BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12537
(140 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VKH|A Chain A, X-Ray Structure Of A Functional Full-Length Dynein Motor
Domain
pdb|3VKH|B Chain B, X-Ray Structure Of A Functional Full-Length Dynein Motor
Domain
Length = 3367
Score = 96.7 bits (239), Expect = 4e-21, Method: Composition-based stats.
Identities = 55/146 (37%), Positives = 78/146 (53%), Gaps = 12/146 (8%)
Query: 3 GIKRNLQRTYASWSQTKLNS--TDQGRALFTLAWFHALIQERRTYIPQGWAKFYEFNDSD 60
G+K NL T+ T+++ ++ R F LAWFHA+IQER YIP GW KF+EFND+D
Sbjct: 2880 GVKANLLHTFIGIPATRMDKQPAERSRIYFLLAWFHAIIQERLRYIPLGWTKFFEFNDAD 2939
Query: 61 XXXXXXXXXXRLSQDGMG-------GVKWDYIHGLLGNAIYGGRIDNAQDMKVLSSYLQF 113
+ G + W + +LG+ IYGGRIDN DM++L S+L+
Sbjct: 2940 LRGALDSIDYWVDLYSKGRSNIDPDKIPWIAVRTILGSTIYGGRIDNEFDMRLLYSFLEQ 2999
Query: 114 YFSSNVAKTASTPLAP--GVVLPSST 137
F+ + A PL P G+ +P T
Sbjct: 3000 LFTPS-AFNPDFPLVPSIGLSVPEGT 3024
>pdb|3VKG|A Chain A, X-Ray Structure Of An Mtbd Truncation Mutant Of Dynein Motor
Domain
pdb|3VKG|B Chain B, X-Ray Structure Of An Mtbd Truncation Mutant Of Dynein Motor
Domain
Length = 3245
Score = 96.3 bits (238), Expect = 5e-21, Method: Composition-based stats.
Identities = 55/146 (37%), Positives = 78/146 (53%), Gaps = 12/146 (8%)
Query: 3 GIKRNLQRTYASWSQTKLNS--TDQGRALFTLAWFHALIQERRTYIPQGWAKFYEFNDSD 60
G+K NL T+ T+++ ++ R F LAWFHA+IQER YIP GW KF+EFND+D
Sbjct: 2758 GVKANLLHTFIGIPATRMDKQPAERSRIYFLLAWFHAIIQERLRYIPLGWTKFFEFNDAD 2817
Query: 61 XXXXXXXXXXRLSQDGMG-------GVKWDYIHGLLGNAIYGGRIDNAQDMKVLSSYLQF 113
+ G + W + +LG+ IYGGRIDN DM++L S+L+
Sbjct: 2818 LRGALDSIDYWVDLYSKGRSNIDPDKIPWIAVRTILGSTIYGGRIDNEFDMRLLYSFLEQ 2877
Query: 114 YFSSNVAKTASTPLAP--GVVLPSST 137
F+ + A PL P G+ +P T
Sbjct: 2878 LFTPS-AFNPDFPLVPSIGLSVPEGT 2902
>pdb|3QMZ|A Chain A, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
pdb|3QMZ|B Chain B, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
Length = 2486
Score = 65.5 bits (158), Expect = 8e-12, Method: Composition-based stats.
Identities = 31/105 (29%), Positives = 51/105 (48%), Gaps = 4/105 (3%)
Query: 30 FTLAWFHALIQERRTYIPQGWAKFYEFNDSDXXXXXXXXXXRLSQDGMGGVKWDYIHGLL 89
F L+WFHALI R +P G++K Y FND D L+ + + W + +
Sbjct: 2324 FLLSWFHALITARTRLVPHGFSKKYYFNDCDFQFASVYLENVLATNSTNNIPWAQVRDHI 2383
Query: 90 GNAIYGGRIDNAQDMKVLSSYLQFYFSSNVAKTASTPLAPGVVLP 134
+YGG+ID +D++V++ F + + + PGV +P
Sbjct: 2384 ATIVYGGKIDEEKDLEVVAKLCAHVFCG----SDNLQIVPGVRIP 2424
>pdb|4AI6|A Chain A, Dynein Motor Domain - Adp Complex
pdb|4AI6|B Chain B, Dynein Motor Domain - Adp Complex
pdb|4AKG|A Chain A, Dynein Motor Domain - Atp Complex
pdb|4AKG|B Chain B, Dynein Motor Domain - Atp Complex
pdb|4AKH|A Chain A, Dynein Motor Domain - Amppnp Complex
pdb|4AKH|B Chain B, Dynein Motor Domain - Amppnp Complex
pdb|4AKI|A Chain A, Dynein Motor Domain - Luac Derivative
pdb|4AKI|B Chain B, Dynein Motor Domain - Luac Derivative
Length = 2695
Score = 65.5 bits (158), Expect = 9e-12, Method: Composition-based stats.
