Query psy12536
Match_columns 205
No_of_seqs 157 out of 1695
Neff 11.2
Searched_HMMs 46136
Date Fri Aug 16 21:49:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12536.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12536hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0058|consensus 100.0 6E-32 1.3E-36 210.6 24.6 199 7-205 189-496 (716)
2 COG2274 SunT ABC-type bacterio 100.0 2.3E-26 5.1E-31 184.5 26.2 200 4-205 192-501 (709)
3 KOG0055|consensus 100.0 7.6E-26 1.6E-30 186.0 25.8 199 7-205 708-1018(1228)
4 KOG0054|consensus 99.9 5.6E-25 1.2E-29 184.3 25.3 203 3-205 239-549 (1381)
5 TIGR00958 3a01208 Conjugate Tr 99.9 1.1E-24 2.4E-29 178.0 26.6 196 10-205 205-509 (711)
6 TIGR02868 CydC thiol reductant 99.9 2.1E-24 4.6E-29 171.7 25.7 144 14-157 61-233 (529)
7 PRK11160 cysteine/glutathione 99.9 5.8E-24 1.3E-28 170.3 26.2 142 11-152 65-235 (574)
8 TIGR03797 NHPM_micro_ABC2 NHPM 99.9 5.4E-24 1.2E-28 173.8 26.2 198 6-205 176-481 (686)
9 TIGR02857 CydD thiol reductant 99.9 8.2E-24 1.8E-28 168.3 26.4 145 7-151 45-217 (529)
10 TIGR03375 type_I_sec_LssB type 99.9 9.5E-24 2.1E-28 172.6 26.8 196 7-205 188-493 (694)
11 TIGR01193 bacteriocin_ABC ABC- 99.9 1.1E-23 2.4E-28 172.6 26.1 149 6-155 196-372 (708)
12 TIGR01846 type_I_sec_HlyB type 99.9 2.3E-23 5E-28 170.3 26.5 198 6-205 179-485 (694)
13 PRK11174 cysteine/glutathione 99.9 4.8E-23 1E-27 165.9 26.0 142 7-148 64-233 (588)
14 PLN03232 ABC transporter C fam 99.9 5E-23 1.1E-27 178.7 27.5 198 8-205 343-645 (1495)
15 TIGR03796 NHPM_micro_ABC1 NHPM 99.9 4.9E-23 1.1E-27 168.9 25.9 150 6-156 194-371 (710)
16 KOG0055|consensus 99.9 1.2E-23 2.6E-28 173.2 22.0 198 8-205 73-381 (1228)
17 PRK10789 putative multidrug tr 99.9 1.4E-22 3.1E-27 162.2 26.4 145 8-152 38-211 (569)
18 PLN03130 ABC transporter C fam 99.9 1.1E-22 2.3E-27 177.1 27.5 189 17-205 352-645 (1622)
19 PRK11176 lipid transporter ATP 99.9 1.5E-22 3.3E-27 162.8 26.5 193 12-205 71-371 (582)
20 PTZ00265 multidrug resistance 99.9 1.4E-22 3.1E-27 174.8 26.9 149 8-156 868-1061(1466)
21 TIGR02203 MsbA_lipidA lipid A 99.9 2.4E-22 5.3E-27 161.4 26.6 197 8-205 56-360 (571)
22 TIGR00957 MRP_assoc_pro multi 99.9 3.9E-22 8.4E-27 173.5 26.6 144 10-153 1009-1180(1522)
23 TIGR00957 MRP_assoc_pro multi 99.9 7.3E-22 1.6E-26 171.8 27.5 156 6-161 358-540 (1522)
24 TIGR02204 MsbA_rel ABC transpo 99.9 1.1E-21 2.5E-26 157.7 26.4 143 9-151 61-231 (576)
25 PTZ00265 multidrug resistance 99.9 8.9E-22 1.9E-26 170.0 26.5 144 8-151 99-270 (1466)
26 TIGR01192 chvA glucan exporter 99.9 2E-21 4.3E-26 156.0 26.6 136 15-150 65-228 (585)
27 PLN03130 ABC transporter C fam 99.9 9E-22 1.9E-26 171.4 26.0 145 8-152 955-1127(1622)
28 COG4987 CydC ABC-type transpor 99.9 2.1E-21 4.6E-26 147.4 24.0 194 11-205 63-366 (573)
29 PRK10790 putative multidrug tr 99.9 3.9E-21 8.4E-26 154.9 26.7 141 12-152 71-239 (592)
30 COG1132 MdlB ABC-type multidru 99.9 3.9E-21 8.3E-26 154.2 26.6 196 8-205 54-357 (567)
31 PLN03232 ABC transporter C fam 99.9 3E-21 6.6E-26 167.7 25.7 146 7-152 951-1124(1495)
32 TIGR01271 CFTR_protein cystic 99.9 5.5E-21 1.2E-25 166.0 26.6 156 5-160 121-303 (1490)
33 PRK13657 cyclic beta-1,2-gluca 99.9 1.1E-20 2.5E-25 152.1 26.7 139 15-153 65-231 (588)
34 TIGR01194 cyc_pep_trnsptr cycl 99.9 1.2E-20 2.6E-25 150.7 25.3 133 14-146 61-222 (555)
35 TIGR01842 type_I_sec_PrtD type 99.9 1.8E-20 3.9E-25 149.6 25.6 144 7-155 47-218 (544)
36 KOG0057|consensus 99.9 1.5E-20 3.3E-25 143.1 22.7 198 6-205 74-380 (591)
37 COG4988 CydD ABC-type transpor 99.9 7.5E-20 1.6E-24 140.7 25.4 199 5-205 39-349 (559)
38 PTZ00243 ABC transporter; Prov 99.9 3.8E-20 8.1E-25 161.1 26.0 124 25-148 1017-1168(1560)
39 PRK10522 multidrug transporter 99.9 1.5E-19 3.3E-24 144.3 25.2 112 20-131 62-200 (547)
40 KOG0054|consensus 99.9 2.5E-20 5.3E-25 156.8 21.2 148 6-153 858-1033(1381)
41 TIGR01271 CFTR_protein cystic 99.9 2.7E-19 5.9E-24 155.6 26.5 132 17-148 936-1095(1490)
42 PTZ00243 ABC transporter; Prov 99.9 8E-19 1.7E-23 153.0 25.2 163 6-168 285-476 (1560)
43 PF00664 ABC_membrane: ABC tra 99.8 7.2E-18 1.6E-22 123.1 22.9 160 8-167 43-230 (275)
44 TIGR00954 3a01203 Peroxysomal 99.8 9.5E-18 2.1E-22 136.2 22.0 141 8-149 141-310 (659)
45 KOG0056|consensus 99.8 3E-18 6.6E-23 129.5 10.1 183 20-205 273-566 (790)
46 COG5265 ATM1 ABC-type transpor 99.6 4.9E-15 1.1E-19 110.2 12.4 176 28-205 4-291 (497)
47 COG4618 ArpD ABC-type protease 99.6 2.1E-12 4.6E-17 98.5 20.5 197 3-204 60-363 (580)
48 COG4615 PvdE ABC-type sideroph 99.5 2.8E-12 6E-17 95.3 16.1 113 23-135 65-204 (546)
49 COG4178 ABC-type uncharacteriz 98.6 3.4E-05 7.3E-10 61.8 21.0 142 7-148 87-276 (604)
50 KOG0060|consensus 98.4 6.5E-05 1.4E-09 59.4 17.6 125 13-138 129-286 (659)
51 PF06472 ABC_membrane_2: ABC t 98.2 0.0014 3E-08 48.6 21.7 142 7-149 67-241 (281)
52 PRK14257 phosphate ABC transpo 97.4 0.00014 3.1E-09 55.0 3.1 31 174-205 80-110 (329)
53 PRK13536 nodulation factor exp 96.5 0.0021 4.6E-08 48.9 2.5 29 174-205 41-69 (340)
54 PRK14275 phosphate ABC transpo 96.4 0.0022 4.7E-08 47.7 2.4 29 174-205 39-67 (286)
55 PRK14254 phosphate ABC transpo 96.4 0.0024 5.1E-08 47.5 2.6 29 174-205 39-67 (285)
56 TIGR00767 rho transcription te 96.4 0.0028 6E-08 48.9 2.6 30 174-205 130-170 (415)
57 KOG0064|consensus 96.3 0.43 9.4E-06 38.5 20.0 122 26-148 177-334 (728)
58 PRK14264 phosphate ABC transpo 96.2 0.0042 9E-08 46.7 2.7 29 174-205 45-73 (305)
59 PRK13549 xylose transporter AT 95.9 0.0054 1.2E-07 49.4 2.3 32 174-205 259-290 (506)
60 PLN03073 ABC transporter F fam 95.6 0.011 2.3E-07 49.7 3.0 30 174-205 508-537 (718)
61 TIGR03269 met_CoM_red_A2 methy 95.6 0.01 2.2E-07 48.1 2.8 32 174-205 279-312 (520)
62 PLN03073 ABC transporter F fam 95.5 0.011 2.4E-07 49.6 2.8 29 174-205 177-205 (718)
63 PRK15064 ABC transporter ATP-b 95.5 0.013 2.8E-07 47.6 3.0 29 174-205 319-347 (530)
64 PRK10938 putative molybdenum t 95.4 0.012 2.7E-07 47.2 2.5 29 174-205 260-288 (490)
65 TIGR02633 xylG D-xylose ABC tr 95.1 0.014 3.1E-07 47.0 2.2 32 174-205 257-288 (500)
66 TIGR03719 ABC_ABC_ChvD ATP-bin 95.0 0.02 4.4E-07 46.7 2.8 29 174-205 322-350 (552)
67 PRK15134 microcin C ABC transp 95.0 0.014 3.1E-07 47.3 1.9 32 174-205 275-314 (529)
68 COG0488 Uup ATPase components 95.0 0.34 7.4E-06 39.4 9.5 30 174-205 321-350 (530)
69 PRK11819 putative ABC transpor 94.9 0.021 4.5E-07 46.7 2.7 29 174-205 324-352 (556)
70 PRK10636 putative ABC transpor 94.9 0.022 4.7E-07 47.4 2.7 29 174-205 312-340 (638)
71 PRK11147 ABC transporter ATPas 94.8 0.023 5.1E-07 47.2 2.7 29 174-205 319-347 (635)
72 PRK10261 glutathione transport 94.7 0.029 6.2E-07 46.6 2.9 32 174-205 313-352 (623)
73 cd03291 ABCC_CFTR1 The CFTR su 93.7 0.066 1.4E-06 39.8 2.8 27 174-205 39-65 (282)
74 TIGR00956 3a01205 Pleiotropic 93.1 0.072 1.6E-06 48.3 2.7 32 174-205 759-791 (1394)
75 TIGR01257 rim_protein retinal- 92.9 0.092 2E-06 49.3 3.1 31 174-205 1937-1967(2272)
76 TIGR01257 rim_protein retinal- 92.1 0.14 3.1E-06 48.2 3.1 31 174-205 928-958 (2272)
77 COG1123 ATPase components of v 91.7 0.16 3.5E-06 41.0 2.7 31 175-205 281-319 (539)
78 KOG0927|consensus 90.7 1 2.2E-05 36.5 6.1 30 174-205 389-418 (614)
79 PRK10982 galactose/methyl gala 89.9 0.2 4.4E-06 40.4 1.9 27 174-205 250-276 (491)
80 PRK09700 D-allose transporter 89.4 0.24 5.1E-06 40.2 1.9 27 174-205 265-291 (510)
81 PRK12369 putative transporter; 86.3 13 0.00028 28.5 19.0 66 8-79 65-130 (326)
82 PLN03140 ABC transporter G fam 85.9 0.69 1.5E-05 42.5 2.9 32 174-205 867-908 (1470)
83 PLN03211 ABC transporter G-25; 85.3 0.34 7.3E-06 40.7 0.6 26 177-205 71-96 (659)
84 PRK13409 putative ATPase RIL; 83.8 0.76 1.6E-05 38.1 2.1 28 174-205 340-367 (590)
85 KOG0927|consensus 76.9 1.9 4.1E-05 35.0 2.0 29 174-205 75-103 (614)
86 COG3845 ABC-type uncharacteriz 75.8 3 6.4E-05 33.4 2.8 30 174-205 257-286 (501)
87 PF02767 DNA_pol3_beta_2: DNA 73.6 0.52 1.1E-05 29.9 -1.5 27 178-204 12-38 (116)
88 KOG0066|consensus 73.6 1.5 3.2E-05 34.8 0.7 26 174-201 586-611 (807)
89 PRK11288 araG L-arabinose tran 72.5 2.5 5.4E-05 34.3 1.8 25 174-205 257-281 (501)
90 PRK11098 microcin B17 transpor 72.3 48 0.001 26.4 20.6 63 9-78 141-203 (409)
91 PRK10762 D-ribose transporter 70.1 3.1 6.8E-05 33.8 1.9 24 174-205 257-280 (501)
92 COG2401 ABC-type ATPase fused 60.2 4 8.6E-05 32.3 0.7 17 189-205 395-411 (593)
93 KOG0059|consensus 57.6 8.7 0.00019 33.8 2.4 29 174-204 564-592 (885)
94 PRK15439 autoinducer 2 ABC tra 57.5 8.2 0.00018 31.5 2.1 24 174-205 268-291 (510)
95 PRK13409 putative ATPase RIL; 57.4 5.4 0.00012 33.2 1.1 25 178-205 77-101 (590)
96 PF10980 DUF2787: Protein of u 54.0 8.7 0.00019 24.9 1.4 31 174-204 44-85 (128)
97 COG4172 ABC-type uncharacteriz 48.0 18 0.0004 28.7 2.5 32 174-205 276-315 (534)
98 PF13092 CENP-L: Kinetochore c 36.3 22 0.00048 24.1 1.3 26 179-204 67-92 (162)
99 KOG0062|consensus 35.8 21 0.00045 29.2 1.3 28 174-202 362-389 (582)
100 PRK14946 DNA polymerase III su 34.9 26 0.00055 27.4 1.6 28 177-204 139-166 (366)
101 TIGR00630 uvra excinuclease AB 34.0 33 0.00072 30.5 2.3 24 174-205 612-635 (924)
102 PRK14944 DNA polymerase III su 32.8 25 0.00055 27.5 1.3 27 178-204 143-169 (375)
103 TIGR00956 3a01205 Pleiotropic 32.7 20 0.00043 33.4 0.8 17 189-205 73-89 (1394)
104 PF00664 ABC_membrane: ABC tra 32.7 1.8E+02 0.0039 20.5 20.1 158 12-170 51-237 (275)
105 PF11446 DUF2897: Protein of u 32.7 86 0.0019 17.0 2.9 12 2-13 2-13 (55)
106 PRK06673 DNA polymerase III su 32.5 28 0.0006 27.3 1.5 28 177-204 145-172 (376)
107 PLN03140 ABC transporter G fam 30.3 24 0.00052 33.1 0.9 17 189-205 177-193 (1470)
108 PRK14940 DNA polymerase III su 28.5 34 0.00074 26.7 1.4 27 178-204 140-166 (367)
109 PRK14942 DNA polymerase III su 28.0 32 0.00069 26.9 1.1 28 177-204 146-173 (373)
110 COG1129 MglA ABC-type sugar tr 27.2 49 0.0011 27.1 2.0 25 174-205 263-287 (500)
111 PRK05643 DNA polymerase III su 25.8 42 0.00091 26.0 1.4 27 178-204 141-167 (367)
112 PRK00349 uvrA excinuclease ABC 25.1 48 0.001 29.6 1.8 24 174-205 614-637 (943)
113 PF04648 MF_alpha: Yeast matin 24.7 45 0.00097 12.1 0.7 6 199-204 5-10 (13)
114 smart00480 POL3Bc DNA polymera 24.2 47 0.001 25.5 1.5 27 178-204 123-149 (345)
115 KOG3491|consensus 23.7 1.4E+02 0.003 16.3 2.9 21 6-26 39-59 (65)
116 PRK14941 DNA polymerase III su 22.0 48 0.001 25.9 1.1 27 178-204 143-169 (374)
117 KOG4701|consensus 21.6 52 0.0011 25.8 1.2 21 183-204 142-162 (568)
118 COG1119 ModF ABC-type molybden 20.8 62 0.0013 23.8 1.4 12 175-186 32-43 (257)
119 TIGR03774 RPE2 Rickettsial pal 20.4 56 0.0012 15.5 0.7 17 177-193 2-18 (35)
No 1
>KOG0058|consensus
Probab=100.00 E-value=6e-32 Score=210.58 Aligned_cols=199 Identities=13% Similarity=0.177 Sum_probs=167.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCccccCCCChhhHHHHHHhhHHHHHHHHHHHhHH
Q psy12536 7 TACWALVALIVVDLLIDHQYDLAVQALGMELRVAGCSLIYRKALRLSKTALGDTTVGQVVNLLSNDVNRFDTACIFLHHL 86 (205)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~g~i~~~~~~d~~~l~~~~~~~~~~ 86 (205)
-.+.++.+++++.+++.....++....+.++..++|.++|+++++++.+|||++++||++||++.|++.+.+.+......
T Consensus 189 ~~~~~l~~l~~~~a~~~~~r~~~~~~a~~rv~~rlR~~lF~sil~QdiaFFD~nktGeL~SRLtsD~~~vs~svs~nls~ 268 (716)
T KOG0058|consen 189 RACTILLGLFLIGALANAIRGGLLQYAGERVVARLRTDLFRSLLRQDIAFFDENKTGELISRLTSDTQIVSNSVSQNLSD 268 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCccHHHhhhhhhHHHHHHHHHHHHHH
Confidence 35567778888999999999999999999999999999999999999999999999999999999999988776533221
Q ss_pred ---------------------HHH-------HHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHhhhHHH
Q psy12536 87 ---------------------INR-------LLGAKKMYLGKKTSELRLKTALRTDERVRLMNEIISGIQVIKMYAWERS 138 (205)
Q Consensus 87 ---------------------~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~ 138 (205)
+.. +++++..++++..++..++.+++.++.++...|.++++||||+|+.|+.
T Consensus 269 ~lR~~~~~~g~~~~M~~~S~~Ltlv~~i~~P~v~~~~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~ 348 (716)
T KOG0058|consen 269 GLRNLVQGFGGLGFMFSLSWRLTLVTLIVVPIVALVAKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQ 348 (716)
T ss_pred HHHHHHHHHHhHHHHhhhhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHH
Confidence 000 1111188899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---------------------------------------------
Q psy12536 139 FASMVRNARKKEIQQIRGSTYIKGVLLSFIIFHTR--------------------------------------------- 173 (205)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------------- 173 (205)
..+++.+..+...+..++.....+...+...+...
T Consensus 349 E~~ry~~~l~~~~~i~~k~a~a~~~f~~~~~~~~~~~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~y 428 (716)
T KOG0058|consen 349 EVKRYNKKLREVLKLSKKEAVAYGIFFGSTNLLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFY 428 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHhHhHHHHHHhHHHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888887777777666666655555544333322
Q ss_pred ------------------------------------eEEEEeceEEecCCCCCCccccceeeecCCCC
Q psy12536 174 ------------------------------------SIFIKNIKAKWLPDQPDYTLNDITLDVKNAES 205 (205)
Q Consensus 174 ------------------------------------~I~~~~vsF~Y~~~~~~~vL~~i~l~i~~G~~ 205 (205)
.|+|+||+|+||++|+.|||+|+||+|+|||+
T Consensus 429 s~lmkgvGAs~rvFel~dr~P~i~~~G~~~p~~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~ 496 (716)
T KOG0058|consen 429 SELMKGVGASERVFELMDRKPRIPLTGTLAPDHLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEV 496 (716)
T ss_pred HHHHHhcchHHHHHHHhccCCCCCCCCccccccccceEEEEEeeeecCCCCCchhhcCceeeeCCCCE
Confidence 79999999999999999999999999999984
No 2
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.96 E-value=2.3e-26 Score=184.53 Aligned_cols=200 Identities=18% Similarity=0.215 Sum_probs=166.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCccccCCCChhhHHHHHHhhHHHHHHHHHHH
Q psy12536 4 TAPTACWALVALIVVDLLIDHQYDLAVQALGMELRVAGCSLIYRKALRLSKTALGDTTVGQVVNLLSNDVNRFDTACIFL 83 (205)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~g~i~~~~~~d~~~l~~~~~~~ 83 (205)
+++++.+++++..++..++..+..++..+++.++...+..++|+|++++|+.||+++++||+++|+. |.+++++++...
T Consensus 192 tL~vl~ig~~~~~l~~~~l~~lr~~~~~~~~~rld~~l~~~~~~hll~Lpl~~f~~r~~Ge~~sR~~-el~~Ir~flt~~ 270 (709)
T COG2274 192 TLTVLAIGLLLAALFEALLRLLRTYLIAHLGKRLDLELSGRFFRHLLRLPLSYFEKRSVGEIISRVR-ELEQIREFLTGS 270 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCcHHHccCCChhhHHHHHH-HHHHHHHHHHHH
Confidence 4567788888888999999999999999999999999999999999999999999999999999998 888888887532
Q ss_pred hH-H----------------------HHHHHHH-----HHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHhhh
Q psy12536 84 HH-L----------------------INRLLGA-----KKMYLGKKTSELRLKTALRTDERVRLMNEIISGIQVIKMYAW 135 (205)
Q Consensus 84 ~~-~----------------------~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~ 135 (205)
.. . +++++.+ +..++.+..++..++..+..++.++.+.|.+.|+++||+.+.
T Consensus 271 ~l~~iiD~~~~~i~l~vm~~ys~~L~li~l~~~~l~~l~~~~~~~~l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~ 350 (709)
T COG2274 271 ILTLIIDLLFALIFLAVMFLYSWKLTLIVLAAIPLNVLITLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAA 350 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhh
Confidence 11 1 1111111 178889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc------------------------------------------
Q psy12536 136 ERSFASMVRNARKKEIQQIRGSTYIKGVLLSFIIFHTR------------------------------------------ 173 (205)
Q Consensus 136 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------ 173 (205)
|+.+..+|++...+..+...+.............++..
T Consensus 351 e~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~v~iL~~G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~ 430 (709)
T COG2274 351 EPRFRSQWDNRLAKQVNIGFKTEKLALILNTIKSLLQQLSSVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLS 430 (709)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhHHHHHH
Confidence 99999999888887777666655555444443333322
Q ss_pred ----------------------------------------eEEEEeceEEecCCCCCCccccceeeecCCCC
Q psy12536 174 ----------------------------------------SIFIKNIKAKWLPDQPDYTLNDITLDVKNAES 205 (205)
Q Consensus 174 ----------------------------------------~I~~~~vsF~Y~~~~~~~vL~~i~l~i~~G~~ 205 (205)
+|+|+||+|+|+++ ++++|+|+||+|||||+
T Consensus 431 ~~~~~~q~~~~~~~rL~dil~~~~E~~~~~~~~~~~~~~g~I~~~nvsf~y~~~-~~~vL~~isL~I~~Ge~ 501 (709)
T COG2274 431 QLWTDFQQAKVALERLGDILDTPPEQEGDKTLIHLPKLQGEIEFENVSFRYGPD-DPPVLEDLSLEIPPGEK 501 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcccccccccccccccCceEEEEEEEEEeCCC-CcchhhceeEEeCCCCE
Confidence 69999999999987 56899999999999985
No 3
>KOG0055|consensus
Probab=99.95 E-value=7.6e-26 Score=185.98 Aligned_cols=199 Identities=16% Similarity=0.146 Sum_probs=167.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCccccCCC-ChhhHHHHHHhhHHHHHHHHHHHhH
Q psy12536 7 TACWALVALIVVDLLIDHQYDLAVQALGMELRVAGCSLIYRKALRLSKTALGDT-TVGQVVNLLSNDVNRFDTACIFLHH 85 (205)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~-~~g~i~~~~~~d~~~l~~~~~~~~~ 85 (205)
.|++.++++.+...++.+++.++....+.++..++|.++|+++++++.+|||+. ++|.+.+|+.+|+..++..+.....
T Consensus 708 ~~al~f~~l~~~~~i~~~~q~~~f~~~ge~Lt~R~R~~~F~~ll~qd~~wFD~~~nsg~l~~RLa~Da~~vr~~v~~rl~ 787 (1228)
T KOG0055|consen 708 AWALIFLGLGIVSGITNFLQHYFFGIAGEKLTKRLRSMMFRALLRQEVGWFDDPENSGALSSRLATDASNVRAAVGDRLS 787 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccchHHHHHHhcchHHHHHHHHHHHH
Confidence 367777788888999999999999999999999999999999999999999863 3399999999999999887754222
Q ss_pred H-------------------HH--H-------HHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHhhhHH
Q psy12536 86 L-------------------IN--R-------LLGAKKMYLGKKTSELRLKTALRTDERVRLMNEIISGIQVIKMYAWER 137 (205)
Q Consensus 86 ~-------------------~~--~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~ 137 (205)
. |- . ++.+..+...+.+.....+..+..++......|.+.+||||++|+.|+
T Consensus 788 ~vv~~~~~~~~~iiiaf~~~W~lalv~la~~Pll~~~~~~~~~~~~~~~~~~~~~~~ea~~iA~eai~NIrTV~al~~e~ 867 (1228)
T KOG0055|consen 788 LVVQNIAAVIIGIIIAFIYGWRLALVVLATFPLLILSGYLQKKFLKGFSKDDKKAYEEASKIAIEAVSNIRTVAALCAEE 867 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHH
Confidence 1 00 0 000116666777778888888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--------------------------------------------
Q psy12536 138 SFASMVRNARKKEIQQIRGSTYIKGVLLSFIIFHTR-------------------------------------------- 173 (205)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------------- 173 (205)
++.+.+.+..+.-.+...+++.+.++..++++.+..
T Consensus 868 ~~~~~y~~~l~~p~~~~~~~~~i~gl~f~~sqs~~~~~~A~~f~~G~~Li~~g~~~~~~~~~vf~~l~~ta~~~~~~~s~ 947 (1228)
T KOG0055|consen 868 KFMELYKEELEKPRKSSFKRGLISGLGFGFSQSLLFFVYALSFWYGARLISNGEMTFEDVFRVFMALSFTAMALGQASSY 947 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999888888888888877777777776666555
Q ss_pred ---------------------------------------eEEEEeceEEecCCCCCCccccceeeecCCCC
Q psy12536 174 ---------------------------------------SIFIKNIKAKWLPDQPDYTLNDITLDVKNAES 205 (205)
Q Consensus 174 ---------------------------------------~I~~~~vsF~Y~~~~~~~vL~~i~l~i~~G~~ 205 (205)
+|+|+||+|+||++|+.+||+|+||+|++||+
T Consensus 948 ~Pd~~ka~~Aa~~iF~i~dr~~~i~~~~~~~~~~~~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqT 1018 (1228)
T KOG0055|consen 948 APDISKAKIAAGSIFEILDRKPTIDPDSTSGGKLPNVKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQT 1018 (1228)
T ss_pred CcHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccceeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCE
Confidence 89999999999999999999999999999985
No 4
>KOG0054|consensus
Probab=99.95 E-value=5.6e-25 Score=184.27 Aligned_cols=203 Identities=39% Similarity=0.600 Sum_probs=180.9
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCccccCCCChhhHHHHHHhhHHHHHHHHHH
Q psy12536 3 LTAPTACWALVALIVVDLLIDHQYDLAVQALGMELRVAGCSLIYRKALRLSKTALGDTTVGQVVNLLSNDVNRFDTACIF 82 (205)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~g~i~~~~~~d~~~l~~~~~~ 82 (205)
..+..+++++++..++..++...+.+...+.+.+++..+...+|+|.++++-..-.+..+|+++|.++.|++++.++...
