Query psy12536
Match_columns 205
No_of_seqs 157 out of 1695
Neff 11.2
Searched_HMMs 29240
Date Fri Aug 16 21:49:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12536.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12536hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f4c_A Multidrug resistance pr 100.0 2.9E-28 9.8E-33 208.6 23.6 198 8-205 138-446 (1321)
2 4a82_A Cystic fibrosis transme 99.9 5.7E-26 2E-30 180.9 22.4 198 7-205 62-369 (578)
3 3qf4_A ABC transporter, ATP-bi 99.9 1.8E-25 6.1E-30 178.2 25.2 147 7-153 64-238 (587)
4 3qf4_B Uncharacterized ABC tra 99.9 2E-25 6.9E-30 178.3 23.5 153 6-158 77-257 (598)
5 3b5x_A Lipid A export ATP-bind 99.9 2.5E-24 8.4E-29 171.8 26.9 194 11-205 70-371 (582)
6 4f4c_A Multidrug resistance pr 99.9 6.8E-26 2.3E-30 194.1 18.3 200 6-205 794-1107(1321)
7 2yl4_A ATP-binding cassette SU 99.9 1.7E-24 5.8E-29 173.1 25.0 145 8-152 64-236 (595)
8 3b60_A Lipid A export ATP-bind 99.9 2.4E-24 8E-29 171.9 25.7 194 11-205 70-371 (582)
9 3g5u_A MCG1178, multidrug resi 99.9 3E-25 1E-29 189.7 18.5 146 8-153 110-283 (1284)
10 3g5u_A MCG1178, multidrug resi 99.9 6.6E-21 2.3E-25 163.2 23.4 147 8-154 751-927 (1284)
11 3nh6_A ATP-binding cassette SU 97.9 4.9E-06 1.7E-10 61.1 2.5 30 174-205 53-82 (306)
12 2iw3_A Elongation factor 3A; a 96.2 0.0024 8.3E-08 53.9 2.7 31 174-205 671-701 (986)
13 2v9p_A Replication protein E1; 95.0 0.00019 6.6E-09 52.6 -7.0 27 175-205 102-128 (305)
14 2bbs_A Cystic fibrosis transme 94.5 0.01 3.4E-07 43.3 1.0 27 174-205 40-66 (290)
15 3ice_A Transcription terminati 91.2 0.019 6.4E-07 43.5 -1.7 30 174-205 133-176 (422)
16 2iw3_A Elongation factor 3A; a 90.7 0.11 3.8E-06 44.1 2.2 29 174-205 435-463 (986)
17 3bk7_A ABC transporter ATP-bin 84.7 0.29 9.9E-06 39.5 1.1 25 178-205 95-119 (607)
18 2gza_A Type IV secretion syste 82.4 0.021 7.1E-07 43.0 -6.0 29 176-205 137-177 (361)
19 2dpy_A FLII, flagellum-specifi 77.8 0.12 4E-06 40.0 -3.3 29 174-205 131-159 (438)
20 3ux8_A Excinuclease ABC, A sub 76.7 0.84 2.9E-05 37.3 1.3 30 175-205 321-350 (670)
21 2obl_A ESCN; ATPase, hydrolase 71.7 0.27 9.3E-06 36.7 -2.5 28 175-205 46-73 (347)
22 1yqt_A RNAse L inhibitor; ATP- 70.2 2 6.7E-05 34.2 1.9 28 174-205 287-314 (538)
23 3bk7_A ABC transporter ATP-bin 67.1 2.5 8.7E-05 34.1 2.0 28 174-205 357-384 (607)
24 2vf7_A UVRA2, excinuclease ABC 63.7 3.6 0.00012 34.6 2.3 24 174-205 502-525 (842)
25 3j16_B RLI1P; ribosome recycli 59.7 1.6 5.6E-05 35.2 -0.4 26 177-204 349-374 (608)
26 2o8b_B DNA mismatch repair pro 57.6 4.7 0.00016 34.8 2.0 26 175-202 751-781 (1022)
27 3ozx_A RNAse L inhibitor; ATP 53.7 5.9 0.0002 31.5 1.9 28 174-205 269-296 (538)
28 2pt7_A CAG-ALFA; ATPase, prote 50.9 0.27 9.2E-06 36.4 -5.8 14 192-205 160-173 (330)
29 2r6f_A Excinuclease ABC subuni 46.3 10 0.00035 32.5 2.2 24 174-205 629-652 (972)
30 2w56_A VC0508; unknown functio 46.2 12 0.0004 24.1 2.0 24 181-204 79-102 (147)
31 3pih_A Uvrabc system protein A 44.6 8 0.00027 33.0 1.4 24 181-205 589-612 (916)
32 2ygr_A Uvrabc system protein A 44.5 11 0.00038 32.4 2.2 24 174-205 647-670 (993)
33 2v1l_A Hypothetical protein; p 44.1 12 0.00041 24.0 1.9 24 181-204 79-102 (148)
34 3j16_B RLI1P; ribosome recycli 29.4 15 0.0005 29.8 0.6 25 178-205 81-105 (608)
35 2npi_A Protein CLP1; CLP1-PCF1 28.5 1.2 4.1E-05 34.6 -5.6 22 175-205 119-140 (460)
36 2xiw_A DNA-binding protein 7D; 23.8 19 0.00066 19.2 0.3 10 178-187 39-48 (79)
37 3thx_B DNA mismatch repair pro 23.1 1.8E+02 0.0063 25.0 6.0 32 174-205 640-675 (918)
38 1sq5_A Pantothenate kinase; P- 21.2 0.96 3.3E-05 33.0 -7.1 22 174-200 37-58 (308)
No 1
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.96 E-value=2.9e-28 Score=208.60 Aligned_cols=198 Identities=13% Similarity=0.086 Sum_probs=156.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCccccCCCChhhHHHHHHhhHHHHHHHHHHH-hHH
Q psy12536 8 ACWALVALIVVDLLIDHQYDLAVQALGMELRVAGCSLIYRKALRLSKTALGDTTVGQVVNLLSNDVNRFDTACIFL-HHL 86 (205)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~g~i~~~~~~d~~~l~~~~~~~-~~~ 86 (205)
+++.++++.+...++.++..++....+.++..++|.++|+|++++|++||+++++|++++++++|++.+++.+... ..+
T Consensus 138 ~~~~~~~l~i~~~~~~~~~~~~~~~~~~r~~~~lR~~~~~~ll~~~~~~fd~~~~G~l~sr~~~D~~~i~~~~~~~l~~~ 217 (1321)
T 4f4c_A 138 VVWSYAAMTVGMWAAGQITVTCYLYVAEQMNNRLRREFVKSILRQEISWFDTNHSGTLATKLFDNLERVKEGTGDKIGMA 217 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHTCCTTHHHHHHHHHHHHHHTSSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666677788888999999999999999999999999999999999999999999999999999988765321 111
Q ss_pred ------------------HH-HHHH--------HHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHhhhHHHH
Q psy12536 87 ------------------IN-RLLG--------AKKMYLGKKTSELRLKTALRTDERVRLMNEIISGIQVIKMYAWERSF 139 (205)
Q Consensus 87 ------------------~~-~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~ 139 (205)
|. +++. ++...+.++.++..++..+..++..+.+.|.++|+++||+|++|+.+
T Consensus 218 ~~~~~~~i~~~i~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~ 297 (1321)
T 4f4c_A 218 FQYLSQFITGFIVAFTHSWQLTLVMLAVTPIQALCGFAIAKSMSTFAIRETLRYAKAGKVVEETISSIRTVVSLNGLRYE 297 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcccHHH
Confidence 00 0000 11677888999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc----------------------------------------------
Q psy12536 140 ASMVRNARKKEIQQIRGSTYIKGVLLSFIIFHTR---------------------------------------------- 173 (205)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------------- 173 (205)
.+++.+..++..+...+......+......++..
