette (ABC domain) protein. The member
protein ChvD from Agrobacterium tumefaciens was
identified as both a candidate to interact with VirB8,
based on yeast two-hybrid analysis, and as an apparent
regulator of VirG. The general function of this protein
family is unknown.
Length = 552
Score = 35.7 bits (83), Expect = 0.013
Identities = 17/40 (42%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Query: 42 GDKGVS-LSGGQRARISLARAVYKRADVYLLDDPLSAVDA 80
D V+ LSGG+R R++L R + + D+ LLD+P + +DA
Sbjct: 155 WDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDA 194
Score = 33.0 bits (76), Expect = 0.094
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 48 LSGGQRARISLARAVYKRADVYLLDDP 74
LSGG+R R+ LA+ + +V LLD+P
Sbjct: 444 LSGGERNRVHLAKTLKSGGNVLLLDEP 470
>gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein;
Provisional.
Length = 638
Score = 35.5 bits (82), Expect = 0.014
Identities = 15/33 (45%), Positives = 24/33 (72%)
Query: 47 SLSGGQRARISLARAVYKRADVYLLDDPLSAVD 79
SGG R R++LA+A+ R+D+ LLD+P + +D
Sbjct: 149 DFSGGWRMRLNLAQALICRSDLLLLDEPTNHLD 181
Score = 34.8 bits (80), Expect = 0.030
Identities = 20/56 (35%), Positives = 35/56 (62%), Gaps = 2/56 (3%)
Query: 36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCI 91
GD+ V ++ SGG++AR+ LA V++R ++ LLD+P + +D + + L E I
Sbjct: 421 GDK--VTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALI 474
>gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE. This
model describes FtsE, a member of the ABC transporter
ATP-binding protein family. This protein, and its
permease partner FtsX, localize to the division site. In
a number of species, the ftsEX gene pair is located next
to FtsY, the signal recognition particle-docking protein
[Cellular processes, Cell division].
Length = 214
Score = 34.9 bits (81), Expect = 0.017
Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 47 SLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGK---HLFE 88
LSGG++ R+++ARA+ + L D+P +D + + L +
Sbjct: 137 QLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLK 181
>gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 214
Score = 34.8 bits (80), Expect = 0.017
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 7/64 (10%)
Query: 23 VCALKEDFA-QLPSGDRTLVGDKGVS------LSGGQRARISLARAVYKRADVYLLDDPL 75
+C L A Q+P +VG G LS GQ+ R++LAR A ++LLD+P
Sbjct: 106 LCGLHGRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPY 165
Query: 76 SAVD 79
+ +D
Sbjct: 166 ANLD 169
>gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter
ATP-binding subunit. This model describes daunorubicin
resistance ABC transporter, ATP binding subunit in
bacteria and archaea. This model is restricted in its
scope to preferentially recognize the ATP binding
subunit associated with effux of the drug, daunorubicin.
This transport system belong to the larger ATP-Binding
Cassette (ABC) transporter superfamily. The
characteristic feature of these transporter is the
obligatory coupling of ATP hydrolysis to substrate
translocation. The minimal configuration of bacterial
ABC transport system: an ATPase or ATP binding subunit;
An integral membrane protein; a hydrophilic polypetpide,
which likely functions as substrate binding protein. In
eukaryotes proteins of similar function include p-gyco
proteins, multidrug resistance protein etc [Transport
and binding proteins, Other].
Length = 302
Score = 35.1 bits (81), Expect = 0.017
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 49 SGGQRARISLARAVYKRADVYLLDDPLSAVDA 80
SGG R R+ +A ++ + DV LD+P + +D
Sbjct: 126 SGGMRRRLDIAASLIHQPDVLFLDEPTTGLDP 157
>gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding
subunit; Provisional.
Length = 265
Score = 35.1 bits (81), Expect = 0.017
Identities = 22/50 (44%), Positives = 30/50 (60%), Gaps = 7/50 (14%)
Query: 39 TLVGDKGV------SLSGGQRARISLARAVYKRADVYLLDDPLSAVD-AH 81
+LVG K + SLSGG+R R +A V + + LLD+P SA+D AH
Sbjct: 133 SLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAH 182
>gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system,
permease and ATPase components [General function
prediction only].
Length = 604
Score = 35.4 bits (82), Expect = 0.019
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVD 79
LSGG++ R++ AR + + LD+ SA+D
Sbjct: 516 LSGGEQQRLAFARLLLHKPKWVFLDEATSALD 547
>gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL.
Members of this family are the PhnL protein of C-P
lyase systems for utilization of phosphonates. These
systems resemble phosphonatase-based systems in having a
three component ABC transporter, where TIGR01097 is the
permease, TIGR01098 is the phosphonates binding protein,
and TIGR02315 is the ATP-binding cassette (ABC) protein.
They differ, however, in having, typically, ten or more
additional genes, many of which are believed to form a
membrane-associated C-P lysase complex. This protein
(PhnL) and the adjacent-encoded PhnK (TIGR02323)
resemble transporter ATP-binding proteins but are
suggested, based on mutatgenesis studies, to be part of
this C-P lyase complex rather than part of a transporter
per se.
Length = 224
Score = 34.3 bits (79), Expect = 0.024
Identities = 12/32 (37%), Positives = 22/32 (68%)
Query: 49 SGGQRARISLARAVYKRADVYLLDDPLSAVDA 80
SGG++ R+++AR + LLD+P +++DA
Sbjct: 151 SGGEQQRVNIARGFIADYPILLLDEPTASLDA 182
>gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette
domain 1 of RNase L inhibitor. The ABC ATPase, RNase L
inhibitor (RLI), is a key enzyme in ribosomal
biogenesis, formation of translation preinitiation
complexes, and assembly of HIV capsids. RLI s are not
transport proteins and thus cluster with a group of
soluble proteins that lack the transmembrane components
commonly found in other members of the family.
Structurally, RLIs have an N-terminal Fe-S domain and
two nucleotide binding domains which are arranged to
form two composite active sites in their interface
cleft. RLI is one of the most conserved enzymes between
archaea and eukaryotes with a sequence identity more
than 48%. The high degree of evolutionary conservation
suggests that RLI performs a central role in archaeal
and eukaryotic physiology.
Length = 255
Score = 34.3 bits (79), Expect = 0.031
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 47 SLSGGQRARISLARAVYKRADVYLLDDPLSAVD 79
LSGG+ R+++A A+ + AD Y D+P S +D
Sbjct: 139 QLSGGELQRVAIAAALARDADFYFFDEPSSYLD 171
>gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter,
ATP-binding protein. This small clade of ABC-type
transporter ATP-binding protein components is found as a
three gene cassette along with a periplasmic
substrate-binding protein (TIGR03868) and a permease
(TIGR03869). The organisms containing this cassette are
all Actinobacteria and all contain numerous genes
requiring the coenzyme F420. This model was defined
based on five such organisms, four of which are lacking
all F420 biosynthetic capability save the final
side-chain polyglutamate attachment step (via the gene
cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and
marine actinobacterium PHSC20C1 this cassette is in an
apparent operon with the cofE gene and, in PHSC20C1,
also with a F420-dependent glucose-6-phosphate
dehydrogenase (TIGR03554). Based on these observations
we propose that this ATP-binding protein is a component
of an F420-0 (that is, F420 lacking only the
polyglutamate tail) transporter.