Identities = 31/105 (29%), Positives = 51/105 (48%), Gaps = 4/105 (3%)
Query: 30 FTLAWFHALIQERRTYIPQGWAKFYEFNDSDXXXXXXXXXXRLSQDGMGGVKWDYIHGLL 89
F L+WFHALI R +P G++K Y FND D L+ + + W + +
Sbjct: 2533 FLLSWFHALITARTRLVPHGFSKKYYFNDCDFQFASVYLENVLATNSTNNIPWAQVRDHI 2592
Query: 90 GNAIYGGRIDNAQDMKVLSSYLQFYFSSNVAKTASTPLAPGVVLP 134
+YGG+ID +D++V++ F + + + PGV +P
Sbjct: 2593 ATIVYGGKIDEEKDLEVVAKLCAHVFCG----SDNLQIVPGVRIP 2633
>pdb|3KZS|A Chain A, Crystal Structure Of Glycosyl Hydrolase Family 5
(Np_809925.1) From Bacteroides Thetaiotaomicron
Vpi-5482 At 2.10 A Resolution
pdb|3KZS|B Chain B, Crystal Structure Of Glycosyl Hydrolase Family 5
(Np_809925.1) From Bacteroides Thetaiotaomicron
Vpi-5482 At 2.10 A Resolution
pdb|3KZS|C Chain C, Crystal Structure Of Glycosyl Hydrolase Family 5
(Np_809925.1) From Bacteroides Thetaiotaomicron
Vpi-5482 At 2.10 A Resolution
pdb|3KZS|D Chain D, Crystal Structure Of Glycosyl Hydrolase Family 5
(Np_809925.1) From Bacteroides Thetaiotaomicron
Vpi-5482 At 2.10 A Resolution
Length = 463
Score = 26.9 bits (58), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 3 GIKRNLQRTYASWSQTKLNSTDQGRAL 29
G ++ Q+TY WS KL +++GR L
Sbjct: 1 GAQKKTQKTYIPWSNGKLVVSEEGRYL 27
>pdb|2QSF|A Chain A, Crystal Structure Of The Rad4-Rad23 Complex
pdb|2QSG|A Chain A, Crystal Structure Of Rad4-Rad23 Bound To A Uv-Damaged Dna
Length = 533
Score = 26.9 bits (58), Expect = 3.6, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 6 RNLQRTYASWSQTKLNSTDQGRALFTLAWFH----ALIQERRTYIPQGWAKFYEFNDSDX 61
R++ R YA W +K+ + F WF AL +RT I +++ D
Sbjct: 274 RDVTRRYAQWMNSKVRKRRITKDDFGEKWFRKVITALHHRKRTKIDDYEDQYFFQRDESE 333
Query: 62 XXXXXXXXXR------LSQD---------GMGGVKWDYIHGLLGNAIYGGRIDNAQDMKV 106
+ L QD G + +HG +G + ++ +D+
Sbjct: 334 GIPDSVQDLKNHPYYVLEQDIKQTQIVKPGCKECGYLKVHGKVGKVL---KVYAKRDIAD 390
Query: 107 LSSYLQFYFSSNVAKTAS 124
L S Q+Y + + KT S
Sbjct: 391 LKSARQWYMNGRILKTGS 408
>pdb|2QSH|A Chain A, Crystal Structure Of Rad4-Rad23 Bound To A Mismatch Dna
Length = 538
Score = 26.9 bits (58), Expect = 3.8, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 6 RNLQRTYASWSQTKLNSTDQGRALFTLAWFH----ALIQERRTYIPQGWAKFYEFNDSDX 61
R++ R YA W +K+ + F WF AL +RT I +++ D
Sbjct: 279 RDVTRRYAQWMNSKVRKRRITKDDFGEKWFRKVITALHHRKRTKIDDYEDQYFFQRDESE 338
Query: 62 XXXXXXXXXR------LSQD---------GMGGVKWDYIHGLLGNAIYGGRIDNAQDMKV 106
+ L QD G + +HG +G + ++ +D+
Sbjct: 339 GIPDSVQDLKNHPYYVLEQDIKQTQIVKPGCKECGYLKVHGKVGKVL---KVYAKRDIAD 395
Query: 107 LSSYLQFYFSSNVAKTAS 124
L S Q+Y + + KT S
Sbjct: 396 LKSARQWYMNGRILKTGS 413
>pdb|3OHM|B Chain B, Crystal Structure Of Activated G Alpha Q Bound To Its
Effector Phospholipase C Beta 3
Length = 885
Score = 26.6 bits (57), Expect = 5.4, Method: Composition-based stats.
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Query: 94 YGGRIDNAQDMKVLSSYLQFYFSSN--VAKTASTPLAPGVVLPSSTNL 139
+ +D+A+ ++ Y + F + PLAPGV LPS +L
Sbjct: 411 FENHVDSAKQQAKMAEYCRSIFGDALLIEPLDKYPLAPGVPLPSPQDL 458
>pdb|4GNK|B Chain B, Crystal Structure Of Galphaq In Complex With Full-length
Human Plcbeta3
pdb|4GNK|D Chain D, Crystal Structure Of Galphaq In Complex With Full-length
Human Plcbeta3
Length = 1235
Score = 26.6 bits (57), Expect = 5.5, Method: Composition-based stats.
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Query: 94 YGGRIDNAQDMKVLSSYLQFYFSSN--VAKTASTPLAPGVVLPSSTNL 139
+ +D+A+ ++ Y + F + PLAPGV LPS +L
Sbjct: 413 FENHVDSAKQQAKMAEYCRSIFGDALLIEPLDKYPLAPGVPLPSPQDL 460
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,983,158
Number of Sequences: 62578
Number of extensions: 137573
Number of successful extensions: 229
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 222
Number of HSP's gapped (non-prelim): 9
length of query: 140
length of database: 14,973,337
effective HSP length: 89
effective length of query: 51
effective length of database: 9,403,895
effective search space: 479598645
effective search space used: 479598645
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 46 (22.3 bits)