T Consensus 239 ~~g~~~a~~lf~~~~l~~l~~~~~~~~~~~~g~r~R~al~~~IY~K~L~ls~~~~~~~t~G~ivNlms~D~~ri~~~~~~ 318 (1381)
T KOG0054|consen 239 NNGYLLAVLLFLASLLQSLLLHQYFFVSFRVGMRLRSALISAIYRKALRLSNSARGETTVGEIVNLMSVDAQRLSDAACF 318 (1381)
T ss_pred chhHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHHHHHHHhhhcCchhhccCCCcchhhhhhhhhHHHHHHHHHH
Confidence 34577888888999999999999999999999999999999999999999998888999999999999999999999876
Q ss_pred HhHH-------------------HHHHHHHH--------HHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHhhh
Q psy12536 83 LHHL-------------------INRLLGAK--------KMYLGKKTSELRLKTALRTDERVRLMNEIISGIQVIKMYAW 135 (205)
Q Consensus 83 ~~~~-------------------~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~ 135 (205)
++.+ +++++|++ ..++.++++++..+.++..|++.+.++|.++||++||.|+|
T Consensus 319 ~h~~w~~Plqi~~~l~lLy~~LG~sa~~G~~~~il~~p~n~~~a~~~~~~q~~~m~~~D~Rik~~nEiL~~IkviK~yaW 398 (1381)
T KOG0054|consen 319 LHLLWSAPLQIILALYLLYGLLGPSALAGVAVMVLLIPLNSFLAKKIAKFQKRLMKRKDERIKLMNEILNGIKVIKLYAW 398 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhHhhhhHhh
Confidence 6655 22222222 88899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc------------------------------------------
Q psy12536 136 ERSFASMVRNARKKEIQQIRGSTYIKGVLLSFIIFHTR------------------------------------------ 173 (205)
Q Consensus 136 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------ 173 (205)
|+.|.+++++.|++|.+..++.....++........+.
T Consensus 399 E~~F~~~I~~~R~~El~~lrk~~~~~~~~~~~~~~~p~lv~~~tF~~~v~~~~~~lt~~~aF~slalfniLr~pl~~~P~ 478 (1381)
T KOG0054|consen 399 EKPFLKKIEDLRQKELKLLRKSAYLSALNSFLNFFSPVLVSVVTFVVFVLLLGNLLTASTAFTSLALFNILRFPLFMLPS 478 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccHhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998888877766555
Q ss_pred ---------------------------------------eEEEEeceEEecCCCCCCccccceeeecCCCC
Q psy12536 174 ---------------------------------------SIFIKNIKAKWLPDQPDYTLNDITLDVKNAES 205 (205)
Q Consensus 174 ---------------------------------------~I~~~~vsF~Y~~~~~~~vL~~i~l~i~~G~~ 205 (205)
.|+++|.+|+|++...+|.|+||||+||+||.
T Consensus 479 ~i~~~vqa~VS~~Ri~~fl~~~e~~~~~~~~~~~~~~~~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~l 549 (1381)
T KOG0054|consen 479 VISQLVQAKVSLKRLKEFLLSEELDPDSVERSPDEAGENAIEIKNGSFSWDSESPEPTLKDINFEIKKGQL 549 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcccCccccccCCCCCCCceEEEeeeeEecCCCCCcccccceeEEecCCCE
Confidence 79999999999874356699999999999983
No 5
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.95 E-value=1.1e-24 Score=178.00 Aligned_cols=196 Identities=14% Similarity=0.140 Sum_probs=146.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCccccCCCChhhHHHHHHhhHHHHHHHHHHHhH-H--
Q psy12536 10 WALVALIVVDLLIDHQYDLAVQALGMELRVAGCSLIYRKALRLSKTALGDTTVGQVVNLLSNDVNRFDTACIFLHH-L-- 86 (205)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~g~i~~~~~~d~~~l~~~~~~~~~-~-- 86 (205)
..++++.++..++..+..+.....+.++..++|.++|++++++|+.+|++.++|++++++++|++.+.+.+..... +
T Consensus 205 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~~~~G~i~srl~~Di~~i~~~~~~~~~~~l~ 284 (711)
T TIGR00958 205 FFMCLLSIASSVSAGLRGGSFNYTMARINLRIREDLFRSLLRQDLGFFDENKTGELTSRLSSDTQTMSRSLSLNVNVLLR 284 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555667777788888888999999999999999999999999999999999999999999999876542111 1
Q ss_pred --------------------HHHHHH-----HHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHhhhHHHHHH
Q psy12536 87 --------------------INRLLG-----AKKMYLGKKTSELRLKTALRTDERVRLMNEIISGIQVIKMYAWERSFAS 141 (205)
Q Consensus 87 --------------------~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~ 141 (205)
+..++. ++...+.++.++..++..+..++.++.+.|.++|+++||+|+.|+.+.+
T Consensus 285 ~~~~~i~~~~~l~~~s~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~ 364 (711)
T TIGR00958 285 NLVMLLGLLGFMLWLSPRLTMVTLINLPLVFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEAS 364 (711)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHH
Confidence 000000 1166777888888889999999999999999999999999999999777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hcc--------------------------------------------
Q psy12536 142 MVRNARKKEIQQIRGSTYIKGVLLSFIIF----HTR-------------------------------------------- 173 (205)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-------------------------------------------- 173 (205)
++++..++..+...+.............+ ...
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~ 444 (711)
T TIGR00958 365 RFKEALEETLQLNKRKALAYAGYLWTTSVLGMLIQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGM 444 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77766655444433322222211111100 000
Q ss_pred ---------------------------------eEEEEeceEEecCCCCCCccccceeeecCCCC
Q psy12536 174 ---------------------------------SIFIKNIKAKWLPDQPDYTLNDITLDVKNAES 205 (205)
Q Consensus 174 ---------------------------------~I~~~~vsF~Y~~~~~~~vL~~i~l~i~~G~~ 205 (205)
.|+|+||+|+||++|++++|+|+||+|+|||+
T Consensus 445 ~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~ 509 (711)
T TIGR00958 445 MQAVGASEKVFEYLDRKPNIPLTGTLAPLNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEV 509 (711)
T ss_pred HHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCCeEEEEEEEEECCCCCCCccccCceEEEcCCCE
Confidence 49999999999976567899999999999985
No 6
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.94 E-value=2.1e-24 Score=171.70 Aligned_cols=144 Identities=12% Similarity=0.083 Sum_probs=110.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCccccCCCChhhHHHHHHhhHHHHHHHHHHH-hHH------
Q psy12536 14 ALIVVDLLIDHQYDLAVQALGMELRVAGCSLIYRKALRLSKTALGDTTVGQVVNLLSNDVNRFDTACIFL-HHL------ 86 (205)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~g~i~~~~~~d~~~l~~~~~~~-~~~------ 86 (205)
++.++..++.+...++..+.+.++..++|.++|+|++++|+.+|++.++|++++++++|++.+.+.+... ..+
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~ 140 (529)
T TIGR02868 61 AFGIGRAVFRYLERLVGHDAALRSLGRLRVRVYDRLARLALAGRRRFQTGDLLGRLGADVDALQDLYVRVIVPLVVALVV 140 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677888888999999999999999999999999999999999999999999999999998776431 111
Q ss_pred ----------------HHHHHHHH------HHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHhhhHHHHHHHHH
Q psy12536 87 ----------------INRLLGAK------KMYLGKKTSELRLKTALRTDERVRLMNEIISGIQVIKMYAWERSFASMVR 144 (205)
Q Consensus 87 ----------------~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~ 144 (205)
+..+++++ .....+..++..++..+..++..+.+.|.++|+++||+|+.|+.+.++++
T Consensus 141 ~~~~~~~l~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~ 220 (529)
T TIGR02868 141 GSAAVAAIALLSVPAALVLAAGLLLAGFVAPLVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVE 220 (529)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHH
Confidence 00011100 22233334555667778889999999999999999999999999888887
Q ss_pred HHHHHHHHHHHHH
Q psy12536 145 NARKKEIQQIRGS 157 (205)
Q Consensus 145 ~~~~~~~~~~~~~ 157 (205)
+..++..+...+.
T Consensus 221 ~~~~~~~~~~~~~ 233 (529)
T TIGR02868 221 AADRELLAAERRA 233 (529)
T ss_pred HHHHHHHHHHHHH
Confidence 7666555444433
No 7
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.94 E-value=5.8e-24 Score=170.25 Aligned_cols=142 Identities=13% Similarity=0.101 Sum_probs=113.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCccccCCCChhhHHHHHHhhHHHHHHHHHHH-hHH---
Q psy12536 11 ALVALIVVDLLIDHQYDLAVQALGMELRVAGCSLIYRKALRLSKTALGDTTVGQVVNLLSNDVNRFDTACIFL-HHL--- 86 (205)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~g~i~~~~~~d~~~l~~~~~~~-~~~--- 86 (205)
+++++.++..++.+...+...+.+.++..++|.++|+|++++|+.+|++.++|++++++++|++.++.++... ..+
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~ 144 (574)
T PRK11160 65 GVRGAAIGRTAGRYGERLVSHDATFRVLTHLRVFTFSKLLPLSPAGLARYRQGDLLNRLVADVDTLDHLYLRLISPLVAA 144 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445567788899999999999999999999999999999999999999999999999999999998876421 111
Q ss_pred ---------------H-HHH---HHH------HHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHhhhHHHHHH
Q psy12536 87 ---------------I-NRL---LGA------KKMYLGKKTSELRLKTALRTDERVRLMNEIISGIQVIKMYAWERSFAS 141 (205)
Q Consensus 87 ---------------~-~~~---~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~ 141 (205)
| ..+ +++ +...+.++.++..++..+..++.++.+.|.++|+++||+|+.|+.+.+
T Consensus 145 ~~~~~~~~~~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~ 224 (574)
T PRK11160 145 LVVILVLTIGLSFFDLTLALTLGGILLLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQ 224 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHH
Confidence 0 000 000 034556777888888899999999999999999999999999998777
Q ss_pred HHHHHHHHHHH
Q psy12536 142 MVRNARKKEIQ 152 (205)
Q Consensus 142 ~~~~~~~~~~~ 152 (205)
++++..++..+
T Consensus 225 ~~~~~~~~~~~ 235 (574)
T PRK11160 225 QLEQTEQQWLA 235 (574)
T ss_pred HHHHHHHHHHH
Confidence 77666554433
No 8
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.94 E-value=5.4e-24 Score=173.83 Aligned_cols=198 Identities=15% Similarity=0.155 Sum_probs=151.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCccccCCCChhhHHHHHHhhHHHHHHHHHHH-h
Q psy12536 6 PTACWALVALIVVDLLIDHQYDLAVQALGMELRVAGCSLIYRKALRLSKTALGDTTVGQVVNLLSNDVNRFDTACIFL-H 84 (205)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~g~i~~~~~~d~~~l~~~~~~~-~ 84 (205)
+.++++++++.++..++.+...+...+++.++..+++.++|+|++++|+.+|+++++|+++++++ |++.+.+.+... .
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~~~~~~~g~~~~r~~-~~~~i~~~~~~~~~ 254 (686)
T TIGR03797 176 VQIALALLAAAVGAAAFQLAQSLAVLRLETRMDASLQAAVWDRLLRLPVSFFRQYSTGDLASRAM-GISQIRRILSGSTL 254 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHCCCChhHHHHHHh-HHHHHHHHHHHHHH
Confidence 44555666677778899999999999999999999999999999999999999999999999997 788887765421 1
Q ss_pred HH----------------------HHHHHHH-----HHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHhhhHH
Q psy12536 85 HL----------------------INRLLGA-----KKMYLGKKTSELRLKTALRTDERVRLMNEIISGIQVIKMYAWER 137 (205)
Q Consensus 85 ~~----------------------~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~ 137 (205)
.. +.+++++ +...+.++.++..++..+..++..+.+.|.++|+++||+++.|+
T Consensus 255 ~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~ 334 (686)
T TIGR03797 255 TTLLSGIFALLNLGLMFYYSWKLALVAVALALVAIAVTLVLGLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGAEN 334 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccH
Confidence 11 0000000 15667777888888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhcc----------------------------------------
Q psy12536 138 SFASMVRNARKKEIQQIRGSTYIKGVLLSFII----FHTR---------------------------------------- 173 (205)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~---------------------------------------- 173 (205)
.+.+++++..+...+...+..........+.. +...
T Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~ 414 (686)
T TIGR03797 335 RAFARWAKLFSRQRKLELSAQRIENLLTVFNAVLPVLTSAALFAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNT 414 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98888877666555444443333322222111 1111
Q ss_pred ------------------------------------eEEEEeceEEecCCCCCCccccceeeecCCCC
Q psy12536 174 ------------------------------------SIFIKNIKAKWLPDQPDYTLNDITLDVKNAES 205 (205)
Q Consensus 174 ------------------------------------~I~~~~vsF~Y~~~~~~~vL~~i~l~i~~G~~ 205 (205)
+|+|+||+|+||++ ++++|+|+||+|+|||+
T Consensus 415 ~~~~~~~~~~~~ri~~~l~~~~e~~~~~~~~~~~~~~I~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~ 481 (686)
T TIGR03797 415 LISILAVIPLWERAKPILEALPEVDEAKTDPGKLSGAIEVDRVTFRYRPD-GPLILDDVSLQIEPGEF 481 (686)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcccccCcCCCCCCCceEEEEEEEEEcCCC-CccceeeeEEEECCCCE
Confidence 59999999999865 57899999999999985
No 9
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.94 E-value=8.2e-24 Score=168.33 Aligned_cols=145 Identities=14% Similarity=0.120 Sum_probs=115.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCccccCCCChhhHHHHHHhhHHHHHHHHHH-HhH
Q psy12536 7 TACWALVALIVVDLLIDHQYDLAVQALGMELRVAGCSLIYRKALRLSKTALGDTTVGQVVNLLSNDVNRFDTACIF-LHH 85 (205)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~g~i~~~~~~d~~~l~~~~~~-~~~ 85 (205)
.++++++++.++..++.++..+...+++.++..++|.++|+|++++|+.+|++.++|++++++++|++.+++.+.. ...
T Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~ 124 (529)
T TIGR02857 45 PALGALALAVLLRALLGWLGERAAARAAAAVKSQLRERLLAAVAALGPGWLQGRPSGELATLALEGVEALDGYFARYLPQ 124 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccCChHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3445555667778899999999999999999999999999999999999999999999999999999999876542 111
Q ss_pred H------------------H----HHHHHHH-----HHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHhhhHHH
Q psy12536 86 L------------------I----NRLLGAK-----KMYLGKKTSELRLKTALRTDERVRLMNEIISGIQVIKMYAWERS 138 (205)
Q Consensus 86 ~------------------~----~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~ 138 (205)
+ + ..+++++ ...+.++.++..++..+..++..+.+.|.++|+++||+|+.|+.
T Consensus 125 ~~~~~~~~~~~~~~l~~~~~~l~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~ 204 (529)
T TIGR02857 125 LVLAVIIPLAILAAVFPADWISGLILLLTAPLIPIFMILIGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKA 204 (529)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHH
Confidence 1 0 0001100 44566777778888888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q psy12536 139 FASMVRNARKKEI 151 (205)
Q Consensus 139 ~~~~~~~~~~~~~ 151 (205)
+.+++++..++..
T Consensus 205 ~~~~~~~~~~~~~ 217 (529)
T TIGR02857 205 QAAAIARSSEEYR 217 (529)
T ss_pred HHHHHHHHHHHHH
Confidence 8888766554433
No 10
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.94 E-value=9.5e-24 Score=172.62 Aligned_cols=196 Identities=16% Similarity=0.210 Sum_probs=150.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCccccCCCChhhHHHHHHhhHHHHHHHHHHHh-H
Q psy12536 7 TACWALVALIVVDLLIDHQYDLAVQALGMELRVAGCSLIYRKALRLSKTALGDTTVGQVVNLLSNDVNRFDTACIFLH-H 85 (205)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~g~i~~~~~~d~~~l~~~~~~~~-~ 85 (205)
.++++++++.++..++.+...++..+.+.++..+++..+|+|++++|+.+ +++++|++++++ +|++.+++.+.... .
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~-~~~~~G~~~~r~-~d~~~i~~~~~~~~~~ 265 (694)
T TIGR03375 188 VLAIGVALAIVFDFVLKTLRSYFLDVAGKKADLILSAKLFERVLGLRMEA-RPASVGSFANQL-REFESVRDFFTSATLT 265 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccc-CCCChhHHHHHH-HHHHHHHHHHhhhHHH
Confidence 34445555667788899999999999999999999999999999999998 788999999998 69999987754211 1
Q ss_pred H-------------------HHH---HHH-----HHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHhhhHHH
Q psy12536 86 L-------------------INR---LLG-----AKKMYLGKKTSELRLKTALRTDERVRLMNEIISGIQVIKMYAWERS 138 (205)
Q Consensus 86 ~-------------------~~~---~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~ 138 (205)
. +.+ ++. ++...+.++.++..++..+..++..+.+.|.++|+++||+++.|+.
T Consensus 266 ~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~ 345 (694)
T TIGR03375 266 ALIDLPFALLFLLVIAIIGGPLVWVPLVAIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGR 345 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHH
Confidence 1 000 000 0166788888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----cc-----------------------------------------
Q psy12536 139 FASMVRNARKKEIQQIRGSTYIKGVLLSFIIFH----TR----------------------------------------- 173 (205)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~----------------------------------------- 173 (205)
+.+++++..++..+...+..........+..++ ..
T Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~g~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~ 425 (694)
T TIGR03375 346 FQRRWEQTVAALARSGLKSRFLSNLATNFAQFIQQLVSVAIVVVGVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLL 425 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888887777665555444443333222211111 11
Q ss_pred -------------------------------------eEEEEeceEEecCCCCCCccccceeeecCCCC
Q psy12536 174 -------------------------------------SIFIKNIKAKWLPDQPDYTLNDITLDVKNAES 205 (205)
Q Consensus 174 -------------------------------------~I~~~~vsF~Y~~~~~~~vL~~i~l~i~~G~~ 205 (205)
+|+|+||+|+||++ ++++|+|+||+|+|||+
T Consensus 426 ~~~~~~~~~~~ri~~il~~~~e~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~-~~~vL~~i~l~i~~G~~ 493 (694)
T TIGR03375 426 TRYQQAKTALQSLDELMQLPVERPEGTRFLHRPRLQGEIEFRNVSFAYPGQ-ETPALDNVSLTIRPGEK 493 (694)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCccceEEEEEEEEEeCCC-CccceeeeeEEECCCCE
Confidence 59999999999865 57899999999999985
No 11
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.94 E-value=1.1e-23 Score=172.56 Aligned_cols=149 Identities=13% Similarity=0.122 Sum_probs=118.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCccccCCCChhhHHHHHHhhHHHHHHHHHHHh-
Q psy12536 6 PTACWALVALIVVDLLIDHQYDLAVQALGMELRVAGCSLIYRKALRLSKTALGDTTVGQVVNLLSNDVNRFDTACIFLH- 84 (205)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~g~i~~~~~~d~~~l~~~~~~~~- 84 (205)
+.++++++++.++..++.+...+...+++.++..+++.++|+|++++|+.+|+++++|+++++++ |++.+.+.+....
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~f~~~~~G~~~~r~~-~~~~i~~~~~~~~~ 274 (708)
T TIGR01193 196 GIISIGLIIAYIIQQILSYIQIFLLNVLGQRLSIDIILSYIKHLFELPMSFFSTRRTGEIVSRFT-DASSIIDALASTIL 274 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCchhHHHHHhh-hHHHHHHHHHHHHH
Confidence 34445555667778889999999999999999999999999999999999999999999999998 8888877653211
Q ss_pred HH----------------------HHHHHH-----HHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHhhhHH
Q psy12536 85 HL----------------------INRLLG-----AKKMYLGKKTSELRLKTALRTDERVRLMNEIISGIQVIKMYAWER 137 (205)
Q Consensus 85 ~~----------------------~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~ 137 (205)
.. +..++. ++...+.++.++..++..+..++..+.+.|.++|+++||+++.|+
T Consensus 275 ~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~ 354 (708)
T TIGR01193 275 SLFLDMWILVIVGLFLVRQNMLLFLLSLLSIPVYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEA 354 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccH
Confidence 11 000000 116677888889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy12536 138 SFASMVRNARKKEIQQIR 155 (205)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~ 155 (205)
.+.+++++......+...
T Consensus 355 ~~~~~~~~~~~~~~~~~~ 372 (708)
T TIGR01193 355 ERYSKIDSEFGDYLNKSF 372 (708)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 988887776655444333
No 12
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.93 E-value=2.3e-23 Score=170.27 Aligned_cols=198 Identities=17% Similarity=0.176 Sum_probs=150.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCccccCCCChhhHHHHHHhhHHHHHHHHHH-Hh
Q psy12536 6 PTACWALVALIVVDLLIDHQYDLAVQALGMELRVAGCSLIYRKALRLSKTALGDTTVGQVVNLLSNDVNRFDTACIF-LH 84 (205)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~g~i~~~~~~d~~~l~~~~~~-~~ 84 (205)
+.++++++++.++..++.++..++..+.+.++..+++.++|+|++++|+.+|+++++|++++++ +|++.+.+++.. ..
T Consensus 179 ~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~f~~~~~g~~~~rl-~d~~~i~~~~~~~~~ 257 (694)
T TIGR01846 179 SVLALAMLAVAIFEPALGGLRTYLFAHLTSRIDVELGARLYRHLLGLPLGYFESRRVGDTVARV-RELEQIRNFLTGSAL 257 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHcCCCCHHHHHHHh-hhHHHHHHHHHHHHH
Confidence 3445555666677888999999999999999999999999999999999999999999999999 599999877532 11
Q ss_pred HH----------------------HHHHHHHH-----HHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHhhhHH
Q psy12536 85 HL----------------------INRLLGAK-----KMYLGKKTSELRLKTALRTDERVRLMNEIISGIQVIKMYAWER 137 (205)
Q Consensus 85 ~~----------------------~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~ 137 (205)
.. +..+++++ ...+.++.++..++..+..++..+.+.|.++|+++||+++.|+
T Consensus 258 ~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~ 337 (694)
T TIGR01846 258 TVVLDLLFVVVFLAVMFFYSPTLTGVVIGSLVCYALLSVFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKATATEP 337 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCH
Confidence 11 00000000 4556777788888888899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hcc----------------------------------------
Q psy12536 138 SFASMVRNARKKEIQQIRGSTYIKGVLLSFIIF----HTR---------------------------------------- 173 (205)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~---------------------------------------- 173 (205)
.+.+++++..++..+...+.............+ ...
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~ 417 (694)
T TIGR01846 338 QFQNRWDRQLAAYVAASFRVTNLGNIAGQAIELIQKLTFAILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQL 417 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 988888777665555444433332222221111 111
Q ss_pred -------------------------------------eEEEEeceEEecCCCCCCccccceeeecCCCC
Q psy12536 174 -------------------------------------SIFIKNIKAKWLPDQPDYTLNDITLDVKNAES 205 (205)
Q Consensus 174 -------------------------------------~I~~~~vsF~Y~~~~~~~vL~~i~l~i~~G~~ 205 (205)
.|+++||+|+||++ ++++|+|+||+|+|||+
T Consensus 418 ~~~~~~~~~~~~ri~~~l~~~~e~~~~~~~~~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~ 485 (694)
T TIGR01846 418 WQDFQQTGIALERLGDILNSPTEPRSAGLAALPELRGAITFENIRFRYAPD-SPEVLSNLNLDIKPGEF 485 (694)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCccCCCCCCCCCCCCeEEEEEEEEEcCCC-CccccccceEEECCCCE
Confidence 59999999999865 57899999999999985
No 13
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.93 E-value=4.8e-23 Score=165.86 Aligned_cols=142 Identities=13% Similarity=0.142 Sum_probs=114.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCccccCCCChhhHHHHHHhhHHHHHHHHHH-HhH
Q psy12536 7 TACWALVALIVVDLLIDHQYDLAVQALGMELRVAGCSLIYRKALRLSKTALGDTTVGQVVNLLSNDVNRFDTACIF-LHH 85 (205)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~g~i~~~~~~d~~~l~~~~~~-~~~ 85 (205)
.++++++++.++..++.+...+...+.+.++..++|.++|+|++++|+.+|++.++|++++++++|++.+++.+.. +..
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~g~l~s~~~~dv~~i~~~~~~~~~~ 143 (588)
T PRK11174 64 PPFILLILLFVLRALLAWLRERVGFKAGQHIRQQIRQQVLDKLQQLGPAWIQGKPAGSWATLVLEQVEDMHDFYARYLPQ 143 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhccCCHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3444555667778888999999999999999999999999999999999999999999999999999999877642 111
Q ss_pred H------------------H----HHHHHH-----HHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHhhhHHH
Q psy12536 86 L------------------I----NRLLGA-----KKMYLGKKTSELRLKTALRTDERVRLMNEIISGIQVIKMYAWERS 138 (205)
Q Consensus 86 ~------------------~----~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~ 138 (205)
+ | ..++.+ +...+.++.++..++..+..++.++.+.|.++|+++||+|++|+.
