RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12535
(209 letters)
>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter
MsbA, C-terminal domain {Salmonella typhimurium [TaxId:
90371]}
Length = 253
Score = 108 bits (271), Expect = 1e-29
Identities = 37/176 (21%), Positives = 73/176 (41%), Gaps = 34/176 (19%)
Query: 1 MGPILAPMGPGHPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLAR 60
I + ++ + ++ +G T++G+ GV LSGGQR RI++AR
Sbjct: 106 ANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIAR 165
Query: 61 AVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGAL 120
A+ + + + +LD+ SA+D + + + L
Sbjct: 166 ALLRDSPILILDEATSALDTESERAIQA-ALDELQ------------------------- 199
Query: 121 SLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGLDFTQL 176
K +T ++I H++ + D ++++E G + GT ++LLA + QL
Sbjct: 200 --------KNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQHGVYAQL 247
>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export
ATP-binding/permease protein SAV1866 {Staphylococcus
aureus [TaxId: 1280]}
Length = 255
Score = 105 bits (264), Expect = 1e-28
Identities = 40/170 (23%), Positives = 69/170 (40%), Gaps = 34/170 (20%)
Query: 10 PGHPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVY 69
P D K+ + LP G T VG++GV LSGGQ+ R+S+AR +
Sbjct: 117 PTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPIL 176
Query: 70 LLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLK 129
+LD+ SA+D + E + L K
Sbjct: 177 ILDEATSALDLESESIIQE-ALDVLS---------------------------------K 202
Query: 130 EKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGLDFTQLLDA 179
++T +++ H++ +TH D ++++E G + GT +L+A + L
Sbjct: 203 DRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQGAYEHLYSI 252
>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance
regulator, CFTR, nucleotide-binding domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 281
Score = 105 bits (264), Expect = 2e-28
Identities = 58/182 (31%), Positives = 90/182 (49%), Gaps = 33/182 (18%)
Query: 8 MGPGHPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRAD 67
G + + + VVK C L++D + D T++G+ GV+LSGGQRARISLARAVYK AD
Sbjct: 119 FGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDAD 178
Query: 68 VYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSF 127
+YLLD P +D + +FE C+ L
Sbjct: 179 LYLLDSPFGYLDVFTEEQVFESCVCKLMAN------------------------------ 208
Query: 128 LKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGLDFTQLLDAPEEEDKAE 187
KT +L+T ++++L D +++L +GS +GT ++L + DF+ L + D+
Sbjct: 209 ---KTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLRPDFSSKLMGYDTFDQFT 265
Query: 188 NE 189
E
Sbjct: 266 EE 267
>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 251
Score = 95.7 bits (238), Expect = 6e-25
Identities = 40/176 (22%), Positives = 67/176 (38%), Gaps = 32/176 (18%)
Query: 4 ILAPMGPGHPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVY 63
I + + LP G T V + G LSGGQR ++LARA+
Sbjct: 108 IAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALI 167
Query: 64 KRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLV 123
++ V +LDD SA+DA+ + + L
Sbjct: 168 RKPCVLILDDATSALDANSQLQVEQ--------------------------------LLY 195
Query: 124 RTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGLDFTQLLDA 179
+ ++V+LIT + + DH++ LE G++ GT QL+ + ++ A
Sbjct: 196 ESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEKKGCYWAMVQA 251
>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA,
C-terminal domain {Lactococcus lactis [TaxId: 1358]}
Length = 242
Score = 93.8 bits (233), Expect = 3e-24
Identities = 32/174 (18%), Positives = 73/174 (41%), Gaps = 34/174 (19%)
Query: 4 ILAPMGPGHPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVY 63
+ + + D + +V+ + + +P T VG++GV +SGGQR R+++ARA
Sbjct: 96 LTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFL 155
Query: 64 KRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLV 123
+ + +LD+ +++D+ + +
Sbjct: 156 RNPKILMLDEATASLDSESESMVQKALD-------------------------------- 183
Query: 124 RTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLASGLDFTQLL 177