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~~~~~~~ 377 (1321)
T 4f4c_A 298 LERYSTAVEEAKKAGVLKGLFLGISFGAMQASNFISFALAFYIGVGWVHDGSLNFGDMLTTFSSVMMGSMALGLAGPQLA 377 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888777666655555544444333322222111
Q ss_pred -------------------------------------eEEEEeceEEecCCCCCCccccceeeecCCCC
Q psy12536 174 -------------------------------------SIFIKNIKAKWLPDQPDYTLNDITLDVKNAES 205 (205)
Q Consensus 174 -------------------------------------~I~~~~vsF~Y~~~~~~~vL~~i~l~i~~G~~ 205 (205)
+|+|+||+|+||+++++|+|+|+||+|||||+
T Consensus 378 ~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~ 446 (1321)
T 4f4c_A 378 VLGTAQGAASGIYEVLDRKPVIDSSSKAGRKDMKIKGDITVENVHFTYPSRPDVPILRGMNLRVNAGQT 446 (1321)
T ss_dssp HHHHHHHHHHHHHHHTTTSCCSSCSSSCCCCCCCCCCCEEEEEEEECCSSSTTSCSEEEEEEEECTTCE
T ss_pred HHHHHHHHHHHHHHHHcCCccccccccccccCCCCCCcEEEEEeeeeCCCCCCCceeeceEEeecCCcE
Confidence 69999999999987788999999999999984
No 2
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.95 E-value=5.7e-26 Score=180.89 Aligned_cols=198 Identities=17% Similarity=0.175 Sum_probs=152.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCccccCCCChhhHHHHHHhhHHHHHHHHHH-HhH
Q psy12536 7 TACWALVALIVVDLLIDHQYDLAVQALGMELRVAGCSLIYRKALRLSKTALGDTTVGQVVNLLSNDVNRFDTACIF-LHH 85 (205)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~g~i~~~~~~d~~~l~~~~~~-~~~ 85 (205)
.++++++++.++..++.+...+...+.+.++..++|.++|+|++++|+.+|+++++|++++++++|++.+.+.+.. +..
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~ 141 (578)
T 4a82_A 62 AIGIALFIFVIVRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKDFILTGLMN 141 (578)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHTSCHHHHHHHHHHHHHHTHHHHHCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666778888999999999999999999999999999999999999999999999999999998877532 110
Q ss_pred H----------------------HHH-----HHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHhhhHHH
Q psy12536 86 L----------------------INR-----LLGAKKMYLGKKTSELRLKTALRTDERVRLMNEIISGIQVIKMYAWERS 138 (205)
Q Consensus 86 ~----------------------~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~ 138 (205)
. +.. +..++...+.++.++..++..+..++..+.+.|.++|+++||+|++|+.
T Consensus 142 ~~~~~~~~i~~~~~l~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~ 221 (578)
T 4a82_A 142 IWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDN 221 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHH
Confidence 1 000 0011166778888899999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhhcc-----------------------------------------
Q psy12536 139 FASMVRNARKKEIQQIRGSTYIK----GVLLSFIIFHTR----------------------------------------- 173 (205)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~----------------------------------------- 173 (205)
+.+++++..+...+...+..... .+...+..+...
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~ 301 (578)
T 4a82_A 222 EAKNFDKKNTNFLTRALKHTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASF 301 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88887776665554444333332 222222111111
Q ss_pred -------------------------------------eEEEEeceEEecCCCCCCccccceeeecCCCC
Q psy12536 174 -------------------------------------SIFIKNIKAKWLPDQPDYTLNDITLDVKNAES 205 (205)
Q Consensus 174 -------------------------------------~I~~~~vsF~Y~~~~~~~vL~~i~l~i~~G~~ 205 (205)
+|+++||+|+|+++ ++++|+|+||+|++||+
T Consensus 302 ~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~isl~i~~G~~ 369 (578)
T 4a82_A 302 TTLTQSFASMDRVFQLIDEDYDIKNGVGAQPIEIKQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGET 369 (578)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCSSCCCTTCCCCCCCSCCEEEEEEEECSCSS-SCCSEEEEEEEECTTCE
T ss_pred HHHHHHHHHHHHHHHHHcCCCcccCCCCccccCCCCCeEEEEEEEEEcCCC-CCcceeeeEEEECCCCE
Confidence 59999999999875 57899999999999984
No 3
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.95 E-value=1.8e-25 Score=178.17 Aligned_cols=147 Identities=16% Similarity=0.188 Sum_probs=117.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCccccCCCChhhHHHHHHhhHHHHHHHHHHHhH-
Q psy12536 7 TACWALVALIVVDLLIDHQYDLAVQALGMELRVAGCSLIYRKALRLSKTALGDTTVGQVVNLLSNDVNRFDTACIFLHH- 85 (205)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~g~i~~~~~~d~~~l~~~~~~~~~- 85 (205)
.++++++++.++..++.+...++..+.+.++..++|.++|+|++++|+.+|++.++|++++++++|++.+.+.+.....
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~ 143 (587)
T 3qf4_A 64 KTGILMLIVALIGAVGGIGCTVFASYASQNFGADLRRDLFRKVLSFSISNVNRFHTSSLITRLTNDVTQLQNLVMMLLRI 143 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666777888888899999999999999999999999999999999999999999999999999887653211
Q ss_pred H----------------------HHHHHH-----HHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHhhhHHH
Q psy12536 86 L----------------------INRLLG-----AKKMYLGKKTSELRLKTALRTDERVRLMNEIISGIQVIKMYAWERS 138 (205)
Q Consensus 86 ~----------------------~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~ 138 (205)
+ +..++. ++..++.++.++..++..+..++..+.+.|.++|+++||+|++|+.
T Consensus 144 ~~~~~~~~i~~~~~l~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~ 223 (587)
T 3qf4_A 144 VVRAPLLFVGGIVMAVSINVKLSSVLIFLIPPIVLLFVWLTKKGNPLFRKIQESTDEVNRVVRENLLGVRVVRAFRREEY 223 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHH
Confidence 1 000000 0156677888888899999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHH
Q psy12536 139 FASMVRNARKKEIQQ 153 (205)
Q Consensus 139 ~~~~~~~~~~~~~~~ 153 (205)
+.+++++..+...+.