T Consensus 144 ~~~~~~~~~~~~~~l~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~ 223 (588)
T PRK11174 144 MALAVLVPLLILIAVFPINWAAGLILLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEA 223 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHH
Confidence 1 0 000000 055677788888888899999999999999999999999999998
Q ss_pred HHHHHHHHHH
Q psy12536 139 FASMVRNARK 148 (205)
Q Consensus 139 ~~~~~~~~~~ 148 (205)
+.+++++..+
T Consensus 224 ~~~~~~~~~~ 233 (588)
T PRK11174 224 ETESIRSASE 233 (588)
T ss_pred HHHHHHHHHH
Confidence 7777655444
No 14
>PLN03232 ABC transporter C family member; Provisional
Probab=99.93 E-value=5e-23 Score=178.69 Aligned_cols=198 Identities=27% Similarity=0.414 Sum_probs=153.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCccccCCCChhhHHHHHHhhHHHHHHHHHHHhHH-
Q psy12536 8 ACWALVALIVVDLLIDHQYDLAVQALGMELRVAGCSLIYRKALRLSKTALGDTTVGQVVNLLSNDVNRFDTACIFLHHL- 86 (205)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~g~i~~~~~~d~~~l~~~~~~~~~~- 86 (205)
+++++++..++..++.....+...+.+.+++..++..+|+|++++|..++++.++|++++++++|++.+.+....++.+
T Consensus 343 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~l~~~i~~k~l~l~~~~~~~~~~G~i~n~ls~Dv~~i~~~~~~l~~l~ 422 (1495)
T PLN03232 343 YAFLIFFGVTFGVLCESQYFQNVGRVGFRLRSTLVAAIFHKSLRLTHEARKNFASGKVTNMITTDANALQQIAEQLHGLW 422 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455556665555566689999999999999999999999999999999999999999999998876433322
Q ss_pred ------------------HHHHHHHH--------HHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHhhhHHHHH
Q psy12536 87 ------------------INRLLGAK--------KMYLGKKTSELRLKTALRTDERVRLMNEIISGIQVIKMYAWERSFA 140 (205)
Q Consensus 87 ------------------~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~ 140 (205)
++++++++ ...+.++.++..++.++..+++.+.+.|.++|+++||+|++|+.+.
T Consensus 423 ~~p~~ii~~~~~l~~~lg~~~l~~~~v~~l~~pl~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~gi~~IK~~~~e~~~~ 502 (1495)
T PLN03232 423 SAPFRIIVSMVLLYQQLGVASLFGSLILFLLIPLQTLIVRKMRKLTKEGLQWTDKRVGIINEILASMDTVKCYAWEKSFE 502 (1495)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 11111110 4556788899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-----------------------------------------------
Q psy12536 141 SMVRNARKKEIQQIRGSTYIKGVLLSFIIFHTR----------------------------------------------- 173 (205)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------------- 173 (205)
+++++.++.+.+..++.....++...+....+.
T Consensus 503 ~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~~~v~~~~lt~g~vf~~l~l~~~l~~pl~~l~~~~~~~~ 582 (1495)
T PLN03232 503 SRIQGIRNEELSWFRKAQLLSAFNSFILNSIPVVVTLVSFGVFVLLGGDLTPARAFTSLSLFAVLRSPLNMLPNLLSQVV 582 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998888777766555443222111100
Q ss_pred -------------------------------eEEEEeceEEecCCCCCCccccceeeecCCCC
Q psy12536 174 -------------------------------SIFIKNIKAKWLPDQPDYTLNDITLDVKNAES 205 (205)
Q Consensus 174 -------------------------------~I~~~~vsF~Y~~~~~~~vL~~i~l~i~~G~~ 205 (205)
.|+++||+|+||+++++|+|+|+||+||+||+
T Consensus 583 ~a~~s~~Ri~~~L~~~~~~~~~~~~~~~~~~~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~ 645 (1495)
T PLN03232 583 NANVSLQRIEELLLSEERILAQNPPLQPGAPAISIKNGYFSWDSKTSKPTLSDINLEIPVGSL 645 (1495)
T ss_pred HHHHHHHHHHHHHcCccccccccCCcCCCCCcEEEEeeEEEcCCCCCCceeeeeEEEEcCCCE
Confidence 38999999999875457899999999999984
No 15
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.93 E-value=4.9e-23 Score=168.93 Aligned_cols=150 Identities=9% Similarity=0.051 Sum_probs=118.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCccccCCCChhhHHHHHHhhHHHHHHHHHHH-h
Q psy12536 6 PTACWALVALIVVDLLIDHQYDLAVQALGMELRVAGCSLIYRKALRLSKTALGDTTVGQVVNLLSNDVNRFDTACIFL-H 84 (205)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~g~i~~~~~~d~~~l~~~~~~~-~ 84 (205)
+.++++++++.++..++.+...++..+++.++..+++.++|+|++++|+.+|+++++|+++++++.| +.+.+++... .
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~~~g~~~~r~~~~-~~i~~~~~~~~~ 272 (710)
T TIGR03796 194 RPLLLGMGLTALLQGVLTWLQLYYLRRLQIKLAVGMSARFLWHILRLPVRFFAQRHAGDIASRVQLN-DQVAEFLSGQLA 272 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCcccHHHHHhhhH-HHHHHHHHHHHH
Confidence 3445555666777888999999999999999999999999999999999999999999999999988 6777665421 1
Q ss_pred HH----------------------HHHHHHH-----HHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHhhhHH
Q psy12536 85 HL----------------------INRLLGA-----KKMYLGKKTSELRLKTALRTDERVRLMNEIISGIQVIKMYAWER 137 (205)
Q Consensus 85 ~~----------------------~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~ 137 (205)
.. ++.++.+ +...+.++..+..++..+..++..+.+.|.++|+++||++++|+
T Consensus 273 ~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~ 352 (710)
T TIGR03796 273 TTALDAVMLVFYALLMLLYDPVLTLIGIAFAAINVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLES 352 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCH
Confidence 11 0000000 05667778888888888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy12536 138 SFASMVRNARKKEIQQIRG 156 (205)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~ 156 (205)
.+.+++++......+...+
T Consensus 353 ~~~~~~~~~~~~~~~~~~~ 371 (710)
T TIGR03796 353 DFFSRWAGYQAKLLNAQQE 371 (710)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9888887766655554443
No 16
>KOG0055|consensus
Probab=99.93 E-value=1.2e-23 Score=173.24 Aligned_cols=198 Identities=17% Similarity=0.110 Sum_probs=167.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCccccCCCChhhHHHHHHhhHHHHHHHHHHHhHH-
Q psy12536 8 ACWALVALIVVDLLIDHQYDLAVQALGMELRVAGCSLIYRKALRLSKTALGDTTVGQVVNLLSNDVNRFDTACIFLHHL- 86 (205)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~g~i~~~~~~d~~~l~~~~~~~~~~- 86 (205)
.++.++.+.+...+..++...++...+.+...++|.+.++.+++++.+|||.+.+|++.+++++|++.+++.+..-...
T Consensus 73 ~~l~~~~lg~~~~~~~~~q~~c~~~~geRq~~riR~~yl~~iLrQdi~~fD~~~~g~~~~~l~~d~~~I~d~~geKvg~~ 152 (1228)
T KOG0055|consen 73 VALYFVYLGVGVFISGFIQVSCWMRTGERQTARIRSKYLKAILRQDIGWFDTNSTGELVTRLSDDIELIQDAIGEKVGNF 152 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccceeecccccceEEEecCcHHHHHHHHHHHHHHH
Confidence 4455555566666777778888889999999999999999999999999999999999999999999998887532111
Q ss_pred ------------------HH-H--------HHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHhhhHHHH
Q psy12536 87 ------------------IN-R--------LLGAKKMYLGKKTSELRLKTALRTDERVRLMNEIISGIQVIKMYAWERSF 139 (205)
Q Consensus 87 ------------------~~-~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~ 139 (205)
|- + ++++....+.+.+.+...+..++.++..+.+.|.+.++|||.+|+.|+..
T Consensus 153 i~~~~~fi~g~ii~F~~~W~Ltlv~l~~~Pli~~~g~~~a~~~~~~t~ke~~~ya~Ag~iaEe~i~~iRTV~af~gq~~e 232 (1228)
T KOG0055|consen 153 IQLLATFIAGFVIGFYYGWKLTLVMLSFIPLIAIAGGLLARFLSKLTEKEQEAYAKAGSIAEEVISSIRTVYAFNGEKKE 232 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcHHH
Confidence 00 0 11111667777788889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc----------------------------------------------
Q psy12536 140 ASMVRNARKKEIQQIRGSTYIKGVLLSFIIFHTR---------------------------------------------- 173 (205)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------------- 173 (205)
.+++++..+...|...+..++.++..+...++..
T Consensus 233 ~~ry~~~L~~~~k~gi~~g~~~G~~~G~~~~~~~~~~a~~~WyG~~li~~~~~~~g~v~~v~~~vl~g~~sLgqa~p~l~ 312 (1228)
T KOG0055|consen 233 IERYSKALENALKFGIKKGLFKGLGLGFTFFLLFASYALAFWYGSTLILNGGYNGGDVITVFFSVLIGGMSLGQASPHLS 312 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeehhhhhhhhhccccchH
Confidence 9999999999999999988888887776655544
Q ss_pred -------------------------------------eEEEEeceEEecCCCCCCccccceeeecCCCC
Q psy12536 174 -------------------------------------SIFIKNIKAKWLPDQPDYTLNDITLDVKNAES 205 (205)
Q Consensus 174 -------------------------------------~I~~~~vsF~Y~~~~~~~vL~~i~l~i~~G~~ 205 (205)
+|+|+||+|+||++|+.++|+|+||+||+||+
T Consensus 313 ~f~~a~~aa~~I~~~i~~~~~i~~~~~~~~~~~~~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~ 381 (1228)
T KOG0055|consen 313 AFAKARAAAYRIFETIDRKPSIDPYSKGGRVLSSIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQT 381 (1228)
T ss_pred HHhccccchHHHHHHhcCCCCCCcccccCCcccccccceEEEEEEecCCCCCcchhhCCeEEEeCCCCE
Confidence 89999999999999888999999999999984
No 17
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.92 E-value=1.4e-22 Score=162.23 Aligned_cols=145 Identities=17% Similarity=0.097 Sum_probs=112.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCccccCCCChhhHHHHHHhhHHHHHHHHHHH-hHH
Q psy12536 8 ACWALVALIVVDLLIDHQYDLAVQALGMELRVAGCSLIYRKALRLSKTALGDTTVGQVVNLLSNDVNRFDTACIFL-HHL 86 (205)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~g~i~~~~~~d~~~l~~~~~~~-~~~ 86 (205)
++++++++.++..++.+...++..+.+.++..++|.++|+|++++|+.+|++.++|++++++++|++.+...+... ..+
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~i~srl~~Dv~~i~~~~~~~~~~~ 117 (569)
T PRK10789 38 WIGTMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQHPEFYLRHRTGDLMARATNDVDRVVFAAGEGVLTL 117 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCCHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3444555566777888888899999999999999999999999999999999999999999999999987543211 000
Q ss_pred -------------------H-HHHHHHH--------HHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHhhhHHH
Q psy12536 87 -------------------I-NRLLGAK--------KMYLGKKTSELRLKTALRTDERVRLMNEIISGIQVIKMYAWERS 138 (205)
Q Consensus 87 -------------------~-~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~ 138 (205)
| ..++.++ ...+.++.++..++..+..++..+.+.|.++|+++||+|+.|+.
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~ 197 (569)
T PRK10789 118 VDSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQLHERFKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDR 197 (569)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHH
Confidence 0 0000000 55566777777888888889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy12536 139 FASMVRNARKKEIQ 152 (205)
Q Consensus 139 ~~~~~~~~~~~~~~ 152 (205)
+.+++++..++..+
T Consensus 198 ~~~~~~~~~~~~~~ 211 (569)
T PRK10789 198 QSALFAADAEDTGK 211 (569)
T ss_pred HHHHHHHHHHHHHH
Confidence 87777665544333
No 18
>PLN03130 ABC transporter C family member; Provisional
Probab=99.92 E-value=1.1e-22 Score=177.10 Aligned_cols=189 Identities=30% Similarity=0.475 Sum_probs=148.3
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCccccCCCChhhHHHHHHhhHHHHHHHHHHHhHH----------
Q psy12536 17 VVDLLIDHQYDLAVQALGMELRVAGCSLIYRKALRLSKTALGDTTVGQVVNLLSNDVNRFDTACIFLHHL---------- 86 (205)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~g~i~~~~~~d~~~l~~~~~~~~~~---------- 86 (205)
++..++.....+...+++.+++..++..+|+|.+++|...+++.++|++++++++|++.+.+.+..++.+
T Consensus 352 ~~~~~~~~~~~~~~~~~~~~ir~~L~~~i~~k~L~l~~~~~~~~~~G~ivnl~s~Dv~~i~~~~~~l~~l~~~pl~ii~~ 431 (1622)
T PLN03130 352 VLGVLCEAQYFQNVMRVGFRLRSTLVAAVFRKSLRLTHEGRKKFTSGKITNLMTTDAEALQQICQQLHTLWSAPFRIIIA 431 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444678999999999999999999999999999999999999999999998876543322
Q ss_pred ---------HHHHHHH----H----HHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHhhhHHHHHHHHHHHHHH
Q psy12536 87 ---------INRLLGA----K----KMYLGKKTSELRLKTALRTDERVRLMNEIISGIQVIKMYAWERSFASMVRNARKK 149 (205)
Q Consensus 87 ---------~~~~~~~----~----~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~ 149 (205)
+++++++ + ...+.+++++..++.++..+++.+.+.|.++|+++||+|++|+.+.+++++.++.
T Consensus 432 ~~lL~~~lg~~~l~g~~v~~l~~~l~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gi~~IK~~~~E~~~~~~i~~~r~~ 511 (1622)
T PLN03130 432 MVLLYQQLGVASLIGSLMLVLMFPIQTFIISKMQKLTKEGLQRTDKRIGLMNEVLAAMDTVKCYAWENSFQSKVQTVRDD 511 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 1111111 0 5667788888999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcc--------------------------------------------------------
Q psy12536 150 EIQQIRGSTYIKGVLLSFIIFHTR-------------------------------------------------------- 173 (205)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------------------------- 173 (205)
+.+..++.....++...+....+.
T Consensus 512 e~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fg~~~~~~g~Lt~g~vf~~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI 591 (1622)
T PLN03130 512 ELSWFRKAQLLSAFNSFILNSIPVLVTVVSFGVFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNLITQAVNANVSLKRL 591 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888777766555544333221110
Q ss_pred ----------------------eEEEEeceEEecCCCCCCccccceeeecCCCC
Q psy12536 174 ----------------------SIFIKNIKAKWLPDQPDYTLNDITLDVKNAES 205 (205)
Q Consensus 174 ----------------------~I~~~~vsF~Y~~~~~~~vL~~i~l~i~~G~~ 205 (205)
.|+++||+|+|++++++++|+|+||+||+||+
T Consensus 592 ~~~L~~~e~~~~~~~~~~~~~~~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~ 645 (1622)
T PLN03130 592 EELLLAEERVLLPNPPLEPGLPAISIKNGYFSWDSKAERPTLSNINLDVPVGSL 645 (1622)
T ss_pred HHHHcCcccccccCCcccCCCCceEEEeeEEEccCCCCCceeeceeEEecCCCE
Confidence 39999999999865457899999999999984
No 19
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.92 E-value=1.5e-22 Score=162.82 Aligned_cols=193 Identities=6% Similarity=0.095 Sum_probs=146.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCccccCCCChhhHHHHHHhhHHHHHHHHHHH-hHH----
Q psy12536 12 LVALIVVDLLIDHQYDLAVQALGMELRVAGCSLIYRKALRLSKTALGDTTVGQVVNLLSNDVNRFDTACIFL-HHL---- 86 (205)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~g~i~~~~~~d~~~l~~~~~~~-~~~---- 86 (205)
++++.++..++.+...+...+++.++...+|..+|+++.+.|+.++++.+.|++++++++|++.+.+.+... ..+
T Consensus 71 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~ 150 (582)
T PRK11176 71 VIGLMILRGITSFISSYCISWVSGKVVMTMRRRLFGHMMGMPVSFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREG 150 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566677888888888999999999999999999999999999999999999999999999988765321 111
Q ss_pred ------------------HHHHHHH-----HHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHhhhHHHHHHHH
Q psy12536 87 ------------------INRLLGA-----KKMYLGKKTSELRLKTALRTDERVRLMNEIISGIQVIKMYAWERSFASMV 143 (205)
Q Consensus 87 ------------------~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~ 143 (205)
+.+++.+ +...+.++.++..++..+..++..+.+.|.++|+++||+++.|+.+.+++
T Consensus 151 ~~~~~~~~~l~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~ 230 (582)
T PRK11176 151 ASIIGLFIMMFYYSWQLSLILIVIAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRF 230 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHH
Confidence 0000000 05677788888888899999999999999999999999999999888887
Q ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHhhcc----------------------------------------------
Q psy12536 144 RNARKKEIQQIRGSTYI----KGVLLSFIIFHTR---------------------------------------------- 173 (205)
Q Consensus 144 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~---------------------------------------------- 173 (205)
++..+...+...+.... ..+...+..+...
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~ 310 (582)
T PRK11176 231 DKVSNRMRQQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQR 310 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76666554444333222 2222222111111
Q ss_pred ------------------------------eEEEEeceEEecCCCCCCccccceeeecCCCC
Q psy12536 174 ------------------------------SIFIKNIKAKWLPDQPDYTLNDITLDVKNAES 205 (205)
Q Consensus 174 ------------------------------~I~~~~vsF~Y~~~~~~~vL~~i~l~i~~G~~ 205 (205)
.|+++||+|+||++ ++|+|+|+||+|++||+
T Consensus 311 ~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~ 371 (582)
T PRK11176 311 GMAACQTLFAILDLEQEKDEGKRVIERAKGDIEFRNVTFTYPGK-EVPALRNINFKIPAGKT 371 (582)
T ss_pred HHHHHHHHHHHhcCCCcCCCCCcCCCCCCCeEEEEEEEEecCCC-CCccccCceEEeCCCCE
Confidence 59999999999875 57899999999999985
No 20
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.92 E-value=1.4e-22 Score=174.83 Aligned_cols=149 Identities=8% Similarity=0.075 Sum_probs=106.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCccccCC--CChhhHHHHHHhhHHHHHHHHHHHh-
Q psy12536 8 ACWALVALIVVDLLIDHQYDLAVQALGMELRVAGCSLIYRKALRLSKTALGD--TTVGQVVNLLSNDVNRFDTACIFLH- 84 (205)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~--~~~g~i~~~~~~d~~~l~~~~~~~~- 84 (205)
+++.++++.++..++.++..++..+.+.++..++|.++|++++++|+.||++ +++|++++++++|++.++..+....
T Consensus 868 ~~l~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~lR~~lf~~ll~~~~~~fd~~~~~~G~l~srl~~Dv~~l~~~~~~~l~ 947 (1466)
T PTZ00265 868 YSLYILVIAIAMFISETLKNYYNNVIGEKVEKTMKRRLFENILYQEISFFDQDKHAPGLLSAHINRDVHLLKTGLVNNIV 947 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566677788888999999999999999999999999999999999986 8899999999999999987654211
Q ss_pred HH------------------HHH-HHHHH-----HHHHHHHHHHHH-HH-----------------HhHhHHHHHHHHHH
Q psy12536 85 HL------------------INR-LLGAK-----KMYLGKKTSELR-LK-----------------TALRTDERVRLMNE 122 (205)
Q Consensus 85 ~~------------------~~~-~~~~~-----~~~~~~~~~~~~-~~-----------------~~~~~~~~~~~~~e 122 (205)
.+ |.. ++.++ ...+.++.+... .+ ..+..++.++.+.|
T Consensus 948 ~~~~~i~~~i~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E 1027 (1466)
T PTZ00265 948 IFTHFIVLFLVSMVMSFYFCPIVAAVLTGTYFIFMRVFAIRARLTANKDVEKKEINQPGTVFAYNSDDEIFKDPSFLIQE 1027 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccchhhhHHHHHHHHHHHHH
Confidence 11 000 00000 223333322211 11 11224566889999
Q ss_pred HHhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q psy12536 123 IISGIQVIKMYAWERSFASMVRNARKKEIQQIRG 156 (205)
Q Consensus 123 ~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~ 156 (205)
.+.|+++||+|+.|+.+.+++++..+...+...+
T Consensus 1028 ~l~gi~tVka~~~e~~~~~~~~~~~~~~~~~~~~ 1061 (1466)
T PTZ00265 1028 AFYNMNTVIIYGLEDYFCNLIEKAIDYSNKGQKR 1061 (1466)
T ss_pred HHhcHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999888887776655544443
No 21
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.92 E-value=2.4e-22 Score=161.42 Aligned_cols=197 Identities=10% Similarity=0.101 Sum_probs=151.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCccccCCCChhhHHHHHHhhHHHHHHHHHHH-hHH
Q psy12536 8 ACWALVALIVVDLLIDHQYDLAVQALGMELRVAGCSLIYRKALRLSKTALGDTTVGQVVNLLSNDVNRFDTACIFL-HHL 86 (205)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~g~i~~~~~~d~~~l~~~~~~~-~~~ 86 (205)
++++++++.++..++.+...++..+.+.++...+|..+++++.+.|++++++.+.|++.+++++|++.+...+... ...
T Consensus 56 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~~~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~ 135 (571)
T TIGR02203 56 VPLVVIGLAVLRGICSFVSTYLLSWVSNKVVRDIRVRMFEKLLGLPVSFFDRQPTGTLLSRITFDSEQVASAATDAFIVL 135 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556677788899999999999999999999999999999999999999999999999999999998766421 111
Q ss_pred ----------------------HHHHHHH-----HHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHhhhHHHH
Q psy12536 87 ----------------------INRLLGA-----KKMYLGKKTSELRLKTALRTDERVRLMNEIISGIQVIKMYAWERSF 139 (205)
Q Consensus 87 ----------------------~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~ 139 (205)
+..++++ +...+.++.++...+..+..++..+.+.|.++|+++||.++.++.+
T Consensus 136 i~~~~~~~~~~~~l~~~~~~l~~i~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~ 215 (571)
T TIGR02203 136 VRETLTVIGLFIVLLYYSWQLTLIVVVMLPVLSILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYE 215 (571)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHH
Confidence 0000110 1677888888899999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----cc------------------------------------------
Q psy12536 140 ASMVRNARKKEIQQIRGSTYIKGVLLSFIIFH----TR------------------------------------------ 173 (205)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~------------------------------------------ 173 (205)
.+++++..+...+..............+..++ ..
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~ 295 (571)
T TIGR02203 216 TRRFDAVSNRNRRLAMKMTSAGSISSPITQLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNA 295 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777766655554443333222222111111 11
Q ss_pred ----------------------------------eEEEEeceEEecCCCCCCccccceeeecCCCC
Q psy12536 174 ----------------------------------SIFIKNIKAKWLPDQPDYTLNDITLDVKNAES 205 (205)
Q Consensus 174 ----------------------------------~I~~~~vsF~Y~~~~~~~vL~~i~l~i~~G~~ 205 (205)
+|+++||+|+||++ ++++|+|+||+|++||+
T Consensus 296 ~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~-~~~il~~inl~i~~G~~ 360 (571)
T TIGR02203 296 PMQRGLAAAESLFTLLDSPPEKDTGTRAIERARGDVEFRNVTFRYPGR-DRPALDSISLVIEPGET 360 (571)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCeEEEEEEEEEcCCC-CCccccCeeEEecCCCE
Confidence 59999999999876 57899999999999985
No 22
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.92 E-value=3.9e-22 Score=173.46 Aligned_cols=144 Identities=15% Similarity=0.185 Sum_probs=107.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCccccCCCChhhHHHHHHhhHHHHHHHHHHHhH-H--
Q psy12536 10 WALVALIVVDLLIDHQYDLAVQALGMELRVAGCSLIYRKALRLSKTALGDTTVGQVVNLLSNDVNRFDTACIFLHH-L-- 86 (205)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~g~i~~~~~~d~~~l~~~~~~~~~-~-- 86 (205)
.+++++.++..++.+...+.....+.+...+++.++++++++.|+.||++.++|++++|+++|++.+...+..... +
T Consensus 1009 ~iy~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnR~s~Di~~id~~l~~~~~~~~~ 1088 (1522)
T TIGR00957 1009 SVYGALGILQGFAVFGYSMAVSIGGIQASRVLHQDLLHNKLRSPMSFFERTPSGNLVNRFSKELDTVDSMIPPVIKMFMG 1088 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666777777778888889999999999999999999999999999999999999999999877542111 1
Q ss_pred -----------------HHHHH--HH--H----HHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHhhhHHHHHH
Q psy12536 87 -----------------INRLL--GA--K----KMYLGKKTSELRLKTALRTDERVRLMNEIISGIQVIKMYAWERSFAS 141 (205)
Q Consensus 87 -----------------~~~~~--~~--~----~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~ 141 (205)
+.+++ .+ + ...+.+..++..+...+..+...+.+.|.++|+++||+|++++.+.+
T Consensus 1089 ~~~~~i~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~l~~~~~E~l~Gi~tIraf~~~~~f~~ 1168 (1522)
T TIGR00957 1089 SLFNVIGALIVILLATPIAAVIIPPLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIH 1168 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcHHHHHhhhHHHHHH
Confidence 00000 00 0 33333445555555666778889999999999999999999999888
Q ss_pred HHHHHHHHHHHH
Q psy12536 142 MVRNARKKEIQQ 153 (205)
Q Consensus 142 ~~~~~~~~~~~~ 153 (205)
++.+..+...+.
T Consensus 1169 ~~~~~~~~~~~~ 1180 (1522)
T TIGR00957 1169 QSDLKVDENQKA 1180 (1522)
T ss_pred HHHHHHHHHHHH
Confidence 877766655444
No 23
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.91 E-value=7.3e-22 Score=171.77 Aligned_cols=156 Identities=32% Similarity=0.517 Sum_probs=127.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCccccCCCChhhHHHHHHhhHHHHHHHHHHHhH
Q psy12536 6 PTACWALVALIVVDLLIDHQYDLAVQALGMELRVAGCSLIYRKALRLSKTALGDTTVGQVVNLLSNDVNRFDTACIFLHH 85 (205)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~g~i~~~~~~d~~~l~~~~~~~~~ 85 (205)
+.++++++++.++.+++...+.+...+++.+++..++..+|+|++++|..++++.++|+++|+++.|++++......++.
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~~~iy~K~L~l~~~~~~~~~~G~i~nl~s~D~~~i~~~~~~~~~ 437 (1522)
T TIGR00957 358 YFYTGLLFVCACLQTLILHQYFHICFVSGMRIKTAVMGAVYRKALVITNSARKSSTVGEIVNLMSVDAQRFMDLATYINM 437 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhcCCCCHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 34555566666677777777778889999999999999999999999999999999999999999999998776543322
Q ss_pred H-------------------HHHHHHHH--------HHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHhhhHHH
Q psy12536 86 L-------------------INRLLGAK--------KMYLGKKTSELRLKTALRTDERVRLMNEIISGIQVIKMYAWERS 138 (205)
Q Consensus 86 ~-------------------~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~ 138 (205)
+ +.++++++ ...+.+++++..++.++..+++.+.+.|.++|+++||++++|+.