S +K +T ++I H++ + D + +EKG + G +L+A+ + + +
Sbjct: 184 --SLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAKYV 235
>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein
{Escherichia coli [TaxId: 562]}
Length = 241
Score = 87.7 bits (217), Expect = 6e-22
Identities = 37/173 (21%), Positives = 71/173 (41%), Gaps = 35/173 (20%)
Query: 5 LAPMGPGHPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYK 64
++ PG K+ + ++L G T+VG++G LSGGQR RI++ARA+
Sbjct: 97 ISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVN 156
Query: 65 RADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVR 124
+ + D+ SA+D + +
Sbjct: 157 NPKILIFDEATSALDYESEHVIMRNM---------------------------------- 182
Query: 125 TSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTTTQLLA-SGLDFTQL 176
K +TV++I H++ + + D ++++EKG + G +LL+ ++ L
Sbjct: 183 HKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYL 235
>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal
domain {Pyrococcus horikoshii [TaxId: 53953]}
Length = 239
Score = 55.6 bits (134), Expect = 3e-10
Identities = 26/123 (21%), Positives = 50/123 (40%), Gaps = 33/123 (26%)
Query: 47 SLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWG 106
LSGGQR R+++ARA+ DV L+D+PLS +DA + + +
Sbjct: 136 QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAE----------------- 178
Query: 107 RSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHV-DHVMLLEKGSVEAFGTTTQ 165
+ + + T + +TH + D + ++ +G + G+ T+
Sbjct: 179 ---------------IKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTE 223
Query: 166 LLA 168
+
Sbjct: 224 VYL 226
>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK,
N-terminal domain {Archaeon Thermococcus litoralis
[TaxId: 2265]}
Length = 240
Score = 54.2 bits (130), Expect = 1e-09
Identities = 24/123 (19%), Positives = 49/123 (39%), Gaps = 33/123 (26%)
Query: 47 SLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWG 106
LSGGQR R++L RA+ ++ V+L+D+PLS +DA + + +
Sbjct: 139 ELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELK--------------- 183
Query: 107 RSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHV-DHVMLLEKGSVEAFGTTTQ 165
+ T + +TH + D + ++ +G ++ G+ +
Sbjct: 184 -----------------KLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDE 226
Query: 166 LLA 168
+
Sbjct: 227 VYD 229
>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter
{Thermotoga maritima, TM1139 [TaxId: 2336]}
Length = 240
Score = 52.6 bits (126), Expect = 4e-09
Identities = 19/124 (15%), Positives = 45/124 (36%), Gaps = 34/124 (27%)
Query: 47 SLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWG 106
+LSGG++ +++ RA+ R + ++D+P + + + I ++
Sbjct: 139 TLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPIL-VSEVFEVIQKINQ---------- 187
Query: 107 RSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQY-LTHVDHVMLLEKGSVEAFGTTTQ 165
+ T++L+ L + +LE G + G ++
Sbjct: 188 ----------------------EGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASE 225
Query: 166 LLAS 169
LL +
Sbjct: 226 LLDN 229
>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 230
Score = 52.1 bits (125), Expect = 5e-09
Identities = 27/116 (23%), Positives = 47/116 (40%), Gaps = 32/116 (27%)
Query: 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGR 107
LSGGQ+ R+++ARA+ + L D P A+D+ G+ + + + L+
Sbjct: 146 LSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQL-LKKLN------------ 192
Query: 108 SFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKGSVEAFGTT 163
G KTV+++TH I + ++ L+ G VE
Sbjct: 193 ----EEDG---------------KTVVVVTHDINVARFGERIIYLKDGEVEREEKL 229
>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine
permease {Salmonella typhimurium [TaxId: 90371]}
Length = 258
Score = 52.5 bits (126), Expect = 5e-09
Identities = 32/124 (25%), Positives = 52/124 (41%), Gaps = 34/124 (27%)
Query: 47 SLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWG 106
LSGGQ+ R+S+ARA+ DV L D+P SA+D + + G
Sbjct: 149 HLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEG--------- 199
Query: 107 RSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHV-DHVMLLEKGSVEAFGTTTQ 165