T Consensus 224 ~~~~~~~~~~~~~~~ 238 (587)
T 3qf4_A 224 ENENFRKANESLRRS 238 (587)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 777776655544433
No 4
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.95 E-value=2e-25 Score=178.30 Aligned_cols=153 Identities=14% Similarity=0.132 Sum_probs=124.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCccccCCCChhhHHHHHHhhHHHHHHHHHH-Hh
Q psy12536 6 PTACWALVALIVVDLLIDHQYDLAVQALGMELRVAGCSLIYRKALRLSKTALGDTTVGQVVNLLSNDVNRFDTACIF-LH 84 (205)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~g~i~~~~~~d~~~l~~~~~~-~~ 84 (205)
+.++++++++.++..++.+...+...+.+.++..++|.++|+|++++|+.+|+++++|++++++++|++.+.+.+.. +.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~ 156 (598)
T 3qf4_B 77 PRYMLILGTIYALTSLLFWLQGKIMLTLSQDVVFRLRKELFEKLQRVPVGFFDRTPHGDIISRVINDVDNINNVLGNSII 156 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTHHHHHSCHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666777888899999999999999999999999999999999999999999999999999999999887642 21
Q ss_pred HH------------------H-HHHH--------HHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHhhhHH
Q psy12536 85 HL------------------I-NRLL--------GAKKMYLGKKTSELRLKTALRTDERVRLMNEIISGIQVIKMYAWER 137 (205)
Q Consensus 85 ~~------------------~-~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~ 137 (205)
.. + .+++ .++...+.++.++..++..+..++..+.+.|.++|+++||+|++|+
T Consensus 157 ~~~~~~~~~i~~~~~l~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~ 236 (598)
T 3qf4_B 157 QFFSGIVTLAGAVIMMFRVNVILSLVTLSIVPLTVLITQIVSSQTRKYFYENQRVLGQLNGIIEEDISGLTVIKLFTREE 236 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHcCChH
Confidence 11 0 0000 0016667788888889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy12536 138 SFASMVRNARKKEIQQIRGST 158 (205)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~ 158 (205)
.+.+++++..+...+...+..
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~ 257 (598)
T 3qf4_B 237 KEMEKFDRVNESLRKVGTKAQ 257 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 988888877776655544433
No 5
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.94 E-value=2.5e-24 Score=171.75 Aligned_cols=194 Identities=8% Similarity=0.123 Sum_probs=147.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCccccCCCChhhHHHHHHhhHHHHHHHHHH-HhHH---
Q psy12536 11 ALVALIVVDLLIDHQYDLAVQALGMELRVAGCSLIYRKALRLSKTALGDTTVGQVVNLLSNDVNRFDTACIF-LHHL--- 86 (205)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~g~i~~~~~~d~~~l~~~~~~-~~~~--- 86 (205)
+++++.++..++.+...++..+.+.++..++|.++|+|++++|+.+|++.++|++++++++|++.+.+.+.. +..+
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~l~~rl~~d~~~i~~~~~~~~~~~~~~ 149 (582)
T 3b5x_A 70 MILGLMFVRGLSGFASSYCLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQESTGGLLSRITYDSEQVAGATSRALVSIVRE 149 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566778888999999999999999999999999999999999999999999999999999999887542 1111
Q ss_pred ---------------H-HHHHHH--------HHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHhhhHHHHHHH
Q psy12536 87 ---------------I-NRLLGA--------KKMYLGKKTSELRLKTALRTDERVRLMNEIISGIQVIKMYAWERSFASM 142 (205)
Q Consensus 87 ---------------~-~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~ 142 (205)
| .+++.+ +...+.++.++..++..+..++..+.+.|.++|+++||+|++|+.+.++
T Consensus 150 ~~~~i~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~ 229 (582)
T 3b5x_A 150 GASIIGLLTLMFWNSWQLSLVLIVVAPVVAFAISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKR 229 (582)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCcHHHHHH
Confidence 0 001000 0556778888888999999999999999999999999999999987777
Q ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHHhhcc---------------------------------------------
Q psy12536 143 VRNARKKEIQ----QIRGSTYIKGVLLSFIIFHTR--------------------------------------------- 173 (205)
Q Consensus 143 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~--------------------------------------------- 173 (205)
+++..++..+ ..+.......+...+..+...
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~ 309 (582)
T 3b5x_A 230 FDKVSNSMRQQTMKLVSAQSIADPVIQMIASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQ 309 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6655544433 333333333322222211111
Q ss_pred -------------------------------eEEEEeceEEecCCCCCCccccceeeecCCCC
Q psy12536 174 -------------------------------SIFIKNIKAKWLPDQPDYTLNDITLDVKNAES 205 (205)
Q Consensus 174 -------------------------------~I~~~~vsF~Y~~~~~~~vL~~i~l~i~~G~~ 205 (205)
.|+++||+|+|+++ ++++|+|+||+|++||+
T Consensus 310 ~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~i~l~i~~G~~ 371 (582)
T 3b5x_A 310 RGMAACQTLFGLMDLETERDNGKYEAERVNGEVDVKDVTFTYQGK-EKPALSHVSFSIPQGKT 371 (582)
T ss_pred HHHHHHHHHHHHHcCCCcCCCCCCCCCCCCCeEEEEEEEEEcCCC-CccccccceEEECCCCE
Confidence 49999999999864 36899999999999984
No 6
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.94 E-value=6.8e-26 Score=194.07 Aligned_cols=200 Identities=14% Similarity=0.152 Sum_probs=146.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCccccCC--CChhhHHHHHHhhHHHHHHHHHHH
Q psy12536 6 PTACWALVALIVVDLLIDHQYDLAVQALGMELRVAGCSLIYRKALRLSKTALGD--TTVGQVVNLLSNDVNRFDTACIFL 83 (205)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~--~~~g~i~~~~~~d~~~l~~~~~~~ 83 (205)
..++++++++.++..++.++..++....+.++..++|.++|++++++|++||+. +++|++++++++|++.+...+...
T Consensus 794 ~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~~~ffd~~~~~~G~i~~r~s~D~~~i~~~l~~~ 873 (1321)
T 4f4c_A 794 HFWALMFLVLAAAQGICSFLMTFFMGIASESLTRDLRNKLFRNVLSQHIGFFDSPQNASGKISTRLATDVPNLRTAIDFR 873 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCSSSTTSGGGCHHHHHHHHHTHHHHHHTTTSHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhccCCCChHHHHhcchhhHHHHHHHHHHH
Confidence 445666777778888999999999999999999999999999999999999986 679999999999999887654321
Q ss_pred h-HH------------------H-HHHHHHH--------HHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHhhh
Q psy12536 84 H-HL------------------I-NRLLGAK--------KMYLGKKTSELRLKTALRTDERVRLMNEIISGIQVIKMYAW 135 (205)
Q Consensus 84 ~-~~------------------~-~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~ 135 (205)
. .+ | .+++.++ .....++..+...+..+..++....+.|.++|+++||+|++
T Consensus 874 l~~~~~~~~~~i~~~~~~~~~~~~l~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~ 953 (1321)
T 4f4c_A 874 FSTVITTLVSMVAGIGLAFFYGWQMALLIIAILPIVAFGQYLRGRRFTGKNVKSASEFADSGKIAIEAIENVRTVQALAR 953 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTSCCSSCSTTTSSHHHHHHHHHHHHHHTHHHHHHTTT
T ss_pred HHHHHHHhhhHHHHeeeehHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccc
Confidence 1 11 0 0000000 22222333334455667778888999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc------------------------------------------
Q psy12536 136 ERSFASMVRNARKKEIQQIRGSTYIKGVLLSFIIFHTR------------------------------------------ 173 (205)
Q Consensus 136 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------ 173 (205)
|+.+.+++.+..+...+...+......+.......+..