T Consensus 438 ~~~~~~~i~~~~~ll~~~~g~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~~ik~IK~~~~e~~ 517 (1522)
T TIGR00957 438 IWSAPLQVILALYFLWLNLGPSVLAGVAVMVLMVPLNAVMAMKTKTYQVAHMKSKDNRIKLMNEILNGIKVLKLYAWELA 517 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 2 11111111 66678889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy12536 139 FASMVRNARKKEIQQIRGSTYIK 161 (205)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~ 161 (205)
+.+++++.++.+.+..++.....
T Consensus 518 ~~~~i~~~r~~e~~~~~~~~~~~ 540 (1522)
T TIGR00957 518 FLDKVEGIRQEELKVLKKSAYLH 540 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998877766554443
No 24
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.91 E-value=1.1e-21 Score=157.66 Aligned_cols=143 Identities=17% Similarity=0.153 Sum_probs=113.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCccccCCCChhhHHHHHHhhHHHHHHHHHHH-hHH-
Q psy12536 9 CWALVALIVVDLLIDHQYDLAVQALGMELRVAGCSLIYRKALRLSKTALGDTTVGQVVNLLSNDVNRFDTACIFL-HHL- 86 (205)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~g~i~~~~~~d~~~l~~~~~~~-~~~- 86 (205)
+.+++++.++..++.+...++..+++.++...+|..+++++.++|..+|++.+.|++.+++++|++.+.+.+... ..+
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~ 140 (576)
T TIGR02204 61 FAFLLVVALVLALGTAARFYLVTWLGERVVADIRRAVFAHLISLSPSFFDKNRSGEVVSRLTTDTTLLQSVIGSSLSMAL 140 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555667777888899999999999999999999999999999999999999999999999998775421 111
Q ss_pred ---------------------HHHHHH-----HHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHhhhHHHHH
Q psy12536 87 ---------------------INRLLG-----AKKMYLGKKTSELRLKTALRTDERVRLMNEIISGIQVIKMYAWERSFA 140 (205)
Q Consensus 87 ---------------------~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~ 140 (205)
+..+++ ++...+.++.++..++..+..++..+.+.|.++|+++||.++.|+.+.
T Consensus 141 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~ 220 (576)
T TIGR02204 141 RNALMCIGGLIMMFITSPKLTSLVLLAVPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAER 220 (576)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHH
Confidence 000111 015668888888899999999999999999999999999999999977
Q ss_pred HHHHHHHHHHH
Q psy12536 141 SMVRNARKKEI 151 (205)
Q Consensus 141 ~~~~~~~~~~~ 151 (205)
+++++..++..
T Consensus 221 ~~~~~~~~~~~ 231 (576)
T TIGR02204 221 SRFGGAVEKAY 231 (576)
T ss_pred HHHHHHHHHHH
Confidence 77766555433
No 25
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.91 E-value=8.9e-22 Score=170.01 Aligned_cols=144 Identities=8% Similarity=0.071 Sum_probs=115.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCccccCCCChhhHHHHHHhhHHHHHHHHHH-HhHH
Q psy12536 8 ACWALVALIVVDLLIDHQYDLAVQALGMELRVAGCSLIYRKALRLSKTALGDTTVGQVVNLLSNDVNRFDTACIF-LHHL 86 (205)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~g~i~~~~~~d~~~l~~~~~~-~~~~ 86 (205)
+++.++++.++..++.++..++..+.+.++..++|.++|++++++|+.||++.++|++.++++.|++.++..+.. +..+
T Consensus 99 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lR~~~~~~ll~~~~~~fd~~~~~~l~s~l~~d~~~i~~~i~~~~~~~ 178 (1466)
T PTZ00265 99 IIFSLVLIGIFQFILSFISSFCMDVVTTKILKTLKLEFLKSVFYQDGQFHDNNPGSKLTSDLDFYLEQVNAGIGTKFITI 178 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556667778889999999999999999999999999999999999999999999999999999988776532 1111
Q ss_pred ------------------H----HHHH-----HHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHhhhHHHH
Q psy12536 87 ------------------I----NRLL-----GAKKMYLGKKTSELRLKTALRTDERVRLMNEIISGIQVIKMYAWERSF 139 (205)
Q Consensus 87 ------------------~----~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~ 139 (205)
| .+++ .++..++.+++++..++..+..++..+.+.|.++|+++||+|+.|+.+
T Consensus 179 ~~~~~~~i~~~i~~~~~sw~Lalv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~ 258 (1466)
T PTZ00265 179 FTYASAFLGLYIWSLFKNARLTLCITCVFPLIYICGVICNKKVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTI 258 (1466)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhccCHHH
Confidence 0 0000 011666777887788888888899999999999999999999999998
Q ss_pred HHHHHHHHHHHH
Q psy12536 140 ASMVRNARKKEI 151 (205)
Q Consensus 140 ~~~~~~~~~~~~ 151 (205)
.+++++..+...
T Consensus 259 ~~~f~~~~~~~~ 270 (1466)
T PTZ00265 259 LKKFNLSEKLYS 270 (1466)
T ss_pred HHHHHHHHHHHH
Confidence 888776544433
No 26
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.91 E-value=2e-21 Score=155.96 Aligned_cols=136 Identities=8% Similarity=0.029 Sum_probs=104.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCccccCCCChhhHHHHHHhhHHHHHHHHHHHhH-H-------
Q psy12536 15 LIVVDLLIDHQYDLAVQALGMELRVAGCSLIYRKALRLSKTALGDTTVGQVVNLLSNDVNRFDTACIFLHH-L------- 86 (205)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~g~i~~~~~~d~~~l~~~~~~~~~-~------- 86 (205)
..++..+..+...++..++..+++.++|.++|+|++++|+++|+++++|++++++++|++.+.+.+..... .
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~l~~~~~~~~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~ 144 (585)
T TIGR01192 65 FGVFNTIAYVLVAREADRLAHGRRATLLTEAFGRIISMPLSWHQQRGTSNALHTLLRATETLFGLWLEFMRQHLATFVAL 144 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666777777888888888999999999999999999999999999999999988755432111 0
Q ss_pred ---------------HHHHHH-----HHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHhhhHHHHHHHHHHH
Q psy12536 87 ---------------INRLLG-----AKKMYLGKKTSELRLKTALRTDERVRLMNEIISGIQVIKMYAWERSFASMVRNA 146 (205)
Q Consensus 87 ---------------~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~ 146 (205)
+..++. ++...+.++.++..++..+..++..+.+.|.++|+++||+|+.|+.+.+++++.
T Consensus 145 ~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~ 224 (585)
T TIGR01192 145 FLLIPTAFAMDWRLSIVLMVLGILYILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQF 224 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHH
Confidence 000000 005667777888888888889999999999999999999999998877777665
Q ss_pred HHHH
Q psy12536 147 RKKE 150 (205)
Q Consensus 147 ~~~~ 150 (205)
.++.
T Consensus 225 ~~~~ 228 (585)
T TIGR01192 225 TNNL 228 (585)
T ss_pred HHHH
Confidence 5543
No 27
>PLN03130 ABC transporter C family member; Provisional
Probab=99.91 E-value=9e-22 Score=171.37 Aligned_cols=145 Identities=11% Similarity=0.129 Sum_probs=106.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCccccCCCChhhHHHHHHhhHHHHHHHHHHHhH-H
Q psy12536 8 ACWALVALIVVDLLIDHQYDLAVQALGMELRVAGCSLIYRKALRLSKTALGDTTVGQVVNLLSNDVNRFDTACIFLHH-L 86 (205)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~g~i~~~~~~d~~~l~~~~~~~~~-~ 86 (205)
++++++++.++..++.++..++....+.+...+++.+++++++++|+.||+++++|++++|+++|++.+...+..... +
T Consensus 955 ~~~i~~~l~~~~~i~~~~~~~~~~~~~~~~~~~L~~~l~~~ll~~p~~ffd~~~~G~IlnR~s~Di~~id~~l~~~~~~~ 1034 (1622)
T PLN03130 955 YNLIYALLSFGQVLVTLLNSYWLIMSSLYAAKRLHDAMLGSILRAPMSFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMF 1034 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666677778888888888999999999999999999999999999999999999999999998775432111 1
Q ss_pred ------------------HH-HHHH--HH------HHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHhhhHHHH
Q psy12536 87 ------------------IN-RLLG--AK------KMYLGKKTSELRLKTALRTDERVRLMNEIISGIQVIKMYAWERSF 139 (205)
Q Consensus 87 ------------------~~-~~~~--~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~ 139 (205)
+. .++. ++ ..++.+..++..+......+...+.+.|.++|+++||+|+.++.+
T Consensus 1035 ~~~~~~~i~~~i~i~~~~~~~~~~~~pl~~~~~~~~~~~~~~~r~~~r~~~~~~s~~~~~~~Etl~Gi~tIraf~~~~~f 1114 (1622)
T PLN03130 1035 LGQIFQLLSTFVLIGIVSTISLWAIMPLLVLFYGAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRM 1114 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhCCHHHHHhCcHHHHH
Confidence 00 0000 00 222334444455555566778889999999999999999999988
Q ss_pred HHHHHHHHHHHHH
Q psy12536 140 ASMVRNARKKEIQ 152 (205)
Q Consensus 140 ~~~~~~~~~~~~~ 152 (205)
.+...+..+...+
T Consensus 1115 ~~~~~~~~~~~~~ 1127 (1622)
T PLN03130 1115 AEINGRSMDNNIR 1127 (1622)
T ss_pred HHHHHHHHHHHHH
Confidence 8776665554433
No 28
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=2.1e-21 Score=147.44 Aligned_cols=194 Identities=13% Similarity=0.169 Sum_probs=152.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCccccCCCChhhHHHHHHhhHHHHHHHHHHHhHH----
Q psy12536 11 ALVALIVVDLLIDHQYDLAVQALGMELRVAGCSLIYRKALRLSKTALGDTTVGQVVNLLSNDVNRFDTACIFLHHL---- 86 (205)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~g~i~~~~~~d~~~l~~~~~~~~~~---- 86 (205)
++=+..+.+.+.+|..+..++....++-.++|.++|+++...++.-..+.++||+++|+..|++.+++.+.-....
T Consensus 63 ~VR~~aI~Rt~~RY~ERlvsH~AtfrvL~~lRv~~f~kl~p~sp~~~~r~r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a 142 (573)
T COG4987 63 GVRGLAILRTAARYVERLVSHDATFRVLSALRVRLFEKLEPLSPALLLRYRSGDLLNRLVADVDALDNLYLRVIAPAVVA 142 (573)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCChHHHHhcChHhHHHHHHhhHHHHhhHHHHHHhhHHHH
Confidence 3345667889999999999999999999999999999999999999999999999999999999999987532221
Q ss_pred -----------------HHHHHH--------HHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHhhhHHHHHH
Q psy12536 87 -----------------INRLLG--------AKKMYLGKKTSELRLKTALRTDERVRLMNEIISGIQVIKMYAWERSFAS 141 (205)
Q Consensus 87 -----------------~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~ 141 (205)
...+++ ++...+.+.-++..++.....+...+...|.+.|..+.+.||.++.+..
T Consensus 143 ~~~~~~~~i~L~f~~~~~Alll~~~ll~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~ 222 (573)
T COG4987 143 LVLIAVVTIGLSFFSIPLALLLGLILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRT 222 (573)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHH
Confidence 000000 0067777788888888888899999999999999999999999998887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc------------------------------------------------
Q psy12536 142 MVRNARKKEIQQIRGSTYIKGVLLSFIIFHTR------------------------------------------------ 173 (205)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------------ 173 (205)
.+++......+...+...+..+..+...++..
T Consensus 223 ~l~~~e~~~~~~q~k~~~~~~~~~a~~~l~~g~~v~~~l~w~a~~~~~G~~~~~~aa~~ll~~f~~~eaf~~L~~~A~~~ 302 (573)
T COG4987 223 ALEATEASWLKAQRKQARFTGLSDAILLLIAGLLVIGLLLWMAAQVGAGALAQPGAALALLVIFAALEAFEPLAPGAFQH 302 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCcchhHHHHHHHHHHHHHHHHhhhcchhHHH
Confidence 76665555544444444443333332222211
Q ss_pred ---------------------------------eEEEEeceEEecCCCCCCccccceeeecCCCC
Q psy12536 174 ---------------------------------SIFIKNIKAKWLPDQPDYTLNDITLDVKNAES 205 (205)
Q Consensus 174 ---------------------------------~I~~~~vsF~Y~~~~~~~vL~~i~l~i~~G~~ 205 (205)
.++++||||+||++ ++++|+|+||++++||+
T Consensus 303 lgq~~~Sa~Rl~~i~~q~~e~~~~~~~~~~~~~~l~~~~vsF~y~~~-~~~~L~~~~l~l~~GEk 366 (573)
T COG4987 303 LGQVIASARRLNDILDQKPEVTFPDEQTATTGQALELRNVSFTYPGQ-QTKALKNFNLTLAQGEK 366 (573)
T ss_pred hhHHHHHHHHHhhhccCCcccCCCccccCCccceeeeccceeecCCC-ccchhhccceeecCCCe
Confidence 48999999999997 77999999999999996
No 29
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.91 E-value=3.9e-21 Score=154.92 Aligned_cols=141 Identities=14% Similarity=0.173 Sum_probs=110.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCccccCCCChhhHHHHHHhhHHHHHHHHHHHh-HH----
Q psy12536 12 LVALIVVDLLIDHQYDLAVQALGMELRVAGCSLIYRKALRLSKTALGDTTVGQVVNLLSNDVNRFDTACIFLH-HL---- 86 (205)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~g~i~~~~~~d~~~l~~~~~~~~-~~---- 86 (205)
+++..++..++.+...+...+.+.++..++|.++|+++++.|+++|++.++|++++++++|++.+.+.+.... .+
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~ 150 (592)
T PRK10790 71 YVGLQLLAAGLHYAQSLLFNRAAVGVVQQLRTDVMDAALRQPLSAFDTQPVGQLISRVTNDTEVIRDLYVTVVATVLRSA 150 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566778888889999999999999999999999999999999999999999999999999987654321 11
Q ss_pred --------------H----HHHHHHH-----HHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHhhhHHHHHHHH
Q psy12536 87 --------------I----NRLLGAK-----KMYLGKKTSELRLKTALRTDERVRLMNEIISGIQVIKMYAWERSFASMV 143 (205)
Q Consensus 87 --------------~----~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~ 143 (205)
+ ..+++++ .....++.++..++..+..++..+.+.|.++|+++||.|+.|+.+.+++
T Consensus 151 ~~~~~~~~~~~~~~~~l~li~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~ 230 (592)
T PRK10790 151 ALIGAMLVAMFSLDWRMALVAIMIFPAVLVVMVIYQRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERM 230 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHH
Confidence 0 0011100 4445566677777777888889999999999999999999999888887
Q ss_pred HHHHHHHHH
Q psy12536 144 RNARKKEIQ 152 (205)
Q Consensus 144 ~~~~~~~~~ 152 (205)
.+..++..+
T Consensus 231 ~~~~~~~~~ 239 (592)
T PRK10790 231 GEASRSHYM 239 (592)
T ss_pred HHHHHHHHH
Confidence 766554333
No 30
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.91 E-value=3.9e-21 Score=154.17 Aligned_cols=196 Identities=20% Similarity=0.204 Sum_probs=145.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCccccCCCChhhHHHHHHhhHHHHHHHHHHHhHH-
Q psy12536 8 ACWALVALIVVDLLIDHQYDLAVQALGMELRVAGCSLIYRKALRLSKTALGDTTVGQVVNLLSNDVNRFDTACIFLHHL- 86 (205)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~g~i~~~~~~d~~~l~~~~~~~~~~- 86 (205)
+...++++.++..++.+...+.....+.++..++|.++|++++++|+++|++.++|++++++++|++.+...+......
T Consensus 54 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~g~l~~~~t~d~~~~~~~~~~~~~~~ 133 (567)
T COG1132 54 LLLLLLLLALLGGVLRALQSYLGSRLGQKIVADLRRDLFEKLLRLPLSFFDKAKSGDLISRLTNDVEAVSNLVSTVLVLV 133 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhCcCCcchHHHHHHhhHHHHHHHHHHhHHHH
Confidence 4444555556777888888888888889999999999999999999999999999999999999999998776542111
Q ss_pred ------------------H----HHHH-----HHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHhhhHHHH
Q psy12536 87 ------------------I----NRLL-----GAKKMYLGKKTSELRLKTALRTDERVRLMNEIISGIQVIKMYAWERSF 139 (205)
Q Consensus 87 ------------------~----~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~ 139 (205)
| ..++ +++...+.++.++..++..+..++.++.+.|.++|++++|+|+.++..
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~ 213 (567)
T COG1132 134 FTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSLLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRE 213 (567)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHH
Confidence 0 0000 011556666778889999999999999999999999999999999976
Q ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhcc------------------------------------------
Q psy12536 140 ASMVRNARKKEIQQ----IRGSTYIKGVLLSFIIFHTR------------------------------------------ 173 (205)
Q Consensus 140 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~------------------------------------------ 173 (205)
.+++++..+...+. .........+...+..+...
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~ 293 (567)
T COG1132 214 LKRFEEANEELRRANLRASRLEALLAPLMLLLSSLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVS 293 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66665554443333 23222222222222211111
Q ss_pred ----------------------------------eEEEEeceEEecCCCCCCccccceeeecCCCC
Q psy12536 174 ----------------------------------SIFIKNIKAKWLPDQPDYTLNDITLDVKNAES 205 (205)
Q Consensus 174 ----------------------------------~I~~~~vsF~Y~~~~~~~vL~~i~l~i~~G~~ 205 (205)
+|+|+||+|+||+ ++++|+|+||+|+|||+
T Consensus 294 ~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~I~f~~vsf~y~~--~~~vl~~is~~i~~Ge~ 357 (567)
T COG1132 294 LLQRASAAAERLFELLDEEPEVEDPPDPLKDTIGSIEFENVSFSYPG--KKPVLKDISFSIEPGEK 357 (567)
T ss_pred HHHHHHHHHHHHHHHHcCCccccCCCCCCCCCCCeEEEEEEEEEcCC--CCccccCceEEEcCCCE
Confidence 3999999999996 37999999999999985
No 31
>PLN03232 ABC transporter C family member; Provisional
Probab=99.90 E-value=3e-21 Score=167.74 Aligned_cols=146 Identities=13% Similarity=0.136 Sum_probs=107.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCccccCCCChhhHHHHHHhhHHHHHHHHHHHhH-
Q psy12536 7 TACWALVALIVVDLLIDHQYDLAVQALGMELRVAGCSLIYRKALRLSKTALGDTTVGQVVNLLSNDVNRFDTACIFLHH- 85 (205)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~g~i~~~~~~d~~~l~~~~~~~~~- 85 (205)
.++.+++++.++..++.+...+.....+.+...++|.++++++++.|+.||+++++|++++|+++|++.+...+.....
T Consensus 951 ~~l~~y~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~ff~~~~~G~ilnr~s~Di~~id~~l~~~~~~ 1030 (1495)
T PLN03232 951 FYIVVYALLGFGQVAVTFTNSFWLISSSLHAAKRLHDAMLNSILRAPMLFFHTNPTGRVINRFSKDIGDIDRNVANLMNM 1030 (1495)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeCcCCchHHHHHhHhhHHHHHHHHHHHHHH
Confidence 3455556666777778888888889999999999999999999999999999999999999999999998876542111
Q ss_pred H------------------H-HHHHH--HH------HHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHhhhHHH
Q psy12536 86 L------------------I-NRLLG--AK------KMYLGKKTSELRLKTALRTDERVRLMNEIISGIQVIKMYAWERS 138 (205)
Q Consensus 86 ~------------------~-~~~~~--~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~ 138 (205)
+ + ..++. ++ .....+..++..+......+...+.+.|.++|+++||+|+.++.
T Consensus 1031 ~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~~~~~~~E~l~G~~tIraf~~~~~ 1110 (1495)
T PLN03232 1031 FMNQLWQLLSTFALIGTVSTISLWAIMPLLILFYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYDR 1110 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhcChHHHhcCCcHHH
Confidence 1 0 00000 00 11222334445555667778889999999999999999999998
Q ss_pred HHHHHHHHHHHHHH
Q psy12536 139 FASMVRNARKKEIQ 152 (205)
Q Consensus 139 ~~~~~~~~~~~~~~ 152 (205)
+.+..++..+...+
T Consensus 1111 ~~~~~~~~~~~~~~ 1124 (1495)
T PLN03232 1111 MAKINGKSMDNNIR 1124 (1495)
T ss_pred HHHHHHHHHHHHHH
Confidence 87776655554433
No 32
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.90 E-value=5.5e-21 Score=165.97 Aligned_cols=156 Identities=35% Similarity=0.582 Sum_probs=131.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCccccCCCChhhHHHHHHhhHHHHHHHHHHHh
Q psy12536 5 APTACWALVALIVVDLLIDHQYDLAVQALGMELRVAGCSLIYRKALRLSKTALGDTTVGQVVNLLSNDVNRFDTACIFLH 84 (205)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~g~i~~~~~~d~~~l~~~~~~~~ 84 (205)
++.++++++++.++..++.....+...+++.+++..+...+|+|+++++...+++.++|+++|++++|++.+...+...+
T Consensus 121 ~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~~L~~~iy~K~L~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~~~~ 200 (1490)
T TIGR01271 121 AYYLALGLCLLFIVRTLLLHPAIFGLHHLGMQMRIALFSLIYKKTLKLSSRVLDKISTGQLVSLLSNNLNKFDEGLALAH 200 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhcCCCHHHHHHHHHHhHHHHHHHHHHHH
Confidence 34566666777778888888888899999999999999999999999999999999999999999999999988765433
Q ss_pred HH-------------------HHHHHHHH--------HHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHhhhHH
Q psy12536 85 HL-------------------INRLLGAK--------KMYLGKKTSELRLKTALRTDERVRLMNEIISGIQVIKMYAWER 137 (205)
Q Consensus 85 ~~-------------------~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~ 137 (205)
.+ +.++++++ ...+.+++.+..++.++..+++.+.+.|.++||++||+++||+
T Consensus 201 ~~~~~pi~i~~~~~lL~~~~G~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~l~~ik~IK~~~~E~ 280 (1490)
T TIGR01271 201 FVWIAPLQVILLMGLIWELLEVNGFCGLGFLILLALFQACLGQKMMPYRDKRAGKISERLAITSEIIENIQSVKAYCWEE 280 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHH
Confidence 22 11111111 6778889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy12536 138 SFASMVRNARKKEIQQIRGSTYI 160 (205)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~ 160 (205)
.+.+++++.++.+.+..++...+
T Consensus 281 ~~~~~i~~~R~~El~~~~~~~~~ 303 (1490)
T TIGR01271 281 AMEKIIKNIRQDELKLTRKIAYL 303 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998877665544
No 33
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.90 E-value=1.1e-20 Score=152.05 Aligned_cols=139 Identities=9% Similarity=0.089 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCccccCCCChhhHHHHHHhhHHHHHHHHHHHh-HH-------
Q psy12536 15 LIVVDLLIDHQYDLAVQALGMELRVAGCSLIYRKALRLSKTALGDTTVGQVVNLLSNDVNRFDTACIFLH-HL------- 86 (205)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~g~i~~~~~~d~~~l~~~~~~~~-~~------- 86 (205)
+.++..+..+...++..+++.+++..++.++|+|+.++|+.++++.++|++++++++|++.+.+.+.... ..
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~ 144 (588)
T PRK13657 65 FGLFNIIAGVLVARHADRLAHRRRLAVLTEYFERIIQLPLAWHSQRGSGRALHTLLRGTDALFGLWLEFMREHLATLVAL 144 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHCcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455566667777788888888889999999999999999999999999999999998765432111 00
Q ss_pred -----------H-HH---HHHH-----HHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHhhhHHHHHHHHHHH
Q psy12536 87 -----------I-NR---LLGA-----KKMYLGKKTSELRLKTALRTDERVRLMNEIISGIQVIKMYAWERSFASMVRNA 146 (205)
Q Consensus 87 -----------~-~~---~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~ 146 (205)
+ .. ++++ +...+.++.++..++..+..++..+.+.|.+.|+++||.|+.++.+.+++.+.
T Consensus 145 ~~~~~~~~~~~~~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~ 224 (588)
T PRK13657 145 VVLLPLALFMNWRLSLVLVVLGIVYTLITTLVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDI 224 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHH
Confidence 0 00 0000 15667777888888888889999999999999999999999999877776665
Q ss_pred HHHHHHH
Q psy12536 147 RKKEIQQ 153 (205)
Q Consensus 147 ~~~~~~~ 153 (205)
.+...+.
T Consensus 225 ~~~~~~~ 231 (588)
T PRK13657 225 ADNLLAA 231 (588)
T ss_pred HHHHHHH
Confidence 5544433
No 34
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.89 E-value=1.2e-20 Score=150.67 Aligned_cols=133 Identities=12% Similarity=0.110 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCccccCCCChhhHHHHHHhhHHHHHHHHHHHhHH-------
Q psy12536 14 ALIVVDLLIDHQYDLAVQALGMELRVAGCSLIYRKALRLSKTALGDTTVGQVVNLLSNDVNRFDTACIFLHHL------- 86 (205)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~g~i~~~~~~d~~~l~~~~~~~~~~------- 86 (205)
++.++..++.+...++..+.+.++..++|.++|+|++++|+.+|++.++|++++++++|++.++.++......
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~~~~G~l~srl~~Dv~~i~~~~~~~~~~~~~~~~~ 140 (555)
T TIGR01194 61 GLCLLALLFRIGADIFPAYAGMHIIANLRIALCEKILGAPIEEIDRRGAHNLIPLLTHDIDQINAFLFIFPPIAIALAIF 140 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHhcCcchhhHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667788888999999999999999999999999999999999999999999999999998765432111
Q ss_pred ---------------HHHHHHHH-----HHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHhhhHH--HHHHHHH
Q psy12536 87 ---------------INRLLGAK-----KMYLGKKTSELRLKTALRTDERVRLMNEIISGIQVIKMYAWER--SFASMVR 144 (205)
Q Consensus 87 ---------------~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~--~~~~~~~ 144 (205)
+..++.++ .....++.++...+..+..++.++.+.|.+.|++++|+|+.++ ...++++
T Consensus 141 ~~~~~~l~~~~~~L~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~ 220 (555)
T TIGR01194 141 FFCIAYLAYLSVPMFAITISAIIIGTAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQ 220 (555)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhh
Confidence 00000000 3445566677778888889999999999999999999999853 3334444
Q ss_pred HH
Q psy12536 145 NA 146 (205)
Q Consensus 145 ~~ 146 (205)
+.