Length = 256
Score = 34.0 bits (78), Expect = 0.036
Identities = 32/122 (26%), Positives = 50/122 (40%), Gaps = 34/122 (27%)
Query: 47 SLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWG 106
+LSGG+R R+ +ARA+ + + LLD+P + +D V L
Sbjct: 137 TLSGGERQRVHVARALAQEPKLLLLDEPTNHLD--VRAQL-------------------- 174
Query: 107 RSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHV-DHVMLLEKGSVEAFGTTTQ 165
L+LVR TV+ H + DHV++L+ G V A G +
Sbjct: 175 -----------ETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPRE 223
Query: 166 LL 167
+L
Sbjct: 224 VL 225
>gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 33.7 bits (77), Expect = 0.038
Identities = 17/49 (34%), Positives = 28/49 (57%)
Query: 31 AQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVD 79
AQL + + LSGGQ+ R+ +ARA+ + +V L D+P + +D
Sbjct: 130 AQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLD 178
>gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit;
Provisional.
Length = 233
Score = 34.0 bits (78), Expect = 0.038
Identities = 15/41 (36%), Positives = 25/41 (60%)
Query: 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFE 88
LSGG+R R+++ARA+ + L D+P +DA +F+
Sbjct: 146 LSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQ 186
>gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 274
Score = 33.8 bits (77), Expect = 0.042
Identities = 30/150 (20%), Positives = 55/150 (36%), Gaps = 39/150 (26%)
Query: 47 SLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWG 106
+LSGGQ ++LA + + + D+ S +D G + E I LH
Sbjct: 136 TLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLER-IKKLHE---------- 184
Query: 107 RSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQL 166
K KT++ ITH ++ L D ++++++G + G +
Sbjct: 185 ----------------------KGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENV 222
Query: 167 LAS------GLDFTQLLDAPEEEDKAENEV 190
L+ GL L++ E +
Sbjct: 223 LSDVSLQTLGLTPPSLIELAENLKMHGVVI 252
>gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 200
Score = 33.4 bits (76), Expect = 0.042
Identities = 14/32 (43%), Positives = 23/32 (71%)
Query: 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVD 79
LS GQ+ +++L R +A ++LLD+PL A+D
Sbjct: 128 LSSGQKRQVALLRLWMSKAKLWLLDEPLVALD 159
>gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional.
Length = 222
Score = 33.7 bits (77), Expect = 0.045
Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Query: 46 VSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGK---HLFED 89
+ LSGG++ R+ +ARAV + V L D+P +D + + LFE+
Sbjct: 136 IQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEE 182
>gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein
YbbA; Provisional.
Length = 228
Score = 33.6 bits (77), Expect = 0.048
Identities = 16/36 (44%), Positives = 22/36 (61%)
Query: 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVG 83
LSGG++ R++LARA R DV D+P +D G
Sbjct: 147 LSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTG 182
>gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter
proteins. ABC-type Class 2 contains systems involved in
cellular processes other than transport. These families
are characterized by the fact that the ABC subunit is
made up of duplicated, fused ABC modules (ABC2). No
known transmembrane proteins or domains are associated
with these proteins.
Length = 162
Score = 33.1 bits (76), Expect = 0.050
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Query: 46 VSLSGGQRARISLARAV----YKRADVYLLDDPLSAVDAHVGKHLFE 88
+ LSGG++ +LA + K +Y+LD+ +D G+ L E
Sbjct: 76 LQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAE 122
>gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of
the Na+ transporter. NatA is the ATPase component of a
bacterial ABC-type Na+ transport system called NatAB,
which catalyzes ATP-dependent electrogenic Na+ extrusion
without mechanically coupled proton or K+ uptake. NatB
possess six putative membrane spanning regions at its
C-terminus. In B. subtilis, NatAB is inducible by agents
such as ethanol and protonophores, which lower the
proton-motive force across the membrane. The closest
sequence similarity to NatA is exhibited by DrrA of the
two-component daunorubicin- and doxorubicin-efflux
system. Hence, the functional NatAB is presumably
assembled with two copies of a single ATP-binding
protein and a single integral membrane protein.
Length = 218
Score = 33.1 bits (76), Expect = 0.054
Identities = 14/45 (31%), Positives = 24/45 (53%)
Query: 44 KGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFE 88
+ S G R ++++ARA+ V LLD+P + +D + L E
Sbjct: 133 RVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALRE 177
>gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 276
Score = 33.5 bits (76), Expect = 0.055
Identities = 17/39 (43%), Positives = 24/39 (61%)
Query: 41 VGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVD 79
+ D LSGGQ+ + LAR + +V LLD+P SA+D
Sbjct: 157 LSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALD 195
>gnl|CDD|223256 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication,
recombination, and repair].
Length = 935
Score = 33.7 bits (78), Expect = 0.058
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 19/53 (35%)
Query: 47 SLSGGQRARISLARAVYKRAD---VYLLDDPLSAVDAHVGKHLFEDCITGLHT 96
+LSGG+ R+ LA+ + KR+ +Y+LD+P TGLH
Sbjct: 822 TLSGGEAQRVKLAKELSKRSTGKTLYILDEP----------------TTGLHF 858
>gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit;
Provisional.
Length = 343
Score = 33.6 bits (78), Expect = 0.059
Identities = 15/32 (46%), Positives = 22/32 (68%)
Query: 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVD 79
LSGGQ+ R+++ARA+ V L D+ SA+D
Sbjct: 141 LSGGQKQRVAIARALASNPKVLLCDEATSALD 172
>gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell
division and chromosome partitioning].
Length = 223
Score = 33.3 bits (77), Expect = 0.060
Identities = 13/32 (40%), Positives = 22/32 (68%)
Query: 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVD 79
LSGG++ R+++ARA+ + V L D+P +D
Sbjct: 138 LSGGEQQRVAIARAIVNQPAVLLADEPTGNLD 169
>gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 289
Score = 33.4 bits (76), Expect = 0.067
Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 3/71 (4%)
Query: 9 GPGHPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADV 68
GP + N + K QLP V LSGGQ+ R++LA + +
Sbjct: 115 GPVNLGENKQEAYKKVPELLKLVQLP---EDYVKRSPFELSGGQKRRVALAGIIAMDGNT 171
Query: 69 YLLDDPLSAVD 79
+LD+P +D
Sbjct: 172 LVLDEPTGGLD 182
>gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the
cell division transporter. FtsE is a hydrophilic
nucleotide-binding protein that binds FtsX to form a
heterodimeric ATP-binding cassette (ABC)-type
transporter that associates with the bacterial inner
membrane. The FtsE/X transporter is thought to be
involved in cell division and is important for assembly
or stability of the septal ring.
Length = 214
Score = 32.8 bits (75), Expect = 0.081
Identities = 11/33 (33%), Positives = 21/33 (63%)
Query: 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVDA 80
LSGG++ R+++ARA+ + + D+P +D
Sbjct: 137 LSGGEQQRVAIARAIVNSPTILIADEPTGNLDP 169
>gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and
permease components [Secondary metabolites biosynthesis,
transport, and catabolism / Inorganic ion transport and
metabolism].