T Consensus 954 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 1033 (1321)
T 4f4c_A 954 EDTFYENFCEKLDIPHKEAIKEAFIQGLSYGCASSVLYLLNTCAYRMGLALIITDPPTMQPMRVLRVMYAITISTSTLGF 1033 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTSSSSCSSCHHHHHHHHHHHHTTTSSTTG
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCccccchHHHHHHHHHHHHHHHHHHH
Confidence 99988888777666555444433333222111110000
Q ss_pred ------------------------------------------eEEEEeceEEecCCCCCCccccceeeecCCCC
Q psy12536 174 ------------------------------------------SIFIKNIKAKWLPDQPDYTLNDITLDVKNAES 205 (205)
Q Consensus 174 ------------------------------------------~I~~~~vsF~Y~~~~~~~vL~~i~l~i~~G~~ 205 (205)
+|+|+||+|+||++|+.|||+||||+|+|||+
T Consensus 1034 ~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~g~I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~ 1107 (1321)
T 4f4c_A 1034 ATSYFPEYAKATFAGGIIFGMLRKISKIDSLSLAGEKKKLYGKVIFKNVRFAYPERPEIEILKGLSFSVEPGQT 1107 (1321)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHCCCSSCTTCCCSBCCCCCCCEEEEEEEECCTTSCSSCSEEEEEEEECTTCE
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCcccCCCccCCCCCCCCCCeEEEEEEEEeCCCCCCCccccceeEEECCCCE
Confidence 69999999999988778999999999999985
No 7
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.94 E-value=1.7e-24 Score=173.06 Aligned_cols=145 Identities=15% Similarity=0.151 Sum_probs=114.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCccccCCCChhhHHHHHHhhHHHHHHHHHH-HhHH
Q psy12536 8 ACWALVALIVVDLLIDHQYDLAVQALGMELRVAGCSLIYRKALRLSKTALGDTTVGQVVNLLSNDVNRFDTACIF-LHHL 86 (205)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~g~i~~~~~~d~~~l~~~~~~-~~~~ 86 (205)
++++++++.++..++.+...+...+.+.++..++|.++|+|++++|+.+|+++++|++++++++|++.+...+.. +...
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~l~~r~~~d~~~i~~~~~~~~~~~ 143 (595)
T 2yl4_A 64 LCLGLSAVFLCGAAANAIRVYLMQTSGQRIVNRLRTSLFSSILRQEVAFFDKTRTGELINRLSSDTALLGRSVTENLSDG 143 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHSCHHHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455566777788888899999999999999999999999999999999999999999999999998866432 1111
Q ss_pred ------------------H-HHHH---HH-----HHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHhhhHHHH
Q psy12536 87 ------------------I-NRLL---GA-----KKMYLGKKTSELRLKTALRTDERVRLMNEIISGIQVIKMYAWERSF 139 (205)
Q Consensus 87 ------------------~-~~~~---~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~ 139 (205)
| .+++ .+ +...+.++.++..++..+..++..+.+.|.++|+++||+|++|+.+
T Consensus 144 ~~~~~~~i~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~ 223 (595)
T 2yl4_A 144 LRAGAQASVGISMMFFVSPNLATFVLSVVPPVSIIAVIYGRYLRKLTKVTQDSLAQATQLAEERIGNVRTVRAFGKEMTE 223 (595)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCccHHH
Confidence 0 0000 00 1556778888889999999999999999999999999999999987
Q ss_pred HHHHHHHHHHHHH
Q psy12536 140 ASMVRNARKKEIQ 152 (205)
Q Consensus 140 ~~~~~~~~~~~~~ 152 (205)
.+++++..++..+
T Consensus 224 ~~~~~~~~~~~~~ 236 (595)
T 2yl4_A 224 IEKYASKVDHVMQ 236 (595)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7776665554433
No 8
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.94 E-value=2.4e-24 Score=171.86 Aligned_cols=194 Identities=7% Similarity=0.118 Sum_probs=147.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCccccCCCChhhHHHHHHhhHHHHHHHHHH-HhHH---
Q psy12536 11 ALVALIVVDLLIDHQYDLAVQALGMELRVAGCSLIYRKALRLSKTALGDTTVGQVVNLLSNDVNRFDTACIF-LHHL--- 86 (205)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~g~i~~~~~~d~~~l~~~~~~-~~~~--- 86 (205)
+++++.++..++.+...+...+.+.++..++|.++|+|++++|+.+|++.++|++++++++|++.+.+.+.. +..+
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~ 149 (582)
T 3b60_A 70 VVIGLMILRGITSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSSGALITVVRE 149 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566778888999999999999999999999999999999999999999999999999999999886542 1111
Q ss_pred -------------------HHHHHHH-----HHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHhhhHHHHHHH
Q psy12536 87 -------------------INRLLGA-----KKMYLGKKTSELRLKTALRTDERVRLMNEIISGIQVIKMYAWERSFASM 142 (205)
Q Consensus 87 -------------------~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~ 142 (205)
+..++.+ +...+.++.++..++..+..++..+.+.|.++|+++||+|++|+.+.++
T Consensus 150 ~~~~i~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~ 229 (582)
T 3b60_A 150 GASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKR 229 (582)
T ss_dssp HHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcCHHHHHH
Confidence 0000000 1556778888889999999999999999999999999999999987777
Q ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHHHhhcc---------------------------------------------
Q psy12536 143 VRNARKKEI----QQIRGSTYIKGVLLSFIIFHTR--------------------------------------------- 173 (205)
Q Consensus 143 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~--------------------------------------------- 173 (205)
+++..++.. +..+.......+...+..+...
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~ 309 (582)
T 3b60_A 230 FDKVSNKMRLQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQ 309 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 665554443 3333333333333222211111
Q ss_pred -------------------------------eEEEEeceEEecCCCCCCccccceeeecCCCC
Q psy12536 174 -------------------------------SIFIKNIKAKWLPDQPDYTLNDITLDVKNAES 205 (205)
Q Consensus 174 -------------------------------~I~~~~vsF~Y~~~~~~~vL~~i~l~i~~G~~ 205 (205)
.|+++||+|+|+++ ++++|+|+||+|++||+
T Consensus 310 ~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~v~~~i~~G~~ 371 (582)
T 3b60_A 310 RGMAACQTLFAILDSEQEKDEGKRVIDRATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKT 371 (582)
T ss_dssp HHHHHHHHHHHHHHSCCSCCCCCBCCSCCCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCE
T ss_pred HHHHHHHHHHHHHcCCCCccCCCCCCCCCCCcEEEEEEEEEcCCC-CCccccceeEEEcCCCE
Confidence 49999999999853 36899999999999984
No 9
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.93 E-value=3e-25 Score=189.74 Aligned_cols=146 Identities=10% Similarity=-0.004 Sum_probs=118.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCccccCCCChhhHHHHHHhhHHHHHHHHHHHhH-H
Q psy12536 8 ACWALVALIVVDLLIDHQYDLAVQALGMELRVAGCSLIYRKALRLSKTALGDTTVGQVVNLLSNDVNRFDTACIFLHH-L 86 (205)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~g~i~~~~~~d~~~l~~~~~~~~~-~ 86 (205)
+++.++++.++..++.++..++....+.++..++|.++|+|++++|+.||+++++|++++++++|++.+++.+..... +
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~f~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~ 189 (1284)
T 3g5u_A 110 YAYYYTGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDVHDVGELNTRLTDDVSKINEGIGDKIGMF 189 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHSCCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666677788888889999999999999999999999999999999999999999999999999999887643211 1
Q ss_pred ----------------------HHHHH-----HHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHhhhHHHH
Q psy12536 87 ----------------------INRLL-----GAKKMYLGKKTSELRLKTALRTDERVRLMNEIISGIQVIKMYAWERSF 139 (205)
Q Consensus 87 ----------------------~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~ 139 (205)
+..++ .++...+.++.++..++..+..++.++.+.|.++|+++||+|++|+.+
T Consensus 190 ~~~~~~~i~~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ikaf~~e~~~ 269 (1284)
T 3g5u_A 190 FQAMATFFGGFIIGFTRGWKLTLVILAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKE 269 (1284)
T ss_dssp HHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHTTCCCCSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHhcchHHH
Confidence 00000 011667778888888999999999999999999999999999999887
Q ss_pred HHHHHHHHHHHHHH
Q psy12536 140 ASMVRNARKKEIQQ 153 (205)
Q Consensus 140 ~~~~~~~~~~~~~~ 153 (205)
.+++++..+...+.
