RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12536
         (205 letters)



>d1i8da2 b.43.4.3 (A:94-206) Riboflavin synthase {Escherichia coli
           [TaxId: 562]}
          Length = 113

 Score = 28.4 bits (63), Expect = 0.24
 Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 6/44 (13%)

Query: 52  LSKTALGDTTVGQVVNLLSNDVNRFDTACIFLHHLINRLLGAKK 95
           L +T LG   +G  VN+        D     +   + R+L A++
Sbjct: 73  LERTTLGKKKLGARVNI------EIDPQTQAVVDTVERVLAARE 110


>d1knva_ c.52.1.7 (A:) Restriction endonuclease Bse634I {Bacillus
           stearothermophilus [TaxId: 1422]}
          Length = 290

 Score = 25.7 bits (56), Expect = 4.2
 Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 9/62 (14%)

Query: 77  DTACIFLHHLINRLLGAKKMYLGKKTSELRLKTALRTDERVRLMNE---IISGIQVIKMY 133
           D A      +  +             + + LKT+LR D R++L++E   + S    +KM 
Sbjct: 170 DVALTLFKDIEGKCK------WDSLVAGVGLKTSLRPDRRLQLVHEGNILKSLFAHLKMR 223

Query: 134 AW 135
            W
Sbjct: 224 YW 225


>d1e8ca1 c.98.1.1 (A:3-103) UDP-N-acetylmuramyl tripeptide
           synthetase MurE {Escherichia coli [TaxId: 562]}
          Length = 101

 Score = 24.6 bits (53), Expect = 5.4
 Identities = 9/23 (39%), Positives = 16/23 (69%)

Query: 177 IKNIKAKWLPDQPDYTLNDITLD 199
           ++++ A W+PD P   L ++TLD
Sbjct: 3   LRDLLAPWVPDAPSRALREMTLD 25


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.137    0.398 

Gapped
Lambda     K      H
   0.267   0.0585    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 720,313
Number of extensions: 30600
Number of successful extensions: 72
Number of sequences better than 10.0: 1
Number of HSP's gapped: 72
Number of HSP's successfully gapped: 7
Length of query: 205
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 124
Effective length of database: 1,295,466
Effective search space: 160637784
Effective search space used: 160637784
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (23.7 bits)