Length = 546
Score = 33.2 bits (76), Expect = 0.087
Identities = 29/112 (25%), Positives = 44/112 (39%), Gaps = 36/112 (32%)
Query: 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGR 107
LS GQ+ R++L A+ + D+ +LD+ + D P F R
Sbjct: 449 LSTGQKKRLALLLALLEERDILVLDEWAADQD-------------------PAF-----R 484
Query: 108 SFFGSALGVRGALSLVRTSFLKE--KTVMLITHQIQYLTHVDHVMLLEKGSV 157
F L L L LKE KT+ I+H Y H D ++ + G +
Sbjct: 485 REFYQVL-----LPL-----LKEQGKTIFAISHDDHYFIHADRLLEMRNGQL 526
>gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein;
Reviewed.
Length = 556
Score = 33.2 bits (77), Expect = 0.098
Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 5/49 (10%)
Query: 32 QLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDA 80
+ P D V LSGG+R R++L R + ++ D+ LLD+P + +DA
Sbjct: 153 RCPPWD-AKVT----KLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDA 196
Score = 31.6 bits (73), Expect = 0.25
Identities = 13/27 (48%), Positives = 20/27 (74%)
Query: 48 LSGGQRARISLARAVYKRADVYLLDDP 74
LSGG+R R+ LA+ + + +V LLD+P
Sbjct: 446 LSGGERNRLHLAKTLKQGGNVLLLDEP 472
>gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein;
Provisional.
Length = 623
Score = 32.9 bits (75), Expect = 0.10
Identities = 15/34 (44%), Positives = 22/34 (64%)
Query: 49 SGGQRARISLARAVYKRADVYLLDDPLSAVDAHV 82
SGGQR RI +ARA+ V + D+ +SA+D +
Sbjct: 465 SGGQRQRICIARALALNPKVIIADEAVSALDVSI 498
Score = 30.6 bits (69), Expect = 0.57
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVD 79
LSGG R R+ +A A+ R V + D+P +A+D
Sbjct: 169 LSGGMRQRVMIAMALSCRPAVLIADEPTTALD 200
>gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system,
component A2. The enzyme that catalyzes the final step
in methanogenesis, methyl coenzyme M reductase, contains
alpha, beta, and gamma chains. In older literature, the
complex of alpha, beta, and gamma chains was termed
component C, while this single chain protein was termed
methyl coenzyme M reductase system component A2 [Energy
metabolism, Methanogenesis].
Length = 520
Score = 32.9 bits (75), Expect = 0.11
Identities = 33/140 (23%), Positives = 54/140 (38%), Gaps = 34/140 (24%)
Query: 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGR 107
LSGG++ R+ LAR + K ++L D+P +D K + L V
Sbjct: 169 LSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHN----ALEEAVKASG----- 219
Query: 108 SFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLL 167
+S+V TS E L D + LE G ++ GT +++
Sbjct: 220 ------------ISMVLTSHWPEVIEDL----------SDKAIWLENGEIKEEGTPDEVV 257
Query: 168 ASGLDFTQLLDAPEEEDKAE 187
A F + + E+E + E
Sbjct: 258 AV---FMEGVSEVEKECEVE 274
Score = 30.5 bits (69), Expect = 0.58
Identities = 12/32 (37%), Positives = 21/32 (65%)
Query: 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVD 79
LS G+R R++LA+ + K + +LD+P +D
Sbjct: 428 LSEGERHRVALAQVLIKEPRIVILDEPTGTMD 459
>gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport
systems, ATPase component [Amino acid transport and
metabolism].
Length = 250
Score = 32.5 bits (75), Expect = 0.11
Identities = 12/34 (35%), Positives = 23/34 (67%)
Query: 47 SLSGGQRARISLARAVYKRADVYLLDDPLSAVDA 80
+LS GQ+ R+ +ARA+ + + LLD+P + ++
Sbjct: 149 NLSYGQQRRLEIARALATQPKLLLLDEPAAGLNP 182
>gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 267
Score = 32.5 bits (74), Expect = 0.12
Identities = 12/35 (34%), Positives = 24/35 (68%)
Query: 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHV 82
L+ GQ+ R++LARA+ R + + D+ L+++D +
Sbjct: 150 LAPGQKQRVALARALILRPKIIIADEALASLDMSM 184
>gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in
lysophospholipase L1 biosynthesis, ATPase component
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 228
Score = 32.4 bits (74), Expect = 0.12
Identities = 16/37 (43%), Positives = 22/37 (59%)
Query: 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGK 84
LSGG++ R++LARA R DV D+P +D G
Sbjct: 147 LSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGD 183
>gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 252
Score = 32.3 bits (74), Expect = 0.13
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 47 SLSGGQRARISLARAVYKRADVYLLDDPLSAVD 79
LSGGQR R +A + + D LLD+PL+ +D
Sbjct: 135 ELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLD 167
>gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional.
Length = 659
Score = 32.5 bits (74), Expect = 0.13
Identities = 15/43 (34%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 39 TLVGDKGV-SLSGGQRARISLARAVYKRADVYLLDDPLSAVDA 80
T++G+ + +SGG+R R+S+A + + +LD+P S +DA
Sbjct: 197 TIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDA 239
>gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed.
Length = 251
Score = 32.4 bits (74), Expect = 0.14
Identities = 15/32 (46%), Positives = 21/32 (65%)
Query: 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVD 79
LSGG+ R+ LARA+ R + +LD+P VD
Sbjct: 121 LSGGETQRVLLARALLNRPQLLVLDEPTQGVD 152
>gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC
transporter ATP-binding subunit GldA. Members of this
protein family are exclusive to the Bacteroidetes phylum
(previously Cytophaga-Flavobacteria-Bacteroides). GldA
is an ABC transporter ATP-binding protein (pfam00005)
linked to a type of rapid surface gliding motility found
in certain Bacteroidetes, such as Flavobacterium
johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA
abolish the gliding phenotype. Gliding motility appears
closely linked to chitin utilization in the model
species Flavobacterium johnsoniae. Bacteroidetes with
members of this protein family appear to have all of the
genes associated with gliding motility.
Length = 301
Score = 32.1 bits (73), Expect = 0.16
Identities = 31/122 (25%), Positives = 52/122 (42%), Gaps = 35/122 (28%)
Query: 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGR 107
LS G R R+ LA+A+ V +LD+P + +D + L E
Sbjct: 134 LSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPN---QLVE------------------- 171
Query: 108 SFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHV-DHVMLLEKGSVEAFGTTTQL 166
+R V + K+KT++L TH +Q + + D V+++ KG + A +L
Sbjct: 172 --------IRN----VIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDEL 219
Query: 167 LA 168
A
Sbjct: 220 SA 221
>gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component
of branched chain amino acids transport system. The
Mj1267/LivG ABC transporter subfamily is involved in the
transport of the hydrophobic amino acids leucine,
isoleucine and valine. MJ1267 is a branched-chain amino
acid transporter with 29% similarity to both the LivF
and LivG components of the E. coli branched-chain amino
acid transporter. MJ1267 contains an insertion from
residues 114 to 123 characteristic of LivG
(Leucine-Isoleucine-Valine) homologs. The branched-chain
amino acid transporter from E. coli comprises a
heterodimer of ABCs (LivF and LivG), a heterodimer of
six-helix TM domains (LivM and LivH), and one of two
alternative soluble periplasmic substrate binding
proteins (LivK or LivJ).
Length = 236
Score = 32.0 bits (74), Expect = 0.16
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 47 SLSGGQRARISLARAVYKRADVYLLDDPLS 76
LS GQ+ R+ +ARA+ + LLD+P +
Sbjct: 143 ELSYGQQRRLEIARALATDPKLLLLDEPAA 172
>gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding
protein OppF; Provisional.