T Consensus 270 ~~~~~~~~~~~~~~ 283 (1284)
T 3g5u_A 270 LERYNNNLEEAKRL 283 (1284)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 77777666555443
No 10
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.88 E-value=6.6e-21 Score=163.16 Aligned_cols=147 Identities=14% Similarity=0.117 Sum_probs=112.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCccccC--CCChhhHHHHHHhhHHHHHHHHHHHhH
Q psy12536 8 ACWALVALIVVDLLIDHQYDLAVQALGMELRVAGCSLIYRKALRLSKTALG--DTTVGQVVNLLSNDVNRFDTACIFLHH 85 (205)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~--~~~~g~i~~~~~~d~~~l~~~~~~~~~ 85 (205)
++++++++.++..++.+...+...+.+.++..++|.++|++++++|+.||+ ++++|++++++++|++.+...+.....
T Consensus 751 ~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ff~~~~~~~G~l~~rl~~D~~~i~~~~~~~l~ 830 (1284)
T 3g5u_A 751 FSLLFLILGIISFITFFLQGFTFGKAGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGATGSRLA 830 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHSCSCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566667777888888899999999999999999999999999999 478999999999999998877643211
Q ss_pred H-----------------------HHHHHH-----HHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHhhhHH
Q psy12536 86 L-----------------------INRLLG-----AKKMYLGKKTSELRLKTALRTDERVRLMNEIISGIQVIKMYAWER 137 (205)
Q Consensus 86 ~-----------------------~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~ 137 (205)
. +.+++. ++.....+...+...+..+..++....+.|.+.|+++||+|++|+
T Consensus 831 ~~~~~~~~~~~~~i~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~ti~a~~~e~ 910 (1284)
T 3g5u_A 831 VIFQNIANLGTGIIISLIYGWQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTREQ 910 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTTTTCSSHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence 1 000000 014445566666677777778888899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy12536 138 SFASMVRNARKKEIQQI 154 (205)
Q Consensus 138 ~~~~~~~~~~~~~~~~~ 154 (205)
.+.+++.+..+...+..
T Consensus 911 ~~~~~~~~~~~~~~~~~ 927 (1284)
T 3g5u_A 911 KFETMYAQSLQIPYRNA 927 (1284)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 98888877665544433
No 11
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=97.89 E-value=4.9e-06 Score=61.09 Aligned_cols=30 Identities=20% Similarity=0.335 Sum_probs=27.1
Q ss_pred eEEEEeceEEecCCCCCCccccceeeecCCCC
Q psy12536 174 SIFIKNIKAKWLPDQPDYTLNDITLDVKNAES 205 (205)
Q Consensus 174 ~I~~~~vsF~Y~~~~~~~vL~~i~l~i~~G~~ 205 (205)
.|+++||+|+|+++ +++|+|+||+|++||+
T Consensus 53 ~i~~~~vs~~y~~~--~~vL~~isl~i~~Ge~ 82 (306)
T 3nh6_A 53 RIEFENVHFSYADG--RETLQDVSFTVMPGQT 82 (306)
T ss_dssp CEEEEEEEEESSTT--CEEEEEEEEEECTTCE
T ss_pred eEEEEEEEEEcCCC--CceeeeeeEEEcCCCE
Confidence 69999999999863 6899999999999984
No 12
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=96.17 E-value=0.0024 Score=53.91 Aligned_cols=31 Identities=10% Similarity=0.211 Sum_probs=27.2
Q ss_pred eEEEEeceEEecCCCCCCccccceeeecCCCC
Q psy12536 174 SIFIKNIKAKWLPDQPDYTLNDITLDVKNAES 205 (205)
Q Consensus 174 ~I~~~~vsF~Y~~~~~~~vL~~i~l~i~~G~~ 205 (205)
-|+++||+|+|+++ ++++|+|+||+|++||+
T Consensus 671 mL~v~nLs~~Y~g~-~~~iL~dVSl~I~~Gei 701 (986)
T 2iw3_A 671 IVKVTNMEFQYPGT-SKPQITDINFQCSLSSR 701 (986)
T ss_dssp EEEEEEEEECCTTC-SSCSEEEEEEEEETTCE
T ss_pred eEEEEeeEEEeCCC-CceeeeccEEEEcCCCE
Confidence 49999999999864 46899999999999984
No 13
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=95.00 E-value=0.00019 Score=52.56 Aligned_cols=27 Identities=11% Similarity=-0.023 Sum_probs=24.2
Q ss_pred EEEEeceEEecCCCCCCccccceeeecCCCC
Q psy12536 175 IFIKNIKAKWLPDQPDYTLNDITLDVKNAES 205 (205)
Q Consensus 175 I~~~~vsF~Y~~~~~~~vL~~i~l~i~~G~~ 205 (205)
|+++||+|+|+ .++|+|+||+|++|++
T Consensus 102 i~~~~vs~~y~----~~vL~~vsl~i~~Ge~ 128 (305)
T 2v9p_A 102 FNYQNIELITF----INALKLWLKGIPKKNC 128 (305)
T ss_dssp HHHTTCCHHHH----HHHHHHHHHTCTTCSE
T ss_pred EEEEEEEEEcC----hhhhccceEEecCCCE
Confidence 67899999997 3799999999999984
No 14
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=94.53 E-value=0.01 Score=43.25 Aligned_cols=27 Identities=19% Similarity=0.236 Sum_probs=14.7
Q ss_pred eEEEEeceEEecCCCCCCccccceeeecCCCC
Q psy12536 174 SIFIKNIKAKWLPDQPDYTLNDITLDVKNAES 205 (205)
Q Consensus 174 ~I~~~~vsF~Y~~~~~~~vL~~i~l~i~~G~~ 205 (205)
.|+++||+|.| +++|+|+||+|++||+
T Consensus 40 ~l~~~~l~~~~-----~~vl~~isl~i~~Ge~ 66 (290)
T 2bbs_A 40 SLSFSNFSLLG-----TPVLKDINFKIERGQL 66 (290)
T ss_dssp ----------C-----CCSEEEEEEEECTTCE
T ss_pred eEEEEEEEEcC-----ceEEEeeEEEEcCCCE
Confidence 48999999863 4799999999999984
No 15