KT++++TH++ + HV HV+ L +G +E G Q
Sbjct: 200 ------------------------KTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQ 235
Query: 166 LLAS 169
+ +
Sbjct: 236 VFGN 239
>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 254
Score = 49.2 bits (117), Expect = 6e-08
Identities = 30/182 (16%), Positives = 67/182 (36%), Gaps = 36/182 (19%)
Query: 1 MGPILAPMGPGHPDPNSRRVVKVCALKEDFAQLPS--GDRTLVGDKGVSLSGGQRARISL 58
+G I P + + + K + E ++ L K LSGGQ + +
Sbjct: 102 IGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEI 161
Query: 59 ARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRG 118
RA+ + ++D+P++ V + +F + + L
Sbjct: 162 GRALMTNPKMIVMDEPIAGVAPGLAHDIF-NHVLELKA---------------------- 198
Query: 119 ALSLVRTSFLKEKTVMLITHQIQY-LTHVDHVMLLEKGSVEAFGTTTQLLASGLDFTQLL 177
K T ++I H++ L ++DH+ ++ G + A G + + + L +++
Sbjct: 199 ----------KGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIKNVLSDPKVV 248
Query: 178 DA 179
+
Sbjct: 249 EI 250
>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein
MetN {Escherichia coli [TaxId: 562]}
Length = 240
Score = 48.3 bits (115), Expect = 1e-07
Identities = 26/124 (20%), Positives = 50/124 (40%), Gaps = 33/124 (26%)
Query: 47 SLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWG 106
+LSGGQ+ R+++ARA+ V L D+ SA+D + + E +
Sbjct: 140 NLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELL-------------KDI 186
Query: 107 RSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHV-DHVMLLEKGSVEAFGTTTQ 165
G T++LITH++ + + D V ++ G + T ++
Sbjct: 187 NRRLG-------------------LTILLITHEMDVVKRICDCVAVISNGELIEQDTVSE 227
Query: 166 LLAS 169
+ +
Sbjct: 228 VFSH 231
>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 232
Score = 47.3 bits (112), Expect = 3e-07
Identities = 26/123 (21%), Positives = 47/123 (38%), Gaps = 33/123 (26%)
Query: 47 SLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWG 106
+LSGGQR R+++ R + V+LLD+PLS +DA + + +
Sbjct: 130 ALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKR---------- 179
Query: 107 RSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHV-DHVMLLEKGSVEAFGTTTQ 165
+T++ +TH + D +++L+ G V G +
Sbjct: 180 ----------------------LGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLE 217
Query: 166 LLA 168
L
Sbjct: 218 LYH 220
>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12
uptake, BtuD {Escherichia coli [TaxId: 562]}
Length = 231
Score = 46.5 bits (110), Expect = 5e-07
Identities = 24/139 (17%), Positives = 48/139 (34%), Gaps = 41/139 (29%)
Query: 39 TLVGDKGVSLSGGQRARISLARAVYKRA-------DVYLLDDPLSAVDAHVGKHLFEDCI 91
+G LSGG+ R+ LA V + + LLD+P++++D L +
Sbjct: 117 DKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDK--- 173
Query: 92 TGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQY-LTHVDHVM 150
++ + +++ +H + + L H
Sbjct: 174 ------------------------------ILSALCQQGLAIVMSSHDLNHTLRHAHRAW 203
Query: 151 LLEKGSVEAFGTTTQLLAS 169
LL+ G + A G ++L
Sbjct: 204 LLKGGKMLASGRREEVLTP 222
>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga
maritima [TaxId: 2336]}
Length = 238
Score = 46.1 bits (109), Expect = 6e-07
Identities = 19/127 (14%), Positives = 46/127 (36%), Gaps = 34/127 (26%)
Query: 43 DKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFD 102
D+ + S G ++ +ARA+ + +LD+P S +D + + + +
Sbjct: 129 DRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRK-ILKQASQ------ 181
Query: 103 SRWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHV-DHVMLLEKGSVEAFG 161
+ T+++ +H + + + D + L+ G++ G
Sbjct: 182 --------------------------EGLTILVSSHNMLEVEFLCDRIALIHNGTIVETG 215
Query: 162 TTTQLLA 168
T +L
Sbjct: 216 TVEELKE 222
>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding
protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId:
2234]}
Length = 240
Score = 43.8 bits (103), Expect = 4e-06
Identities = 34/167 (20%), Positives = 56/167 (33%), Gaps = 38/167 (22%)
Query: 10 PGHPDPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQRARISLARAVYKRADVY 69
R +V + E DR K LSGG+R R++LARA+ + +
Sbjct: 94 GLRNVERVERDRRVREMAEKLGIAHLLDR-----KPARLSGGERQRVALARALVIQPRLL 148