Length = 331
Score = 32.0 bits (73), Expect = 0.16
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 49 SGGQRARISLARAVYKRADVYLLDDPLSAVD 79
SGGQ RI +ARA+ + + D+P+SA+D
Sbjct: 163 SGGQCQRIGIARALILEPKLIICDEPVSALD 193
>gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 277
Score = 32.1 bits (73), Expect = 0.17
Identities = 25/120 (20%), Positives = 51/120 (42%), Gaps = 33/120 (27%)
Query: 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGR 107
LSGG++ R+++A + V +LD+P + +D K L + + +G
Sbjct: 138 LSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELID--------FLNDLPETYGM 189
Query: 108 SFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHV-DHVMLLEKGSVEAFGTTTQL 166
TV+ THQ+ + + D++ +++KG + A+GT ++
Sbjct: 190 ------------------------TVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEI 225
>gnl|CDD|213238 cd03271, ABC_UvrA_II, ATP-binding cassette domain II of the
excision repair protein UvrA. Nucleotide excision
repair in eubacteria is a process that repairs DNA
damage by the removal of a 12-13-mer oligonucleotide
containing the lesion. Recognition and cleavage of the
damaged DNA is a multistep ATP-dependent reaction that
requires the UvrA, UvrB, and UvrC proteins. Both UvrA
and UvrB are ATPases, with UvrA having two ATP binding
sites, which have the characteristic signature of the
family of ABC proteins and UvrB having one ATP binding
site that is structurally related to that of helicases.
Length = 261
Score = 31.8 bits (73), Expect = 0.19
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 19/58 (32%)
Query: 42 GDKGVSLSGGQRARISLARAVYKRAD---VYLLDDPLSAVDAHVGKHLFEDCITGLHT 96
G +LSGG+ RI LA+ + KR+ +Y+LD+P TGLH
Sbjct: 164 GQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEP----------------TTGLHF 205
>gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 288
Score = 32.0 bits (72), Expect = 0.20
Identities = 29/129 (22%), Positives = 54/129 (41%), Gaps = 35/129 (27%)
Query: 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGR 107
LSGGQ R+++A + +V +LD+P + +D +
Sbjct: 145 LSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEM--------------------- 183
Query: 108 SFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLT-HVDHVMLLEKGSVEAFGTTTQL 166
+ L + +TV+L+TH + + + D+V LLEKG + + GT + +
Sbjct: 184 ------------MQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDV 231
Query: 167 LASGLDFTQ 175
+DF +
Sbjct: 232 FQE-VDFLK 239
>gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 287
Score = 31.6 bits (72), Expect = 0.23
Identities = 12/32 (37%), Positives = 21/32 (65%)
Query: 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVD 79
LSGGQ+ R+++A V + +LD+P + +D
Sbjct: 145 LSGGQKRRVAIAGVVAMEPKILILDEPTAGLD 176
>gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 275
Score = 31.6 bits (72), Expect = 0.23
Identities = 12/32 (37%), Positives = 23/32 (71%)
Query: 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVD 79
LSGGQ+ R+++A + + ++ +LD+P S +D
Sbjct: 138 LSGGQKKRVAIAGILAMKPEIIVLDEPTSGLD 169
>gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 259
Score = 31.6 bits (72), Expect = 0.23
Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 6/48 (12%)
Query: 47 SLSGGQRARISLAR------AVYKRADVYLLDDPLSAVDAHVGKHLFE 88
+LSGG++ R+ LAR LD+P SA+D H
Sbjct: 135 TLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLR 182
>gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding
protein. DrrA is the ATP-binding protein component of a
bacterial exporter complex that confers resistance to
the antibiotics daunorubicin and doxorubicin. In
addition to DrrA, the complex includes an integral
membrane protein called DrrB. DrrA belongs to the ABC
family of transporters and shares sequence and
functional similarities with a protein found in cancer
cells called P-glycoprotein. ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region in
addition to the Walker A motif/P-loop and Walker B motif
commonly found in a number of ATP- and GTP-binding and
hydrolyzing proteins.
Length = 220
Score = 31.2 bits (71), Expect = 0.24
Identities = 15/40 (37%), Positives = 24/40 (60%)
Query: 49 SGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFE 88
SGG R R+ +AR++ R +V LD+P +D H++E
Sbjct: 133 SGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWE 172
>gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding
cassette component of monosaccharide transport system.
This family represents domain II of the carbohydrate
uptake proteins that transport only monosaccharides
(Monos). The Carb_Monos family is involved in the uptake
of monosaccharides, such as pentoses (such as xylose,
arabinose, and ribose) and hexoses (such as xylose,
arabinose, and ribose), that cannot be broken down to
simple sugars by hydrolysis. In members of Carb_Monos
family the single hydrophobic gene product forms a
homodimer, while the ABC protein represents a fusion of
two nucleotide-binding domains. However, it is assumed
that two copies of the ABC domains are present in the
assembled transporter.
Length = 182
Score = 31.2 bits (72), Expect = 0.24
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 45 GVSLSGGQRARISLARAVYKRADVYLLDDPLSAVD 79
LSGG + ++ LAR + + V +LD+P VD
Sbjct: 102 SSLLSGGNQQKVVLARWLARDPRVLILDEPTRGVD 136
>gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE.
This family represents the NikE subunit of a
multisubunit nickel import ABC transporter complex.
Nickel, once imported, may be used in urease and in
certain classes of hydrogenase and superoxide dismutase
[Transport and binding proteins, Cations and iron
carrying compounds].
Length = 265
Score = 31.3 bits (71), Expect = 0.26
Identities = 14/34 (41%), Positives = 23/34 (67%)
Query: 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVDAH 81
LSGGQ RI++ARA+ + + +LD+ +S +D
Sbjct: 151 LSGGQLQRINIARALAVKPKLIVLDEAVSNLDMV 184
>gnl|CDD|233062 TIGR00630, uvra, excinuclease ABC, A subunit. This family is a
member of the ABC transporter superfamily of proteins of
which all members for which functions are known except
the UvrA proteins are involved in the transport of
material through membranes. UvrA orthologs are involved
in the recognition of DNA damage as a step in nucleotide
excision repair. This family is based on the
phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis,
Stanford University) [DNA metabolism, DNA replication,
recombination, and repair].
Length = 925
Score = 31.9 bits (73), Expect = 0.27
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 19/53 (35%)
Query: 47 SLSGGQRARISLARAVYKRAD---VYLLDDPLSAVDAHVGKHLFEDCITGLHT 96
+LSGG+ RI LA+ + KR+ +Y+LD+P TGLH
Sbjct: 829 TLSGGEAQRIKLAKELSKRSTGRTLYILDEP----------------TTGLHF 865
>gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport
system, ATPase component. The biological function of
this family is not well characterized, but display ABC
domains similar to members of ABCA subfamily. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 211
Score = 31.0 bits (71), Expect = 0.27
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 47 SLSGGQRARISLARAVYKRADVYLLDDP 74
SLSGG R R+ +A+A+ + ++D+P
Sbjct: 130 SLSGGMRRRVGIAQALVGDPSILIVDEP 157
>gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding
protein UrtE. Members of this protein family are ABC
transporter ATP-binding subunits associated with urea
transport and metabolism. This protein is found in a
conserved five-gene transport operon typically found
adjacent to urease genes. It was shown in Cyanobacteria
that disruption leads to the loss of high-affinity urea
transport activity [Transport and binding proteins,
Amino acids, peptides and amines].