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=91.24 E-value=0.019 Score=43.53 Aligned_cols=30 Identities=10% Similarity=0.264 Sum_probs=27.2
Q ss_pred eEEEEeceEEecCCCCCCccc--------------cceeeecCCCC
Q psy12536 174 SIFIKNIKAKWLPDQPDYTLN--------------DITLDVKNAES 205 (205)
Q Consensus 174 ~I~~~~vsF~Y~~~~~~~vL~--------------~i~l~i~~G~~ 205 (205)
.|+|+||+|.||.+ +.+|+ |+++.|.+||+
T Consensus 133 ri~Fe~ltp~yP~e--r~~Le~~~~~~~~tGiraID~~~pi~rGQr 176 (422)
T 3ice_A 133 KILFENLTPLHANS--RLRMERGNGSTEDLTARVLDLASPIGRGQR 176 (422)
T ss_dssp SCCTTTSCEESCCS--BCCCCCTTCCTTHHHHHHHHHHSCCBTTCE
T ss_pred CceeccccccCCCC--ccccccCCCCcccccceeeeeeeeecCCcE
Confidence 79999999999984 78999 99999999984
No 16
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=90.68 E-value=0.11 Score=44.11 Aligned_cols=29 Identities=17% Similarity=0.175 Sum_probs=25.7
Q ss_pred eEEEEeceEEecCCCCCCccccceeeecCCCC
Q psy12536 174 SIFIKNIKAKWLPDQPDYTLNDITLDVKNAES 205 (205)
Q Consensus 174 ~I~~~~vsF~Y~~~~~~~vL~~i~l~i~~G~~ 205 (205)
.+...|++++|++ +++|+|+||+|++||+
T Consensus 435 ~L~~~~ls~~yg~---~~iL~~vsl~I~~Ge~ 463 (986)
T 2iw3_A 435 DLCNCEFSLAYGA---KILLNKTQLRLKRARR 463 (986)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCE
T ss_pred eeEEeeEEEEECC---EEeEecceEEEcCCCE
Confidence 6888899999964 5799999999999984
No 17
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=84.74 E-value=0.29 Score=39.50 Aligned_cols=25 Identities=12% Similarity=0.203 Sum_probs=21.3
Q ss_pred EeceEEecCCCCCCccccceeeecCCCC
Q psy12536 178 KNIKAKWLPDQPDYTLNDITLDVKNAES 205 (205)
Q Consensus 178 ~~vsF~Y~~~~~~~vL~~i~l~i~~G~~ 205 (205)
+||+++|++. ..+|+|+| ++++||.
T Consensus 95 ~~ls~~yg~~--~~~l~~vs-~i~~Ge~ 119 (607)
T 3bk7_A 95 EDCVHRYGVN--AFVLYRLP-IVKDGMV 119 (607)
T ss_dssp GSEEEECSTT--CCEEECCC-CCCTTSE
T ss_pred CCeEEEECCC--CeeeCCCC-CCCCCCE
Confidence 9999999653 36999999 9999984
No 18
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=82.43 E-value=0.021 Score=42.96 Aligned_cols=29 Identities=17% Similarity=0.190 Sum_probs=23.5
Q ss_pred EEEeceEE---ecCCCCCCcc---------ccceeeecCCCC
Q psy12536 176 FIKNIKAK---WLPDQPDYTL---------NDITLDVKNAES 205 (205)
Q Consensus 176 ~~~~vsF~---Y~~~~~~~vL---------~~i~l~i~~G~~ 205 (205)
+|+||+|+ ||+. ++++| +++||++++|+.
T Consensus 137 ~f~~v~f~~~~Y~~~-~~~vL~~~~~~~~~~~l~~~i~~G~~ 177 (361)
T 2gza_A 137 FFKHVRPMSKSLTPF-EQELLALKEAGDYMSFLRRAVQLERV 177 (361)
T ss_dssp TTSCCCCSCSCCCHH-HHHHHHHHHHTCHHHHHHHHHHTTCC
T ss_pred CcCccccccccccch-hHHHHhhhhhHHHHHHHHHHHhcCCE
Confidence 78999999 9753 34566 999999999984
No 19
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=77.78 E-value=0.12 Score=40.00 Aligned_cols=29 Identities=14% Similarity=0.108 Sum_probs=24.7
Q ss_pred eEEEEeceEEecCCCCCCccccceeeecCCCC
Q psy12536 174 SIFIKNIKAKWLPDQPDYTLNDITLDVKNAES 205 (205)
Q Consensus 174 ~I~~~~vsF~Y~~~~~~~vL~~i~l~i~~G~~ 205 (205)
.++++||++.|+.+ .++|+++ |+|++||+
T Consensus 131 ~l~~~~v~~~~~tg--~~vld~v-l~i~~Gq~ 159 (438)
T 2dpy_A 131 PLQRTPIEHVLDTG--VRAINAL-LTVGRGQR 159 (438)
T ss_dssp TTTSCCCCSBCCCS--CHHHHHH-SCCBTTCE
T ss_pred ceEEeccceecCCC--ceEEeee-EEecCCCE
Confidence 36789999999753 6799999 99999984
No 20
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=76.69 E-value=0.84 Score=37.28 Aligned_cols=30 Identities=3% Similarity=-0.051 Sum_probs=22.7
Q ss_pred EEEEeceEEecCCCCCCccccceeeecCCCC
Q psy12536 175 IFIKNIKAKWLPDQPDYTLNDITLDVKNAES 205 (205)
Q Consensus 175 I~~~~vsF~Y~~~~~~~vL~~i~l~i~~G~~ 205 (205)
...++..+.+.+. ..++|+|+||+|++||+
T Consensus 321 ~~~~~~~~~~~~~-~~~~L~~vsl~I~~Ge~ 350 (670)
T 3ux8_A 321 RRPDGRWLEVVGA-REHNLKNVSVKIPLGTF 350 (670)
T ss_dssp CCCCSCEEEEEEE-CSTTCCSEEEEEETTSE
T ss_pred ccccccceeecCc-cccccccceeEecCCCE
Confidence 3445666777554 56799999999999984
No 21
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=71.65 E-value=0.27 Score=36.67 Aligned_cols=28 Identities=7% Similarity=0.186 Sum_probs=24.1
Q ss_pred EEEEeceEEecCCCCCCccccceeeecCCCC
Q psy12536 175 IFIKNIKAKWLPDQPDYTLNDITLDVKNAES 205 (205)
Q Consensus 175 I~~~~vsF~Y~~~~~~~vL~~i~l~i~~G~~ 205 (205)
++.+++++.|+.+ ..+|+++ |+|++||+
T Consensus 46 i~~~~l~~~~~tg--~~ald~l-l~i~~Gq~ 73 (347)
T 2obl_A 46 LLRQVIDQPFILG--VRAIDGL-LTCGIGQR 73 (347)
T ss_dssp TTCCCCCSEECCS--CHHHHHH-SCEETTCE
T ss_pred eeecccceecCCC--CEEEEee-eeecCCCE
Confidence 6788999999753 6799999 99999984
No 22
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=70.20 E-value=2 Score=34.16 Aligned_cols=28 Identities=11% Similarity=0.144 Sum_probs=24.3
Q ss_pred eEEEEeceEEecCCCCCCccccceeeecCCCC
Q psy12536 174 SIFIKNIKAKWLPDQPDYTLNDITLDVKNAES 205 (205)
Q Consensus 174 ~I~~~~vsF~Y~~~~~~~vL~~i~l~i~~G~~ 205 (205)
