RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12535
(209 letters)
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding
cassette, transport protein; HET: ATP; 2.05A {Homo
sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A*
1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A*
1xfa_A*
Length = 290
Score = 223 bits (571), Expect = 1e-73
Identities = 57/178 (32%), Positives = 89/178 (50%), Gaps = 33/178 (18%)
Query: 18 RRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSA 77
R V+K C L+ED ++ D ++G+ G++LSGGQRARISLARAVYK AD+YLLD P
Sbjct: 130 RSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGY 189
Query: 78 VDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLIT 137
+D K +FE C+ L + KT +L+T
Sbjct: 190 LDVLTEKEIFESCVCKL---------------------------------MANKTRILVT 216
Query: 138 HQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGLDFTQLLDAPEEEDKAENEVDDNAS 195
++++L D +++L +GS +GT ++L DF+ L + D+ E ++
Sbjct: 217 SKMEHLKKADKILILHEGSSYFYGTFSELQNLRPDFSSKLMGCDSFDQFSAERRNSIL 274
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins,
MRP1/ABCC1, nucleotide-binding domain, ATP- binding,
hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Length = 237
Score = 218 bits (557), Expect = 3e-72
Identities = 71/171 (41%), Positives = 94/171 (54%), Gaps = 31/171 (18%)
Query: 18 RRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSA 77
R V++ CAL D LPSGDRT +G+KGV+LSGGQ+ R+SLARAVY AD+YL DDPLSA
Sbjct: 98 RSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSA 157
Query: 78 VDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLIT 137
VDAHVGKH+FE+ I G +G LK KT +L+T
Sbjct: 158 VDAHVGKHIFENVI-----------------------GPKGM--------LKNKTRILVT 186
Query: 138 HQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGLDFTQLLDAPEEEDKAEN 188
H + YL VD ++++ G + G+ +LLA F + L +
Sbjct: 187 HSMSYLPQVDVIIVMSGGKISEMGSYQELLARDGAFAEFLRTYASHHHHHH 237
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC
transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo
sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A
1ckz_A
Length = 229
Score = 217 bits (555), Expect = 5e-72
Identities = 55/162 (33%), Positives = 83/162 (51%), Gaps = 33/162 (20%)
Query: 18 RRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSA 77
R V+K C L+ED ++ D ++G+ G++LSGGQRARISLARAVYK AD+YLLD P
Sbjct: 101 RSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGY 160
Query: 78 VDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLIT 137
+D K +FE C+ L + KT +L+T
Sbjct: 161 LDVLTEKEIFESCVCKL---------------------------------MANKTRILVT 187
Query: 138 HQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGLDFTQLLDA 179
++++L D +++L +GS +GT ++L DF+ L
Sbjct: 188 SKMEHLKKADKILILHEGSSYFYGTFSELQNLQPDFSSKLMG 229
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP,
cyclic peptide, membrane protein; 3.80A {Mus musculus}
PDB: 3g61_A* 3g60_A*
Length = 1284
Score = 88.6 bits (220), Expect = 9e-21
Identities = 46/202 (22%), Positives = 80/202 (39%), Gaps = 37/202 (18%)
Query: 11 GHPDPNSRRVVKVC--ALKEDF-AQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRAD 67
G D + K A DF +LP TLVG++G LSGGQ+ RI++ARA+ +
Sbjct: 487 GREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPK 546
Query: 68 VYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSF 127
+ LLD+ SA+D S V+ AL R
Sbjct: 547 ILLLDEATSALDTE------------------------------SEAVVQAALDKAR--- 573
Query: 128 LKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGLDFTQLLDAPEEEDKAE 187
+ +T ++I H++ + + D + + G + G +L+ + +L+ ++ E
Sbjct: 574 -EGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMREKGIYFKLVMTQTAGNEIE 632
Query: 188 NEVDDNASGTLLHPRQSSVRVS 209
+ S + S + S
Sbjct: 633 LGNEACKSKDEIDNLDMSSKDS 654
Score = 70.8 bits (174), Expect = 1e-14
Identities = 42/166 (25%), Positives = 72/166 (43%), Gaps = 35/166 (21%)
Query: 29 DF-AQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLF 87
F LP T VGDKG LSGGQ+ RI++ARA+ ++ + LLD+ SA+D
Sbjct: 1152 QFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTE------ 1205
Query: 88 EDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVD 147
S V+ AL R + +T ++I H++ + + D
Sbjct: 1206 ------------------------SEKVVQEALDKAR----EGRTCIVIAHRLSTIQNAD 1237
Query: 148 HVMLLEKGSVEAFGTTTQLLASGLDFTQLLDAPEEEDKAENEVDDN 193
+++++ G V+ GT QLLA + ++ ++ +
Sbjct: 1238 LIVVIQNGKVKEHGTHQQLLAQKGIYFSMVSVQAGAKRSYVHHHHH 1283
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter,
transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Length = 587
Score = 78.4 bits (194), Expect = 3e-17
Identities = 41/143 (28%), Positives = 60/143 (41%), Gaps = 35/143 (24%)
Query: 28 EDF-AQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHL 86
DF LP G + V G + SGGQ+ R+S+ARA+ K+ V +LDD S+VD
Sbjct: 459 HDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPI----- 513
Query: 87 FEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHV 146
T + R + L + K T +IT +I
Sbjct: 514 -----T---------EKR-----------ILDGLK----RYTKGCTTFIITQKIPTALLA 544
Query: 147 DHVMLLEKGSVEAFGTTTQLLAS 169
D +++L +G V FGT +LL