Length = 230
Score = 31.3 bits (72), Expect = 0.28
Identities = 14/31 (45%), Positives = 23/31 (74%)
Query: 44 KGVSLSGGQRARISLARAVYKRADVYLLDDP 74
+G LSGGQ+ ++++ARA+ R + LLD+P
Sbjct: 128 RGGDLSGGQQQQLAIARALVTRPKLLLLDEP 158
>gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 277
Score = 31.2 bits (70), Expect = 0.30
Identities = 27/134 (20%), Positives = 56/134 (41%), Gaps = 33/134 (24%)
Query: 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGR 107
LSGGQ+ R+++A + R ++ +LD+ S +D GR
Sbjct: 141 LSGGQKQRVAVAGIIALRPEIIILDESTSMLDPT------------------------GR 176
Query: 108 SFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLL 167
+ + ++ + + TV+ ITH + D +++++ G + ++L
Sbjct: 177 Q------EIMRVIHEIKEKY--QLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELF 228
Query: 168 ASGLDFTQL-LDAP 180
A+ D ++ LD P
Sbjct: 229 ATSEDMVEIGLDVP 242
>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain. This domain is
found at the N terminus of SMC proteins. The SMC
(structural maintenance of chromosomes) superfamily
proteins have ATP-binding domains at the N- and
C-termini, and two extended coiled-coil domains separated
by a hinge in the middle. The eukaryotic SMC proteins
form two kind of heterodimers: the SMC1/SMC3 and the
SMC2/SMC4 types. These heterodimers constitute an
essential part of higher order complexes, which are
involved in chromatin and DNA dynamics. This family also
includes the RecF and RecN proteins that are involved in
DNA metabolism and recombination.
Length = 1162
Score = 31.5 bits (71), Expect = 0.35
Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 8/39 (20%)
Query: 47 SLSGGQRARISLA--RAV--YKRADVYLLDDPLSAVDAH 81
+LSGG++ ++LA A+ Y+ A YLLD+ +DA
Sbjct: 1078 NLSGGEKTLVALALIFAIQKYRPAPFYLLDE----IDAA 1112
>gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport
systems, ATPase component [Amino acid transport and
metabolism].
Length = 237
Score = 30.9 bits (71), Expect = 0.37
Identities = 12/31 (38%), Positives = 22/31 (70%)
Query: 44 KGVSLSGGQRARISLARAVYKRADVYLLDDP 74
+ +LSGG++ +++ARA+ R + LLD+P
Sbjct: 133 RAGTLSGGEQQMLAIARALMSRPKLLLLDEP 163
>gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP)
Family protein. [Transport and binding proteins,
Other].
Length = 617
Score = 31.2 bits (71), Expect = 0.38
Identities = 31/138 (22%), Positives = 49/138 (35%), Gaps = 47/138 (34%)
Query: 39 TLVGDKGV--SLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHT 96
T +G G LSGG+R R++ A + + D+P S +D
Sbjct: 156 TRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLD----------------- 198
Query: 97 GVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKE-----KTVMLITHQIQY--LTHVDHV 149
SF A S+V+ LK KT++ HQ D +
Sbjct: 199 -----------SFM--------AYSVVQV--LKGLAQKGKTIICTIHQPSSELFELFDKI 237
Query: 150 MLLEKGSVEAFGTTTQLL 167
+L+ +G V G+ Q +
Sbjct: 238 ILMAEGRVAYLGSPDQAV 255
>gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK.
Members of this family are the PhnK protein of C-P
lyase systems for utilization of phosphonates. These
systems resemble phosphonatase-based systems in having a
three component ABC transporter, where TIGR01097 is the
permease, TIGR01098 is the phosphonates binding protein,
and TIGR02315 is the ATP-binding cassette (ABC) protein.
They differ, however, in having, typically, ten or more
additional genes, many of which are believed to form a
membrane-associated complex. This protein (PhnK) and the
adjacent-encoded PhnL resemble transporter ATP-binding
proteins but are suggested, based on mutatgenesis
studies, to be part of this complex rather than part of
a transporter per se [Central intermediary metabolism,
Phosphorus compounds].
Length = 253
Score = 31.0 bits (70), Expect = 0.38
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 37 DRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGL 94
D T + D + SGG + R+ +AR + R + +D+P +D V L D + GL
Sbjct: 138 DPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLL-DLLRGL 194
>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter. This
model describes the photoreceptor protein (rim protein)
in eukaryotes. It is the member of ABC transporter
superfamily. Rim protein is a membrane glycoprotein which
is localized in the photoreceptor outer segment discs.
Mutation/s in its genetic loci is implicated in the
recessive Stargardt's disease [Transport and binding
proteins, Other].
Length = 2272
Score = 31.1 bits (70), Expect = 0.42
Identities = 15/41 (36%), Positives = 26/41 (63%)
Query: 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFE 88
LSGG + ++S+A A A V +LD+P S VD + + +++
Sbjct: 1062 LSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWD 1102
>gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein;
Provisional.
Length = 501
Score = 31.1 bits (71), Expect = 0.43
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 12/61 (19%)
Query: 28 EDFAQL-----PSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHV 82
DF +L PS ++ +G LSGG + ++++AR + R V +LD+P VD V
Sbjct: 376 SDFIRLFNIKTPSMEQA-IGL----LSGGNQQKVAIARGLMTRPKVLILDEPTRGVD--V 428
Query: 83 G 83
G
Sbjct: 429 G 429
>gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 258
Score = 30.5 bits (69), Expect = 0.45
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 37 DRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGL 94
D + D + SGG + R+ +AR + R + +D+P +D V L D + GL
Sbjct: 141 DLDRIDDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLL-DLLRGL 197
>gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit;
Provisional.
Length = 280
Score = 30.8 bits (70), Expect = 0.46
Identities = 29/139 (20%), Positives = 55/139 (39%), Gaps = 45/139 (32%)
Query: 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGR 107
LSGGQ+ R+++A + R + + D+P + +D
Sbjct: 145 LSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPS-------------------------- 178
Query: 108 SFFGSALGVRGALSLVRTSFLKEK---TVMLITHQIQYLTHVDHVMLLEKGSV------- 157
G R ++ ++ L +K T++LITH ++ D +++++ G V
Sbjct: 179 -------GRREVVNTIKE--LNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPK 229
Query: 158 EAFGTTTQLLASGLDFTQL 176
E F + GLD Q+
Sbjct: 230 EIFKEVEMMKKIGLDVPQV 248
>gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed.