T Consensus 221 ~~ 222 (555)
T TIGR01194 221 ES 222 (555)
T ss_pred HH
Confidence 33
No 35
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.89 E-value=1.8e-20 Score=149.57 Aligned_cols=144 Identities=12% Similarity=0.009 Sum_probs=108.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCccccCCCChhhHHHHHHhhHHHHHHHHHH-Hh-
Q psy12536 7 TACWALVALIVVDLLIDHQYDLAVQALGMELRVAGCSLIYRKALRLSKTALGDTTVGQVVNLLSNDVNRFDTACIF-LH- 84 (205)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~g~i~~~~~~d~~~l~~~~~~-~~- 84 (205)
.++++++++.++..++.+...+...+.+.++..++|.++|+|++++|+. ..++..+++++|++.+++.+.. ..
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~-----~~~~~~~~~~~d~~~i~~~~~~~~~~ 121 (544)
T TIGR01842 47 MLTVLALGLYLFLGLLDALRSFVLVRIGEKLDGALNQPIFAASFSATLR-----RGKIDGLQALRDLDQLRQFLTGPGLF 121 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc-----CccchHHHHHHHHHHHHHHHhhhHHH
Confidence 3445556667778889999999999999999999999999999999984 3366788889999998876542 11
Q ss_pred HH---------------------HHHHHHHH-----HHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHhhhHHH
Q psy12536 85 HL---------------------INRLLGAK-----KMYLGKKTSELRLKTALRTDERVRLMNEIISGIQVIKMYAWERS 138 (205)
Q Consensus 85 ~~---------------------~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~ 138 (205)
.+ +..+++++ .....++.++..++..+..++..+.+.|.++|+++||+|+.|+.
T Consensus 122 ~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~ 201 (544)
T TIGR01842 122 AFFDAPWMPIYLLVCFLLHPWIGILALGGAVVLVGLALLNNRATKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGN 201 (544)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHH
Confidence 11 00010000 44455666777788888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy12536 139 FASMVRNARKKEIQQIR 155 (205)
Q Consensus 139 ~~~~~~~~~~~~~~~~~ 155 (205)
+.+++++..++..+...
T Consensus 202 ~~~~~~~~~~~~~~~~~ 218 (544)
T TIGR01842 202 LTKRWGRFHSKYLSAQS 218 (544)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88888776665544433
No 36
>KOG0057|consensus
Probab=99.89 E-value=1.5e-20 Score=143.08 Aligned_cols=198 Identities=9% Similarity=0.078 Sum_probs=149.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCccccCCCChhhHHHHHHhhHHHHHHHHHHHhH
Q psy12536 6 PTACWALVALIVVDLLIDHQYDLAVQALGMELRVAGCSLIYRKALRLSKTALGDTTVGQVVNLLSNDVNRFDTACIFLHH 85 (205)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~g~i~~~~~~d~~~l~~~~~~~~~ 85 (205)
...+.+++++-+...++..+......+..+++......++|++++.+++++|.+..+|++.+.+......+..++.....
T Consensus 74 ~~~~~~y~iar~~s~~F~el~~~vfa~v~q~~iR~~~~~vf~~~~~ld~~~~~~~~tG~l~~~idRgsraI~~vl~~~V~ 153 (591)
T KOG0057|consen 74 TALLAGYGIARLGSSVFNELRNFVFAKVAQRVIRDSSSDVFRHLMSLDLSFFLSRGTGALNRIIDRGSRAISFVLSAMVF 153 (591)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCcchHHHHHHhhhhHHHHHHHHHHH
Confidence 34566677777888899999999999999999999999999999999999999999999999998888777766542111
Q ss_pred -H------HH-----------------HHHHHH-----HHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHhhhH
Q psy12536 86 -L------IN-----------------RLLGAK-----KMYLGKKTSELRLKTALRTDERVRLMNEIISGIQVIKMYAWE 136 (205)
Q Consensus 86 -~------~~-----------------~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e 136 (205)
+ +. .+..++ .......-.++.++...+.++....+.|.+.+..+||+||.|
T Consensus 154 ~i~p~~~~i~~v~~~l~~~~Ga~~~li~~~~v~~Y~a~Ti~~t~~Rn~fR~~~N~Adn~as~~~~dsL~Nye~VKsfNnE 233 (591)
T KOG0057|consen 154 NIIPTLFEIALVSGILYYKFGAAFALITLGTVGAYAAFTIVVTRWRNRFRKAMNNADNSASRRAYDSLINYEIVKSFNNE 233 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhheeEEeehhHHHHHHHHHHhhhhHHHHHHHHHHhhHHHHHHcccH
Confidence 1 00 000011 333444555677788888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhcc---------------------------------------
Q psy12536 137 RSFASMVRNARKKEIQQI----RGSTYIKGVLLSFIIFHTR--------------------------------------- 173 (205)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~--------------------------------------- 173 (205)
++..+++........+.. ....+++..+..+..+...
T Consensus 234 ~~Ea~~y~~~l~~~~~~~~~~~~sl~~lnfgQ~~iFsv~~~~im~l~~~gi~~~~mtvgdlv~~n~l~~qL~~~l~~Lg~ 313 (591)
T KOG0057|consen 234 EYEASRYDGSLKTYERAGLKYSSSLAFLNFGQKAIFSVALTFIMVLGSNGIAAGKMTVGDLVMVNSLLFQLSLPLNFLGS 313 (591)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccchhhHHHHHHHHHhHHHHHHH
Confidence 998888877666544433 3333443333333222111
Q ss_pred -------------------------------------eEEEEeceEEecCCCCCCccccceeeecCCCC
Q psy12536 174 -------------------------------------SIFIKNIKAKWLPDQPDYTLNDITLDVKNAES 205 (205)
Q Consensus 174 -------------------------------------~I~~~~vsF~Y~~~~~~~vL~~i~l~i~~G~~ 205 (205)
.|+|+||+|+|++ ++++|+|+||+||+||+
T Consensus 314 vyr~~~q~l~Dm~~~~~l~~~~~~i~~~~~~i~~~~~~I~F~dV~f~y~~--k~~iL~gvsf~I~kGek 380 (591)
T KOG0057|consen 314 VYRELRQALTDMRTLFILLEVDEDIQEAALPIELFGGSIEFDDVHFSYGP--KRKVLKGVSFTIPKGEK 380 (591)
T ss_pred HHHHHHHHHHhHHHHHhhhhhhhhhhhccCCcccCCCcEEEEeeEEEeCC--CCceecceeEEecCCCE
Confidence 7999999999997 47899999999999986
No 37
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=7.5e-20 Score=140.73 Aligned_cols=199 Identities=13% Similarity=0.171 Sum_probs=159.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCccccCCCChhhHHHHHHhhHHHHHHHHHH-H
Q psy12536 5 APTACWALVALIVVDLLIDHQYDLAVQALGMELRVAGCSLIYRKALRLSKTALGDTTVGQVVNLLSNDVNRFDTACIF-L 83 (205)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~g~i~~~~~~d~~~l~~~~~~-~ 83 (205)
.+.++.+++++.+++.++.....+...+.+.+++..+|+.+++|+.++++.+-.+.++|+..+.+...++++...+.. +
T Consensus 39 l~~~~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l~~l~~~gp~~~~~~~~g~~atl~~egve~l~~Y~~ryL 118 (559)
T COG4988 39 LLPLLILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVLDKLAKLGPAFIAQKPAGSAATLALEGIEQLEPYYARYL 118 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhcCCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 345667778888999999999999999999999999999999999999999999999999999999999999888753 3
Q ss_pred hHH------------------HH-HHHHHH--------HHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHhhhH
Q psy12536 84 HHL------------------IN-RLLGAK--------KMYLGKKTSELRLKTALRTDERVRLMNEIISGIQVIKMYAWE 136 (205)
Q Consensus 84 ~~~------------------~~-~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e 136 (205)
+.+ |. +++.++ +..++.+.++..++++......++...|.++|+.|+|+|+..
T Consensus 119 Pq~~~~~ivp~~i~i~v~~~~w~aalIllit~PlIPlfMilvg~~a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~~ 198 (559)
T COG4988 119 PQMFLSAIVPLLILIAIFFFNWAAALILLITAPLIPLFMILVGLAAKDASEKQFSALARLSGHFLDRLRGLETLRAFGRT 198 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHhccc
Confidence 332 00 011000 888999999999999999999999999999999999999987
Q ss_pred HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---------------------------------------
Q psy12536 137 RSFASMV----RNARKKEIQQIRGSTYIKGVLLSFIIFHTR--------------------------------------- 173 (205)
Q Consensus 137 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------- 173 (205)
+...+++ ++.|+..++..+....-+.+...+......
T Consensus 199 ~~~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~lsiAlvAv~~g~~ll~~G~ltl~~~l~~LiLAPEff~PlR~lG 278 (559)
T COG4988 199 EATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYLSIALVAVYIGFRLLGEGDLTLFAGLFVLILAPEFFQPLRDLG 278 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccHHHHHHHHHHhHHHHHHHHHHH
Confidence 7655544 555666666666655554444443332221
Q ss_pred -----------------------------------------eEEEEeceEEecCCCCCCccccceeeecCCCC
Q psy12536 174 -----------------------------------------SIFIKNIKAKWLPDQPDYTLNDITLDVKNAES 205 (205)
Q Consensus 174 -----------------------------------------~I~~~~vsF~Y~~~~~~~vL~~i~l~i~~G~~ 205 (205)
+++.+|++|+||++ +++++|+||+++||++
T Consensus 279 s~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~~~~~~~~~~~ei~~~~l~~~y~~g--~~~l~~l~~t~~~g~~ 349 (559)
T COG4988 279 SFFHAAAAGEAAADKLFTLLESPVATPGSGEKAEVANEPPIEISLENLSFRYPDG--KPALSDLNLTIKAGQL 349 (559)
T ss_pred HHHHHHhhhhhHHHHHHHHhcCCCCCCCCccccccccCCCceeeecceEEecCCC--CcccCCceeEecCCcE
Confidence 56666999999986 4999999999999984
No 38
>PTZ00243 ABC transporter; Provisional
Probab=99.88 E-value=3.8e-20 Score=161.12 Aligned_cols=124 Identities=14% Similarity=0.094 Sum_probs=89.8
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHhcCCccccCCCChhhHHHHHHhhHHHHHHHHHHH-hHH-----------------
Q psy12536 25 QYDLAVQALGMELRVAGCSLIYRKALRLSKTALGDTTVGQVVNLLSNDVNRFDTACIFL-HHL----------------- 86 (205)
Q Consensus 25 ~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~g~i~~~~~~d~~~l~~~~~~~-~~~----------------- 86 (205)
+..+.......+....++.++++++++.|+.||++.++|++++++++|++.+.+.+... ..+
T Consensus 1017 l~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ffd~~~~G~ilnR~s~Di~~id~~l~~~l~~~~~~~~~~i~~li~~~~~ 1096 (1560)
T PTZ00243 1017 LRFFLSYEAMRRGSRNMHRDLLRSVSRGTMSFFDTTPLGRILNRFSRDIDILDNTLPMSYLYLLQCLFSICSSILVTSAS 1096 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhccCCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445556667799999999999999999999999999999999999998765421 111
Q ss_pred -HHHHHHHH---------HHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHhhhHHHHHHHHHHHHH
Q psy12536 87 -INRLLGAK---------KMYLGKKTSELRLKTALRTDERVRLMNEIISGIQVIKMYAWERSFASMVRNARK 148 (205)
Q Consensus 87 -~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~ 148 (205)
+.+++.++ ...+.+..++..+......+...+.+.|.+.|+++||+|+.++.+.+++.+..+
T Consensus 1097 ~p~~~~~~i~~~~~~~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~~~~~~~~~~~d 1168 (1560)
T PTZ00243 1097 QPFVLVALVPCGYLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHLVMQEALRRLD 1168 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHHHHHHHHHHHHH
Confidence 00000000 233444455555556667788899999999999999999999987777655444
No 39
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.87 E-value=1.5e-19 Score=144.33 Aligned_cols=112 Identities=14% Similarity=0.124 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCccccCCCChhhHHHHHHhhHHHHHHHHHHHhHH-------------
Q psy12536 20 LLIDHQYDLAVQALGMELRVAGCSLIYRKALRLSKTALGDTTVGQVVNLLSNDVNRFDTACIFLHHL------------- 86 (205)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~g~i~~~~~~d~~~l~~~~~~~~~~------------- 86 (205)
.++.++..++..+.+.++..++|.++|+|++++|+.+|+++++|++++++++|++.+...+..+..+
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~lR~~l~~~ll~~~~~~~~~~~~g~~lsrl~~dv~~i~~~~~~l~~~~~~~~~~i~~~~~ 141 (547)
T PRK10522 62 MAVTLGSQLALTTLGHHFVYRLRSEFIKRILDTHVERIEQLGSASLLASLTSDVRNITIAFVRLPELVQGIILTLGSAAY 141 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccCccchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677888888999999999999999999999999999999999999999999988653322211
Q ss_pred -----HH-HHH---HH-----HHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHH
Q psy12536 87 -----IN-RLL---GA-----KKMYLGKKTSELRLKTALRTDERVRLMNEIISGIQVIK 131 (205)
Q Consensus 87 -----~~-~~~---~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik 131 (205)
|. +++ ++ +...+.++.++..++..+..++.++.+.|.++|+++++
T Consensus 142 l~~~~~~l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~ 200 (547)
T PRK10522 142 LAWLSPKMLLVTAIWMAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELT 200 (547)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhh
Confidence 00 000 00 15566777788888888999999999999999999996
No 40
>KOG0054|consensus
Probab=99.87 E-value=2.5e-20 Score=156.82 Aligned_cols=148 Identities=16% Similarity=0.176 Sum_probs=113.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCccccCCCChhhHHHHHHhhHHHHHHHHHHHhH
Q psy12536 6 PTACWALVALIVVDLLIDHQYDLAVQALGMELRVAGCSLIYRKALRLSKTALGDTTVGQVVNLLSNDVNRFDTACIFLHH 85 (205)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~g~i~~~~~~d~~~l~~~~~~~~~ 85 (205)
...+.++.++.++..++...........+.+....+...+++++++.|+.||+.+++|.|+||+++|++.+...+.....
T Consensus 858 ~~~~~vY~~l~~~~~~~~~~rs~~~~~~~l~aS~~Lh~~ml~~Ilrapm~FFdtTP~GRILNRFSkD~~~vD~~Lp~~~~ 937 (1381)
T KOG0054|consen 858 SFYLGVYALLGVASSLLTLLRSFLFAKGGLKASRKLHDKLLNSILRAPMSFFDTTPTGRILNRFSKDIDTVDVLLPFTLE 937 (1381)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhcCCCCccchhhhcccchHHHHHhhHHHHH
Confidence 34566667777777777778888888899999999999999999999999999999999999999999998766543221
Q ss_pred H-------------------HHHHH-----HHH----HHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHhhhHH
Q psy12536 86 L-------------------INRLL-----GAK----KMYLGKKTSELRLKTALRTDERVRLMNEIISGIQVIKMYAWER 137 (205)
Q Consensus 86 ~-------------------~~~~~-----~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~ 137 (205)
. +..++ +++ ..++.+..++..+-....++...+++.|.++|+.|||+|+.++
T Consensus 938 ~~~~~~~~~l~~~~vi~~~~P~fli~~~pl~v~~~~~~~~Y~~tsReLkRLesitRSPi~sh~~Etl~GlsTIRAf~~~~ 1017 (1381)
T KOG0054|consen 938 FFLQSLLNVLGILVVISYVTPWFLIAIIPLGVIYYFVQRYYLATSRELKRLESITRSPIYSHFSETLQGLSTIRAFGKEE 1017 (1381)
T ss_pred HHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhcccchHHHhHHHHhcCcceeeeccccH
Confidence 1 00000 011 3444445555555566678888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q psy12536 138 SFASMVRNARKKEIQQ 153 (205)
Q Consensus 138 ~~~~~~~~~~~~~~~~ 153 (205)
+|.+.+....+...+.
T Consensus 1018 rf~~~~~~~~D~~~~~ 1033 (1381)
T KOG0054|consen 1018 RFIQENDELIDENSRA 1033 (1381)
T ss_pred HHHHHHHHHhhhhHHH
Confidence 9998887776655443
No 41
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.87 E-value=2.7e-19 Score=155.56 Aligned_cols=132 Identities=11% Similarity=0.150 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCccccCCCChhhHHHHHHhhHHHHHHHHHHH-hHH---------
Q psy12536 17 VVDLLIDHQYDLAVQALGMELRVAGCSLIYRKALRLSKTALGDTTVGQVVNLLSNDVNRFDTACIFL-HHL--------- 86 (205)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~g~i~~~~~~d~~~l~~~~~~~-~~~--------- 86 (205)
++..++.+...+.....+.+...+++.++++++++.|+.||++.++|++++|+++|++.+...+... ..+
T Consensus 936 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~i~ 1015 (1490)
T TIGR01271 936 DSVLALGFFRGLPLVHTLLTVSKRLHEQMLHSVLQAPMAVLNTMKAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVLG 1015 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666777788889999999999999999999999999999999999999999988765421 111
Q ss_pred ----------HHHHHHH---H-----HHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHhhhHHHHHHHHHHHHH
Q psy12536 87 ----------INRLLGA---K-----KMYLGKKTSELRLKTALRTDERVRLMNEIISGIQVIKMYAWERSFASMVRNARK 148 (205)
Q Consensus 87 ----------~~~~~~~---~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~ 148 (205)
+.+++.+ + ..++.+..++..+......+...+.+.|.++|+.+||+|++++.+.+++.+..+
T Consensus 1016 ~l~~i~~~~p~l~l~~~~l~~~~~~~~~~~~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~~~~~~~~ 1095 (1490)
T TIGR01271 1016 AIFVVSVLQPYIFIAAIPVAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKALN 1095 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHHHHHHHHH
Confidence 0000000 0 223334445555556667788899999999999999999999998888766655
No 42
>PTZ00243 ABC transporter; Provisional
Probab=99.85 E-value=8e-19 Score=152.96 Aligned_cols=163 Identities=24% Similarity=0.365 Sum_probs=135.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCccccC--CCChhhHHHHHHhhHHHHHHHHHHH
Q psy12536 6 PTACWALVALIVVDLLIDHQYDLAVQALGMELRVAGCSLIYRKALRLSKTALG--DTTVGQVVNLLSNDVNRFDTACIFL 83 (205)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~--~~~~g~i~~~~~~d~~~l~~~~~~~ 83 (205)
+.++++++++.++..++.....+...+.+.+++..+...+|+|.++++..... +.++|+++|.+++|++.+..++..+
T Consensus 285 ~~l~~~l~~~~~~~~~~~~~~~~~~~r~~~~~r~~L~~~if~K~l~ls~~~~~~~~~~~G~i~nl~s~Dv~~i~~~~~~~ 364 (1560)
T PTZ00243 285 LGLVLTLFLTQLIQSVCLHRFYYISIRCGLQYRSALNALIFEKCFTISSKSLAQPDMNTGRIINMMSTDVERINSFMQYC 364 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhCCCCCCHHHHHHHHHHhHHHHHHHHHHH
Confidence 34555666777888888888899999999999999999999999999987776 5689999999999999999887554
Q ss_pred hHH-------------------HHHHHHHH--------HHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHhhhH
Q psy12536 84 HHL-------------------INRLLGAK--------KMYLGKKTSELRLKTALRTDERVRLMNEIISGIQVIKMYAWE 136 (205)
Q Consensus 84 ~~~-------------------~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e 136 (205)
+.+ +.++++++ ..++.+++.+..++.++..+++.+.++|.++||++||.++||
T Consensus 365 ~~l~~~Pl~li~~~~lL~~~lG~~al~gv~vl~v~~pl~~~~~k~~~~~~~~~~~~~D~Ri~~~~E~l~gIr~IK~~~wE 444 (1560)
T PTZ00243 365 MYLWSSPMVLLLSILLLSRLVGWCALMAVAVLLVTLPLNGAIMKHQMAARRKIAKAADARVKATNEFFSGIRIAKFMAWE 444 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 433 22222221 777888899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12536 137 RSFASMVRNARKKEIQQIRGSTYIKGVLLSFI 168 (205)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (205)
+.+.+++++.++.+.+..++......+...+.
T Consensus 445 ~~f~~ri~~~R~~El~~l~~~~~~~~~~~~~~ 476 (1560)
T PTZ00243 445 PCFVANIEDKRARELRYLRDVQLARVATSFVN 476 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998877776666554443
No 43
>PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A.
Probab=99.83 E-value=7.2e-18 Score=123.12 Aligned_cols=160 Identities=19% Similarity=0.243 Sum_probs=125.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCccccCCCChhhHHHHHHhhHHHHHHHHHHHhH-H
Q psy12536 8 ACWALVALIVVDLLIDHQYDLAVQALGMELRVAGCSLIYRKALRLSKTALGDTTVGQVVNLLSNDVNRFDTACIFLHH-L 86 (205)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~g~i~~~~~~d~~~l~~~~~~~~~-~ 86 (205)
+..+++++.++...+.....+...+.+.+++.+++.++++|+++.|..+|+++++|++.+++++|++.+++.+..... .
T Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~l~~~i~~d~~~i~~~~~~~~~~~ 122 (275)
T PF00664_consen 43 LAFLLIAIFLLIFLFSYIYFYLSSRISQRIRKDLRKRLFEKLLRLPYSYFDKNSSGELLSRITNDIEQIENFLSSSLFQI 122 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccccccccc
Confidence 334444455566666666777788999999999999999999999999999999999999999999999888753221 1
Q ss_pred ----------------------HHHH-H----HHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHhhhHHHH
Q psy12536 87 ----------------------INRL-L----GAKKMYLGKKTSELRLKTALRTDERVRLMNEIISGIQVIKMYAWERSF 139 (205)
Q Consensus 87 ----------------------~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~ 139 (205)
+..+ . .++...+.++.++..++..+..++..+.+.|.++|+++||+|+.|+.+
T Consensus 123 ~~~~~~~i~~~~~~~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~ 202 (275)
T PF00664_consen 123 ISSIISIIFSLILLFFISWKLALILLIILPLLFLISFIFSKKIRKLSKKYQEANSELNSFLSESLSGIRTIKAFGAEDYF 202 (275)
T ss_dssp HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTSHHHH
T ss_pred ccccchhhhhhhcccccccccccccchhhhhhHhhhhhhccccccccccccccccccccccccchhhhHHHHHHHhhHHH
Confidence 0000 0 011788899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12536 140 ASMVRNARKKEIQQIRGSTYIKGVLLSF 167 (205)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (205)
.+++++..++..+...+...........
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (275)
T PF00664_consen 203 LERFNKALEKYRKASFKYAKIQALLSSI 230 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998888877666666555555544443
No 44
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.82 E-value=9.5e-18 Score=136.18 Aligned_cols=141 Identities=13% Similarity=0.043 Sum_probs=110.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCccccCCCChhhHHHHHHhhHHHHHHHHHHHhH-H
Q psy12536 8 ACWALVALIVVDLLIDHQYDLAVQALGMELRVAGCSLIYRKALRLSKTALGDTTVGQVVNLLSNDVNRFDTACIFLHH-L 86 (205)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~g~i~~~~~~d~~~l~~~~~~~~~-~ 86 (205)
+++++++..++..+..+...++..++..++..+++.+.+++....+..+|++ ++|++.+++++|++.+.+.+..... +
T Consensus 141 ~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~d~-~~g~~~srlt~Dv~~i~~~~~~~~~~l 219 (659)
T TIGR00954 141 WFLIAPPASFINSAIKYLLKELKLRFRVRLTRYLYSKYLSGFTFYKVSNLDS-RIQNPDQLLTQDVEKFCDSVVELYSNL 219 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeccCCC-CCCCccccHHHHHHHHHHHHHHHHHHH
Confidence 3444455666777788888888888888999999999999988899889987 7899999999999998877643221 1
Q ss_pred -------------------HHH-H--------HHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHhhhHHH
Q psy12536 87 -------------------INR-L--------LGAKKMYLGKKTSELRLKTALRTDERVRLMNEIISGIQVIKMYAWERS 138 (205)
Q Consensus 87 -------------------~~~-~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~ 138 (205)
+.. + ..++...+.++..+...+..+..++..+.+.|.++|+++||+|+.|+.
T Consensus 220 ~~~~~~ii~~~~~L~~~~~~~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~ 299 (659)
T TIGR00954 220 TKPILDVILYSFKLLTALGSVGPAGLFAYLFATGVVLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKV 299 (659)
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHH
Confidence 000 0 001177788999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHH
Q psy12536 139 FASMVRNARKK 149 (205)
Q Consensus 139 ~~~~~~~~~~~ 149 (205)
..+++++..++
T Consensus 300 e~~~~~~~~~~ 310 (659)
T TIGR00954 300 EKETVMSSFYR 310 (659)
T ss_pred HHHHHHHHHHH
Confidence 66665554443
No 45
>KOG0056|consensus
Probab=99.77 E-value=3e-18 Score=129.47 Aligned_cols=183 Identities=14% Similarity=0.122 Sum_probs=126.7
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCccccCCCChhhHHHHHHhhHHHHHHHHHHHh-----HH--------
Q psy12536 20 LLIDHQYDLAVQALGMELRVAGCSLIYRKALRLSKTALGDTTVGQVVNLLSNDVNRFDTACIFLH-----HL-------- 86 (205)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~g~i~~~~~~d~~~l~~~~~~~~-----~~-------- 86 (205)
++++-+..+++..+++....++..++|+|+..+++.|+-++++||++..+....+.+. +..... .+
T Consensus 273 G~~~nlRtfLWi~VqQyttR~ie~~lfrHlh~LSlrwHL~rrtGeVLrvmdrGtssvt-ll~yvVF~i~PtllDl~va~v 351 (790)
T KOG0056|consen 273 GFLNNLRTFLWIPVQQYTTREIETELFRHLHNLSLRWHLNRRTGEVLRVMDRGTSSVT-LLEYVVFQIGPTLLDLGVAMV 351 (790)
T ss_pred cchhhhheeEEEEhhHhHHHHHHHHHHHHHHhhceeeeecccccceeehhccCcchhh-HHHHHHhhcccHHHHhhhhhh
Confidence 4555566667778888889999999999999999999999999999998877666554 111110 00
Q ss_pred --------HHHHHHHH--------HHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHhhhHHHHHHHHHHH----
Q psy12536 87 --------INRLLGAK--------KMYLGKKTSELRLKTALRTDERVRLMNEIISGIQVIKMYAWERSFASMVRNA---- 146 (205)
Q Consensus 87 --------~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~---- 146 (205)
|..++.++ ...+..---++.+++..+-.+......|++-+.+|||-|+.|++..+++.+.