Sbjct: 545 DKILVLHEGKVAGFGTHKELLEH 567
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP;
2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Length = 271
Score = 73.7 bits (182), Expect = 4e-16
Identities = 45/166 (27%), Positives = 72/166 (43%), Gaps = 33/166 (19%)
Query: 29 DF-AQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLF 87
DF + P G T VG+ G LSGGQR ++LARA+ ++ + +LD+ SA+DA
Sbjct: 137 DFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAG------ 190
Query: 88 EDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVD 147
+ L V+ L + +TV+LIT Q+
Sbjct: 191 ------------------------NQLRVQRLLY--ESPEWASRTVLLITQQLSLAERAH 224
Query: 148 HVMLLEKGSVEAFGTTTQLLASGLDFTQLLDAPEEEDKAENEVDDN 193
H++ L++GSV GT QL+ G + +++A A +
Sbjct: 225 HILFLKEGSVCEQGTHLQLMERGGCYRSMVEALAAPSDAAAHHHHH 270
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease
protein; asymmetric dimer, tetramer, P-glycoprotein;
HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Length = 243
Score = 68.7 bits (169), Expect = 2e-14
Identities = 35/143 (24%), Positives = 64/143 (44%), Gaps = 35/143 (24%)
Query: 29 DF-AQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLF 87
F +P T VG++GV +SGGQR R+++ARA + + +LD+ +++D+
Sbjct: 120 SFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSE------ 173
Query: 88 EDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVD 147
S V+ AL S +K +T ++I H++ + D
Sbjct: 174 ------------------------SESMVQKAL----DSLMKGRTTLVIAHRLSTIVDAD 205
Query: 148 HVMLLEKGSVEAFGTTTQLLASG 170
+ +EKG + G +L+A+
Sbjct: 206 KIYFIEKGQITGSGKHNELVATH 228
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural
genomics, structural genomics consortium, SGC; 2.20A
{Plasmodium yoelii yoelii str}
Length = 260
Score = 68.4 bits (168), Expect = 3e-14
Identities = 36/143 (25%), Positives = 65/143 (45%), Gaps = 35/143 (24%)
Query: 29 DF-AQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLF 87
DF LP T+VG+KG+ LSGG+R RI++AR + K + + D+ S++D+
Sbjct: 136 DFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSK------ 189
Query: 88 EDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVD 147
+ + A+ +R K +T+++I H++ ++ +
Sbjct: 190 ------------------------TEYLFQKAVEDLR----KNRTLIIIAHRLSTISSAE 221
Query: 148 HVMLLEKGSVEAFGTTTQLLASG 170
++LL KG + GT LL
Sbjct: 222 SIILLNKGKIVEKGTHKDLLKLN 244
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB;
ABC-transporter, transport protein; HET: ADP; 1.60A
{Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A*
2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Length = 247
Score = 67.9 bits (167), Expect = 4e-14
Identities = 36/141 (25%), Positives = 65/141 (46%), Gaps = 35/141 (24%)
Query: 29 DF-AQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLF 87
DF ++L G T+VG++G LSGGQR RI++ARA+ + + D+ SA+D
Sbjct: 126 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYE------ 179
Query: 88 EDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVD 147
S + + + K +TV++I H++ + + D
Sbjct: 180 ------------------------SEHVIMRNMHKIC----KGRTVIIIAHRLSTVKNAD 211
Query: 148 HVMLLEKGSVEAFGTTTQLLA 168
++++EKG + G +LL+
Sbjct: 212 RIIVMEKGKIVEQGKHKELLS 232
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; HET: ANP; 3.70A {Salmonella
typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A*
3b5z_A* 3b5w_A
Length = 582
Score = 69.1 bits (170), Expect = 4e-14
Identities = 40/165 (24%), Positives = 74/165 (44%), Gaps = 40/165 (24%)
Query: 11 GHPDPNSRRVVKVCALK----EDF-AQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKR 65
+ SR + A + DF ++ +G T++G+ GV LSGGQR RI++ARA+ +
Sbjct: 440 ARTEEYSREQI-EEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRD 498
Query: 66 ADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRT 125
+ + +LD+ SA+D + ++ AL
Sbjct: 499 SPILILDEATSALDTESERA------------------------------IQAAL----D 524
Query: 126 SFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASG 170
K +T ++I H++ + D ++++E G + GT ++LLA
Sbjct: 525 ELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQH 569
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance
regulator, residues 1193-1427...; CFTR, ABC transporter,
nucleotide binding domain, NBD; HET: B44; 2.70A {Homo
sapiens}
Length = 390
Score = 68.2 bits (167), Expect = 8e-14
Identities = 36/196 (18%), Positives = 67/196 (34%), Gaps = 39/196 (19%)
Query: 19 RVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAV 78
+V L+ Q P ++ D G LS G + + LAR+V +A + LLD+P + +
Sbjct: 127 KVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHL 186
Query: 79 DAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITH 138
D I ++ +F + TV+L
Sbjct: 187 DPVT------YQII---------------------------RRTLKQAF-ADCTVILCEA 212
Query: 139 QIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGLD-FTQLLDAPEEED----KAENEVDDN 193
+I+ + D +++E+ V + + +L D F + + K D
Sbjct: 213 RIEAMLECDQFLVIEENKVRQYDSILELYHYPADRFVAGFIGSPKMNFLPVKVTATAIDQ 272
Query: 194 ASGTLLHPRQSSVRVS 209
L P + V +
Sbjct: 273 VQVELPMPNRQQVWLP 288
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter,
ABCB6, nucleotide binding domain, heme BIOS transport
protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A*
3nhb_A*
Length = 306
Score = 67.6 bits (166), Expect = 9e-14
Identities = 35/187 (18%), Positives = 75/187 (40%), Gaps = 37/187 (19%)
Query: 11 GHPDPNSRRVVKVC--ALKEDF-AQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRAD 67
G + V A D P G RT VG++G+ LSGG++ R+++AR + K
Sbjct: 151 GRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPG 210
Query: 68 VYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSF 127
+ LLD+ SA+D + ++ +L+ V
Sbjct: 211 IILLDEATSALDTS------------------------------NERAIQASLAKV---- 236
Query: 128 LKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGLDFTQLLDAPEEEDKAE 187
+T +++ H++ + + D +++++ G + G LL+ G + + + +++
Sbjct: 237 CANRTTIVVAHRLSTVVNADQILVIKDGCIVERGRHEALLSRGGVYADMWQLQQGQEETS 296
Query: 188 NEVDDNA 194
+
Sbjct: 297 EDTKPQT 303
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial;
membrane protein, mitochondrial transport; HET: ACP LMT
CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Length = 595
Score = 67.6 bits (166), Expect = 2e-13
Identities = 46/169 (27%), Positives = 78/169 (46%), Gaps = 44/169 (26%)
Query: 29 DF-AQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLF 87
F P G T+VG+KGV LSGGQ+ RI++ARA+ K + LLD+ SA+DA
Sbjct: 464 AFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAE------ 517
Query: 88 EDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQ---IQYLT 144
+ V+ AL + +TV++I H+ I+
Sbjct: 518 ------------------------NEYLVQEALDRLM----DGRTVLVIAHRLSTIK--- 546
Query: 145 HVDHVMLLEKGSVEAFGTTTQLLA--SGLDFTQLLDAPEEEDKAENEVD 191
+ + V +L++G + +G +LL+ +G+ + +L++ AEN
Sbjct: 547 NANMVAVLDQGKITEYGKHEELLSKPNGI-YRKLMNKQSFISAAENLYF 594
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; 5.50A {Vibrio cholerae}
Length = 582
Score = 67.2 bits (165), Expect = 2e-13
Identities = 38/143 (26%), Positives = 66/143 (46%), Gaps = 35/143 (24%)
Query: 29 DF-AQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLF 87
+F +P G T++G+ G SLSGGQR R+++ARA+ + A V +LD+ SA+D +
Sbjct: 461 EFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERA-- 518
Query: 88 EDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVD 147
++ AL K KTV++I H++ + D
Sbjct: 519 ----------------------------IQAAL----DELQKNKTVLVIAHRLSTIEQAD 546
Query: 148 HVMLLEKGSVEAFGTTTQLLASG 170
++++++G + G LLA
Sbjct: 547 EILVVDEGEIIERGRHADLLAQD 569
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION
channel, transport protein, casse protein; 2.00A {Homo
sapiens} PDB: 2onj_A* 2hyd_A
Length = 578
Score = 60.7 bits (148), Expect = 4e-11
Identities = 41/143 (28%), Positives = 64/143 (44%), Gaps = 35/143 (24%)
Query: 29 DF-AQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLF 87
DF LP G T VG++GV LSGGQ+ R+S+AR + +LD+ SA+D +
Sbjct: 458 DFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQ 517
Query: 88 EDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVD 147
E AL LS RT+ ++ H++ +TH D
Sbjct: 518 E------------------------AL---DVLSKDRTTL-------IVAHRLSTITHAD 543
Query: 148 HVMLLEKGSVEAFGTTTQLLASG 170
++++E G + GT +L+A
Sbjct: 544 KIVVIENGHIVETGTHRELIAKQ 566
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase,
translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Length = 538
Score = 57.3 bits (139), Expect = 4e-10
Identities = 24/145 (16%), Positives = 50/145 (34%), Gaps = 39/145 (26%)
Query: 47 SLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWG 106
LSGG+ ++ +A + K AD+Y+LD P S +D
Sbjct: 385 DLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYI--------------------- 423
Query: 107 RSFFGSALGVRGALSLVRTSFLKE--KTVMLITHQIQYLTHV-DHVMLLE-KGSVEAFGT 162
++ +E +I H + ++ D +++ + + T
Sbjct: 424 ------------VAKAIK-RVTRERKAVTFIIDHDLSIHDYIADRIIVFKGEPEKAGLAT 470
Query: 163 TTQLLASGL-DFTQLLDAPEEEDKA 186
+ L +G+ +F + L+ D
Sbjct: 471 SPVTLKTGMNEFLRELEVTFRRDAE 495
Score = 52.7 bits (127), Expect = 1e-08
Identities = 26/133 (19%), Positives = 48/133 (36%), Gaps = 36/133 (27%)
Query: 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGR 107
LSGG R+ +A ++ + ADVY+ D P S +D
Sbjct: 139 LSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRE------------------------- 173
Query: 108 SFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHV-DHVMLLEKGSVEAFGTTTQL 166
+R LK K V+++ H + L ++ D + ++ S +G ++
Sbjct: 174 --------RMNMAKAIR-ELLKNKYVIVVDHDLIVLDYLTDLIHIIYGESSV-YGRVSKS 223
Query: 167 LASGLDFTQLLDA 179
A+ + L
Sbjct: 224 YAARVGINNFLKG 236
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET:
ATP; NMR {Saccharomyces cerevisiae}
Length = 608
Score = 56.2 bits (136), Expect = 1e-09
Identities = 28/138 (20%), Positives = 53/138 (38%), Gaps = 39/138 (28%)
Query: 47 SLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWG 106
LSGG+ R+++ A+ AD+YL+D+P + +D+
Sbjct: 467 HLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRII--------------------- 505
Query: 107 RSFFGSALGVRGALSLVRTSFLKE--KTVMLITHQIQYLTHV-DHVMLLEKG-SVEAFGT 162
++R F+ KT ++ H T++ D V++ E S A
Sbjct: 506 ------------CSKVIR-RFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHAR 552