Length = 635
Score = 31.1 bits (71), Expect = 0.46
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 47 SLSGGQRARISLARAVYKRADVYLLDDPLSAVD 79
SLSGG + +L RA+ DV LLD+P + +D
Sbjct: 156 SLSGGWLRKAALGRALVSNPDVLLLDEPTNHLD 188
Score = 29.9 bits (68), Expect = 1.1
Identities = 13/27 (48%), Positives = 20/27 (74%)
Query: 48 LSGGQRARISLARAVYKRADVYLLDDP 74
LSGG+R R+ LAR K +++ +LD+P
Sbjct: 441 LSGGERNRLLLARLFLKPSNLLILDEP 467
>gnl|CDD|213240 cd03273, ABC_SMC2_euk, ATP-binding cassette domain of eukaryotic
SMC2 proteins. The structural maintenance of
chromosomes (SMC) proteins are large (approximately 110
to 170 kDa), and each is arranged into five recognizable
domains. Amino-acid sequence homology of SMC proteins
between species is largely confined to the amino- and
carboxy-terminal globular domains. The amino-terminal
domain contains a 'Walker A' nucleotide-binding domain
(GxxGxGKS/T, in the single-letter amino-acid code),
which by mutational studies has been shown to be
essential in several proteins. The carboxy-terminal
domain contains a sequence (the DA-box) that resembles a
'Walker B' motif, and a motif with homology to the
signature sequence of the ATP-binding cassette (ABC)
family of ATPases. The sequence homology within the
carboxy-terminal domain is relatively high within the
SMC1-SMC4 group, whereas SMC5 and SMC6 show some
divergence in both of these sequences. In eukaryotic
cells, the proteins are found as heterodimers of SMC1
paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6
(formerly known as Rad18).
Length = 251
Score = 30.7 bits (70), Expect = 0.48
Identities = 15/36 (41%), Positives = 25/36 (69%), Gaps = 4/36 (11%)
Query: 48 LSGGQRARISL----ARAVYKRADVYLLDDPLSAVD 79
LSGGQR+ ++L A ++K A +Y+LD+ +A+D
Sbjct: 167 LSGGQRSLVALSLILALLLFKPAPMYILDEVDAALD 202
>gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 316
Score = 30.6 bits (70), Expect = 0.48
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVDA 80
LSGG R R+ +A A+ + + D+P +A+D
Sbjct: 154 LSGGMRQRVMIAMALALNPKLLIADEPTTALDV 186
>gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE;
Provisional.
Length = 268
Score = 30.4 bits (69), Expect = 0.55
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 47 SLSGGQRARISLARAVYKRADVYLLDDPLSAVDAH 81
LSGGQ R+ LARA+ + +LD+ +S +D
Sbjct: 151 QLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLV 185
>gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 271
Score = 30.4 bits (68), Expect = 0.63
Identities = 13/32 (40%), Positives = 22/32 (68%)
Query: 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVD 79
LS GQ+ R+++A A+ +A LLD+P + +D
Sbjct: 137 LSHGQKKRVAIAGALVLQARYLLLDEPTAGLD 168
>gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane
component/ATP-binding component; Provisional.
Length = 547
Score = 30.3 bits (69), Expect = 0.65
Identities = 29/108 (26%), Positives = 44/108 (40%), Gaps = 32/108 (29%)
Query: 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGR 107
LS GQ+ R++L A+ + D+ LLD+ A D +D P F R
Sbjct: 450 LSKGQKKRLALLLALAEERDILLLDE--WAAD--------QD---------PHF-----R 485
Query: 108 SFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKG 155
F L L L++ KT+ I+H Y H D ++ + G
Sbjct: 486 REFYQVL-----LPLLQE---MGKTIFAISHDDHYFIHADRLLEMRNG 525
>gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 235
Score = 30.1 bits (68), Expect = 0.71
Identities = 12/34 (35%), Positives = 23/34 (67%)
Query: 47 SLSGGQRARISLARAVYKRADVYLLDDPLSAVDA 80
+ SGG++ R+++AR + LLD+P +++DA
Sbjct: 152 TFSGGEQQRVNIARGFIVDYPILLLDEPTASLDA 185
>gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit;
Provisional.
Length = 305
Score = 30.1 bits (68), Expect = 0.72
Identities = 22/103 (21%), Positives = 39/103 (37%), Gaps = 39/103 (37%)
Query: 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGR 107
LSGGQ+ R++LA + D + D+P + +D
Sbjct: 166 LSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQ-------------------------- 199
Query: 108 SFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVM 150
GV+ L + + KT++L+TH + D+V+
Sbjct: 200 -------GVKEILEIFDNLNKQGKTIILVTHDL------DNVL 229
>gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted
acetyltransferase domain [General function prediction
only].
Length = 593
Score = 30.2 bits (68), Expect = 0.78
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 6/37 (16%)
Query: 48 LSGGQRARISLARAVYKRADVYLLD------DPLSAV 78
LS GQ+ R LA+ + +R +V L+D D L+AV
Sbjct: 508 LSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAV 544
>gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding
protein; Provisional.
Length = 265
Score = 30.0 bits (67), Expect = 0.90
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 47 SLSGGQRARISLARAVYKRADVYLLDDPLSAVD 79
+LSGGQR R +A + + + LLD+P + +D
Sbjct: 143 TLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLD 175
>gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding
protein SapF; Provisional.
Length = 267
Score = 29.8 bits (67), Expect = 0.93
Identities = 13/32 (40%), Positives = 22/32 (68%)
Query: 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVD 79
L+ GQ+ R+ LARA+ R V + D+ L+++D
Sbjct: 150 LAPGQKQRLGLARALILRPKVIIADEALASLD 181
>gnl|CDD|234734 PRK00349, uvrA, excinuclease ABC subunit A; Reviewed.
Length = 943
Score = 30.0 bits (69), Expect = 0.97
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 19/52 (36%)
Query: 48 LSGGQRARISLARAVYKRAD---VYLLDDPLSAVDAHVGKHLFEDCITGLHT 96
LSGG+ R+ LA+ + KR+ +Y+LD+P TGLH
Sbjct: 831 LSGGEAQRVKLAKELSKRSTGKTLYILDEP----------------TTGLHF 866
>gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter
ATP-binding protein; Provisional.
Length = 491
Score = 29.7 bits (67), Expect = 1.1
Identities = 14/45 (31%), Positives = 23/45 (51%)
Query: 43 DKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLF 87
K +LS Q I +A+A A + ++D+P S++ HLF
Sbjct: 130 AKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLF 174
Score = 27.8 bits (62), Expect = 4.3
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
Query: 36 GDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVD 79
G RT +G SLSGG + ++ + R + + ++ +LD+P +D
Sbjct: 384 GHRTQIG----SLSGGNQQKVIIGRWLLTQPEILMLDEPTRGID 423
>gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional.
Length = 258
Score = 29.4 bits (67), Expect = 1.2
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 7/42 (16%)
Query: 47 SLSGGQRARISLARAVYKRAD------VYLLDDPLSAVD-AH 81
LSGG++ R+ LAR + + + LLD+P SA+D AH
Sbjct: 134 QLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAH 175
>gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family
protein. [Transport and binding proteins, Other].
Length = 1394
Score = 29.7 bits (67), Expect = 1.2
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 5/45 (11%)
Query: 39 TLVGD---KGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDA 80
T VG+ +GVS GG+R R+S+A A A + D+ +D+
Sbjct: 200 TKVGNDFVRGVS--GGERKRVSIAEASLGGAKIQCWDNATRGLDS 242
>gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 325
Score = 29.3 bits (66), Expect = 1.4
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 48 LSGGQRARISLARAVYKRADVYLLDDP 74
LS GQR R LA A+ V LD+P
Sbjct: 157 LSLGQRMRAELAAALLHPPKVLFLDEP 183
>gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in
Fe-S cluster assembly, ATPase component. Biosynthesis
of iron-sulfur clusters (Fe-S) depends on multi-protein
systems. The SUF system of E. coli and Erwinia
chrysanthemi is important for Fe-S biogenesis under
stressful conditions. The SUF system is made of six
proteins: SufC is an atypical cytoplasmic ABC-ATPase,
which forms a complex with SufB and SufD; SufA plays the
role of a scaffold protein for assembly of iron-sulfur
clusters and delivery to target proteins; SufS is a
cysteine desulfurase which mobilizes the sulfur atom
from cysteine and provides it to the cluster; SufE has
no associated function yet.