T Consensus 352 YF~~~Fn~wFgLIVfl~m~lY~~~Ti~iTeWRTk~rR~Mn~~~nesrAr~vDsllNFETVKyy~Ae~yEverYreAil~Y 431 (790)
T KOG0056|consen 352 YFFIKFNIWFGLIVFLMMLLYCYVTIKITEWRTKARRKMNNSWNESRARQVDSLLNFETVKYYNAEDYEVERYREAILKY 431 (790)
T ss_pred hhhhhHhHHHHHHHHHHHHHHhheeeeeehhhHHHHHHhhhhhhhhhhhhhhhhhcchhhhccCchhhhHHHHHHHHHHH
Confidence 11111111 1111111223444455555555667789999999999999998877666554
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcc-----------------------------------------------------
Q psy12536 147 RKKEIQQIRGSTYIKGVLLSFIIFHTR----------------------------------------------------- 173 (205)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------------------- 173 (205)
.+.+.+......+++..++.+..+...
T Consensus 432 qk~E~ks~~sLnfLN~~Qn~Ii~lgll~gsll~aY~Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiDmEn 511 (790)
T KOG0056|consen 432 QKQEWKSLASLNFLNIVQNGIIGLGLLAGSLLCAYRVTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFIDMEN 511 (790)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhHHhhhhheeeeeeeeccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhhhHHH
Confidence 445555555566666666655444333
Q ss_pred -------------------------eEEEEeceEEecCCCCCCccccceeeecCCCC
Q psy12536 174 -------------------------SIFIKNIKAKWLPDQPDYTLNDITLDVKNAES 205 (205)
Q Consensus 174 -------------------------~I~~~~vsF~Y~~~~~~~vL~~i~l~i~~G~~ 205 (205)
.|+|+||+|+|+++ +|||+||||+++||++
T Consensus 512 mfdllkee~eVvd~P~a~pl~~~~G~i~fsnvtF~Y~p~--k~vl~disF~v~pGkt 566 (790)
T KOG0056|consen 512 MFDLLKEEPEVVDLPGAPPLKVTQGKIEFSNVTFAYDPG--KPVLSDISFTVQPGKT 566 (790)
T ss_pred HHHHhhcCchhhcCCCCCCccccCCeEEEEEeEEecCCC--CceeecceEEecCCcE
Confidence 89999999999874 8999999999999984
No 46
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=4.9e-15 Score=110.19 Aligned_cols=176 Identities=10% Similarity=0.031 Sum_probs=124.6
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHhcCCccccCCCChhhHHHHHHhhHHHHHHHHHHHhHH---------------------
Q psy12536 28 LAVQALGMELRVAGCSLIYRKALRLSKTALGDTTVGQVVNLLSNDVNRFDTACIFLHHL--------------------- 86 (205)
Q Consensus 28 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~g~i~~~~~~d~~~l~~~~~~~~~~--------------------- 86 (205)
.+....++.....+.-..|.|+.++++.|+-++.+|.+...+.....-++.........
T Consensus 4 ~~fs~v~q~a~r~la~~~F~h~~~Lsl~fHl~r~TGglsR~ierGtkgI~~i~~~~l~~i~P~~~Ei~l~~vi~~~~~~~ 83 (497)
T COG5265 4 RLFSPVGQIAVRVLAYVTFFHLHSLSLRFHLERRTGGLSRAIERGTKGIETILRWILFNILPTLVEISLVAVILWRVYGW 83 (497)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHhcchhhhhhcccCceeeHhhcCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHhhccc
Confidence 34556777888889999999999999999999999999988877776665554432111
Q ss_pred HHHHHHHH--------HHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHhhhHHHHHHHHHHHHHHH----HHHH
Q psy12536 87 INRLLGAK--------KMYLGKKTSELRLKTALRTDERVRLMNEIISGIQVIKMYAWERSFASMVRNARKKE----IQQI 154 (205)
Q Consensus 87 ~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~----~~~~ 154 (205)
|.+.+.++ .....----...++..++.++.+....|++-+..++|.|+.|+.+..++++..+.. .+..
T Consensus 84 ~f~~~t~vtv~lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k~~ 163 (497)
T COG5265 84 WFALTTLVTVILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIKVH 163 (497)
T ss_pred HHHHHHHHHHHHHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHHHHH
Confidence 11111110 11111112234566777888889999999999999999999999888876665544 4444
Q ss_pred HHHHHHHHHHHHHHHhhcc-------------------------------------------------------------
Q psy12536 155 RGSTYIKGVLLSFIIFHTR------------------------------------------------------------- 173 (205)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~------------------------------------------------------------- 173 (205)
....+++..+..+......
T Consensus 164 ~Sl~~Ln~gQ~~I~~~~l~~~m~~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl~~~ 243 (497)
T COG5265 164 VSLLVLNFGQTAIFSTGLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLDVE 243 (497)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhhcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhhccc
Confidence 4455555555444333222
Q ss_pred ------------------eEEEEeceEEecCCCCCCccccceeeecCCCC
Q psy12536 174 ------------------SIFIKNIKAKWLPDQPDYTLNDITLDVKNAES 205 (205)
Q Consensus 174 ------------------~I~~~~vsF~Y~~~~~~~vL~~i~l~i~~G~~ 205 (205)
.|.|+||+|+|.++ +|+|+|+||++|+|++
T Consensus 244 ~~v~d~pda~~L~~~~~g~v~F~~V~F~y~~~--r~iL~~isf~i~~g~t 291 (497)
T COG5265 244 AEVSDAPDAPPLWPVRLGAVAFINVSFAYDPR--RPILNGISFTIPLGKT 291 (497)
T ss_pred hhhccCCCCccccccccceEEEEEEEeecccc--chhhcCccccccCccE
Confidence 69999999999884 8999999999999985
No 47
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.57 E-value=2.1e-12 Score=98.49 Aligned_cols=197 Identities=11% Similarity=0.039 Sum_probs=142.5
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCccccCCCChhhHHHHHHhhHHHHHHHHHH
Q psy12536 3 LTAPTACWALVALIVVDLLIDHQYDLAVQALGMELRVAGCSLIYRKALRLSKTALGDTTVGQVVNLLSNDVNRFDTACIF 82 (205)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~g~i~~~~~~d~~~l~~~~~~ 82 (205)
.|++.+.++..+++++.+++..+......+++.++...+...+|....+.|............ .+|.+++..++..
T Consensus 60 ~TLv~Ltvlal~ly~~~glLd~iR~~~l~Rig~~lD~~L~~~v~~a~~~~~l~~~~~g~~~Q~----LrDL~qvR~Fltg 135 (580)
T COG4618 60 PTLVMLTVLALGLYAFQGLLDAIRSRVLVRIGERLDRQLNGPVFAASFSAPLLRRGSGDGLQP----LRDLDQVRQFLTG 135 (580)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHhhcCCCccccc----hhhHHHHHHHHcC
Confidence 345667777788889999999999999999999999999999999988776554333322222 3488888887743
Q ss_pred HhH--H---------------------HHHHHHHH-----HHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHhh
Q psy12536 83 LHH--L---------------------INRLLGAK-----KMYLGKKTSELRLKTALRTDERVRLMNEIISGIQVIKMYA 134 (205)
Q Consensus 83 ~~~--~---------------------~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~ 134 (205)
... + ++++++.+ ...-....++-.++..+...+.+..+.....+.++|++.|
T Consensus 136 ~g~~A~fDaPW~P~yl~v~fl~Hp~lG~~a~~ga~iLv~la~ln~~~t~~p~~eA~~~~~~~~~~~~a~~RNAEvi~AMG 215 (580)
T COG4618 136 TGLTAFFDAPWMPLYLAVIFLFHPWLGLIALAGAIILVVLALLNERATRKPLKEASEASIRANQLADATLRNAEVIEAMG 215 (580)
T ss_pred CCcchhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhhhHHHHHHhc
Confidence 111 1 11111111 4444555666667777788888999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh------------cc-----------------------------
Q psy12536 135 WERSFASMVRNARKKEIQQIRGSTYIKGVLLSFIIFH------------TR----------------------------- 173 (205)
Q Consensus 135 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~----------------------------- 173 (205)
..+...++|.+........+...+-.+.....++-.+ .+
T Consensus 216 M~~~l~~rW~~~~~~~L~~~~~asd~~~~~~~~Sr~~Rm~lQs~iLg~GA~Lvi~ge~t~G~mIA~SIl~gRaLaPid~a 295 (580)
T COG4618 216 MLGNLAKRWGRFNAAYLSAQERASDRNGAFGALSRALRMALQSAVLGLGAWLVIKGEITPGMMIAGSILSGRALAPIDLA 295 (580)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcceeeEEcCcCCcchhhHHHHHhhhhhccHHHH
Confidence 9999999988887776666555443333333322221 11
Q ss_pred --------------------------------------eEEEEeceEEecCCCCCCccccceeeecCCC
Q psy12536 174 --------------------------------------SIFIKNIKAKWLPDQPDYTLNDITLDVKNAE 204 (205)
Q Consensus 174 --------------------------------------~I~~~~vsF~Y~~~~~~~vL~~i~l~i~~G~ 204 (205)
.+.+|++++.-|+. ++|+|+|+||+++|||
T Consensus 296 I~~Wkq~~~Ar~s~~Rl~~lL~~~p~~~~~m~LP~P~g~L~Ve~l~~~PPg~-~~pil~~isF~l~~G~ 363 (580)
T COG4618 296 IANWKQFVAARQSYKRLNELLAELPAAAERMPLPAPQGALSVERLTAAPPGQ-KKPILKGISFALQAGE 363 (580)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCccccCCCCCCCCCceeeEeeeeecCCCC-CCcceecceeEecCCc
Confidence 89999999987777 7899999999999997
No 48
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.51 E-value=2.8e-12 Score=95.27 Aligned_cols=113 Identities=14% Similarity=0.080 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCccccCCCChhhHHHHHHhhHHHHHHHHHHHhHH----------------
Q psy12536 23 DHQYDLAVQALGMELRVAGCSLIYRKALRLSKTALGDTTVGQVVNLLSNDVNRFDTACIFLHHL---------------- 86 (205)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~g~i~~~~~~d~~~l~~~~~~~~~~---------------- 86 (205)
+.........+++++..++|.++.+|++..|+..+++-+++.++..++.|+..+...+..++..
T Consensus 65 s~is~lg~t~~gq~~I~klr~~~~~kil~tplerier~~~~rlla~L~~Dvr~ISf~~s~lp~~~qa~il~l~s~aYLay 144 (546)
T COG4615 65 SLISQLGLTTLGQHFIYKLRSEFIKKILDTPLERIERLGSARLLAGLTSDVRNISFAFSRLPELVQAIILTLGSAAYLAY 144 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhcccchhhhhcccccceeehHhhhHHHHHHHHHHHHHHHHHHH
Confidence 3344556667788889999999999999999999999999999999999998876443322211
Q ss_pred ------HHHHH----HHH-HHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHhhh
Q psy12536 87 ------INRLL----GAK-KMYLGKKTSELRLKTALRTDERVRLMNEIISGIQVIKMYAW 135 (205)
Q Consensus 87 ------~~~~~----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~ 135 (205)
...++ ++. ..+...+..+.....++..++..+.-+..+.|.|+++...-
T Consensus 145 LSp~mf~l~vV~ivv~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~ 204 (546)
T COG4615 145 LSPKMFLLTVVWIVVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRE 204 (546)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechH
Confidence 00000 111 55666677777788888899999999999999999998863
No 49
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=98.64 E-value=3.4e-05 Score=61.85 Aligned_cols=142 Identities=10% Similarity=0.039 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCccccCCCCh-----hhHHHHHHhhHHHHHHHHH
Q psy12536 7 TACWALVALIVVDLLIDHQYDLAVQALGMELRVAGCSLIYRKALRLSKTALGDTTV-----GQVVNLLSNDVNRFDTACI 81 (205)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~-----g~i~~~~~~d~~~l~~~~~ 81 (205)
..+.++.+...+..+......|+..++..+.+.-+...+.++.+...-.|+..... -..=+|+..|+..+.+...
T Consensus 87 ~~l~~f~~ia~~~v~~~v~~~~L~~~l~~~wR~wLt~~l~~~wl~~~~~y~l~~~~~~~~~dNpDQRi~eDi~~~t~~t~ 166 (604)
T COG4178 87 QQLQVFAIIAGLLVLLNVAQTWLNQMLRLRWREWLTKDLLDRWLDPRRYYRLAQAGGIGLIDNPDQRIQEDIRNFTETTL 166 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHhcccccCCCChHHhHHHHHHHHHhhHH
Confidence 34444455555555666678899999999999999999999988877444333322 1223578888766544432
Q ss_pred HHhH-H-------------------------------------HHHH--HHHH---HHHHHHHHHHHHHHHhHhHHHHHH
Q psy12536 82 FLHH-L-------------------------------------INRL--LGAK---KMYLGKKTSELRLKTALRTDERVR 118 (205)
Q Consensus 82 ~~~~-~-------------------------------------~~~~--~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 118 (205)
.+.. + +.++ +++. ...++|...+++.++.+..++.-.
T Consensus 167 ~l~~g~l~s~islisF~~iLw~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~Li~LN~~~~~~EA~fR~ 246 (604)
T COG4178 167 DLSFGLLQSVISLISFTGILWSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQKLEADFRY 246 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCcceEeecccccccchHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHH
Confidence 2111 0 0000 0011 557888888888888888888888
Q ss_pred HHHHHHhhhHHHHHhhhHHHHHHHHHHHHH
Q psy12536 119 LMNEIISGIQVIKMYAWERSFASMVRNARK 148 (205)
Q Consensus 119 ~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~ 148 (205)
.+.-.-.+...|-.|+.|+...++.++...
T Consensus 247 ~Lvrv~enaE~IAly~GE~~Er~~l~~~f~ 276 (604)
T COG4178 247 SLVRVRENAEAIALYRGEKVERRRLDDRFD 276 (604)
T ss_pred HHHHHHhhHHHHHHhcCcHHHHHHHHHHHH
Confidence 888888899999999988775555444333
No 50
>KOG0060|consensus
Probab=98.44 E-value=6.5e-05 Score=59.40 Aligned_cols=125 Identities=14% Similarity=0.053 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCccccCCCChh-h---HHHHHHhhHHHHHHHHHHHhHH--
Q psy12536 13 VALIVVDLLIDHQYDLAVQALGMELRVAGCSLIYRKALRLSKTALGDTTVG-Q---VVNLLSNDVNRFDTACIFLHHL-- 86 (205)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~g-~---i~~~~~~d~~~l~~~~~~~~~~-- 86 (205)
++.......+.....+....+..+.+.++..-++++..+-- .||.=.+.+ . -=.+++.|++........+...
T Consensus 129 ~~~~~~~s~~~a~~ky~~~~L~Lr~R~~ltk~lh~~Y~k~~-~yYkis~~d~ridNPDQrltqDv~kf~~~l~sl~s~l~ 207 (659)
T KOG0060|consen 129 VLLIPGISLLNALLKFTTNELYLRFRKNLTKYLHRLYFKGF-TYYKLSNLDDRIDNPDQRLTQDVEKFCRQLSSLYSNLL 207 (659)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHhccc-eEEEecccccccCChHHHHhHHHHHHHHHHHHHHHhhh
Confidence 33334444445555666667777778888777777776643 222222222 2 2358999998876665432221
Q ss_pred ---------------------HHHHHH------HHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHhhhHHH
Q psy12536 87 ---------------------INRLLG------AKKMYLGKKTSELRLKTALRTDERVRLMNEIISGIQVIKMYAWERS 138 (205)
Q Consensus 87 ---------------------~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~ 138 (205)
+..+.+ ++...+.+-+.+...++.+...+.--.-.+...+.+.|-.|+.++.
T Consensus 208 ~a~~di~~Y~~~l~~s~g~~gp~~i~~Yf~~~~vi~~~L~~pI~~l~~~qeklEGdfRy~h~rlr~NaE~iAFY~g~~~ 286 (659)
T KOG0060|consen 208 KAPFDLVYYTFRLFESAGWLGPVSIFAYFLIGTVINKTLRGPIVKLTVEQEKLEGDFRYKHSRLRVNAEEIAFYRGGQV 286 (659)
T ss_pred ccceeeehhhhHHhhhcCcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHhhcchhhheeeeeecchhhhhhccCch
Confidence 111111 1133444444444444444444443344556667778888876544
No 51
>PF06472 ABC_membrane_2: ABC transporter transmembrane region 2; InterPro: IPR010509 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This region covers the N terminus and first two membrane regions of a small family of ABC transporters. Mutations in this domain in P28288 from SWISSPROT are believed responsible for Zellweger Syndrome-2 []; mutations in P33897 from SWISSPROT are responsible for recessive X-linked adrenoleukodystrophy []. A Saccharomyces cerevisiae protein containing this domain is involved in the import of long-chain fatty acids [].; GO: 0006810 transport, 0016020 membrane
Probab=98.16 E-value=0.0014 Score=48.62 Aligned_cols=142 Identities=12% Similarity=0.082 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCccccCCC-C---hhhHHHHHHhhHHHHHHHHHH
Q psy12536 7 TACWALVALIVVDLLIDHQYDLAVQALGMELRVAGCSLIYRKALRLSKTALGDT-T---VGQVVNLLSNDVNRFDTACIF 82 (205)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~-~---~g~i~~~~~~d~~~l~~~~~~ 82 (205)
..++..+++.+...++.....+....++.+.+..+.+.+.++.++-. .||.-. . ..+.=.|++.|++.+......
T Consensus 67 ~~l~~~~~l~~~~~~l~~~~~yl~~~L~l~wR~~Lt~~~~~~yl~~~-~yY~l~~~~~~idNpDQRIteDi~~f~~~~~~ 145 (281)
T PF06472_consen 67 RLLLLFLLLAIASALLNSILKYLRQRLALRWREWLTRHLHDRYLSNR-TYYRLNNLDGRIDNPDQRITEDIRKFTESSLS 145 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc-hhHhhhccccccccHhhHHHHHHHHHHHHHHH
Confidence 34445556666677777788888999999999999999999998877 555422 2 335557999999988765443
Q ss_pred HhH-H----------------------H-HHH-----HHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHh
Q psy12536 83 LHH-L----------------------I-NRL-----LGAKKMYLGKKTSELRLKTALRTDERVRLMNEIISGIQVIKMY 133 (205)
Q Consensus 83 ~~~-~----------------------~-~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~ 133 (205)
+.. + + .++ ...+...+++...+...++.+..++.-........+-+.|-.+
T Consensus 146 l~~~~~~~~~~l~~f~~~L~~~~g~~~~~~~~~y~~~~t~~~~~ig~~l~~l~~~~q~~Ea~fR~~l~r~r~naE~IA~~ 225 (281)
T PF06472_consen 146 LFLGLLKPILDLISFSVILWSISGWLGPWAALIYAILGTLITHWIGPPLGRLNAEQQRLEADFRYALVRLRENAESIAFY 225 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhchHHHHHHHHHHhHHHHHhc
Confidence 221 1 0 110 0111888899999999999988888888888899999999999
Q ss_pred hhHHHHHHHHHHHHHH
Q psy12536 134 AWERSFASMVRNARKK 149 (205)
Q Consensus 134 ~~e~~~~~~~~~~~~~ 149 (205)
+.|+...++.++..++
T Consensus 226 ~Ge~~E~~~l~~~f~~ 241 (281)
T PF06472_consen 226 RGESRERRRLDRRFDA 241 (281)
T ss_pred CCcHHHHHHHHHHHHH
Confidence 9988766665555444
No 52
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.39 E-value=0.00014 Score=54.96 Aligned_cols=31 Identities=23% Similarity=0.379 Sum_probs=27.6
Q ss_pred eEEEEeceEEecCCCCCCccccceeeecCCCC
Q psy12536 174 SIFIKNIKAKWLPDQPDYTLNDITLDVKNAES 205 (205)
Q Consensus 174 ~I~~~~vsF~Y~~~~~~~vL~~i~l~i~~G~~ 205 (205)
.|+++|++|+|++. .+++|+|+||+|++||+
T Consensus 80 ~i~~~nls~~y~~~-~~~~L~~is~~I~~Ge~ 110 (329)
T PRK14257 80 VFEIRNFNFWYMNR-TKHVLHDLNLDIKRNKV 110 (329)
T ss_pred eEEEEeeEEEecCC-CceeeeeeEEEEcCCCE
Confidence 69999999999754 46899999999999984
No 53
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=96.47 E-value=0.0021 Score=48.93 Aligned_cols=29 Identities=14% Similarity=0.274 Sum_probs=26.0
Q ss_pred eEEEEeceEEecCCCCCCccccceeeecCCCC
Q psy12536 174 SIFIKNIKAKWLPDQPDYTLNDITLDVKNAES 205 (205)
Q Consensus 174 ~I~~~~vsF~Y~~~~~~~vL~~i~l~i~~G~~ 205 (205)
.|+++|++++|++ .++|+|+||+|++||+
T Consensus 41 ~i~i~nl~k~y~~---~~~l~~is~~i~~Gei 69 (340)
T PRK13536 41 AIDLAGVSKSYGD---KAVVNGLSFTVASGEC 69 (340)
T ss_pred eEEEEEEEEEECC---EEEEeeeEEEEcCCCE
Confidence 5999999999974 5799999999999984
No 54
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.44 E-value=0.0022 Score=47.69 Aligned_cols=29 Identities=10% Similarity=0.094 Sum_probs=25.8
Q ss_pred eEEEEeceEEecCCCCCCccccceeeecCCCC
Q psy12536 174 SIFIKNIKAKWLPDQPDYTLNDITLDVKNAES 205 (205)
Q Consensus 174 ~I~~~~vsF~Y~~~~~~~vL~~i~l~i~~G~~ 205 (205)
.|+++||+++|++ .++|+|+||+|++||.
T Consensus 39 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~ 67 (286)
T PRK14275 39 HVVAKNFSIYYGE---FEAVKKVNADILSKYV 67 (286)
T ss_pred EEEEeeeEEEECC---EEEEeeeEEEEcCCCE
Confidence 5899999999974 4699999999999984
No 55
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.43 E-value=0.0024 Score=47.48 Aligned_cols=29 Identities=14% Similarity=0.358 Sum_probs=25.7
Q ss_pred eEEEEeceEEecCCCCCCccccceeeecCCCC
Q psy12536 174 SIFIKNIKAKWLPDQPDYTLNDITLDVKNAES 205 (205)
Q Consensus 174 ~I~~~~vsF~Y~~~~~~~vL~~i~l~i~~G~~ 205 (205)
.|+++||+++|++ +++|+|+||+|++||.
T Consensus 39 ~l~i~~l~~~~~~---~~il~~is~~i~~Ge~ 67 (285)
T PRK14254 39 VIEARDLNVFYGD---EQALDDVSMDIPENQV 67 (285)
T ss_pred eEEEEEEEEEECC---EeeEeeeEEEEcCCCE
Confidence 4899999999974 4799999999999984
No 56
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=96.35 E-value=0.0028 Score=48.88 Aligned_cols=30 Identities=10% Similarity=0.315 Sum_probs=27.1
Q ss_pred eEEEEeceEEecCCCCCCccc-----------cceeeecCCCC
Q psy12536 174 SIFIKNIKAKWLPDQPDYTLN-----------DITLDVKNAES 205 (205)
Q Consensus 174 ~I~~~~vsF~Y~~~~~~~vL~-----------~i~l~i~~G~~ 205 (205)
.++|+||+|.||++ +++|+ |+++.|.+||+
T Consensus 130 ri~Fe~LTf~YP~e--r~~Le~~~~~~~~R~id~~~pig~Gq~ 170 (415)
T TIGR00767 130 RVLFENLTPLYPNE--RLRLETSTEDLSTRVLDLFAPIGKGQR 170 (415)
T ss_pred CeEEEEeeecCCCc--cceeecCccccceeeeeeEEEeCCCCE
Confidence 79999999999985 68997 99999999984
No 57
>KOG0064|consensus
Probab=96.32 E-value=0.43 Score=38.50 Aligned_cols=122 Identities=18% Similarity=0.138 Sum_probs=66.7
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHhcCCccccCCCCh-hhH---HHHHHhhHHHHHHHHHHHhHH---------------
Q psy12536 26 YDLAVQALGMELRVAGCSLIYRKALRLSKTALGDTTV-GQV---VNLLSNDVNRFDTACIFLHHL--------------- 86 (205)
Q Consensus 26 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~-g~i---~~~~~~d~~~l~~~~~~~~~~--------------- 86 (205)
-.++..+++-.++.++..-.++..++.. .||.-.+. |.+ =+.++.|+..+.+....+...
T Consensus 177 Iryle~klaLafrtrL~~h~y~~Y~snq-TyY~Vsn~d~~i~n~D~sLTeDI~~Fs~svahLysnLtKP~lDl~l~s~~L 255 (728)
T KOG0064|consen 177 IRYLESKLALAFRTRLTRHAYDMYLSNQ-TFYKVSNLDSVIENADNSLTEDIAKFSDSVAHLYSNLTKPVLDLILISFTL 255 (728)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccC-ceEEEecccchhcCccchhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 3445555666666777766677666655 44332211 222 245788887766554432111
Q ss_pred ----------HHHHHHHH-------HHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHhhhHHHHHHHHHHHHH
Q psy12536 87 ----------INRLLGAK-------KMYLGKKTSELRLKTALRTDERVRLMNEIISGIQVIKMYAWERSFASMVRNARK 148 (205)
Q Consensus 87 ----------~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~ 148 (205)
.+.+.+++ .+.+.++..+...+........-..=+..+.+-.+|-.|+.++...++.++...