Query: 163 TTQLLASGLD-FTQLLDA 179
+ L +G + F + L+
Sbjct: 553 APESLLTGCNRFLKNLNV 570
Score = 50.8 bits (122), Expect = 7e-08
Identities = 26/135 (19%), Positives = 47/135 (34%), Gaps = 39/135 (28%)
Query: 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGR 107
LSGG+ R ++ + + ADVY+ D+P S +D +
Sbjct: 222 LSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNA--------------------- 260
Query: 108 SFFGSALGVRGALSLVRTSFLKE--KTVMLITHQIQYLTHV-DHVMLLEKGSVEAFGTTT 164
++R+ L K V+ + H + L ++ D V ++ G +G T
Sbjct: 261 ------------AQIIRS--LLAPTKYVICVEHDLSVLDYLSDFVCIIY-GVPSVYGVVT 305
Query: 165 QLLASGLDFTQLLDA 179
+ LD
Sbjct: 306 LPASVREGINIFLDG 320
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane
protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Length = 240
Score = 54.1 bits (131), Expect = 3e-09
Identities = 19/33 (57%), Positives = 26/33 (78%)
Query: 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVDA 80
LSGG+R R++LARA+ + + LLD+PLSAVD
Sbjct: 127 LSGGERQRVALARALVIQPRLLLLDEPLSAVDL 159
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette,
hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Length = 279
Score = 53.8 bits (130), Expect = 4e-09
Identities = 22/135 (16%), Positives = 46/135 (34%), Gaps = 33/135 (24%)
Query: 47 SLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWG 106
LS G++ R+ +ARA+ + V +LD+P + +D + + L
Sbjct: 161 YLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFI-ARESLLSILDSLSDS--------- 210
Query: 107 RSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQ-YLTHVDHVMLLEKGSVEAFGTTTQ 165
++ +TH I+ + ++LL+ G G
Sbjct: 211 ---------------------YPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAVED 249
Query: 166 LLASGLDFTQLLDAP 180
+L S + ++
Sbjct: 250 ILTS-ENMSRFFQKN 263
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural
genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Length = 263
Score = 53.1 bits (128), Expect = 9e-09
Identities = 11/41 (26%), Positives = 19/41 (46%)
Query: 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFE 88
LS GQ + + A+ + ++ LD+P VDA +
Sbjct: 129 LSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISR 169
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta
motif, beta sandwich, ligand binding protein; 1.90A
{Alicyclobacillus acidocaldarius}
Length = 355
Score = 53.0 bits (128), Expect = 1e-08
Identities = 18/39 (46%), Positives = 27/39 (69%)
Query: 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHL 86
LSGGQ+ R++LARA+ R V L D+P +A+D + + L
Sbjct: 146 LSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRREL 184
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur
cluster, adenosine diphosphate, nucleotide-binding; HET:
ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Length = 607
Score = 51.9 bits (125), Expect = 3e-08
Identities = 26/144 (18%), Positives = 54/144 (37%), Gaps = 39/144 (27%)
Query: 47 SLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWG 106
LSGG+ R+++A + + AD+YLLD+P + +D
Sbjct: 471 DLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVE------------------------- 505
Query: 107 RSFFGSALGVRGALSLVRTSFLKE--KTVMLITHQIQYLTHV-DHVMLLE-KGSVEAFGT 162
R A+S +++ KT +++ H + + +V D +++ E +
Sbjct: 506 ---------QRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRAL 556
Query: 163 TTQLLASGLD-FTQLLDAPEEEDK 185
+ G++ F + D
Sbjct: 557 PPMGMREGMNRFLASVGITFRRDP 580
Score = 45.0 bits (107), Expect = 6e-06
Identities = 20/114 (17%), Positives = 40/114 (35%), Gaps = 38/114 (33%)
Query: 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGR 107
LSGG+ R+++A A+ ++A Y D+P S +D
Sbjct: 229 LSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQ------------------------- 263
Query: 108 SFFGSALGVRGALSLVRTSFLKE--KTVMLITHQIQYLTHV-DHVMLLEKGSVE 158
++R L K V+++ H + L ++ D + ++
Sbjct: 264 --------RLKVARVIR--RLANEGKAVLVVEHDLAVLDYLSDVIHVVYGEPGV 307
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein;
ATP-binding, nucleotide-binding, membrane,
transmembrane, transport protein; 3.00A {Methanosarcina
acetivorans} SCOP: b.40.6.3 c.37.1.12
Length = 348
Score = 51.8 bits (125), Expect = 3e-08
Identities = 17/33 (51%), Positives = 25/33 (75%)
Query: 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVDA 80
LSGG++ R++LARA+ + LLD+PLSA+D
Sbjct: 128 LSGGEQQRVALARALVTNPKILLLDEPLSALDP 160
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis,
hydrolyase/translation complex; HET: ADP; 1.90A
{Pyrococcus furiosus}
Length = 538
Score = 51.1 bits (123), Expect = 5e-08
Identities = 14/36 (38%), Positives = 24/36 (66%)
Query: 47 SLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHV 82
LSGG+ R+++A + + AD+YLLD+P + +D
Sbjct: 401 ELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQ 436
Score = 43.4 bits (103), Expect = 2e-05
Identities = 22/114 (19%), Positives = 41/114 (35%), Gaps = 38/114 (33%)
Query: 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGR 107
LSGG+ R+++A A+ + A Y D+P S +D
Sbjct: 159 LSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQ------------------------- 193