Length = 200
Score = 29.0 bits (66), Expect = 1.5
Identities = 10/35 (28%), Positives = 19/35 (54%)
Query: 45 GVSLSGGQRARISLARAVYKRADVYLLDDPLSAVD 79
SGG++ R + + + D+ +LD+P S +D
Sbjct: 102 NEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLD 136
>gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of
branched-chain amino acid transporter. LivF (TM1139) is
part of the LIV-I bacterial ABC-type two-component
transport system that imports neutral, branched-chain
amino acids. The E. coli branched-chain amino acid
transporter comprises a heterodimer of ABC transporters
(LivF and LivG), a heterodimer of six-helix TM domains
(LivM and LivH), and one of two alternative soluble
periplasmic substrate binding proteins (LivK or LivJ).
ABC transporters are a large family of proteins involved
in the transport of a wide variety of different
compounds, like sugars, ions, peptides, and more complex
organic molecules.
Length = 222
Score = 28.9 bits (66), Expect = 1.6
Identities = 12/31 (38%), Positives = 21/31 (67%)
Query: 44 KGVSLSGGQRARISLARAVYKRADVYLLDDP 74
+LSGG++ +++ARA+ R + LLD+P
Sbjct: 129 LAGTLSGGEQQMLAIARALMSRPKLLLLDEP 159
>gnl|CDD|234806 PRK00635, PRK00635, excinuclease ABC subunit A; Provisional.
Length = 1809
Score = 29.4 bits (66), Expect = 1.7
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 41 VGDKGVSLSGGQRARISLARAVYKRAD--VYLLDDPLSAV 78
+G + +LS G+ R+ LA+ + +YLL+DPLS +
Sbjct: 1381 LGQEQDTLSDGEHYRLHLAKKISSNLTDIIYLLEDPLSGL 1420
>gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems,
ATPase components [General function prediction only].
Length = 501
Score = 29.0 bits (66), Expect = 1.8
Identities = 13/41 (31%), Positives = 25/41 (60%)
Query: 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFE 88
LS G++ R+ + +A+Y+ A + +LD+P + + LFE
Sbjct: 141 LSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFE 181
>gnl|CDD|184128 PRK13541, PRK13541, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 195
Score = 28.3 bits (63), Expect = 2.0
Identities = 12/34 (35%), Positives = 24/34 (70%)
Query: 40 LVGDKGVSLSGGQRARISLARAVYKRADVYLLDD 73
L+ +K SLS G + +++AR + ++D++LLD+
Sbjct: 116 LLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDE 149
>gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 287
Score = 28.6 bits (64), Expect = 2.1
Identities = 12/41 (29%), Positives = 23/41 (56%)
Query: 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFE 88
LSGGQ R+++A + ++ LD+P + +D K + +
Sbjct: 146 LSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQ 186
>gnl|CDD|234608 PRK00064, recF, recombination protein F; Reviewed.
Length = 361
Score = 28.6 bits (65), Expect = 2.3
Identities = 14/62 (22%), Positives = 20/62 (32%), Gaps = 8/62 (12%)
Query: 54 ARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLH-------TGVPRFDSRWG 106
A L + A + LLDD S +D L E + GL T +
Sbjct: 289 AEAELLKEETGEAPILLLDDVASELDDGRRAALLE-RLKGLGAQVFITTTDLEDLADLLE 347
Query: 107 RS 108
+
Sbjct: 348 NA 349
>gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein.
Several bacterial species have enzymes xylose isomerase
and xylulokinase enzymes for xylose utilization. Members
of this protein family are the ATP-binding cassette
(ABC) subunit of the known or predicted high-affinity
xylose ABC transporter for xylose import. These genes,
which closely resemble other sugar transport ABC
transporter genes, typically are encoded near xylose
utilization enzymes and regulatory proteins. Note that
this form of the transporter contains two copies of the
ABC transporter domain (pfam00005) [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 500
Score = 28.6 bits (64), Expect = 2.3
Identities = 15/40 (37%), Positives = 26/40 (65%), Gaps = 4/40 (10%)
Query: 41 VGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDA 80
VGD G GGQ+ + +A+A+ K+A + +LD+P S++
Sbjct: 139 VGDYG----GGQQQLVEIAKALNKQARLLILDEPSSSLTE 174
Score = 27.5 bits (61), Expect = 6.2
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 47 SLSGGQRARISLARAVYKRADVYLLDDPLSAVD 79
LSGG + + LA+ + V +LD+P VD
Sbjct: 403 RLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVD 435
>gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an
uncharacterized transporter similar in sequence to NatA.
NatA is the ATPase component of a bacterial ABC-type
Na+ transport system called NatAB, which catalyzes
ATP-dependent electrogenic Na+ extrusion without
mechanically coupled to proton or K+ uptake. NatB
possess six putative membrane spanning regions at its
C-terminus. In B. subtilis, NatAB is inducible by agents
such as ethanol and protonophores, which lower the
proton-motive force across the membrane. The closest
sequence similarity to NatA is exhibited by DrrA of the
two-component daunorubicin- and doxorubicin-efflux
system. Hence, the functional NatAB is presumably
assembled with two copies of the single ATP-binding
protein and the single integral membrane protein.
Length = 236
Score = 28.5 bits (64), Expect = 2.5
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 47 SLSGGQRARISLARAVYKRADVYLLDDPLSAVDAH 81
LS GQR R +A A+ ++ LD+P +D
Sbjct: 153 QLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVV 187
>gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding
protein ModF; Provisional.
Length = 490
Score = 28.4 bits (64), Expect = 2.7
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 47 SLSGGQRARISLARAVYKRADVYLLDDPLSAVD 79
SLS GQ+ + RA+ K + +LD+PL +D
Sbjct: 401 SLSWGQQRLALIVRALVKHPTLLILDEPLQGLD 433
>gnl|CDD|224136 COG1215, COG1215, Glycosyltransferases, probably involved in cell
wall biogenesis [Cell envelope biogenesis, outer
membrane].
Length = 439
Score = 28.4 bits (63), Expect = 3.0
Identities = 20/92 (21%), Positives = 30/92 (32%), Gaps = 26/92 (28%)
Query: 65 RADVYLLDDPLSAVDAHVGKHL---FEDCITGLHTGVPRFDSRWGRSFF----------- 110
+ DV ++ D + + + L FED G G PR +R S
Sbjct: 137 KGDVVVILDADTVPEPDALRELVSPFEDPPVGAVVGTPRIRNRPDPSNLLGRIQAIEYLS 196
Query: 111 ------------GSALGVRGALSLVRTSFLKE 130
G + G+ S R S L+E
Sbjct: 197 AFYFRLRAASKGGLISFLSGSSSAFRRSALEE 228
>gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional.
Length = 272
Score = 27.9 bits (62), Expect = 3.3
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 10/57 (17%)
Query: 35 SGDRTLVGDKGVSLSGGQRARISLARAVYK--------RADVY-LLDDPLSAVD-AH 81
+G LVG +LSGG+ AR+ AR + + + Y LLD+P +A+D AH
Sbjct: 133 AGATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAH 189
>gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 280
Score = 27.8 bits (62), Expect = 3.5
Identities = 11/32 (34%), Positives = 20/32 (62%)
Query: 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVD 79
LSGGQ R+++A + + +LD+P + +D
Sbjct: 146 LSGGQMRRVAIAGILAMEPKILVLDEPTAGLD 177
>gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein;
Provisional.