T Consensus 256 ~~s~~s~g~~~~~~~~lvv~lTa~iLr~~sP~Fg~Lv~eeA~r~g~lr~~Hs~ii~NsEEIAfy~GhkvE~~ql~~sy~ 334 (728)
T KOG0064|consen 256 LDSATSVGAAGITLAGLVVYLTAFILRAVSPKFGKLVAEEAARKGYLRYLHSNIITNSEEIAFYGGHKVELTQVDESYN 334 (728)
T ss_pred HhhhccccccchhhhhhHHHHHHHHHHHhCCchhhHHHHHHhhccHHHHHHHHHhccHHHHHhhcccHHHHHHHHHHHH
Confidence 00111111 444555555555555555555555666778889999999987765555544433
No 58
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.19 E-value=0.0042 Score=46.67 Aligned_cols=29 Identities=10% Similarity=0.337 Sum_probs=26.0
Q ss_pred eEEEEeceEEecCCCCCCccccceeeecCCCC
Q psy12536 174 SIFIKNIKAKWLPDQPDYTLNDITLDVKNAES 205 (205)
Q Consensus 174 ~I~~~~vsF~Y~~~~~~~vL~~i~l~i~~G~~ 205 (205)
.|+++||+++|++ +++|+|+||+|++||+
T Consensus 45 ~l~i~nl~~~~~~---~~iL~~is~~i~~Ge~ 73 (305)
T PRK14264 45 KLSVEDLDVYYGD---DHALKGVSMDIPEKSV 73 (305)
T ss_pred eEEEEEEEEEeCC---eeeeeeeEEEEcCCCE
Confidence 5899999999975 5799999999999984
No 59
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=95.88 E-value=0.0054 Score=49.44 Aligned_cols=32 Identities=13% Similarity=0.178 Sum_probs=26.5
Q ss_pred eEEEEeceEEecCCCCCCccccceeeecCCCC
Q psy12536 174 SIFIKNIKAKWLPDQPDYTLNDITLDVKNAES 205 (205)
Q Consensus 174 ~I~~~~vsF~Y~~~~~~~vL~~i~l~i~~G~~ 205 (205)
.|+++|++++|+..++.++|+|+||+|++||+
T Consensus 259 ~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~ 290 (506)
T PRK13549 259 ILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEI 290 (506)
T ss_pred eEEEecCccccccccccccccceeeEEcCCcE
Confidence 49999999999632135799999999999984
No 60
>PLN03073 ABC transporter F family; Provisional
Probab=95.61 E-value=0.011 Score=49.70 Aligned_cols=30 Identities=3% Similarity=0.087 Sum_probs=26.4
Q ss_pred eEEEEeceEEecCCCCCCccccceeeecCCCC
Q psy12536 174 SIFIKNIKAKWLPDQPDYTLNDITLDVKNAES 205 (205)
Q Consensus 174 ~I~~~~vsF~Y~~~~~~~vL~~i~l~i~~G~~ 205 (205)
-|+++||+|+|+++ +++|+|+||+|++|++
T Consensus 508 ~L~~~~ls~~y~~~--~~il~~vsl~i~~Ge~ 537 (718)
T PLN03073 508 IISFSDASFGYPGG--PLLFKNLNFGIDLDSR 537 (718)
T ss_pred eEEEEeeEEEeCCC--CeeEeccEEEEcCCCE
Confidence 59999999999753 5799999999999984
No 61
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=95.59 E-value=0.01 Score=48.08 Aligned_cols=32 Identities=19% Similarity=0.429 Sum_probs=26.5
Q ss_pred eEEEEeceEEecC--CCCCCccccceeeecCCCC
Q psy12536 174 SIFIKNIKAKWLP--DQPDYTLNDITLDVKNAES 205 (205)
Q Consensus 174 ~I~~~~vsF~Y~~--~~~~~vL~~i~l~i~~G~~ 205 (205)
-|+++||+++|++ ..++++|+|+||+|++||+
T Consensus 279 ~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~ 312 (520)
T TIGR03269 279 IIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEI 312 (520)
T ss_pred eEEEeccEEEeccCCCCCceEEeeEEEEEcCCCE
Confidence 4999999999963 1135799999999999984
No 62
>PLN03073 ABC transporter F family; Provisional
Probab=95.52 E-value=0.011 Score=49.64 Aligned_cols=29 Identities=10% Similarity=0.072 Sum_probs=26.2
Q ss_pred eEEEEeceEEecCCCCCCccccceeeecCCCC
Q psy12536 174 SIFIKNIKAKWLPDQPDYTLNDITLDVKNAES 205 (205)
Q Consensus 174 ~I~~~~vsF~Y~~~~~~~vL~~i~l~i~~G~~ 205 (205)
.|+++|++|+|++ +++|+|+||+|++|++
T Consensus 177 ~I~i~nls~~y~~---~~ll~~isl~i~~Ge~ 205 (718)
T PLN03073 177 DIHMENFSISVGG---RDLIVDASVTLAFGRH 205 (718)
T ss_pred eEEEceEEEEeCC---CEEEECCEEEECCCCE
Confidence 7999999999974 4699999999999984
No 63
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=95.47 E-value=0.013 Score=47.57 Aligned_cols=29 Identities=10% Similarity=0.218 Sum_probs=25.9
Q ss_pred eEEEEeceEEecCCCCCCccccceeeecCCCC
Q psy12536 174 SIFIKNIKAKWLPDQPDYTLNDITLDVKNAES 205 (205)
Q Consensus 174 ~I~~~~vsF~Y~~~~~~~vL~~i~l~i~~G~~ 205 (205)
.|+++|++++|++ +++|+|+||+|++||+
T Consensus 319 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~ 347 (530)
T PRK15064 319 ALEVENLTKGFDN---GPLFKNLNLLLEAGER 347 (530)
T ss_pred eEEEEeeEEeeCC---ceeecCcEEEECCCCE
Confidence 5999999999974 4799999999999984
No 64
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=95.35 E-value=0.012 Score=47.21 Aligned_cols=29 Identities=17% Similarity=0.241 Sum_probs=25.9
Q ss_pred eEEEEeceEEecCCCCCCccccceeeecCCCC
Q psy12536 174 SIFIKNIKAKWLPDQPDYTLNDITLDVKNAES 205 (205)
Q Consensus 174 ~I~~~~vsF~Y~~~~~~~vL~~i~l~i~~G~~ 205 (205)
.|+++|++++|++ +++|+|+||+|++||+
T Consensus 260 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~ 288 (490)
T PRK10938 260 RIVLNNGVVSYND---RPILHNLSWQVNPGEH 288 (490)
T ss_pred eEEEeceEEEECC---eeEEeeceEEEcCCCE
Confidence 5999999999974 4699999999999984
No 65
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=95.13 E-value=0.014 Score=47.00 Aligned_cols=32 Identities=9% Similarity=0.189 Sum_probs=26.3
Q ss_pred eEEEEeceEEecCCCCCCccccceeeecCCCC
Q psy12536 174 SIFIKNIKAKWLPDQPDYTLNDITLDVKNAES 205 (205)
Q Consensus 174 ~I~~~~vsF~Y~~~~~~~vL~~i~l~i~~G~~ 205 (205)
-|+++|++++|+++++.++|+|+||+|++||+
T Consensus 257 ~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~ 288 (500)
T TIGR02633 257 ILEARNLTCWDVINPHRKRVDDVSFSLRRGEI 288 (500)
T ss_pred eEEEeCCcccccccccccccccceeEEeCCcE
Confidence 49999999999532135799999999999984
No 66
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=95.01 E-value=0.02 Score=46.74 Aligned_cols=29 Identities=10% Similarity=0.198 Sum_probs=25.9
Q ss_pred eEEEEeceEEecCCCCCCccccceeeecCCCC
Q psy12536 174 SIFIKNIKAKWLPDQPDYTLNDITLDVKNAES 205 (205)
Q Consensus 174 ~I~~~~vsF~Y~~~~~~~vL~~i~l~i~~G~~ 205 (205)
.|+++|++++|++ +++|+|+||+|++||+
T Consensus 322 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~ 350 (552)
T TIGR03719 322 VIEAENLSKGFGD---KLLIDDLSFKLPPGGI 350 (552)
T ss_pred EEEEeeEEEEECC---eeeeccceEEEcCCCE
Confidence 5999999999974 5799999999999984
No 67
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=94.99 E-value=0.014 Score=47.30 Aligned_cols=32 Identities=6% Similarity=0.272 Sum_probs=26.3
Q ss_pred eEEEEeceEEecCC--------CCCCccccceeeecCCCC
Q psy12536 174 SIFIKNIKAKWLPD--------QPDYTLNDITLDVKNAES 205 (205)
Q Consensus 174 ~I~~~~vsF~Y~~~--------~~~~vL~~i~l~i~~G~~ 205 (205)
-|+++|++++|+.. .++++|+|+||+|++||+
T Consensus 275 ~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~ 314 (529)
T PRK15134 275 LLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGET 314 (529)
T ss_pred cccccCcEEEeecCccccccccccceeeecceeEEcCCCE
Confidence 48999999999631 035799999999999984
No 68
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=94.98 E-value=0.34 Score=39.38 Aligned_cols=30 Identities=10% Similarity=0.279 Sum_probs=27.4
Q ss_pred eEEEEeceEEecCCCCCCccccceeeecCCCC
Q psy12536 174 SIFIKNIKAKWLPDQPDYTLNDITLDVKNAES 205 (205)
Q Consensus 174 ~I~~~~vsF~Y~~~~~~~vL~~i~l~i~~G~~ 205 (205)
-++++|++++|+++ +++++|+||.|++|++
T Consensus 321 vl~~~~~~~~y~~~--~~l~~~~s~~i~~g~r 350 (530)
T COG0488 321 VLEFENVSKGYDGG--RLLLKDLSFRIDRGDR 350 (530)
T ss_pred eEEEeccccccCCC--ceeecCceEEecCCCE
Confidence 79999999999874 7899999999999985
No 69
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=94.94 E-value=0.021 Score=46.70 Aligned_cols=29 Identities=10% Similarity=0.203 Sum_probs=26.0
Q ss_pred eEEEEeceEEecCCCCCCccccceeeecCCCC
Q psy12536 174 SIFIKNIKAKWLPDQPDYTLNDITLDVKNAES 205 (205)
Q Consensus 174 ~I~~~~vsF~Y~~~~~~~vL~~i~l~i~~G~~ 205 (205)
.|+++||+++|++ +++|+|+||+|++||+
T Consensus 324 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~ 352 (556)
T PRK11819 324 VIEAENLSKSFGD---RLLIDDLSFSLPPGGI 352 (556)
T ss_pred EEEEEeEEEEECC---eeeecceeEEEcCCCE
Confidence 5999999999974 4799999999999984
No 70
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=94.88 E-value=0.022 Score=47.36 Aligned_cols=29 Identities=14% Similarity=0.237 Sum_probs=26.0
Q ss_pred eEEEEeceEEecCCCCCCccccceeeecCCCC
Q psy12536 174 SIFIKNIKAKWLPDQPDYTLNDITLDVKNAES 205 (205)
Q Consensus 174 ~I~~~~vsF~Y~~~~~~~vL~~i~l~i~~G~~ 205 (205)
.|+++||+++|++ +++|+|+||+|++|++
T Consensus 312 ~l~~~~l~~~y~~---~~il~~isl~i~~Ge~ 340 (638)
T PRK10636 312 LLKMEKVSAGYGD---RIILDSIKLNLVPGSR 340 (638)
T ss_pred eEEEEeeEEEeCC---eeeeccceEEECCCCE
Confidence 5999999999974 5799999999999984
No 71
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=94.78 E-value=0.023 Score=47.18 Aligned_cols=29 Identities=10% Similarity=0.173 Sum_probs=25.9
Q ss_pred eEEEEeceEEecCCCCCCccccceeeecCCCC
Q psy12536 174 SIFIKNIKAKWLPDQPDYTLNDITLDVKNAES 205 (205)
Q Consensus 174 ~I~~~~vsF~Y~~~~~~~vL~~i~l~i~~G~~ 205 (205)
-|+++||+++|++ +++|+|+||+|++|++
T Consensus 319 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~ 347 (635)
T PRK11147 319 VFEMENVNYQIDG---KQLVKDFSAQVQRGDK 347 (635)
T ss_pred eEEEeeeEEEECC---eEEEcCcEEEEcCCCE
Confidence 5999999999974 5799999999999984
No 72
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=94.65 E-value=0.029 Score=46.56 Aligned_cols=32 Identities=9% Similarity=0.250 Sum_probs=26.1
Q ss_pred eEEEEeceEEecCCC--------CCCccccceeeecCCCC
Q psy12536 174 SIFIKNIKAKWLPDQ--------PDYTLNDITLDVKNAES 205 (205)
Q Consensus 174 ~I~~~~vsF~Y~~~~--------~~~vL~~i~l~i~~G~~ 205 (205)
-++++||+++|+.+. ..++|+|+||+|++||+
T Consensus 313 ~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~ 352 (623)
T PRK10261 313 ILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGET 352 (623)
T ss_pred eEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCE
Confidence 499999999997320 24699999999999984
No 73
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=93.67 E-value=0.066 Score=39.80 Aligned_cols=27 Identities=22% Similarity=0.390 Sum_probs=23.5
Q ss_pred eEEEEeceEEecCCCCCCccccceeeecCCCC
Q psy12536 174 SIFIKNIKAKWLPDQPDYTLNDITLDVKNAES 205 (205)
Q Consensus 174 ~I~~~~vsF~Y~~~~~~~vL~~i~l~i~~G~~ 205 (205)
.|+++|+++. . +++|+|+||+|++||+
T Consensus 39 ~l~i~nls~~--~---~~vL~~vs~~i~~Ge~ 65 (282)
T cd03291 39 NLFFSNLCLV--G---APVLKNINLKIEKGEM 65 (282)
T ss_pred eEEEEEEEEe--c---ccceeeeeEEEcCCCE
Confidence 6999999985 2 5799999999999984
No 74
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=93.14 E-value=0.072 Score=48.34 Aligned_cols=32 Identities=16% Similarity=0.058 Sum_probs=26.3
Q ss_pred eEEEEeceEEecCCC-CCCccccceeeecCCCC
Q psy12536 174 SIFIKNIKAKWLPDQ-PDYTLNDITLDVKNAES 205 (205)
Q Consensus 174 ~I~~~~vsF~Y~~~~-~~~vL~~i~l~i~~G~~ 205 (205)
.++++||++.|+.++ ++++|+|+|++++|||+
T Consensus 759 ~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~ 791 (1394)
T TIGR00956 759 IFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTL 791 (1394)
T ss_pred eEEEEeeEEEecCCCCCcEeeeCCEEEEECCEE
Confidence 378999999996321 46799999999999984
No 75
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=92.92 E-value=0.092 Score=49.32 Aligned_cols=31 Identities=6% Similarity=0.208 Sum_probs=27.1
Q ss_pred eEEEEeceEEecCCCCCCccccceeeecCCCC
Q psy12536 174 SIFIKNIKAKWLPDQPDYTLNDITLDVKNAES 205 (205)
Q Consensus 174 ~I~~~~vsF~Y~~~~~~~vL~~i~l~i~~G~~ 205 (205)
.|+++|++++|++. ++++|+|+||+|++||.
T Consensus 1937 ~L~v~nLsK~Y~~~-~~~aL~~ISf~I~~GEi 1967 (2272)
T TIGR01257 1937 ILRLNELTKVYSGT-SSPAVDRLCVGVRPGEC 1967 (2272)
T ss_pred eEEEEEEEEEECCC-CceEEEeeEEEEcCCcE
Confidence 59999999999753 36899999999999984
No 76
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=92.05 E-value=0.14 Score=48.16 Aligned_cols=31 Identities=10% Similarity=0.262 Sum_probs=27.2
Q ss_pred eEEEEeceEEecCCCCCCccccceeeecCCCC
Q psy12536 174 SIFIKNIKAKWLPDQPDYTLNDITLDVKNAES 205 (205)
Q Consensus 174 ~I~~~~vsF~Y~~~~~~~vL~~i~l~i~~G~~ 205 (205)
.|+++|++++|+++ ++++|+|+||++++||.
T Consensus 928 ~L~I~nLsK~y~~~-~k~aL~~lsl~I~~Gei 958 (2272)
T TIGR01257 928 GVCVKNLVKIFEPS-GRPAVDRLNITFYENQI 958 (2272)
T ss_pred eEEEEeEEEEecCC-CceEEEeeEEEEcCCcE
Confidence 69999999999743 46899999999999984
No 77
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=91.71 E-value=0.16 Score=40.96 Aligned_cols=31 Identities=13% Similarity=0.428 Sum_probs=25.6
Q ss_pred EEEEeceEEecCC--------CCCCccccceeeecCCCC
Q psy12536 175 IFIKNIKAKWLPD--------QPDYTLNDITLDVKNAES 205 (205)
Q Consensus 175 I~~~~vsF~Y~~~--------~~~~vL~~i~l~i~~G~~ 205 (205)
++++|++.+|... ....+++||||++++||+
T Consensus 281 l~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~ 319 (539)
T COG1123 281 LSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGET 319 (539)
T ss_pred eEeeeeeeeeccccccccccccceeeeeeeeeEecCCCE
Confidence 6799999999852 135679999999999985
No 78
>KOG0927|consensus
Probab=90.65 E-value=1 Score=36.47 Aligned_cols=30 Identities=7% Similarity=0.244 Sum_probs=26.4
Q ss_pred eEEEEeceEEecCCCCCCccccceeeecCCCC
Q psy12536 174 SIFIKNIKAKWLPDQPDYTLNDITLDVKNAES 205 (205)
Q Consensus 174 ~I~~~~vsF~Y~~~~~~~vL~~i~l~i~~G~~ 205 (205)
.|-++||+|+|+++ ..+++++||.|..+++
T Consensus 389 vi~~~nv~F~y~~~--~~iy~~l~fgid~~sr 418 (614)
T KOG0927|consen 389 VIMVQNVSFGYSDN--PMIYKKLNFGIDLDSR 418 (614)
T ss_pred eEEEeccccCCCCc--chhhhhhhcccCcccc
Confidence 79999999999986 4899999999887763
No 79
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=89.91 E-value=0.2 Score=40.38 Aligned_cols=27 Identities=15% Similarity=0.383 Sum_probs=23.6
Q ss_pred eEEEEeceEEecCCCCCCccccceeeecCCCC
Q psy12536 174 SIFIKNIKAKWLPDQPDYTLNDITLDVKNAES 205 (205)
Q Consensus 174 ~I~~~~vsF~Y~~~~~~~vL~~i~l~i~~G~~ 205 (205)
.|+++|++++| +++|+|+||+|++||+
T Consensus 250 ~i~~~~l~~~~-----~~~l~~vsl~i~~Ge~ 276 (491)
T PRK10982 250 ILEVRNLTSLR-----QPSIRDVSFDLHKGEI 276 (491)
T ss_pred EEEEeCccccc-----CcccceeeEEEeCCcE
Confidence 59999999974 3599999999999984
No 80
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=89.36 E-value=0.24 Score=40.19 Aligned_cols=27 Identities=19% Similarity=0.265 Sum_probs=23.3
Q ss_pred eEEEEeceEEecCCCCCCccccceeeecCCCC
Q psy12536 174 SIFIKNIKAKWLPDQPDYTLNDITLDVKNAES 205 (205)
Q Consensus 174 ~I~~~~vsF~Y~~~~~~~vL~~i~l~i~~G~~ 205 (205)
.|+++|+++.|. .+|+|+||+|++||+
T Consensus 265 ~l~~~~l~~~~~-----~~l~~isl~i~~Ge~ 291 (510)
T PRK09700 265 VFEVRNVTSRDR-----KKVRDISFSVCRGEI 291 (510)
T ss_pred EEEEeCccccCC-----CcccceeEEEcCCcE
Confidence 499999998762 389999999999984
No 81
>PRK12369 putative transporter; Reviewed
Probab=86.30 E-value=13 Score=28.47 Aligned_cols=66 Identities=14% Similarity=0.097 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCccccCCCChhhHHHHHHhhHHHHHHH
Q psy12536 8 ACWALVALIVVDLLIDHQYDLAVQALGMELRVAGCSLIYRKALRLSKTALGDTTVGQVVNLLSNDVNRFDTA 79 (205)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~g~i~~~~~~d~~~l~~~ 79 (205)
.+..+.++.++..+......+...+++.+-+.-+.+.+.++-+..+- .. -..-.|++.|+......
T Consensus 65 ~l~~f~~~~~~~v~~~v~~~~~~~~l~i~WR~wLT~~~l~~wl~~~~-~i-----DNPDQRI~EDi~~f~~~ 130 (326)
T PRK12369 65 SILSFLAIAMPYVLIATVVDYFASHYAFRWREAMTFSYLKFWRNKRD-NI-----EGSSQRIQEDTYRFAKI 130 (326)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CC-----CCccHhHHHHHHHHHHH
Confidence 34444455555566666778888889999999999999998887431 11 12236777788665444
No 82
>PLN03140 ABC transporter G family member; Provisional
Probab=85.91 E-value=0.69 Score=42.49 Aligned_cols=32 Identities=6% Similarity=-0.075 Sum_probs=26.2
Q ss_pred eEEEEeceEEecCC----------CCCCccccceeeecCCCC
Q psy12536 174 SIFIKNIKAKWLPD----------QPDYTLNDITLDVKNAES 205 (205)
Q Consensus 174 ~I~~~~vsF~Y~~~----------~~~~vL~~i~l~i~~G~~ 205 (205)
.+.++||+|..+.. .++++|+|+|++++|||+
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel 908 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVL 908 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeE
Confidence 79999999998532 134799999999999974
No 83
>PLN03211 ABC transporter G-25; Provisional
Probab=85.27 E-value=0.34 Score=40.65 Aligned_cols=26 Identities=19% Similarity=0.074 Sum_probs=19.3
Q ss_pred EEeceEEecCCCCCCccccceeeecCCCC
Q psy12536 177 IKNIKAKWLPDQPDYTLNDITLDVKNAES 205 (205)
Q Consensus 177 ~~~vsF~Y~~~~~~~vL~~i~l~i~~G~~ 205 (205)
.+|++.+|+ ++++|+|+|+++++||+
T Consensus 71 ~~~l~~~~~---~~~iL~~vs~~i~~Ge~ 96 (659)
T PLN03211 71 ISDETRQIQ---ERTILNGVTGMASPGEI 96 (659)
T ss_pred cccccccCC---CCeeeeCCEEEEECCEE
Confidence 344555554 35799999999999984
No 84
>PRK13409 putative ATPase RIL; Provisional
Probab=83.84 E-value=0.76 Score=38.07 Aligned_cols=28 Identities=11% Similarity=0.074 Sum_probs=24.2
Q ss_pred eEEEEeceEEecCCCCCCccccceeeecCCCC
Q psy12536 174 SIFIKNIKAKWLPDQPDYTLNDITLDVKNAES 205 (205)
Q Consensus 174 ~I~~~~vsF~Y~~~~~~~vL~~i~l~i~~G~~ 205 (205)
-++++|++++|++ ..|+++||+|++||+
T Consensus 340 ~l~~~~ls~~~~~----~~l~~~s~~i~~Gei 367 (590)
T PRK13409 340 LVEYPDLTKKLGD----FSLEVEGGEIYEGEV 367 (590)
T ss_pred EEEEcceEEEECC----EEEEecceEECCCCE
Confidence 5999999999964 249999999999984
No 85
>KOG0927|consensus
Probab=76.91 E-value=1.9 Score=35.03 Aligned_cols=29 Identities=14% Similarity=0.296 Sum_probs=26.9
Q ss_pred eEEEEeceEEecCCCCCCccccceeeecCCCC
Q psy12536 174 SIFIKNIKAKWLPDQPDYTLNDITLDVKNAES 205 (205)
Q Consensus 174 ~I~~~~vsF~Y~~~~~~~vL~~i~l~i~~G~~ 205 (205)
+|.++|+|+.|++ .+.++|..|++.+|++
T Consensus 75 dvk~~sls~s~~g---~~l~kd~~~El~~g~r 103 (614)
T KOG0927|consen 75 DVKIESLSLSFHG---VELIKDVTLELNRGRR 103 (614)
T ss_pred cceeeeeeeccCC---ceeeeeeeEEecCCce
Confidence 8999999999986 5899999999999985
No 86
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=75.81 E-value=3 Score=33.42 Aligned_cols=30 Identities=13% Similarity=0.272 Sum_probs=24.5
Q ss_pred eEEEEeceEEecCCCCCCccccceeeecCCCC
Q psy12536 174 SIFIKNIKAKWLPDQPDYTLNDITLDVKNAES 205 (205)
Q Consensus 174 ~I~~~~vsF~Y~~~~~~~vL~~i~l~i~~G~~ 205 (205)
-++++|++-. +++ ..+.++|+||++++||+
T Consensus 257 vL~V~~L~v~-~~~-~~~~v~~vs~~Vr~GEI 286 (501)
T COG3845 257 VLEVEDLSVK-DRR-GVTAVKDVSFEVRAGEI 286 (501)
T ss_pred EEEEeeeEee-cCC-CCceeeeeeeEEecCcE
Confidence 7999999855 443 35789999999999985
No 87
>PF02767 DNA_pol3_beta_2: DNA polymerase III beta subunit, central domain; InterPro: IPR022637 This entry describes the central domain of the beta chain of DNA polymerase III. This is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The beta chain is required for initiation of replication from an RNA primer, nucleotide triphosphate (dNTP) residues being added to the 5'-end of the growing DNA chain.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0008408 3'-5' exonuclease activity, 0006260 DNA replication, 0009360 DNA polymerase III complex; PDB: 3T0P_B 3P16_A 3RB9_B 2AWA_C 1VPK_A 2AVT_B 2XUR_B 3Q4K_A 3BEP_A 3D1G_A ....
Probab=73.59 E-value=0.52 Score=29.86 Aligned_cols=27 Identities=19% Similarity=0.297 Sum_probs=20.7
Q ss_pred EeceEEecCCCCCCccccceeeecCCC
Q psy12536 178 KNIKAKWLPDQPDYTLNDITLDVKNAE 204 (205)
Q Consensus 178 ~~vsF~Y~~~~~~~vL~~i~l~i~~G~ 204 (205)
++|.|+-+.++.+|+|+++.|++.+|+
T Consensus 12 ~~v~fa~s~d~~r~~L~Gv~~~~~~~~ 38 (116)
T PF02767_consen 12 KKVAFAASKDESRPILNGVLFEIENNK 38 (116)
T ss_dssp HHHGGGS-SSTTSGGGGEEEEEEETTE
T ss_pred hheeEEEecCCCCceeeeEEEEEECCE
Confidence 456677666557899999999999874
No 88
>KOG0066|consensus
Probab=73.57 E-value=1.5 Score=34.82 Aligned_cols=26 Identities=0% Similarity=0.143 Sum_probs=22.9
Q ss_pred eEEEEeceEEecCCCCCCccccceeeec
Q psy12536 174 SIFIKNIKAKWLPDQPDYTLNDITLDVK 201 (205)
Q Consensus 174 ~I~~~~vsF~Y~~~~~~~vL~~i~l~i~ 201 (205)
.+-+.||+|.||+. +|.+++++|-|.
T Consensus 586 vLGlH~VtFgy~gq--kpLFkkldFGiD 611 (807)
T KOG0066|consen 586 VLGLHDVTFGYPGQ--KPLFKKLDFGID 611 (807)
T ss_pred eeecccccccCCCC--Cchhhccccccc
Confidence 68899999999985 899999999874
No 89
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=72.53 E-value=2.5 Score=34.33 Aligned_cols=25 Identities=16% Similarity=0.238 Sum_probs=21.0
Q ss_pred eEEEEeceEEecCCCCCCccccceeeecCCCC
Q psy12536 174 SIFIKNIKAKWLPDQPDYTLNDITLDVKNAES 205 (205)
Q Consensus 174 ~I~~~~vsF~Y~~~~~~~vL~~i~l~i~~G~~ 205 (205)
.++++|+++ +.+++|+||+|++||+
T Consensus 257 ~l~~~~~~~-------~~~l~~isl~i~~Ge~ 281 (501)
T PRK11288 257 RLRLDGLKG-------PGLREPISFSVRAGEI 281 (501)
T ss_pred EEEEecccc-------CCcccceeEEEeCCcE
Confidence 489999973 2489999999999984
No 90
>PRK11098 microcin B17 transporter; Reviewed
Probab=72.29 E-value=48 Score=26.41 Aligned_cols=63 Identities=13% Similarity=0.173 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCccccCCCChhhHHHHHHhhHHHHHH
Q psy12536 9 CWALVALIVVDLLIDHQYDLAVQALGMELRVAGCSLIYRKALRLSKTALGDTTVGQVVNLLSNDVNRFDT 78 (205)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~g~i~~~~~~d~~~l~~ 78 (205)
+...+.+.++.........+...++..+-+..+.+...++-++.. ..+ ..-.|++.|+.....