Query: 108 SFFGSALGVRGALSLVRTSFLKE--KTVMLITHQIQYLTHV-DHVMLLEKGSVE 158
A +R L E K+V+++ H + L ++ D + ++
Sbjct: 194 --------RLNAARAIRR--LSEEGKSVLVVEHDLAVLDYLSDIIHVVYGEPGV 237
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase,
ATP-binding cassette, ATPase, transport protein; 1.45A
{Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB:
1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Length = 353
Score = 50.7 bits (122), Expect = 6e-08
Identities = 17/33 (51%), Positives = 24/33 (72%)
Query: 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVDA 80
LSG Q+ R++LARA+ K + LLD+P S +DA
Sbjct: 141 LSGAQQQRVALARALVKDPSLLLLDEPFSNLDA 173
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding
domain, ABC motor domain, ferric iron transport, cell
inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Length = 359
Score = 49.9 bits (120), Expect = 1e-07
Identities = 17/35 (48%), Positives = 25/35 (71%)
Query: 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHV 82
LSGGQ+ R +LARA+ ++ LLD+P SA+D +
Sbjct: 139 LSGGQQQRAALARALAPDPELILLDEPFSALDEQL 173
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding
protein; structural genomics, NPPSFA; 1.94A {Pyrococcus
horikoshii}
Length = 362
Score = 49.1 bits (118), Expect = 3e-07
Identities = 19/33 (57%), Positives = 27/33 (81%)
Query: 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVDA 80
LSGGQ+ R+++ARA+ K +V LLD+PLS +DA
Sbjct: 134 LSGGQQQRVAIARALVKEPEVLLLDEPLSNLDA 166
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active
transport, sugar uptake and regulation, transport
protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3
b.40.6.3 c.37.1.12 PDB: 1vci_A*
Length = 372
Score = 47.6 bits (114), Expect = 8e-07
Identities = 19/33 (57%), Positives = 26/33 (78%)
Query: 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVDA 80
LSGGQR R+++ARA+ DV L+D+PLS +DA
Sbjct: 142 LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDA 174
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha
and beta proteins (A/B) TM0421, structural genomics,
NPPSFA; 2.11A {Thermotoga maritima}
Length = 359
Score = 47.6 bits (114), Expect = 8e-07
Identities = 19/33 (57%), Positives = 26/33 (78%)
Query: 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVDA 80
LSGGQ+ R++LARA+ K+ V L D+PLS +DA
Sbjct: 134 LSGGQQQRVALARALVKQPKVLLFDEPLSNLDA 166
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative
iron chelatin ABC transporter, nucleotide binding
domain; 2.40A {Haemophilus influenzae}
Length = 253
Score = 46.8 bits (112), Expect = 1e-06
Identities = 34/123 (27%), Positives = 48/123 (39%), Gaps = 36/123 (29%)
Query: 47 SLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWG 106
SLSGGQR I +ARA+ + LLD+P SA+D
Sbjct: 128 SLSGGQRQLILIARAIASECKLILLDEPTSALD--------------------------- 160
Query: 107 RSFFGSALGVRGALSLVRTSFLKE-KTVMLITHQIQY-LTHVDHVMLLEKGSVEAFGTTT 164
+ V LSL+ + TV+ THQ + + +LL K + FG T
Sbjct: 161 ---LANQDIV---LSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQNF-KFGETR 213
Query: 165 QLL 167
+L
Sbjct: 214 NIL 216
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport,
maltose uptake and regulation, sugar binding protein;
1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3
c.37.1.12 PDB: 2d62_A
Length = 372
Score = 46.8 bits (112), Expect = 1e-06
Identities = 18/33 (54%), Positives = 27/33 (81%)
Query: 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVDA 80
LSGGQR R++L RA+ ++ V+L+D+PLS +DA
Sbjct: 140 LSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDA 172
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt
transport, TM02 hydrolase, inner membrane, membrane,
nucleotide-binding; 2.30A {Thermotoga maritima}
Length = 266
Score = 45.3 bits (108), Expect = 4e-06
Identities = 33/123 (26%), Positives = 51/123 (41%), Gaps = 34/123 (27%)
Query: 47 SLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWG 106
LSGG++ R+++A + D+ +LD+PL +D
Sbjct: 138 FLSGGEKRRVAIASVIVHEPDILILDEPLVGLD-------------------RE------ 172
Query: 107 RSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQY-LTHVDHVMLLEKGSVEAFGTTTQ 165
G L +V KTV+LI+H I+ + HVD V++LEKG GT +
Sbjct: 173 --------GKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRME 224
Query: 166 LLA 168
L
Sbjct: 225 FLE 227
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein
biosynthesis, nucleotide-binding, phosphorylation, RNA-
binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces
cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Length = 986
Score = 45.8 bits (108), Expect = 5e-06
Identities = 15/28 (53%), Positives = 23/28 (82%)
Query: 47 SLSGGQRARISLARAVYKRADVYLLDDP 74
+LSGG + +++LARAV + AD+ LLD+P
Sbjct: 548 ALSGGWKMKLALARAVLRNADILLLDEP 575
Score = 45.0 bits (106), Expect = 8e-06
Identities = 23/116 (19%), Positives = 45/116 (38%), Gaps = 37/116 (31%)
Query: 47 SLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWG 106
LSGGQ+ ++ LA ++R + +LD+P + +L D + L + F
Sbjct: 901 GLSGGQKVKLVLAAGTWQRPHLIVLDEPTN--------YLDRDSLGALSKALKEF----- 947
Query: 107 RSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHV-DHVMLLEKGSVEAFG 161