Length = 501
Score = 28.0 bits (63), Expect = 3.6
Identities = 15/41 (36%), Positives = 24/41 (58%)
Query: 47 SLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLF 87
LS GQR + +A+A+ + A V D+P S++ A + LF
Sbjct: 140 YLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLF 180
>gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase
[Posttranslational modification, protein turnover,
chaperones].
Length = 251
Score = 27.5 bits (62), Expect = 4.1
Identities = 13/62 (20%), Positives = 28/62 (45%), Gaps = 9/62 (14%)
Query: 18 RRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSA 77
+ ++ L E+F +R + SGG++ R + + + + +LD+P S
Sbjct: 124 KEKAELLGLDEEFL-----ERYV----NEGFSGGEKKRNEILQLLLLEPKLAILDEPDSG 174
Query: 78 VD 79
+D
Sbjct: 175 LD 176
>gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of
the bacitracin-resistance transporter. The BcrA
subfamily represents ABC transporters involved in
peptide antibiotic resistance. Bacitracin is a
dodecapeptide antibiotic produced by B. licheniformis
and B. subtilis. The synthesis of bacitracin is
non-ribosomally catalyzed by a multi-enzyme complex
BcrABC. Bacitracin has potent antibiotic activity
against gram-positive bacteria. The inhibition of
peptidoglycan biosynthesis is the best characterized
bacterial effect of bacitracin. The bacitracin
resistance of B. licheniformis is mediated by the ABC
transporter Bcr which is composed of two identical BcrA
ATP-binding subunits and one each of the integral
membrane proteins, BcrB and BcrC. B. subtilis cells
carrying bcr genes on high-copy number plasmids develop
collateral detergent sensitivity, a similar phenomenon
in human cells with overexpressed multi-drug resistance
P-glycoprotein.
Length = 208
Score = 27.6 bits (62), Expect = 4.3
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 44 KGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDA 80
KG SL G + R+ +A A+ D+ +LD+P + +D
Sbjct: 125 KGFSL--GMKQRLGIALALLGNPDLLILDEPTNGLDP 159
>gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional.
Length = 1470
Score = 27.9 bits (62), Expect = 4.5
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 40 LVGDKGVS-LSGGQRARISLARAVYKRADVYLLDDPLSAVDA 80
+VG GV+ LS QR R+++A + + +D+P S +DA
Sbjct: 1011 IVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1052
>gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit;
Provisional.
Length = 506
Score = 27.6 bits (62), Expect = 5.4
Identities = 11/41 (26%), Positives = 24/41 (58%)
Query: 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFE 88
L GQ+ + +A+A+ K+A + +LD+P +++ L +
Sbjct: 144 LGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLD 184
>gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component;
Provisional.
Length = 330
Score = 27.4 bits (61), Expect = 6.2
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 49 SGGQRARISLARAVYKRADVYLLDDPLSAVDAHV 82
SGG R R+ +A A+ R + + D+P +A+D V
Sbjct: 163 SGGMRQRVMIAMALLCRPKLLIADEPTTALDVTV 196
>gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 274
Score = 27.0 bits (60), Expect = 6.3
Identities = 28/115 (24%), Positives = 49/115 (42%), Gaps = 34/115 (29%)
Query: 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGR 107
LS GQ+ R+++A + DV +LD+P++ +D G+ + + LH
Sbjct: 139 LSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPR-GQETLMEILDRLHN----------- 186
Query: 108 SFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQY-LTHVDHVMLLEKGSVEAFG 161
+G KTV++ TH + D V++L++G V A G
Sbjct: 187 ---------QG------------KTVIVATHDVDLAAEWADQVIVLKEGRVLAEG 220
>gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein
YrbF; Provisional.
Length = 269
Score = 27.0 bits (60), Expect = 6.9
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVD 79
LSGG R +LARA+ D+ + D+P D
Sbjct: 144 LSGGMARRAALARAIALEPDLIMFDEPFVGQD 175
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication,
recombination, and repair].
Length = 908
Score = 27.4 bits (61), Expect = 7.2
Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 8/42 (19%)
Query: 47 SLSGGQRARISLARAV--------YKRADVYLLDDPLSAVDA 80
+LSGG+R SLA + R ++ LD+P +D
Sbjct: 815 TLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDE 856
>gnl|CDD|213209 cd03242, ABC_RecF, ATP-binding cassette domain of RecF. RecF is a
recombinational DNA repair ATPase that maintains
replication in the presence of DNA damage. When
replication is prematurely disrupted by DNA damage,
several recF pathway gene products play critical roles
processing the arrested replication fork, allowing it to
resume and complete its task. This CD represents the
nucleotide binding domain of RecF. RecF belongs to a
large superfamily of ABC transporters involved in the
transport of a wide variety of different compounds
including sugars, ions, peptides, and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases with a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 270
Score = 26.9 bits (60), Expect = 7.3
Identities = 20/63 (31%), Positives = 25/63 (39%), Gaps = 7/63 (11%)
Query: 53 RARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLH------TGVPRFDSRWG 106
A I L + V V LLDD L+ +D L D I G T + FD+ W
Sbjct: 198 LAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALL-DAIEGRVQTFVTTTDLADFDALWL 256
Query: 107 RSF 109
R
Sbjct: 257 RRA 259
>gnl|CDD|224116 COG1195, RecF, Recombinational DNA repair ATPase (RecF pathway)
[DNA replication, recombination, and repair].
Length = 363
Score = 26.8 bits (60), Expect = 9.3
Identities = 14/62 (22%), Positives = 20/62 (32%), Gaps = 9/62 (14%)
Query: 54 ARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFE----DC---ITGLHTGVPRFDSRWG 106
A I L R + LLDD S +D L + +T T + D
Sbjct: 291 AEIELLREETGEYPILLLDDVASELDDGRRAALLDTIELGVQVFVTT--TDLEDIDDNLD 348
Query: 107 RS 108
+
Sbjct: 349 EN 350
>gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision
repair protein UvrA. Nucleotide excision repair in
eubacteria is a process that repairs DNA damage by the
removal of a 12-13-mer oligonucleotide containing the
lesion. Recognition and cleavage of the damaged DNA is a
multistep ATP-dependent reaction that requires the UvrA,
UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases,
with UvrA having two ATP binding sites, which have the
characteristic signature of the family of ABC proteins,
and UvrB having one ATP binding site that is
structurally related to that of helicases.
Length = 176
Score = 26.5 bits (59), Expect = 9.5
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Query: 47 SLSGGQRARISLARAVYKRAD--VYLLDDPLSAVDAHVGKHLFEDCITGL 94
+LSGG+ R+ LA ++ +++LD+P + + L E I GL
Sbjct: 87 TLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLE-VIKGL 135
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.136 0.396
Gapped
Lambda K H
0.267 0.0534 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,753,986
Number of extensions: 1012259
Number of successful extensions: 1283
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1267
Number of HSP's successfully gapped: 443
Length of query: 209
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 116
Effective length of database: 6,812,680
Effective search space: 790270880
Effective search space used: 790270880
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.2 bits)