T Consensus 141 l~~f~~i~~~~v~l~v~~~~~~~~l~irWR~wLT~~yl~~Wl~~r--~ie-----nPDQRIqEDi~~F~~ 203 (409)
T PRK11098 141 VGVFLGIALIAVVISVLNNFFVSHYVFRWRTAMNEYYMAHWQKLR--HIE-----GAAQRVQEDTMRFAS 203 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCC-----CccHhHHHHHHHHHH
Confidence 334444445555566667788888888888888888888777654 111 235566666655433
No 91
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=70.09 E-value=3.1 Score=33.76 Aligned_cols=24 Identities=17% Similarity=0.423 Sum_probs=20.3
Q ss_pred eEEEEeceEEecCCCCCCccccceeeecCCCC
Q psy12536 174 SIFIKNIKAKWLPDQPDYTLNDITLDVKNAES 205 (205)
Q Consensus 174 ~I~~~~vsF~Y~~~~~~~vL~~i~l~i~~G~~ 205 (205)
-|+++|+++ ++|+|+||+|++||+
T Consensus 257 ~l~~~~l~~--------~~l~~vsl~i~~Ge~ 280 (501)
T PRK10762 257 RLKVDNLSG--------PGVNDVSFTLRKGEI 280 (501)
T ss_pred EEEEeCccc--------CCcccceEEEcCCcE
Confidence 488999973 379999999999984
No 92
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=60.19 E-value=4 Score=32.33 Aligned_cols=17 Identities=24% Similarity=0.610 Sum_probs=14.8
Q ss_pred CCCccccceeeecCCCC
Q psy12536 189 PDYTLNDITLDVKNAES 205 (205)
Q Consensus 189 ~~~vL~~i~l~i~~G~~ 205 (205)
+.++|+|+||+|+||+.
T Consensus 395 eryvlr~vNL~ikpGdv 411 (593)
T COG2401 395 ERYVLRNLNLEIKPGDV 411 (593)
T ss_pred eeeeeeceeeEecCCCe
Confidence 46799999999999973
No 93
>KOG0059|consensus
Probab=57.59 E-value=8.7 Score=33.80 Aligned_cols=29 Identities=10% Similarity=0.289 Sum_probs=26.1
Q ss_pred eEEEEeceEEecCCCCCCccccceeeecCCC
Q psy12536 174 SIFIKNIKAKWLPDQPDYTLNDITLDVKNAE 204 (205)
Q Consensus 174 ~I~~~~vsF~Y~~~~~~~vL~~i~l~i~~G~ 204 (205)
.+..+|++..|+.. +. +.+++|+.||+||
T Consensus 564 ~~~~~~L~k~y~~~-~~-Av~~ls~~V~~ge 592 (885)
T KOG0059|consen 564 ALVLNNLSKVYGGK-DG-AVRGLSFAVPPGE 592 (885)
T ss_pred eEEEcceeeeecch-hh-hhcceEEEecCCc
Confidence 79999999999876 33 9999999999998
No 94
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=57.48 E-value=8.2 Score=31.50 Aligned_cols=24 Identities=17% Similarity=0.425 Sum_probs=20.2
Q ss_pred eEEEEeceEEecCCCCCCccccceeeecCCCC
Q psy12536 174 SIFIKNIKAKWLPDQPDYTLNDITLDVKNAES 205 (205)
Q Consensus 174 ~I~~~~vsF~Y~~~~~~~vL~~i~l~i~~G~~ 205 (205)
-|+++|++. .+|+|+||+|++||+
T Consensus 268 ~l~~~~l~~--------~~l~~isl~i~~Ge~ 291 (510)
T PRK15439 268 VLTVEDLTG--------EGFRNISLEVRAGEI 291 (510)
T ss_pred eEEEeCCCC--------CCccceeEEEcCCcE
Confidence 489999982 269999999999984
No 95
>PRK13409 putative ATPase RIL; Provisional
Probab=57.41 E-value=5.4 Score=33.22 Aligned_cols=25 Identities=8% Similarity=0.093 Sum_probs=20.4
Q ss_pred EeceEEecCCCCCCccccceeeecCCCC
Q psy12536 178 KNIKAKWLPDQPDYTLNDITLDVKNAES 205 (205)
Q Consensus 178 ~~vsF~Y~~~~~~~vL~~i~l~i~~G~~ 205 (205)
++++++|.+ +..+|+|++ ++++||.
T Consensus 77 ~~~~~~yg~--~~~~L~~l~-~i~~Gev 101 (590)
T PRK13409 77 EEPVHRYGV--NGFKLYGLP-IPKEGKV 101 (590)
T ss_pred cCceEEecC--CceeEecCC-cCCCCCE
Confidence 348999975 357999999 9999984
No 96
>PF10980 DUF2787: Protein of unknown function (DUF2787); InterPro: IPR021248 This bacterial family of proteins has no known function. ; PDB: 2W56_A 2V1L_A.
Probab=53.98 E-value=8.7 Score=24.91 Aligned_cols=31 Identities=10% Similarity=0.108 Sum_probs=23.5
Q ss_pred eEEEEe-----------ceEEecCCCCCCccccceeeecCCC
Q psy12536 174 SIFIKN-----------IKAKWLPDQPDYTLNDITLDVKNAE 204 (205)
Q Consensus 174 ~I~~~~-----------vsF~Y~~~~~~~vL~~i~l~i~~G~ 204 (205)
+|+++. -+|+|.+++-+..=++|+|++..|+
T Consensus 44 EIrl~r~~~~~W~i~yITDFsY~G~~~pEL~keLdF~f~~~~ 85 (128)
T PF10980_consen 44 EIRLERSSSDQWQIVYITDFSYVGGPYPELEKELDFDFSNGW 85 (128)
T ss_dssp EEEEEE-TTS-EEEEEEEEEEEESSSS-EEEEEEEEETTTTE
T ss_pred EEEEEEcCCCCEEEEEEEeeccCCCCCCceeEEEEEeccCCe
Confidence 666666 5799998766667899999988773
No 97
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=48.03 E-value=18 Score=28.74 Aligned_cols=32 Identities=6% Similarity=0.204 Sum_probs=25.8
Q ss_pred eEEEEeceEEecCCC--------CCCccccceeeecCCCC
Q psy12536 174 SIFIKNIKAKWLPDQ--------PDYTLNDITLDVKNAES 205 (205)
Q Consensus 174 ~I~~~~vsF~Y~~~~--------~~~vL~~i~l~i~~G~~ 205 (205)
-++.+||.-.||-++ .-.+.+|+||+.++||+
T Consensus 276 ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqT 315 (534)
T COG4172 276 LLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQT 315 (534)
T ss_pred eEEecceEEEEecCCccccccchheEEeccceeEecCCCe
Confidence 589999999997542 24478999999999985
No 98
>PF13092 CENP-L: Kinetochore complex Sim4 subunit Fta1
Probab=36.30 E-value=22 Score=24.11 Aligned_cols=26 Identities=8% Similarity=0.175 Sum_probs=18.3
Q ss_pred eceEEecCCCCCCccccceeeecCCC
Q psy12536 179 NIKAKWLPDQPDYTLNDITLDVKNAE 204 (205)
Q Consensus 179 ~vsF~Y~~~~~~~vL~~i~l~i~~G~ 204 (205)
.+++.|+--+..+.|+.|+++||+.+
T Consensus 67 ~l~L~f~~p~~~~~L~~i~i~Ip~~d 92 (162)
T PF13092_consen 67 QLTLSFSVPPESPGLKSIDITIPPED 92 (162)
T ss_pred EEEEEecCCCCCCCcCeEEEEECHHH
Confidence 35566652225789999999999753
No 99
>KOG0062|consensus
Probab=35.81 E-value=21 Score=29.21 Aligned_cols=28 Identities=14% Similarity=0.207 Sum_probs=23.3
Q ss_pred eEEEEeceEEecCCCCCCccccceeeecC
Q psy12536 174 SIFIKNIKAKWLPDQPDYTLNDITLDVKN 202 (205)
Q Consensus 174 ~I~~~~vsF~Y~~~~~~~vL~~i~l~i~~ 202 (205)
.+++.+|+|.|+++ +.+.+.++++++..
T Consensus 362 ~l~i~~V~f~y~p~-~y~~~~~~~~d~e~ 389 (582)
T KOG0062|consen 362 NLRISYVAFEYTPS-EYQWRKQLGLDRES 389 (582)
T ss_pred eeEEEeeeccCCCc-chhhhhccCCccch
Confidence 79999999999886 34788988887754
No 100
>PRK14946 DNA polymerase III subunit beta; Provisional
Probab=34.85 E-value=26 Score=27.39 Aligned_cols=28 Identities=21% Similarity=0.141 Sum_probs=21.7
Q ss_pred EEeceEEecCCCCCCccccceeeecCCC
Q psy12536 177 IKNIKAKWLPDQPDYTLNDITLDVKNAE 204 (205)
Q Consensus 177 ~~~vsF~Y~~~~~~~vL~~i~l~i~~G~ 204 (205)
++.+.|+-..+..+|+|+|+.|+++.|+
T Consensus 139 i~kt~fA~s~de~r~~L~Gv~~~~~~~~ 166 (366)
T PRK14946 139 IKNTAFATTNNPNQPILSAINLKSEDNF 166 (366)
T ss_pred HhhEEEEEeCCCCcccceEEEEEEeCCE
Confidence 4578888766546899999999987663
No 101
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=34.01 E-value=33 Score=30.51 Aligned_cols=24 Identities=17% Similarity=0.216 Sum_probs=19.0
Q ss_pred eEEEEeceEEecCCCCCCccccceeeecCCCC
Q psy12536 174 SIFIKNIKAKWLPDQPDYTLNDITLDVKNAES 205 (205)
Q Consensus 174 ~I~~~~vsF~Y~~~~~~~vL~~i~l~i~~G~~ 205 (205)
.++++|++. ..|+|+|++||+|+.
T Consensus 612 ~l~l~~~~~--------~~Lk~vsl~Ip~Gei 635 (924)
T TIGR00630 612 FLTLKGARE--------NNLKNITVSIPLGLF 635 (924)
T ss_pred eEEEEeCcc--------CCcCceEEEEeCCCE
Confidence 378888751 359999999999984
No 102
>PRK14944 DNA polymerase III subunit beta; Provisional
Probab=32.83 E-value=25 Score=27.49 Aligned_cols=27 Identities=15% Similarity=0.095 Sum_probs=20.3
Q ss_pred EeceEEecCCCCCCccccceeeecCCC
Q psy12536 178 KNIKAKWLPDQPDYTLNDITLDVKNAE 204 (205)
Q Consensus 178 ~~vsF~Y~~~~~~~vL~~i~l~i~~G~ 204 (205)
+.+.|+-..+..+|+|+|+.|+++.|+
T Consensus 143 ~~t~fa~s~de~r~~L~Gv~~~~~~~~ 169 (375)
T PRK14944 143 KEINISTSKNEKRPILTGLNLIYQKNL 169 (375)
T ss_pred hheeEEEccccCccceeEEEEEEECCE
Confidence 456777655546899999999988764
No 103
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=32.75 E-value=20 Score=33.42 Aligned_cols=17 Identities=18% Similarity=-0.041 Sum_probs=15.2
Q ss_pred CCCccccceeeecCCCC
Q psy12536 189 PDYTLNDITLDVKNAES 205 (205)
Q Consensus 189 ~~~vL~~i~l~i~~G~~ 205 (205)
++++|+|+|+++++||+
T Consensus 73 ~~~iL~~vs~~i~~Ge~ 89 (1394)
T TIGR00956 73 TFDILKPMDGLIKPGEL 89 (1394)
T ss_pred cceeeeCCEEEEECCEE
Confidence 57799999999999984
No 104
>PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A.
Probab=32.74 E-value=1.8e+02 Score=20.53 Aligned_cols=158 Identities=10% Similarity=0.041 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhc----CCccccCCCChhhHHH---HHHhhHHHH----HHHH
Q psy12536 12 LVALIVVDLLIDHQYDLAVQALGMELRVAGCSLIYRKALR----LSKTALGDTTVGQVVN---LLSNDVNRF----DTAC 80 (205)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~----~~~~~~~~~~~g~i~~---~~~~d~~~l----~~~~ 80 (205)
..+.........+.......+...+++.++.+++.+.-.. .+.+...++-+.|+-+ .+......+ ...+
T Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~l~~~i~~d~~~i~~~~~~~~~~~~~~~~~~i 130 (275)
T PF00664_consen 51 FLLIFLFSYIYFYLSSRISQRIRKDLRKRLFEKLLRLPYSYFDKNSSGELLSRITNDIEQIENFLSSSLFQIISSIISII 130 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccccccccccccccccccccccccccccccchhh
Confidence 3334444444455567778888888888888888776655 6655544433333222 111111111 0000
Q ss_pred ------------HHHhH----HHHHHHHHH-HHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHhhhH-HHHHHH
Q psy12536 81 ------------IFLHH----LINRLLGAK-KMYLGKKTSELRLKTALRTDERVRLMNEIISGIQVIKMYAWE-RSFASM 142 (205)
Q Consensus 81 ------------~~~~~----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e-~~~~~~ 142 (205)
..+.. .+..++... .....+..++..+...+ ..+......+.+.-+|.-..-..+ +.+.+.
T Consensus 131 ~~~~~~~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~ 209 (275)
T PF00664_consen 131 FSLILLFFISWKLALILLIILPLLFLISFIFSKKIRKLSKKYQEANSE-LNSFLSESLSGIRTIKAFGAEDYFLERFNKA 209 (275)
T ss_dssp HHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHTHHHHHHTTSHHHHHHHHHHH
T ss_pred hhhhcccccccccccccchhhhhhHhhhhhhccccccccccccccccc-cccccccchhhhHHHHHHHhhHHHHHHHHHH
Confidence 01111 144444433 55555555554444444 555555666777878776666654 456666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12536 143 VRNARKKEIQQIRGSTYIKGVLLSFIIF 170 (205)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (205)
.++..+...+..........+...+..+
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (275)
T PF00664_consen 210 LEKYRKASFKYAKIQALLSSISQFISYL 237 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6667777776666666666655554443
No 105
>PF11446 DUF2897: Protein of unknown function (DUF2897); InterPro: IPR021550 This is a bacterial family of uncharacterised proteins.
Probab=32.67 E-value=86 Score=16.97 Aligned_cols=12 Identities=0% Similarity=-0.213 Sum_probs=4.8
Q ss_pred CCchHHHHHHHH
Q psy12536 2 PLTAPTACWALV 13 (205)
Q Consensus 2 ~~~~~~~~~~~~ 13 (205)
++.+|+++++.+
T Consensus 2 ~~~~wlIIviVl 13 (55)
T PF11446_consen 2 TWNPWLIIVIVL 13 (55)
T ss_pred cchhhHHHHHHH
Confidence 344444433333
No 106
>PRK06673 DNA polymerase III subunit beta; Validated
Probab=32.46 E-value=28 Score=27.29 Aligned_cols=28 Identities=7% Similarity=0.165 Sum_probs=21.7
Q ss_pred EEeceEEecCCCCCCccccceeeecCCC
Q psy12536 177 IKNIKAKWLPDQPDYTLNDITLDVKNAE 204 (205)
Q Consensus 177 ~~~vsF~Y~~~~~~~vL~~i~l~i~~G~ 204 (205)
++.+.|+-..+..+|+|+|+.|++..|+
T Consensus 145 i~kt~fA~s~~e~r~~L~Gv~l~~~~~~ 172 (376)
T PRK06673 145 FKQTVFAVAKNESRPVLTGVHIELDHNK 172 (376)
T ss_pred HhhEeEEEecCCCChhceeEEEEEeCCE
Confidence 4577888765557899999999997764
No 107
>PLN03140 ABC transporter G family member; Provisional
Probab=30.30 E-value=24 Score=33.14 Aligned_cols=17 Identities=18% Similarity=0.010 Sum_probs=14.8
Q ss_pred CCCccccceeeecCCCC
Q psy12536 189 PDYTLNDITLDVKNAES 205 (205)
Q Consensus 189 ~~~vL~~i~l~i~~G~~ 205 (205)
++++|+|+|+.|+|||+
T Consensus 177 ~~~IL~~vs~~i~~Ge~ 193 (1470)
T PLN03140 177 KLTILKDASGIIKPSRM 193 (1470)
T ss_pred cceeccCCeEEEeCCeE
Confidence 35699999999999984
No 108
>PRK14940 DNA polymerase III subunit beta; Provisional
Probab=28.53 E-value=34 Score=26.65 Aligned_cols=27 Identities=11% Similarity=0.206 Sum_probs=21.1
Q ss_pred EeceEEecCCCCCCccccceeeecCCC
Q psy12536 178 KNIKAKWLPDQPDYTLNDITLDVKNAE 204 (205)
Q Consensus 178 ~~vsF~Y~~~~~~~vL~~i~l~i~~G~ 204 (205)
+.|.|+-+.++.+|+|+|+.|+++.|+
T Consensus 140 ~~v~~a~s~~~~rpiL~Gv~~~~~~~~ 166 (367)
T PRK14940 140 NQTIFAVSDDETRYFMNGVYVEFQYGN 166 (367)
T ss_pred hhEeEEEcCCCCCceeEEEEEEEeCCE
Confidence 467777766657899999999988774
No 109
>PRK14942 DNA polymerase III subunit beta; Provisional
Probab=27.95 E-value=32 Score=26.94 Aligned_cols=28 Identities=7% Similarity=0.176 Sum_probs=21.3
Q ss_pred EEeceEEecCCCCCCccccceeeecCCC
Q psy12536 177 IKNIKAKWLPDQPDYTLNDITLDVKNAE 204 (205)
Q Consensus 177 ~~~vsF~Y~~~~~~~vL~~i~l~i~~G~ 204 (205)
++.+.|+-..+..+|+|+|+.|++..|+
T Consensus 146 i~~t~fa~s~de~R~~L~Gv~~~~~~~~ 173 (373)
T PRK14942 146 IRKTSYAIAHEDQRFIFNGLYMIPDGTK 173 (373)
T ss_pred HhhEeEEEeccccchhheeEEEEEeCCE
Confidence 3567777655557899999999998764
No 110
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=27.19 E-value=49 Score=27.09 Aligned_cols=25 Identities=16% Similarity=0.383 Sum_probs=17.9
Q ss_pred eEEEEeceEEecCCCCCCccccceeeecCCCC
Q psy12536 174 SIFIKNIKAKWLPDQPDYTLNDITLDVKNAES 205 (205)
Q Consensus 174 ~I~~~~vsF~Y~~~~~~~vL~~i~l~i~~G~~ 205 (205)
-++++|++. ...++|+||++.+||+
T Consensus 263 ~l~v~~l~~-------~~~~~dvSf~vr~GEI 287 (500)
T COG1129 263 VLEVRNLSG-------GGKVRDVSFTVRAGEI 287 (500)
T ss_pred EEEEecCCC-------CCceeCceeEEeCCcE
Confidence 456666642 2257999999999985
No 111
>PRK05643 DNA polymerase III subunit beta; Validated
Probab=25.77 E-value=42 Score=26.02 Aligned_cols=27 Identities=19% Similarity=0.370 Sum_probs=19.8
Q ss_pred EeceEEecCCCCCCccccceeeecCCC
Q psy12536 178 KNIKAKWLPDQPDYTLNDITLDVKNAE 204 (205)
Q Consensus 178 ~~vsF~Y~~~~~~~vL~~i~l~i~~G~ 204 (205)
+.|.|+-+.++.+|+|.+|.|++..|+
T Consensus 141 ~~v~~a~~~~~~~piL~gi~~~~~~~~ 167 (367)
T PRK05643 141 EKTQFAMSTQETRYYLNGVLLEIEGNE 167 (367)
T ss_pred hheeEEeecCCccccccEEEEEEeCCE
Confidence 356666655556899999999987764
No 112
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=25.08 E-value=48 Score=29.63 Aligned_cols=24 Identities=8% Similarity=0.277 Sum_probs=18.7
Q ss_pred eEEEEeceEEecCCCCCCccccceeeecCCCC
Q psy12536 174 SIFIKNIKAKWLPDQPDYTLNDITLDVKNAES 205 (205)
Q Consensus 174 ~I~~~~vsF~Y~~~~~~~vL~~i~l~i~~G~~ 205 (205)
.++++|++ ...|+|+|++||+||+
T Consensus 614 ~L~v~~l~--------~~~L~~isl~Ip~Gei 637 (943)
T PRK00349 614 FLKLKGAR--------ENNLKNVDVEIPLGKF 637 (943)
T ss_pred eEEecCCc--------cCCcCceEEEEeCCCE
Confidence 37777775 1359999999999984
No 113
>PF04648 MF_alpha: Yeast mating factor alpha hormone; InterPro: IPR006742 This repeated sequence,WHWLQLKPGQPMY, characterises the mating factor alpha-1 or alpha-1 mating pheromone [contains: Mating factor alpha].The hormone is excreted into the culture medium by haploid cells of the alpha mating type and acts on cells of the opposite mating type (type A) by binding to a cognate G-protein coupled receptor which is coupled to a downstream signal transduction pathway. It inhibits DNA synthesis in type A cells synchronising them with type alpha, and so mediates the conjugation process.; GO: 0000772 mating pheromone activity, 0019953 sexual reproduction, 0005576 extracellular region
Probab=24.70 E-value=45 Score=12.10 Aligned_cols=6 Identities=0% Similarity=0.163 Sum_probs=3.1
Q ss_pred eecCCC
Q psy12536 199 DVKNAE 204 (205)
Q Consensus 199 ~i~~G~ 204 (205)
.+.+||
T Consensus 5 ~~~~Gq 10 (13)
T PF04648_consen 5 RLSPGQ 10 (13)
T ss_pred eccCCC
Confidence 445554
No 114
>smart00480 POL3Bc DNA polymerase III beta subunit.
Probab=24.18 E-value=47 Score=25.52 Aligned_cols=27 Identities=22% Similarity=0.324 Sum_probs=20.3
Q ss_pred EeceEEecCCCCCCccccceeeecCCC
Q psy12536 178 KNIKAKWLPDQPDYTLNDITLDVKNAE 204 (205)
Q Consensus 178 ~~vsF~Y~~~~~~~vL~~i~l~i~~G~ 204 (205)
+.|.|+-+.++.+|+|+|+.|++..|+
T Consensus 123 ~~v~~a~s~~~~~piL~Gi~~~~~~~~ 149 (345)
T smart00480 123 EKTAFAVSTDETRPVLNGVNLEISNGE 149 (345)
T ss_pred hhEEEEEecCCCcceeeEEEEEEECCE
Confidence 567777665556889999999987763
No 115
>KOG3491|consensus
Probab=23.74 E-value=1.4e+02 Score=16.33 Aligned_cols=21 Identities=14% Similarity=0.006 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy12536 6 PTACWALVALIVVDLLIDHQY 26 (205)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~ 26 (205)
++++..++.+.+.++++..+.
T Consensus 39 PwLlglFvFVVcGSa~FqIIr 59 (65)
T KOG3491|consen 39 PWLLGLFVFVVCGSALFQIIR 59 (65)
T ss_pred hHHHHHHHHHhhcHHHHHHHH
Confidence 344444444445566665544
No 116
>PRK14941 DNA polymerase III subunit beta; Provisional
Probab=21.99 E-value=48 Score=25.91 Aligned_cols=27 Identities=4% Similarity=0.011 Sum_probs=20.4
Q ss_pred EeceEEecCCCCCCccccceeeecCCC
Q psy12536 178 KNIKAKWLPDQPDYTLNDITLDVKNAE 204 (205)
Q Consensus 178 ~~vsF~Y~~~~~~~vL~~i~l~i~~G~ 204 (205)
+.|.|+-+.++.+|+|+|+.|+++.|+
T Consensus 143 ~~v~~a~s~~~~rpiL~Gv~l~~~~~~ 169 (374)
T PRK14941 143 QKTIFACSVDGMRPAMMGVLFELEGNT 169 (374)
T ss_pred hheeEEEecccchhhhceEEEEEeCCE
Confidence 456777666657899999999987764
No 117
>KOG4701|consensus
Probab=21.64 E-value=52 Score=25.84 Aligned_cols=21 Identities=5% Similarity=0.273 Sum_probs=16.5
Q ss_pred EecCCCCCCccccceeeecCCC
Q psy12536 183 KWLPDQPDYTLNDITLDVKNAE 204 (205)
Q Consensus 183 ~Y~~~~~~~vL~~i~l~i~~G~ 204 (205)
+|.+- ++.|+++++|+|+.|.
T Consensus 142 S~RPf-g~AVvDGfDF~IE~g~ 162 (568)
T KOG4701|consen 142 SYRPF-GKAVVDGFDFEIEKGT 162 (568)
T ss_pred ccCcc-cchhccceeeeeecCC
Confidence 45444 5789999999999984
No 118
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=20.83 E-value=62 Score=23.82 Aligned_cols=12 Identities=25% Similarity=0.271 Sum_probs=11.0
Q ss_pred EEEEeceEEecC
Q psy12536 175 IFIKNIKAKWLP 186 (205)
Q Consensus 175 I~~~~vsF~Y~~ 186 (205)
|+++||+.+|.+
T Consensus 32 i~l~~v~v~r~g 43 (257)
T COG1119 32 IELKNVSVRRNG 43 (257)
T ss_pred EEecceEEEECC
Confidence 899999999985
No 119
>TIGR03774 RPE2 Rickettsial palindromic element RPE2 domain. This model describes protein translations of a second family, RPE2, of Rickettsia palindromic elements (RPE). The elements spread within a genome as selfish genetic elements, inserting into genes additional coding regions that does not disrupt the reading frame. This model finds RPE-encoded regions in several Rickettsial species and, so far, no where else.
Probab=20.36 E-value=56 Score=15.54 Aligned_cols=17 Identities=0% Similarity=-0.009 Sum_probs=10.8
Q ss_pred EEeceEEecCCCCCCcc
Q psy12536 177 IKNIKAKWLPDQPDYTL 193 (205)
Q Consensus 177 ~~~vsF~Y~~~~~~~vL 193 (205)
++-|+|.|-++..+|+.
T Consensus 2 Vns~~~gyKe~gakPIt 18 (35)
T TIGR03774 2 VNSVGFGYKERGAKPIT 18 (35)
T ss_pred cccccccccccCCcccc
Confidence 35688999655445654
Done!