E V++ITH ++ ++ + V ++ G + G
Sbjct: 948 -----------------------EGGVIIITHSAEFTKNLTEEVWAVKDGRMTPSG 980
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral
membrane protein, ATPase, ABC transporter, membrane
transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia
coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A*
3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Length = 381
Score = 42.9 bits (102), Expect = 3e-05
Identities = 17/33 (51%), Positives = 24/33 (72%)
Query: 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVDA 80
LSGGQR R+++ R + V+LLD+PLS +DA
Sbjct: 134 LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDA 166
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288;
multidrug transporter, transport protein; HET: ANP;
2.90A {Thermotoga maritima}
Length = 598
Score = 42.2 bits (100), Expect = 6e-05
Identities = 18/48 (37%), Positives = 26/48 (54%)
Query: 32 QLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVD 79
LP G T++ D G LS GQR +++ RA + +LD+ S VD
Sbjct: 476 HLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVD 523
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell
membrane, cobalt transport, hydrolase, ION transport;
2.30A {Clostridium perfringens atcc 13124}
Length = 275
Score = 41.8 bits (99), Expect = 7e-05
Identities = 24/135 (17%), Positives = 49/135 (36%), Gaps = 34/135 (25%)
Query: 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGR 107
LS GQ+ R+++A + V +LD+P + +D +G + +
Sbjct: 144 LSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDP-MGVSEIMKLLVEMQKE---------- 192
Query: 108 SFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQY-LTHVDHVMLLEKGSVEAFGTTTQL 166
T+++ TH I + D+V ++++G V G ++
Sbjct: 193 ---------------------LGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEV 231
Query: 167 LASGLDFTQL-LDAP 180
A ++ L P
Sbjct: 232 FAEKEVIRKVNLRLP 246
>1sgw_A Putative ABC transporter; structural genomics, P protein structure
initiative, southeast collaboratory for S genomics,
secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Length = 214
Score = 40.2 bits (95), Expect = 2e-04
Identities = 20/111 (18%), Positives = 38/111 (34%), Gaps = 35/111 (31%)
Query: 47 SLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWG 106
LS G R+ LA + A++Y+LDDP+ A+D + +
Sbjct: 133 ELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLK------------------ 174
Query: 107 RSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSV 157
+ ++ V++ + + L++ D L K S
Sbjct: 175 ---------------SILEILKEKGIVIISSR--EELSYCDVNENLHKYST 208
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold,
coiled-coils, ATP binding, DNA bindi MRE11, replication;
HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A*
1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Length = 339
Score = 40.0 bits (93), Expect = 3e-04
Identities = 19/114 (16%), Positives = 35/114 (30%), Gaps = 39/114 (34%)
Query: 48 LSGGQRARISLA------RAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRF 101
LSGG+R + LA + + +LD+P L
Sbjct: 249 LSGGERIALGLAFRLAMSLYLAGEISLLILDEPTP----------------YLDEE---- 288
Query: 102 DSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKG 155
R ++++ K V+L++H + DHV+ +
Sbjct: 289 -------------RRRKLITIMERYLKKIPQVILVSHDEELKDAADHVIRISLE 329
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint
center for structural genomics, JCSG, protein structu
initiative, PSI; 2.10A {Thermotoga maritima} SCOP:
c.37.1.12
Length = 256
Score = 39.1 bits (92), Expect = 5e-04
Identities = 19/129 (14%), Positives = 45/129 (34%), Gaps = 44/129 (34%)
Query: 47 SLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWG 106
+ S G ++ +ARA+ + +LD+P S +D + + +
Sbjct: 146 TYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRK------------------ 187
Query: 107 RSFFGSALGVRGALSLVRTSFLKE--KTVMLITHQIQYLTHV----DHVMLLEKGSVEAF 160
+++ + T+++ +H + V D + L+ G++
Sbjct: 188 ---------------ILKQ--ASQEGLTILVSSH---NMLEVEFLCDRIALIHNGTIVET 227
Query: 161 GTTTQLLAS 169
GT +L
Sbjct: 228 GTVEELKER 236
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane,
membrane, transmembrane, transport, ATP- binding,
hydrolase, nucleotide-binding, periplasm; HET: 1PE;
2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Length = 249
Score = 37.9 bits (89), Expect = 0.001
Identities = 22/130 (16%), Positives = 43/130 (33%), Gaps = 43/130 (33%)
Query: 47 SLSGGQRARISLARA-------VYKRADVYLLDDPLSAVD-AHVGKHLFEDCITGLHTGV 98
LSGG+ R+ LA + LLD+P++++D A
Sbjct: 126 QLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQ----------------- 168
Query: 99 PRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQI-QYLTHVDHVMLLEKGSV 157
+ ++ + +++ +H + L H LL+ G +
Sbjct: 169 --------------QSAL---DKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKM 211
Query: 158 EAFGTTTQLL 167
A G ++L
Sbjct: 212 LASGRREEVL 221
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET:
ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A*
2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Length = 263
Score = 36.4 bits (85), Expect = 0.003