Query: 70 LLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSALGVRGALSLVRTSFLK 129
LLD+PLSAVD L E+
Sbjct: 149 LLDEPLSAVDLKTKGVLMEELR--------------------------------FVQREF 176
Query: 130 EKTVMLITHQIQYLTHV-DHVMLLEKGSVEAFGTTTQLLASGLDFTQ 175
+ ++ +TH + + D V ++ G + G +L ++
Sbjct: 177 DVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAKNGEVA 223
>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter,
ATP-binding protein {Methanosarcina acetivorans [TaxId:
2214]}
Length = 229
Score = 42.7 bits (100), Expect = 1e-05
Identities = 26/122 (21%), Positives = 45/122 (36%), Gaps = 33/122 (27%)
Query: 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGR 107
LSGG++ R++LARA+ + LLD+PLSA+D ++ E
Sbjct: 128 LSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLS---------------- 171
Query: 108 SFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHV-DHVMLLEKGSVEAFGTTTQL 166
+ TV+ ITH + D + ++ G + G ++
Sbjct: 172 ----------------VLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEI 215
Query: 167 LA 168
Sbjct: 216 FE 217
>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus
furiosus [TaxId: 2261]}
Length = 200
Score = 39.1 bits (91), Expect = 1e-04
Identities = 15/46 (32%), Positives = 24/46 (52%)
Query: 43 DKGVSLSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFE 88
K LS G R+ LA + A++Y+LDDP+ A+D + +
Sbjct: 121 KKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLK 166
>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV,
N-terminal domain {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 242
Score = 39.3 bits (91), Expect = 1e-04
Identities = 26/122 (21%), Positives = 43/122 (35%), Gaps = 33/122 (27%)
Query: 48 LSGGQRARISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGR 107
LSG Q+ R++LARA+ K + LLD+P S +DA +
Sbjct: 141 LSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVK---------------- 184
Query: 108 SFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHV-DHVMLLEKGSVEAFGTTTQL 166
T+++++H + + D V +L KG + G L
Sbjct: 185 ----------------EVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDL 228
Query: 167 LA 168
Sbjct: 229 YD 230
>g1ii8.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 369
Score = 38.3 bits (87), Expect = 4e-04
Identities = 15/111 (13%), Positives = 35/111 (31%), Gaps = 39/111 (35%)
Query: 50 GGQRARIS------LARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDS 103
GG+R + ++ + + +LD+P +D + L
Sbjct: 281 GGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKL----------------- 323
Query: 104 RWGRSFFGSALGVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEK 154
++++ K V+L++H + DHV+ +
Sbjct: 324 ----------------ITIMERYLKKIPQVILVSHDEELKDAADHVIRISL 358
>g1f2t.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 292
Score = 34.0 bits (76), Expect = 0.008
Identities = 13/101 (12%), Positives = 31/101 (30%), Gaps = 33/101 (32%)
Query: 55 RISLARAVYKRADVYLLDDPLSAVDAHVGKHLFEDCITGLHTGVPRFDSRWGRSFFGSAL 114
R++++ + + +LD+P +D + L
Sbjct: 215 RLAMSLYLAGEISLLILDEPTPYLDEERRRKLIT-------------------------- 248
Query: 115 GVRGALSLVRTSFLKEKTVMLITHQIQYLTHVDHVMLLEKG 155
++ K V+L++H + DHV+ +
Sbjct: 249 -------IMERYLKKIPQVILVSHDEELKDAADHVIRISLE 282
>d1wy5a1 c.26.2.5 (A:1-216) TilS-like protein Aq_1887 {Aquifex
aeolicus [TaxId: 63363]}
Length = 216
Score = 29.6 bits (65), Expect = 0.23
Identities = 13/39 (33%), Positives = 17/39 (43%), Gaps = 5/39 (12%)
Query: 14 DPNSRRVVKVCALKEDFAQLPSGDRTLVGDKGVSLSGGQ 52
+P SR + KV AL+ D R L+ SGG
Sbjct: 2 NPESRVIRKVLALQNDEKIFSGERRVLIA-----FSGGV 35
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.136 0.396
Gapped
Lambda K H
0.267 0.0367 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 746,398
Number of extensions: 32277
Number of successful extensions: 127
Number of sequences better than 10.0: 1
Number of HSP's gapped: 127
Number of HSP's successfully gapped: 41
Length of query: 209
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 128
Effective length of database: 1,295,466
Effective search space: 165819648
Effective search space used: 165819648
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.4 bits)