.++++|++++|.+ ..|+++||+|++||+
T Consensus 287 ~l~~~~l~~~~~~----~~l~~~~~~i~~Ge~ 314 (538)
T 1yqt_A 287 LVTYPRLVKDYGS----FRLEVEPGEIKKGEV 314 (538)
T ss_dssp EEEECCEEEEETT----EEEEECCEEEETTCE
T ss_pred EEEEeeEEEEECC----EEEEeCccccCCCCE
Confidence 5999999999953 469999999999984
No 23
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=67.12 E-value=2.5 Score=34.10 Aligned_cols=28 Identities=7% Similarity=0.121 Sum_probs=24.3
Q ss_pred eEEEEeceEEecCCCCCCccccceeeecCCCC
Q psy12536 174 SIFIKNIKAKWLPDQPDYTLNDITLDVKNAES 205 (205)
Q Consensus 174 ~I~~~~vsF~Y~~~~~~~vL~~i~l~i~~G~~ 205 (205)
.++++|++++|.+ ..|+++||++++||+
T Consensus 357 ~l~~~~l~~~~~~----~~l~~~~~~v~~Gei 384 (607)
T 3bk7_A 357 LVEYPRLVKDYGS----FKLEVEPGEIRKGEV 384 (607)
T ss_dssp EEEECCEEEECSS----CEEEECCEEEETTCE
T ss_pred EEEEeceEEEecc----eEEEecccccCCCCE
Confidence 5999999999953 479999999999984
No 24
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=63.67 E-value=3.6 Score=34.63 Aligned_cols=24 Identities=4% Similarity=0.109 Sum_probs=20.2
Q ss_pred eEEEEeceEEecCCCCCCccccceeeecCCCC
Q psy12536 174 SIFIKNIKAKWLPDQPDYTLNDITLDVKNAES 205 (205)
Q Consensus 174 ~I~~~~vsF~Y~~~~~~~vL~~i~l~i~~G~~ 205 (205)
.++++|+++ .+|+|+||+||+||+
T Consensus 502 ~L~v~~l~~--------~~L~~vsl~i~~Gei 525 (842)
T 2vf7_A 502 WLELNGVTR--------NNLDNLDVRFPLGVM 525 (842)
T ss_dssp EEEEEEEEE--------TTEEEEEEEEESSSE
T ss_pred eEEEEeeee--------cccccceEEEcCCCE
Confidence 489999975 259999999999984
No 25
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=59.69 E-value=1.6 Score=35.18 Aligned_cols=26 Identities=19% Similarity=0.170 Sum_probs=21.8
Q ss_pred EEeceEEecCCCCCCccccceeeecCCC
Q psy12536 177 IKNIKAKWLPDQPDYTLNDITLDVKNAE 204 (205)
Q Consensus 177 ~~~vsF~Y~~~~~~~vL~~i~l~i~~G~ 204 (205)
.++++|+|++. .++++|+||++++|+
T Consensus 349 ~~~~~~~y~~~--~~~l~~vsl~v~~G~ 374 (608)
T 3j16_B 349 SASRAFSYPSL--KKTQGDFVLNVEEGE 374 (608)
T ss_dssp SSSSCCEECCE--EEECSSCEEEECCEE
T ss_pred ccceeEEecCc--ccccCceEEEEecCc
Confidence 37899999863 578999999999994
No 26
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=57.59 E-value=4.7 Score=34.81 Aligned_cols=26 Identities=23% Similarity=0.456 Sum_probs=17.6
Q ss_pred EEEEe-----ceEEecCCCCCCccccceeeecC
Q psy12536 175 IFIKN-----IKAKWLPDQPDYTLNDITLDVKN 202 (205)
Q Consensus 175 I~~~~-----vsF~Y~~~~~~~vL~~i~l~i~~ 202 (205)
|+++| |++.|++ +.+|++|++|++++
T Consensus 751 l~i~~~rHP~l~~~~~~--~~~v~ndi~l~~~~ 781 (1022)
T 2o8b_B 751 LELKGSRHPCITKTFFG--DDFIPNDILIGCEE 781 (1022)
T ss_dssp EEEEEECCCC------C--CCCCCEEEEESCCC
T ss_pred EEEEeccccEEEEEecC--CceEeeeeeecccc
Confidence 89999 9999964 36899999999987
No 27
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=53.71 E-value=5.9 Score=31.49 Aligned_cols=28 Identities=18% Similarity=0.036 Sum_probs=24.1
Q ss_pred eEEEEeceEEecCCCCCCccccceeeecCCCC
Q psy12536 174 SIFIKNIKAKWLPDQPDYTLNDITLDVKNAES 205 (205)
Q Consensus 174 ~I~~~~vsF~Y~~~~~~~vL~~i~l~i~~G~~ 205 (205)
.++++|++.+|.+ ..|++.||+|++||+
T Consensus 269 ~l~~~~l~~~~~~----~~l~~~~~~i~~Gei 296 (538)
T 3ozx_A 269 KMKWTKIIKKLGD----FQLVVDNGEAKEGEI 296 (538)
T ss_dssp EEEECCEEEEETT----EEEEECCEEEETTCE
T ss_pred eEEEcceEEEECC----EEEEeccceECCCCE
Confidence 6899999999964 468899999999984
No 28
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=50.94 E-value=0.27 Score=36.41 Aligned_cols=14 Identities=7% Similarity=0.162 Sum_probs=12.0
Q ss_pred ccccceeeecCCCC
Q psy12536 192 TLNDITLDVKNAES 205 (205)
Q Consensus 192 vL~~i~l~i~~G~~ 205 (205)
+++++|+++++|+.
T Consensus 160 ~l~~l~~~i~~g~~ 173 (330)
T 2pt7_A 160 AISAIKDGIAIGKN 173 (330)
T ss_dssp HHHHHHHHHHHTCC
T ss_pred HHhhhhhhccCCCE
Confidence 78899999999874
No 29
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=46.25 E-value=10 Score=32.52 Aligned_cols=24 Identities=4% Similarity=0.159 Sum_probs=19.1
Q ss_pred eEEEEeceEEecCCCCCCccccceeeecCCCC
Q psy12536 174 SIFIKNIKAKWLPDQPDYTLNDITLDVKNAES 205 (205)
Q Consensus 174 ~I~~~~vsF~Y~~~~~~~vL~~i~l~i~~G~~ 205 (205)
.++++|++ ..+|+||||+||+||+
T Consensus 629 ~L~v~~l~--------~~~Lk~Vsl~I~~Gei 652 (972)
T 2r6f_A 629 WLEVVGAR--------EHNLKNVSVKIPLGTF 652 (972)
T ss_dssp EEEEEEEC--------SSSCCSEEEEEESSSE
T ss_pred EEEEecCc--------ccccccceEEEcCCCE
Confidence 47788774 2369999999999984
No 30
>2w56_A VC0508; unknown function; 1.90A {Vibrio cholerae} PDB: 2w56_B
Probab=46.18 E-value=12 Score=24.10 Aligned_cols=24 Identities=4% Similarity=0.110 Sum_probs=17.0
Q ss_pred eEEecCCCCCCccccceeeecCCC
Q psy12536 181 KAKWLPDQPDYTLNDITLDVKNAE 204 (205)
Q Consensus 181 sF~Y~~~~~~~vL~~i~l~i~~G~ 204 (205)
+|+|.+.+-+..=++|+|++..|.