Identities = 16/33 (48%), Positives = 23/33 (69%)
Query: 47 SLSGGQRARISLARAVYKRADVYLLDDPLSAVD 79
SLSGGQ R+++ARA+ + L D+P SA+D
Sbjct: 159 SLSGGQAQRVAIARALAMEPKIMLFDEPTSALD 191
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP;
1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Length = 262
Score = 36.4 bits (85), Expect = 0.004
Identities = 18/33 (54%), Positives = 24/33 (72%)
Query: 47 SLSGGQRARISLARAVYKRADVYLLDDPLSAVD 79
LSGGQ+ R+S+ARA+ DV L D+P SA+D
Sbjct: 153 HLSGGQQQRVSIARALAMEPDVLLFDEPTSALD 185
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I
ABC type importer, methionine uptake transporter,
membrane protein; HET: ADP; 2.90A {Escherichia coli}
PDB: 3tuj_C 3tuz_C* 3dhw_C
Length = 366
Score = 36.5 bits (85), Expect = 0.004
Identities = 36/181 (19%), Positives = 63/181 (34%), Gaps = 46/181 (25%)
Query: 40 LVG--DKGVS----LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITG 93
LVG DK S LSGGQ+ R+++ARA+ V L D SA+ D T
Sbjct: 150 LVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSAL----------DPAT- 198
Query: 94 LHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEK---TVMLITHQIQYLTHV-DHV 149
R L L++ + + T++LITH++ + + D V
Sbjct: 199 ----------------------TRSILELLKD--INRRLGLTILLITHEMDVVKRICDCV 234
Query: 150 MLLEKGSVEAFGTTTQLLAS-GLDFTQLLDAPEEEDKAENEVDDNASGTLLHPRQSSVRV 208
++ G + T +++ + Q + + +R+
Sbjct: 235 AVISNGELIEQDTVSEVFSHPKTPLAQKFIQSTLHLDIPEDYQERLQAEPFTDCVPMLRL 294
Query: 209 S 209
Sbjct: 295 E 295
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein;
structural genomics; 1.70A {Aquifex aeolicus} PDB:
2pcl_A
Length = 224
Score = 34.0 bits (79), Expect = 0.018
Identities = 12/41 (29%), Positives = 24/41 (58%)
Query: 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFE 88
LSGG++ R+++ARA+ + D+P +D+ K + +
Sbjct: 141 LSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMD 181
>3tif_A Uncharacterized ABC transporter ATP-binding prote;
nucleotide-binding domain, ABC transporter ATPase; HET:
ADP; 1.80A {Methanocaldococcus jannaschii dsm
2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Length = 235
Score = 34.1 bits (79), Expect = 0.019
Identities = 15/37 (40%), Positives = 24/37 (64%)
Query: 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGK 84
LSGGQ+ R+++ARA+ + L D P A+D+ G+
Sbjct: 146 LSGGQQQRVAIARALANNPPIILADQPTWALDSKTGE 182
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 34.1 bits (77), Expect = 0.029
Identities = 25/146 (17%), Positives = 52/146 (35%), Gaps = 27/146 (18%)
Query: 63 YKRADVYLLDD-PLSAVD----AHVGKHLFEDCITGLHTGVPR--FDSRWGRSFFGSALG 115
Y + DD +D +H+G HL T D R+
Sbjct: 453 YNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRF---------- 502
Query: 116 VRGALSLVRTSFLKEKTVMLITHQIQ-YLTHV-DHVMLLEK--GSVEAF--GTTTQLLAS 169
+ + T++ +++ Q++ Y ++ D+ E+ ++ F L+ S
Sbjct: 503 LEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICS 562
Query: 170 -GLDFTQL-LDAPEEE--DKAENEVD 191
D ++ L A +E ++A +V
Sbjct: 563 KYTDLLRIALMAEDEAIFEEAHKQVQ 588
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 32.7 bits (74), Expect = 0.094
Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 5/43 (11%)
Query: 152 LEKGSVE-AFGTTTQLL--ASGL--DFTQLLDAPEEEDKAENE 189
L GS+E T AS L F ++L P E A++E
Sbjct: 11 LSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDE 53
Score = 32.3 bits (73), Expect = 0.13
Identities = 25/204 (12%), Positives = 55/204 (26%), Gaps = 61/204 (29%)
Query: 26 LKEDFAQ-LPSGDRTLVGDKGVSLSGGQRARISL-AR------AVYKRADVYLLDDPLSA 77
L+E F + LP D + L + ++ + + V D L+
Sbjct: 33 LQEQFNKILPEPTEGFAADDEPT------TPAELVGKFLGYVSSLVEPSKVGQFDQVLNL 86
Query: 78 VDAHVGKHLFEDCI---TGLHTGVPRFDS----------RWGRSFFGSALGVRGALSLVR 124
FE+C +H + +++ + + +
Sbjct: 87 CLTE-----FENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKS 141
Query: 125 TSFL------KEKTVMLI----------------THQIQYLTHVDHVM-----LLEKGSV 157
S L ++ I +Q Y V ++ L + +
Sbjct: 142 NSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQT-YHVLVGDLIKFSAETLSE-LI 199
Query: 158 EAFGTTTQLLASGLDFTQLLDAPE 181
++ GL+ + L+ P
Sbjct: 200 RTTLDAEKVFTQGLNILEWLENPS 223
Score = 31.9 bits (72), Expect = 0.14
Identities = 21/113 (18%), Positives = 32/113 (28%), Gaps = 41/113 (36%)
Query: 50 GGQ--------RARISLARAVYKRADVYL------------LDDPLSAV---DAHVGKHL 86
G Q A+ V+ RAD + +++P++ GK +
Sbjct: 1625 GSQEQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRI 1684
Query: 87 --------FEDCITGLHTGVPRFDSRWGRS----FFGSALGVRGALSLVRTSF 127
FE + G F S F +G LS T F
Sbjct: 1685 RENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSE----KGLLSA--TQF 1731
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair,
nucleotide excision repai hydrolase-DNA complex; HET:
DNA; 2.90A {Thermotoga maritima}
Length = 916
Score = 31.3 bits (72), Expect = 0.26
Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 19/52 (36%)
Query: 48 LSGGQRARISLARAVYKRAD---VYLLDDPLSAVDAHVGKHLFEDCITGLHT 96
LSGG+ RI LA + KR +Y+LD+P GLH
Sbjct: 806 LSGGEAQRIKLASELRKRDTGRTLYILDEP----------------TVGLHF 841
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication;
1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB:
1f2u_B* 1us8_B*
Length = 148
Score = 30.1 bits (68), Expect = 0.31
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 6/34 (17%)
Query: 47 SLSGGQRARISLA------RAVYKRADVYLLDDP 74
LSGG+R + LA + + +LD+P
Sbjct: 57 FLSGGERIALGLAFRLAMSLYLAGEISLLILDEP 90
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA
repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A
{Geobacillus}
Length = 670
Score = 30.6 bits (70), Expect = 0.41
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 19/52 (36%)
Query: 48 LSGGQRARISLARAVYKRAD---VYLLDDPLSAVDAHVGKHLFEDCITGLHT 96
LSGG+ R+ LA +++R++ +Y+LD+P TGLH
Sbjct: 544 LSGGEAQRVKLAAELHRRSNGRTLYILDEP----------------TTGLHV 579
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding
protein; beta-core domain; HET: ADP; 1.60A
{Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB:
1gaj_A 1g9x_A*
Length = 257
Score = 30.2 bits (69), Expect = 0.43
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 47 SLSGGQRARISLARAVYKRADVYLLDDP 74
LSGGQ + + RA+ + ++D+P
Sbjct: 153 ELSGGQMKLVEIGRALMTNPKMIVMDEP 180
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair;
3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Length = 993
Score = 30.2 bits (69), Expect = 0.49
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 19/52 (36%)
Query: 48 LSGGQRARISLARAVYKRAD---VYLLDDPLSAVDAHVGKHLFEDCITGLHT 96
LSGG+ R+ LA + KR+ VY+LD+P TGLH
Sbjct: 864 LSGGEAQRVKLASELQKRSTGRTVYILDEP----------------TTGLHF 899
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA
repair, ABC ATPase, at cassette, DNA damage, DNA
excision; HET: ADP; 3.20A {Geobacillus
stearothermophilus} PDB: 3uwx_A
Length = 972
Score = 30.2 bits (69), Expect = 0.50
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 19/52 (36%)
Query: 48 LSGGQRARISLARAVYKRAD---VYLLDDPLSAVDAHVGKHLFEDCITGLHT 96
LSGG+ R+ LA +++R++ +Y+LD+P TGLH
Sbjct: 846 LSGGEAQRVKLAAELHRRSNGRTLYILDEP----------------TTGLHV 881
>3tv9_A Putative peptide maturation protein; structural genomics, center
for structural genomics of infec diseases, csgid,
alpha-beta, cytosol; 2.50A {Shigella flexneri}
Length = 457
Score = 29.2 bits (66), Expect = 0.98
Identities = 8/32 (25%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 101 FDSRWGRSFFGSALGVRGALSLVR-TSFLKEK 131
F + FG +G S+ R ++FL +
Sbjct: 258 FANEVATGLFGHLVGAIAGGSVYRKSTFLLDS 289
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein,
nucleotide-binding, zinc-binding domain, SOS response,
metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans}
PDB: 2vf8_A*
Length = 842
Score = 29.4 bits (67), Expect = 1.0
Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 19/52 (36%)
Query: 48 LSGGQRARISLARAVYKRAD---VYLLDDPLSAVDAHVGKHLFEDCITGLHT 96
LSGG+ RI LA + + VY+LD+P TGLH
Sbjct: 731 LSGGEAQRIKLATELRRSGRGGTVYVLDEP----------------TTGLHP 766
>3qtd_A PMBA protein; putative modulator of gyrase (PMBA), structural
genomics, PS biology, midwest center for structural
genomics, MCSG; 2.70A {Pseudomonas aeruginosa}
Length = 449
Score = 28.8 bits (65), Expect = 1.2
Identities = 11/32 (34%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 101 FDSRWGRSFFGSALGVRGALSLVR-TSFLKEK 131
F FG LG SL R +SFL+
Sbjct: 247 FAPEIAVGLFGHFLGAISGGSLYRKSSFLEGA 278
>1vpb_A Putative modulator of DNA gyrase; structural genomics, joint for
structural genomics, JCSG, protein structure initiative
hydrolase; 1.75A {Bacteroides thetaiotaomicron} SCOP:
d.283.1.1
Length = 451
Score = 28.8 bits (65), Expect = 1.5
Identities = 6/32 (18%), Positives = 9/32 (28%), Gaps = 1/32 (3%)
Query: 101 FDSRWGRSFFGSALGVRGALSLVR-TSFLKEK 131
D + +L + SFL K
Sbjct: 251 VDPMNSSRLLSPMISALNGSALQQKNSFLLNK 282
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC
transporter ATPase domain-like; HET: DNA ADP; 2.70A
{Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Length = 371
Score = 26.7 bits (59), Expect = 5.8
Identities = 10/41 (24%), Positives = 21/41 (51%), Gaps = 7/41 (17%)
Query: 47 SLSGGQRARISLA-------RAVYKRADVYLLDDPLSAVDA 80
+LSGG++ ++L+ + R + +LD+P +D
Sbjct: 280 NLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDE 320
>3n2o_A ADC, biosynthetic arginine decarboxylase; lyase; HET: PLP; 2.30A
{Vibrio vulnificus}
Length = 648
Score = 26.4 bits (58), Expect = 9.9
Identities = 11/44 (25%), Positives = 17/44 (38%), Gaps = 4/44 (9%)
Query: 49 SGGQRAR----ISLARAVYKRADVYLLDDPLSAVDAHVGKHLFE 88
SGG++++ S V R D L V H+G +
Sbjct: 219 SGGEKSKFGLSASQVLNVISRLKKENQLDTLQLVHFHLGSQMAN 262
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.136 0.396
Gapped
Lambda K H
0.267 0.0792 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,192,843
Number of extensions: 188351
Number of successful extensions: 440
Number of sequences better than 10.0: 1
Number of HSP's gapped: 433
Number of HSP's successfully gapped: 94
Length of query: 209
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 120
Effective length of database: 4,216,824
Effective search space: 506018880
Effective search space used: 506018880
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (24.8 bits)