T Consensus 79 DFsY~G~~~pELekeLDF~f~~~~ 102 (147)
T 2w56_A 79 DFAYMGNYYPELERNLDFDFRVGQ 102 (147)
T ss_dssp EEEEC--CCCCEEEEEEEETTTTE
T ss_pred eecccCCCCcceeeEEEEecCCCE
Confidence 688888766667889999887663
No 31
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=44.57 E-value=8 Score=32.97 Aligned_cols=24 Identities=13% Similarity=0.045 Sum_probs=17.5
Q ss_pred eEEecCCCCCCccccceeeecCCCC
Q psy12536 181 KAKWLPDQPDYTLNDITLDVKNAES 205 (205)
Q Consensus 181 sF~Y~~~~~~~vL~~i~l~i~~G~~ 205 (205)
++.+++. ..+.|+|+||+||+|++
T Consensus 589 ~l~v~~~-~~~~Lk~Vsl~I~~Gei 612 (916)
T 3pih_A 589 SLKIKGV-RHNNLKNIDVEIPLGVF 612 (916)
T ss_dssp EEEEEEE-CSTTCCSEEEEEESSSE
T ss_pred eEEEeee-ccccccccceEEcCCcE
Confidence 3444433 35689999999999984
No 32
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=44.51 E-value=11 Score=32.40 Aligned_cols=24 Identities=8% Similarity=0.130 Sum_probs=19.3
Q ss_pred eEEEEeceEEecCCCCCCccccceeeecCCCC
Q psy12536 174 SIFIKNIKAKWLPDQPDYTLNDITLDVKNAES 205 (205)
Q Consensus 174 ~I~~~~vsF~Y~~~~~~~vL~~i~l~i~~G~~ 205 (205)
.++++|++ ..+|+|+||+||+||+
T Consensus 647 ~L~v~~l~--------~~~Lk~Vsl~I~~Gei 670 (993)
T 2ygr_A 647 QLTVVGAR--------EHNLRGIDVSFPLGVL 670 (993)
T ss_dssp EEEEEEEC--------STTCCSEEEEEESSSE
T ss_pred eEEEecCc--------cccccCceEEECCCCE
Confidence 48888875 2369999999999984
No 33
>2v1l_A Hypothetical protein; pathogenicity island, unknown function; 2.13A {Vibrio cholerae}
Probab=44.12 E-value=12 Score=24.04 Aligned_cols=24 Identities=4% Similarity=0.084 Sum_probs=16.2
Q ss_pred eEEecCCCCCCccccceeeecCCC
Q psy12536 181 KAKWLPDQPDYTLNDITLDVKNAE 204 (205)
Q Consensus 181 sF~Y~~~~~~~vL~~i~l~i~~G~ 204 (205)
+|+|.+.+-+..=++++|++..|.
T Consensus 79 DFsY~G~~~pELekeLDF~f~~~~ 102 (148)
T 2v1l_A 79 DFAYVGNHFPELERCLDFDFQRGD 102 (148)
T ss_dssp EEEEC---CCCEEEEEEEETTTTE
T ss_pred eecccCCCCcceeeEEEEecCCCE
Confidence 688888766667889999887663
No 34
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=29.40 E-value=15 Score=29.77 Aligned_cols=25 Identities=4% Similarity=0.336 Sum_probs=19.4
Q ss_pred EeceEEecCCCCCCccccceeeecCCCC
Q psy12536 178 KNIKAKWLPDQPDYTLNDITLDVKNAES 205 (205)
Q Consensus 178 ~~vsF~Y~~~~~~~vL~~i~l~i~~G~~ 205 (205)
+|++++|..+ ...|++++ ++++||.
T Consensus 81 ~~~~~~Y~~~--~~~l~~l~-~~~~Gei 105 (608)
T 3j16_B 81 AHVTHRYSAN--SFKLHRLP-TPRPGQV 105 (608)
T ss_dssp TTEEEECSTT--SCEEECCC-CCCTTSE
T ss_pred CCeEEEECCC--ceeecCCC-CCCCCCE
Confidence 4689999764 56888888 6899974
No 35
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=28.52 E-value=1.2 Score=34.64 Aligned_cols=22 Identities=14% Similarity=0.119 Sum_probs=14.8
Q ss_pred EEEEeceEEecCCCCCCccccceeeecCCCC
Q psy12536 175 IFIKNIKAKWLPDQPDYTLNDITLDVKNAES 205 (205)
Q Consensus 175 I~~~~vsF~Y~~~~~~~vL~~i~l~i~~G~~ 205 (205)
++++||+|+|+ |+||++++|++
T Consensus 119 i~~~nl~~~y~---------~vsl~i~~Ge~ 140 (460)
T 2npi_A 119 KYIYNLHFMLE---------KIRMSNFEGPR 140 (460)
T ss_dssp HHHHHHHHHHH---------HHHHHSSSCCC
T ss_pred hhhhhhhehhh---------cCceEeCCCCE
Confidence 34556666663 68888888874
No 36
>2xiw_A DNA-binding protein 7D; HET: MSE; 1.50A {Sulfolobus acidocaldarius}
Probab=23.84 E-value=19 Score=19.22 Aligned_cols=10 Identities=30% Similarity=0.385 Sum_probs=7.8
Q ss_pred EeceEEecCC
Q psy12536 178 KNIKAKWLPD 187 (205)
Q Consensus 178 ~~vsF~Y~~~ 187 (205)
++|+|.|+++
T Consensus 39 KmvsFtYddn 48 (79)
T 2xiw_A 39 KNVKFLYNDN 48 (79)
T ss_dssp TEEEEEEEET
T ss_pred ceeEEEEcCC
Confidence 5789999764
No 37
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=23.06 E-value=1.8e+02 Score=24.97 Aligned_cols=32 Identities=25% Similarity=0.319 Sum_probs=21.4
Q ss_pred eEEEEeceEEec----CCCCCCccccceeeecCCCC
Q psy12536 174 SIFIKNIKAKWL----PDQPDYTLNDITLDVKNAES 205 (205)
Q Consensus 174 ~I~~~~vsF~Y~----~~~~~~vL~~i~l~i~~G~~ 205 (205)
.|++++...-.= +..+++|++|+||++++|+.
T Consensus 640 ~i~i~~~rHP~le~~~~~~~~~V~ndvsl~~~~g~i 675 (918)
T 3thx_B 640 KIVIKNGRHPVIDVLLGEQDQYVPNNTDLSEDSERV 675 (918)
T ss_dssp EEEEEEECCHHHHHHTCSCSSSCCEEEEECTTSCCE
T ss_pred cEEEEeccchhhhhhhccCCceecccccccCCCCeE
Confidence 477776533220 11147899999999999973
No 38
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=21.21 E-value=0.96 Score=33.02 Aligned_cols=22 Identities=5% Similarity=0.146 Sum_probs=18.5
Q ss_pred eEEEEeceEEecCCCCCCccccceeee
Q psy12536 174 SIFIKNIKAKWLPDQPDYTLNDITLDV 200 (205)
Q Consensus 174 ~I~~~~vsF~Y~~~~~~~vL~~i~l~i 200 (205)
.|+++||++.|. |+++++++.+
T Consensus 37 ~i~~~~v~~~y~-----~~~~~i~~~~ 58 (308)
T 1sq5_A 37 DLSLEEVAEIYL-----PLSRLLNFYI 58 (308)
T ss_dssp TCCHHHHHHTHH-----HHHHHHHHHH
T ss_pred ccchHhHHHHHH-----HHHHHHHHHH
Confidence 488899999993 5899999887
Done!